RMA_RS01835 a44d23e636cdda496397b8ba9d631d49 267 PANTHER PTHR35851 73 257 1.4E-20 T 22-04-2016 RMA_RS01835 a44d23e636cdda496397b8ba9d631d49 267 PANTHER PTHR35851:SF1 73 257 1.4E-20 T 22-04-2016 RMA_RS01835 a44d23e636cdda496397b8ba9d631d49 267 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 43 265 20.815 T 22-04-2016 IPR026579 Cell division protein FtsQ GO:0000917 RMA_RS01835 a44d23e636cdda496397b8ba9d631d49 267 Pfam PF08478 POTRA domain, FtsQ-type 73 141 2.0E-18 T 22-04-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type RMA_RS01835 a44d23e636cdda496397b8ba9d631d49 267 Pfam PF03799 Cell division protein FtsQ 145 257 1.7E-9 T 22-04-2016 IPR005548 Cell division protein FtsQ/DivIB RMA_RS01315 8a63f3280cd6c07b529717574b0d2810 324 PANTHER PTHR34388 1 308 4.5E-19 T 22-04-2016 RMA_RS01315 8a63f3280cd6c07b529717574b0d2810 324 Gene3D G3DSA:1.10.8.60 135 217 1.5E-4 T 22-04-2016 RMA_RS01315 8a63f3280cd6c07b529717574b0d2810 324 SUPERFAMILY SSF48019 212 310 1.28E-7 T 22-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RMA_RS01315 8a63f3280cd6c07b529717574b0d2810 324 SUPERFAMILY SSF52540 10 199 1.91E-7 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05535 26cacf706f3aa5f0dc350587dfbcc609 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 22-04-2016 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05535 26cacf706f3aa5f0dc350587dfbcc609 177 Gene3D G3DSA:3.90.930.12 83 176 5.0E-34 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS05535 26cacf706f3aa5f0dc350587dfbcc609 177 PIRSF PIRSF002162 1 177 5.8E-49 T 22-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS05535 26cacf706f3aa5f0dc350587dfbcc609 177 SUPERFAMILY SSF56053 1 82 1.01E-23 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS05535 26cacf706f3aa5f0dc350587dfbcc609 177 SUPERFAMILY SSF56053 83 176 3.01E-31 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS05535 26cacf706f3aa5f0dc350587dfbcc609 177 Pfam PF00347 Ribosomal protein L6 91 163 1.1E-15 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS05535 26cacf706f3aa5f0dc350587dfbcc609 177 Pfam PF00347 Ribosomal protein L6 11 82 2.2E-17 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS05535 26cacf706f3aa5f0dc350587dfbcc609 177 Gene3D G3DSA:3.90.930.12 2 82 1.7E-28 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS05535 26cacf706f3aa5f0dc350587dfbcc609 177 PANTHER PTHR11655 1 176 2.4E-70 T 22-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS05535 26cacf706f3aa5f0dc350587dfbcc609 177 PANTHER PTHR11655:SF14 1 176 2.4E-70 T 22-04-2016 RMA_RS05535 26cacf706f3aa5f0dc350587dfbcc609 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 3.6E-66 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS05535 26cacf706f3aa5f0dc350587dfbcc609 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 33.081 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS05535 26cacf706f3aa5f0dc350587dfbcc609 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 4.6E-25 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS05535 26cacf706f3aa5f0dc350587dfbcc609 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 4.6E-25 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS05535 26cacf706f3aa5f0dc350587dfbcc609 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 4.6E-25 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS04570 fc8d518960ff3db909a363873933e800 237 SUPERFAMILY SSF50249 3 66 4.28E-5 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04570 fc8d518960ff3db909a363873933e800 237 SUPERFAMILY SSF57863 86 179 5.49E-5 T 22-04-2016 RMA_RS04570 fc8d518960ff3db909a363873933e800 237 Gene3D G3DSA:2.40.50.140 3 46 3.2E-5 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04570 fc8d518960ff3db909a363873933e800 237 Pfam PF02565 Recombination protein O C terminal 86 219 3.9E-16 T 22-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RMA_RS04570 fc8d518960ff3db909a363873933e800 237 TIGRFAM TIGR00613 reco: DNA repair protein RecO 3 232 2.2E-61 T 22-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RMA_RS04570 fc8d518960ff3db909a363873933e800 237 Hamap MF_00201 DNA repair protein RecO [recO]. 1 233 14.76 T 22-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RMA_RS04570 fc8d518960ff3db909a363873933e800 237 ProDom PD202328 DNA REPAIR RECOMBINATION RECO DAMAGE O O RECO-RELATED RECOMBINATIONAL RP549 117 235 5.0E-64 T 22-04-2016 RMA_RS04570 fc8d518960ff3db909a363873933e800 237 Pfam PF11967 Recombination protein O N terminal 1 76 6.5E-12 T 22-04-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal RMA_RS04570 fc8d518960ff3db909a363873933e800 237 PANTHER PTHR33991 1 237 4.0E-14 T 22-04-2016 RMA_RS07315 95a23585ffe5e737abd30eb01ff1a3a7 132 PANTHER PTHR10160 48 131 2.0E-34 T 22-04-2016 RMA_RS07315 95a23585ffe5e737abd30eb01ff1a3a7 132 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 48 131 2.2E-35 T 22-04-2016 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 21 1371 12.131 T 22-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 18 1368 0.0 T 22-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Gene3D G3DSA:3.90.1110.10 363 461 5.6E-65 T 22-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Gene3D G3DSA:3.90.1110.10 168 245 5.6E-65 T 22-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Gene3D G3DSA:2.40.50.150 1075 1089 1.6E-54 T 22-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Gene3D G3DSA:2.40.50.150 844 954 1.6E-54 T 22-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Gene3D G3DSA:2.40.50.100 734 809 2.3E-29 T 22-04-2016 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Gene3D G3DSA:2.40.270.10 1090 1271 2.1E-82 T 22-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Gene3D G3DSA:2.40.270.10 810 837 2.1E-82 T 22-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Pfam PF10385 RNA polymerase beta subunit external 1 domain 608 673 1.1E-19 T 22-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Pfam PF04560 RNA polymerase Rpb2, domain 7 1295 1369 1.3E-25 T 22-04-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 PANTHER PTHR20856:SF20 1063 1158 0.0 T 22-04-2016 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 PANTHER PTHR20856:SF20 760 947 0.0 T 22-04-2016 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 PANTHER PTHR20856:SF20 1211 1373 0.0 T 22-04-2016 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 PANTHER PTHR20856:SF20 357 743 0.0 T 22-04-2016 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 PANTHER PTHR20856:SF20 2 246 0.0 T 22-04-2016 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1093 1105 - T 22-04-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Pfam PF04561 RNA polymerase Rpb2, domain 2 186 237 1.2E-4 T 22-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Pfam PF04561 RNA polymerase Rpb2, domain 2 370 471 2.7E-18 T 22-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Gene3D G3DSA:2.30.150.10 609 673 8.6E-23 T 22-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Pfam PF04563 RNA polymerase beta subunit 34 515 1.2E-31 T 22-04-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Gene3D G3DSA:3.90.1100.10 462 608 1.1E-147 T 22-04-2016 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Gene3D G3DSA:3.90.1100.10 677 731 1.1E-147 T 22-04-2016 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Gene3D G3DSA:3.90.1100.10 29 166 1.1E-147 T 22-04-2016 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Pfam PF00562 RNA polymerase Rpb2, domain 6 736 1292 1.7E-159 T 22-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 PANTHER PTHR20856 1063 1158 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 PANTHER PTHR20856 760 947 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 PANTHER PTHR20856 1211 1373 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 PANTHER PTHR20856 357 743 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 PANTHER PTHR20856 2 246 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 SUPERFAMILY SSF64484 20 241 0.0 T 22-04-2016 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 SUPERFAMILY SSF64484 360 956 0.0 T 22-04-2016 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 SUPERFAMILY SSF64484 1069 1371 0.0 T 22-04-2016 RMA_RS01010 1903b05f30be9f949b5933d47968d66e 1373 Pfam PF04565 RNA polymerase Rpb2, domain 3 530 598 2.9E-32 T 22-04-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS03335 81374e1ed38614e60bef5c0c249feb78 560 Gene3D G3DSA:3.60.15.10 10 261 2.2E-65 T 22-04-2016 IPR001279 Metallo-beta-lactamase RMA_RS03335 81374e1ed38614e60bef5c0c249feb78 560 PANTHER PTHR11203:SF22 4 557 2.5E-156 T 22-04-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 RMA_RS03335 81374e1ed38614e60bef5c0c249feb78 560 Pfam PF00753 Metallo-beta-lactamase superfamily 33 180 2.6E-10 T 22-04-2016 IPR001279 Metallo-beta-lactamase RMA_RS03335 81374e1ed38614e60bef5c0c249feb78 560 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 15 554 1.8E-121 T 22-04-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 RMA_RS03335 81374e1ed38614e60bef5c0c249feb78 560 SMART SM00849 25 220 3.8E-21 T 22-04-2016 IPR001279 Metallo-beta-lactamase RMA_RS03335 81374e1ed38614e60bef5c0c249feb78 560 SUPERFAMILY SSF56281 15 424 5.5E-79 T 22-04-2016 IPR001279 Metallo-beta-lactamase RMA_RS03335 81374e1ed38614e60bef5c0c249feb78 560 PANTHER PTHR11203 4 557 2.5E-156 T 22-04-2016 RMA_RS03335 81374e1ed38614e60bef5c0c249feb78 560 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 357 413 6.1E-11 T 22-04-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain RMA_RS01670 745b121f48f5b8e9054640669710b81b 453 Pfam PF02321 Outer membrane efflux protein 234 422 1.7E-28 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RMA_RS01670 745b121f48f5b8e9054640669710b81b 453 Pfam PF02321 Outer membrane efflux protein 22 213 9.3E-19 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RMA_RS01670 745b121f48f5b8e9054640669710b81b 453 SUPERFAMILY SSF56954 2 424 1.27E-67 T 22-04-2016 RMA_RS01670 745b121f48f5b8e9054640669710b81b 453 PANTHER PTHR30026:SF3 4 448 2.3E-57 T 22-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 RMA_RS01670 745b121f48f5b8e9054640669710b81b 453 PANTHER PTHR30026 4 448 2.3E-57 T 22-04-2016 RMA_RS01670 745b121f48f5b8e9054640669710b81b 453 Gene3D G3DSA:1.20.1600.10 19 425 3.9E-64 T 22-04-2016 RMA_RS00425 bd6828e5a45b1812223df770d5b8c9d2 387 Pfam PF00924 Mechanosensitive ion channel 139 380 1.3E-49 T 22-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RMA_RS00425 bd6828e5a45b1812223df770d5b8c9d2 387 PANTHER PTHR30414 5 383 1.3E-63 T 22-04-2016 RMA_RS00425 bd6828e5a45b1812223df770d5b8c9d2 387 PANTHER PTHR30414:SF0 5 383 1.3E-63 T 22-04-2016 IPR030192 Miniconductance mechanosensitive channel YbdG GO:0008381|GO:0016021|GO:0071470 RMA_RS00425 bd6828e5a45b1812223df770d5b8c9d2 387 Gene3D G3DSA:2.30.30.60 199 247 6.4E-13 T 22-04-2016 RMA_RS00425 bd6828e5a45b1812223df770d5b8c9d2 387 SUPERFAMILY SSF50182 182 247 4.58E-13 T 22-04-2016 IPR010920 LSM domain RMA_RS00430 ff30db98b05b556f6e28a45600757034 560 PRINTS PR01900 YidC translocation/secretion protein signature 513 537 1.6E-24 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RMA_RS00430 ff30db98b05b556f6e28a45600757034 560 PRINTS PR01900 YidC translocation/secretion protein signature 346 362 1.6E-24 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RMA_RS00430 ff30db98b05b556f6e28a45600757034 560 PRINTS PR01900 YidC translocation/secretion protein signature 494 509 1.6E-24 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RMA_RS00430 ff30db98b05b556f6e28a45600757034 560 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 6 560 22.152 T 22-04-2016 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 RMA_RS00430 ff30db98b05b556f6e28a45600757034 560 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 360 558 5.9E-69 T 22-04-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal RMA_RS00430 ff30db98b05b556f6e28a45600757034 560 PANTHER PTHR12428:SF14 172 470 1.0E-72 T 22-04-2016 RMA_RS00430 ff30db98b05b556f6e28a45600757034 560 PANTHER PTHR12428:SF14 490 558 1.0E-72 T 22-04-2016 RMA_RS00430 ff30db98b05b556f6e28a45600757034 560 PRINTS PR00701 60kDa inner membrane protein signature 331 351 1.0E-15 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RMA_RS00430 ff30db98b05b556f6e28a45600757034 560 PRINTS PR00701 60kDa inner membrane protein signature 250 265 1.0E-15 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RMA_RS00430 ff30db98b05b556f6e28a45600757034 560 PRINTS PR00701 60kDa inner membrane protein signature 422 445 1.0E-15 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RMA_RS00430 ff30db98b05b556f6e28a45600757034 560 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 7 359 4.0E-93 T 22-04-2016 IPR028053 Membrane insertase YidC, N-terminal RMA_RS00430 ff30db98b05b556f6e28a45600757034 560 PANTHER PTHR12428 172 470 1.0E-72 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RMA_RS00430 ff30db98b05b556f6e28a45600757034 560 PANTHER PTHR12428 490 558 1.0E-72 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RMA_RS00430 ff30db98b05b556f6e28a45600757034 560 Pfam PF02096 60Kd inner membrane protein 361 558 1.4E-60 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RMA_RS00430 ff30db98b05b556f6e28a45600757034 560 Pfam PF14849 YidC periplasmic domain 71 349 1.1E-71 T 22-04-2016 IPR028053 Membrane insertase YidC, N-terminal RMA_RS04510 82ac9afb0f160ebbab9e9b31b8c19945 330 Gene3D G3DSA:3.20.20.70 2 327 3.4E-139 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RMA_RS04510 82ac9afb0f160ebbab9e9b31b8c19945 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 190 209 3.2E-53 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04510 82ac9afb0f160ebbab9e9b31b8c19945 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 152 171 3.2E-53 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04510 82ac9afb0f160ebbab9e9b31b8c19945 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 122 136 3.2E-53 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04510 82ac9afb0f160ebbab9e9b31b8c19945 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 298 317 3.2E-53 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04510 82ac9afb0f160ebbab9e9b31b8c19945 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 268 283 3.2E-53 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04510 82ac9afb0f160ebbab9e9b31b8c19945 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 243 259 3.2E-53 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04510 82ac9afb0f160ebbab9e9b31b8c19945 330 Pfam PF00490 Delta-aminolevulinic acid dehydratase 5 322 3.9E-132 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04510 82ac9afb0f160ebbab9e9b31b8c19945 330 SUPERFAMILY SSF51569 2 326 2.34E-131 T 22-04-2016 RMA_RS04510 82ac9afb0f160ebbab9e9b31b8c19945 330 PANTHER PTHR11458 1 330 2.8E-162 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04510 82ac9afb0f160ebbab9e9b31b8c19945 330 SMART SM01004 2 324 2.0E-209 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04510 82ac9afb0f160ebbab9e9b31b8c19945 330 PIRSF PIRSF001415 1 327 1.3E-144 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS01755 8faa43b636986106d40dd0ee7dd71632 161 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 7 161 34.581 T 22-04-2016 IPR022927 RNA pyrophosphohydrolase RppH RMA_RS01755 8faa43b636986106d40dd0ee7dd71632 161 Gene3D G3DSA:3.90.79.10 11 156 2.2E-30 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RMA_RS01755 8faa43b636986106d40dd0ee7dd71632 161 PANTHER PTHR11839:SF8 13 161 2.5E-35 T 22-04-2016 RMA_RS01755 8faa43b636986106d40dd0ee7dd71632 161 Pfam PF00293 NUDIX domain 13 150 2.0E-23 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RMA_RS01755 8faa43b636986106d40dd0ee7dd71632 161 PANTHER PTHR11839 13 161 2.5E-35 T 22-04-2016 RMA_RS01755 8faa43b636986106d40dd0ee7dd71632 161 ProSitePatterns PS00893 Nudix box signature. 46 67 - T 22-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RMA_RS01755 8faa43b636986106d40dd0ee7dd71632 161 SUPERFAMILY SSF55811 9 157 1.76E-28 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 PANTHER PTHR11451:SF31 1 633 0.0 T 22-04-2016 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 322 528 7.9E-42 T 22-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 SUPERFAMILY SSF52954 528 632 5.29E-28 T 22-04-2016 IPR004154 Anticodon-binding RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 SUPERFAMILY SSF81271 2 61 1.44E-15 T 22-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 Gene3D G3DSA:3.30.980.10 187 223 2.4E-38 T 22-04-2016 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 Gene3D G3DSA:3.30.980.10 66 129 2.4E-38 T 22-04-2016 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 633 33.4 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 Gene3D G3DSA:3.30.54.20 130 185 3.3E-23 T 22-04-2016 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 Gene3D G3DSA:3.30.930.10 241 529 1.5E-120 T 22-04-2016 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 SMART SM00863 169 218 8.1E-25 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 Pfam PF03129 Anticodon binding domain 540 629 1.1E-19 T 22-04-2016 IPR004154 Anticodon-binding RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 Pfam PF02824 TGS domain 2 61 4.1E-13 T 22-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 Gene3D G3DSA:3.40.50.800 530 633 2.3E-28 T 22-04-2016 IPR004154 Anticodon-binding RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 SUPERFAMILY SSF55681 242 525 3.19E-100 T 22-04-2016 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 361 384 3.3E-53 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 328 356 3.3E-53 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 506 519 3.3E-53 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 463 491 3.3E-53 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 533 545 3.3E-53 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 PANTHER PTHR11451 1 633 0.0 T 22-04-2016 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 Gene3D G3DSA:3.10.20.30 1 64 1.2E-22 T 22-04-2016 IPR012675 Beta-grasp domain RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 169 218 1.2E-14 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 SUPERFAMILY SSF55186 63 240 5.89E-63 T 22-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 RMA_RS01620 eab2ad9e66d02c0896b2a7a101b5ceba 635 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 630 8.2E-215 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RMA_RS06980 8a5cbe85f2993e52ea4993cb04c878ba 233 SUPERFAMILY SSF52540 3 215 2.35E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06980 8a5cbe85f2993e52ea4993cb04c878ba 233 SMART SM00382 30 201 6.3E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS06980 8a5cbe85f2993e52ea4993cb04c878ba 233 Gene3D G3DSA:3.40.50.300 3 212 3.3E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06980 8a5cbe85f2993e52ea4993cb04c878ba 233 PANTHER PTHR24220:SF466 7 231 1.2E-70 T 22-04-2016 RMA_RS06980 8a5cbe85f2993e52ea4993cb04c878ba 233 Pfam PF00005 ABC transporter 22 150 1.4E-28 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS06980 8a5cbe85f2993e52ea4993cb04c878ba 233 PANTHER PTHR24220 7 231 1.2E-70 T 22-04-2016 RMA_RS06980 8a5cbe85f2993e52ea4993cb04c878ba 233 ProSitePatterns PS00211 ABC transporters family signature. 123 137 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS04295 8211a8655fc70a4c092fe4a43ff65b8b 330 Gene3D G3DSA:1.10.240.10 206 323 2.9E-18 T 22-04-2016 RMA_RS04295 8211a8655fc70a4c092fe4a43ff65b8b 330 PANTHER PTHR10055 2 330 1.2E-164 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RMA_RS04295 8211a8655fc70a4c092fe4a43ff65b8b 330 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 2 329 41.308 T 22-04-2016 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2 RMA_RS04295 8211a8655fc70a4c092fe4a43ff65b8b 330 PANTHER PTHR10055:SF10 2 330 1.2E-164 T 22-04-2016 RMA_RS04295 8211a8655fc70a4c092fe4a43ff65b8b 330 Gene3D G3DSA:3.40.50.620 3 205 3.8E-87 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS04295 8211a8655fc70a4c092fe4a43ff65b8b 330 SUPERFAMILY SSF52374 4 328 1.72E-92 T 22-04-2016 RMA_RS04295 8211a8655fc70a4c092fe4a43ff65b8b 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 141 162 1.9E-26 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RMA_RS04295 8211a8655fc70a4c092fe4a43ff65b8b 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 15 31 1.9E-26 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RMA_RS04295 8211a8655fc70a4c092fe4a43ff65b8b 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 195 205 1.9E-26 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RMA_RS04295 8211a8655fc70a4c092fe4a43ff65b8b 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 65 84 1.9E-26 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RMA_RS04295 8211a8655fc70a4c092fe4a43ff65b8b 330 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 1 328 2.0E-105 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RMA_RS04295 8211a8655fc70a4c092fe4a43ff65b8b 330 Pfam PF00579 tRNA synthetases class I (W and Y) 4 283 3.6E-78 T 22-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS02260 13e04240de18528ce9c8107980466c3a 365 SUPERFAMILY SSF52402 7 251 3.75E-53 T 22-04-2016 RMA_RS02260 13e04240de18528ce9c8107980466c3a 365 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 9 361 39.613 T 22-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RMA_RS02260 13e04240de18528ce9c8107980466c3a 365 Gene3D G3DSA:3.40.50.620 6 216 3.0E-82 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS02260 13e04240de18528ce9c8107980466c3a 365 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 10 360 8.5E-106 T 22-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RMA_RS02260 13e04240de18528ce9c8107980466c3a 365 Gene3D G3DSA:2.30.30.280 223 279 1.3E-19 T 22-04-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 RMA_RS02260 13e04240de18528ce9c8107980466c3a 365 PANTHER PTHR11933:SF10 11 365 9.2E-172 T 22-04-2016 RMA_RS02260 13e04240de18528ce9c8107980466c3a 365 PANTHER PTHR11933 11 365 9.2E-172 T 22-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RMA_RS02260 13e04240de18528ce9c8107980466c3a 365 Pfam PF03054 tRNA methyl transferase 10 360 3.8E-128 T 22-04-2016 RMA_RS02260 13e04240de18528ce9c8107980466c3a 365 Gene3D G3DSA:2.40.30.10 283 363 1.9E-22 T 22-04-2016 RMA_RS04300 12c10c2369c164e06dda62eb461845a3 241 PANTHER PTHR10434:SF11 1 241 5.2E-51 T 22-04-2016 RMA_RS04300 12c10c2369c164e06dda62eb461845a3 241 Gene3D G3DSA:3.40.1130.10 67 221 6.2E-19 T 22-04-2016 RMA_RS04300 12c10c2369c164e06dda62eb461845a3 241 SMART SM00563 75 188 2.5E-32 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RMA_RS04300 12c10c2369c164e06dda62eb461845a3 241 PANTHER PTHR10434 1 241 5.2E-51 T 22-04-2016 RMA_RS04300 12c10c2369c164e06dda62eb461845a3 241 SUPERFAMILY SSF69593 13 235 1.06E-33 T 22-04-2016 RMA_RS04300 12c10c2369c164e06dda62eb461845a3 241 Pfam PF01553 Acyltransferase 62 184 9.8E-23 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RMA_RS06490 b07d891922b54191e3ab5b580856f2b1 303 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 31 302 59.604 T 22-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RMA_RS06490 b07d891922b54191e3ab5b580856f2b1 303 Gene3D G3DSA:1.20.120.140 3 81 5.5E-19 T 22-04-2016 RMA_RS06490 b07d891922b54191e3ab5b580856f2b1 303 PANTHER PTHR11564 1 300 6.2E-109 T 22-04-2016 RMA_RS06490 b07d891922b54191e3ab5b580856f2b1 303 SMART SM00382 100 276 6.6E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS06490 b07d891922b54191e3ab5b580856f2b1 303 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 275 288 - T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RMA_RS06490 b07d891922b54191e3ab5b580856f2b1 303 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 32 301 2.1E-105 T 22-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RMA_RS06490 b07d891922b54191e3ab5b580856f2b1 303 Gene3D G3DSA:3.40.50.300 95 302 3.6E-74 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06490 b07d891922b54191e3ab5b580856f2b1 303 Pfam PF00448 SRP54-type protein, GTPase domain 102 301 4.9E-74 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RMA_RS06490 b07d891922b54191e3ab5b580856f2b1 303 SUPERFAMILY SSF52540 96 301 1.03E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06490 b07d891922b54191e3ab5b580856f2b1 303 PANTHER PTHR11564:SF16 1 300 6.2E-109 T 22-04-2016 RMA_RS06490 b07d891922b54191e3ab5b580856f2b1 303 Pfam PF02881 SRP54-type protein, helical bundle domain 17 79 3.9E-9 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RMA_RS06490 b07d891922b54191e3ab5b580856f2b1 303 SMART SM00962 101 302 1.8E-105 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RMA_RS06490 b07d891922b54191e3ab5b580856f2b1 303 SUPERFAMILY SSF47364 3 80 2.75E-18 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RMA_RS06490 b07d891922b54191e3ab5b580856f2b1 303 SMART SM00963 8 87 2.1E-15 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RMA_RS02705 ff3e7f68f01b393c825c0102b8621e50 306 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 1 304 56.422 T 22-04-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 RMA_RS02705 ff3e7f68f01b393c825c0102b8621e50 306 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 6 303 3.8E-99 T 22-04-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 RMA_RS02705 ff3e7f68f01b393c825c0102b8621e50 306 PANTHER PTHR30349 2 306 1.4E-80 T 22-04-2016 RMA_RS02705 ff3e7f68f01b393c825c0102b8621e50 306 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 1 305 26.577 T 22-04-2016 IPR023009 Tyrosine recombinase XerC/XerD RMA_RS02705 ff3e7f68f01b393c825c0102b8621e50 306 Gene3D G3DSA:1.10.443.10 108 297 4.7E-47 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RMA_RS02705 ff3e7f68f01b393c825c0102b8621e50 306 SUPERFAMILY SSF56349 3 298 5.3E-54 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RMA_RS02705 ff3e7f68f01b393c825c0102b8621e50 306 Pfam PF00589 Phage integrase family 109 290 7.0E-39 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RMA_RS02705 ff3e7f68f01b393c825c0102b8621e50 306 PANTHER PTHR30349:SF5 2 306 1.4E-80 T 22-04-2016 RMA_RS02705 ff3e7f68f01b393c825c0102b8621e50 306 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 4 85 1.1E-21 T 22-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RMA_RS02705 ff3e7f68f01b393c825c0102b8621e50 306 Gene3D G3DSA:1.10.150.130 2 95 1.1E-23 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 SUPERFAMILY SSF56672 472 875 3.56E-139 T 22-04-2016 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 SMART SM00482 635 839 2.7E-116 T 22-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 172 264 2.6E-25 T 22-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 SMART SM00279 171 206 2.9E-11 T 22-04-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 Gene3D G3DSA:1.10.150.20 661 766 1.1E-30 T 22-04-2016 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 7 168 6.3E-55 T 22-04-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 SMART SM00475 3 260 6.5E-136 T 22-04-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 SUPERFAMILY SSF88723 3 168 6.73E-57 T 22-04-2016 IPR029060 PIN domain-like RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 Gene3D G3DSA:3.30.70.370 767 875 2.7E-63 T 22-04-2016 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 Gene3D G3DSA:3.30.70.370 613 660 2.7E-63 T 22-04-2016 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 Gene3D G3DSA:3.30.420.10 304 489 5.1E-5 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 PANTHER PTHR10133:SF27 2 874 2.0E-292 T 22-04-2016 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 Pfam PF00476 DNA polymerase family A 497 873 2.3E-142 T 22-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 Gene3D G3DSA:1.10.150.20 184 244 3.2E-22 T 22-04-2016 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 Gene3D G3DSA:1.20.1060.10 491 612 3.7E-33 T 22-04-2016 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 PANTHER PTHR10133 2 874 2.0E-292 T 22-04-2016 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 SUPERFAMILY SSF47807 172 285 1.03E-28 T 22-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 TIGRFAM TIGR00593 pola: DNA polymerase I 7 875 0.0 T 22-04-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 703 728 2.3E-71 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 627 642 2.3E-71 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 679 692 2.3E-71 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 792 808 2.3E-71 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 649 672 2.3E-71 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 762 773 2.3E-71 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 740 751 2.3E-71 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 822 835 2.3E-71 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 604 626 2.3E-71 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 ProSitePatterns PS00447 DNA polymerase family A signature. 703 722 - T 22-04-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06495 2b3f95c0d72942bb40dc810364c91a27 875 Gene3D G3DSA:3.40.50.1010 5 183 3.3E-66 T 22-04-2016 IPR029060 PIN domain-like RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 SUPERFAMILY SSF49503 165 302 7.2E-58 T 22-04-2016 IPR008972 Cupredoxin RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 PANTHER PTHR22888 31 299 7.9E-119 T 22-04-2016 RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 Gene3D G3DSA:1.10.287.90 73 164 2.6E-32 T 22-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 233 281 - T 22-04-2016 IPR001505 Copper centre Cu(A) GO:0005507 RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 169 288 6.8E-54 T 22-04-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 71 157 9.9E-28 T 22-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 PRINTS PR01166 Cytochrome c oxidase subunit II signature 208 229 1.76E-52 T 22-04-2016 RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 PRINTS PR01166 Cytochrome c oxidase subunit II signature 252 269 1.76E-52 T 22-04-2016 RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 PRINTS PR01166 Cytochrome c oxidase subunit II signature 232 252 1.76E-52 T 22-04-2016 RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 PRINTS PR01166 Cytochrome c oxidase subunit II signature 143 163 1.76E-52 T 22-04-2016 RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 PRINTS PR01166 Cytochrome c oxidase subunit II signature 165 184 1.76E-52 T 22-04-2016 RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 PRINTS PR01166 Cytochrome c oxidase subunit II signature 270 287 1.76E-52 T 22-04-2016 RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 PRINTS PR01166 Cytochrome c oxidase subunit II signature 131 143 1.76E-52 T 22-04-2016 RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 81 297 9.6E-63 T 22-04-2016 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 SUPERFAMILY SSF81464 69 162 1.96E-31 T 22-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 6 53 7.8E-26 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS03060 8e9ac77fb32da8c93f5f57d1e08b08ba 315 Gene3D G3DSA:2.60.40.420 167 299 6.9E-58 T 22-04-2016 IPR008972 Cupredoxin RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 SMART SM00962 102 297 4.1E-99 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 SMART SM00382 101 248 4.1E-6 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 Gene3D G3DSA:1.20.120.140 2 87 1.8E-30 T 22-04-2016 RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 SMART SM00963 1 86 5.3E-33 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 Gene3D G3DSA:1.10.260.30 328 432 1.3E-37 T 22-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 Gene3D G3DSA:3.40.50.300 96 298 3.0E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 Pfam PF00448 SRP54-type protein, GTPase domain 104 296 2.0E-71 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 Pfam PF02978 Signal peptide binding domain 328 428 9.7E-32 T 22-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 1.3E-19 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 PANTHER PTHR11564:SF7 1 435 7.1E-218 T 22-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 430 3.2E-178 T 22-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 PANTHER PTHR11564 1 435 7.1E-218 T 22-04-2016 RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 SUPERFAMILY SSF47446 328 430 2.13E-35 T 22-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 270 283 - T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 448 32.498 T 22-04-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 RMA_RS01190 f97e71384f3386e11c84778badd51c46 449 SUPERFAMILY SSF52540 42 355 9.29E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03590 b2bdbc7ec6891b603680755a5c0535b2 130 Gene3D G3DSA:1.10.260.40 15 107 5.9E-17 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RMA_RS03590 b2bdbc7ec6891b603680755a5c0535b2 130 Pfam PF01381 Helix-turn-helix 19 73 6.0E-14 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RMA_RS03590 b2bdbc7ec6891b603680755a5c0535b2 130 SUPERFAMILY SSF47413 8 82 8.7E-19 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RMA_RS03590 b2bdbc7ec6891b603680755a5c0535b2 130 SMART SM00530 18 73 2.9E-12 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RMA_RS03590 b2bdbc7ec6891b603680755a5c0535b2 130 PANTHER PTHR10245 9 76 4.4E-16 T 22-04-2016 RMA_RS03590 b2bdbc7ec6891b603680755a5c0535b2 130 PANTHER PTHR10245:SF38 9 76 4.4E-16 T 22-04-2016 RMA_RS00570 f29a6e4183853b4252f806f0aa691a80 737 PANTHER PTHR10169:SF48 2 609 2.6E-202 T 22-04-2016 RMA_RS00570 f29a6e4183853b4252f806f0aa691a80 737 Gene3D G3DSA:3.90.199.10 333 398 3.7E-113 T 22-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RMA_RS00570 f29a6e4183853b4252f806f0aa691a80 737 Gene3D G3DSA:3.90.199.10 29 233 3.7E-113 T 22-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RMA_RS00570 f29a6e4183853b4252f806f0aa691a80 737 PANTHER PTHR10169 2 609 2.6E-202 T 22-04-2016 RMA_RS00570 f29a6e4183853b4252f806f0aa691a80 737 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 647 682 0.0024 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RMA_RS00570 f29a6e4183853b4252f806f0aa691a80 737 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 601 645 0.025 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RMA_RS00570 f29a6e4183853b4252f806f0aa691a80 737 SUPERFAMILY SSF101904 507 735 4.58E-43 T 22-04-2016 RMA_RS00570 f29a6e4183853b4252f806f0aa691a80 737 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 2 736 32.288 T 22-04-2016 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RMA_RS00570 f29a6e4183853b4252f806f0aa691a80 737 SMART SM00434 9 461 6.2E-255 T 22-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS00570 f29a6e4183853b4252f806f0aa691a80 737 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 30 466 1.3E-147 T 22-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS00570 f29a6e4183853b4252f806f0aa691a80 737 Gene3D G3DSA:3.30.1360.40 235 331 1.3E-29 T 22-04-2016 IPR024946 Arginine repressor C-terminal-like domain RMA_RS00570 f29a6e4183853b4252f806f0aa691a80 737 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 6 736 0.0 T 22-04-2016 RMA_RS00570 f29a6e4183853b4252f806f0aa691a80 737 SUPERFAMILY SSF56719 29 476 5.23E-162 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RMA_RS00570 f29a6e4183853b4252f806f0aa691a80 737 Gene3D G3DSA:2.120.10.90 503 722 5.7E-26 T 22-04-2016 RMA_RS00270 e38afa5b48cb103ceb3db4c2d0f88a0e 189 SUPERFAMILY SSF143456 7 189 5.36E-46 T 22-04-2016 RMA_RS00270 e38afa5b48cb103ceb3db4c2d0f88a0e 189 PANTHER PTHR30327:SF1 5 189 1.0E-32 T 22-04-2016 RMA_RS00270 e38afa5b48cb103ceb3db4c2d0f88a0e 189 Gene3D G3DSA:3.30.70.1300 46 132 1.4E-16 T 22-04-2016 RMA_RS00270 e38afa5b48cb103ceb3db4c2d0f88a0e 189 Pfam PF02622 Uncharacterized ACR, COG1678 22 176 1.2E-36 T 22-04-2016 IPR003774 Protein of unknown function UPF0301 RMA_RS00270 e38afa5b48cb103ceb3db4c2d0f88a0e 189 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 7 189 31.045 T 22-04-2016 IPR003774 Protein of unknown function UPF0301 RMA_RS00270 e38afa5b48cb103ceb3db4c2d0f88a0e 189 Gene3D G3DSA:3.40.1740.10 133 178 6.9E-27 T 22-04-2016 RMA_RS00270 e38afa5b48cb103ceb3db4c2d0f88a0e 189 Gene3D G3DSA:3.40.1740.10 6 45 6.9E-27 T 22-04-2016 RMA_RS00270 e38afa5b48cb103ceb3db4c2d0f88a0e 189 PANTHER PTHR30327 5 189 1.0E-32 T 22-04-2016 RMA_RS06120 9ba526ae0aaf7aeaeec14db7237206f9 241 Pfam PF02104 SURF1 family 9 211 1.0E-32 T 22-04-2016 IPR002994 Surfeit locus 1/Shy1 GO:0016020 RMA_RS06120 9ba526ae0aaf7aeaeec14db7237206f9 241 PANTHER PTHR23427:SF2 5 239 6.3E-34 T 22-04-2016 RMA_RS06120 9ba526ae0aaf7aeaeec14db7237206f9 241 PANTHER PTHR23427 5 239 6.3E-34 T 22-04-2016 RMA_RS04060 b05c05496551fe9b6c03109b05626703 201 Gene3D G3DSA:3.90.226.10 3 193 2.5E-87 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS04060 b05c05496551fe9b6c03109b05626703 201 PANTHER PTHR10381 1 193 3.2E-133 T 22-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RMA_RS04060 b05c05496551fe9b6c03109b05626703 201 Pfam PF00574 Clp protease 12 192 1.1E-86 T 22-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RMA_RS04060 b05c05496551fe9b6c03109b05626703 201 PANTHER PTHR10381:SF11 1 193 3.2E-133 T 22-04-2016 RMA_RS04060 b05c05496551fe9b6c03109b05626703 201 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 1 191 8.4E-98 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RMA_RS04060 b05c05496551fe9b6c03109b05626703 201 SUPERFAMILY SSF52096 11 197 7.11E-73 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS04060 b05c05496551fe9b6c03109b05626703 201 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 112 125 - T 22-04-2016 IPR033135 ClpP, histidine active site RMA_RS04060 b05c05496551fe9b6c03109b05626703 201 PRINTS PR00127 Clp protease catalytic subunit P signature 19 34 1.39E-50 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RMA_RS04060 b05c05496551fe9b6c03109b05626703 201 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 1.39E-50 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RMA_RS04060 b05c05496551fe9b6c03109b05626703 201 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 1.39E-50 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RMA_RS04060 b05c05496551fe9b6c03109b05626703 201 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 1.39E-50 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RMA_RS04060 b05c05496551fe9b6c03109b05626703 201 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 1.39E-50 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RMA_RS04060 b05c05496551fe9b6c03109b05626703 201 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 3 193 42.009 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RMA_RS04060 b05c05496551fe9b6c03109b05626703 201 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 90 101 - T 22-04-2016 IPR018215 ClpP, Ser active site RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 SUPERFAMILY SSF52540 161 327 1.57E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 PANTHER PTHR11702:SF3 1 329 4.8E-150 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 PANTHER PTHR11702 1 329 4.8E-150 T 22-04-2016 RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 325 5.1E-140 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 Gene3D G3DSA:3.40.50.300 161 327 2.4E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 Hamap MF_01454 GTPase Obg [obg]. 2 327 46.147 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 SUPERFAMILY SSF82051 2 158 5.23E-54 T 22-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 PIRSF PIRSF002401 1 330 1.1E-134 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 Pfam PF01018 GTP1/OBG 3 158 3.0E-58 T 22-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 22-04-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 Gene3D G3DSA:2.70.210.12 2 155 3.4E-54 T 22-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 4.3E-37 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 4.3E-37 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 4.3E-37 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 4.3E-37 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS07070 a950e151e14438080da9253a29cd3f06 330 Pfam PF01926 50S ribosome-binding GTPase 161 280 3.9E-25 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS06470 44e4a52040ae1bc966fbcc9ed49f3fc8 156 PRINTS PR01021 OMPA domain signature 99 115 1.2E-15 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RMA_RS06470 44e4a52040ae1bc966fbcc9ed49f3fc8 156 PRINTS PR01021 OMPA domain signature 84 99 1.2E-15 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RMA_RS06470 44e4a52040ae1bc966fbcc9ed49f3fc8 156 PRINTS PR01021 OMPA domain signature 54 76 1.2E-15 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RMA_RS06470 44e4a52040ae1bc966fbcc9ed49f3fc8 156 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 52 153 1.4E-40 T 22-04-2016 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 RMA_RS06470 44e4a52040ae1bc966fbcc9ed49f3fc8 156 Gene3D G3DSA:3.30.1330.60 50 153 6.4E-32 T 22-04-2016 IPR006665 OmpA-like domain RMA_RS06470 44e4a52040ae1bc966fbcc9ed49f3fc8 156 PANTHER PTHR30128:SF18 31 155 1.7E-44 T 22-04-2016 RMA_RS06470 44e4a52040ae1bc966fbcc9ed49f3fc8 156 Pfam PF00691 OmpA family 54 148 1.9E-22 T 22-04-2016 IPR006665 OmpA-like domain RMA_RS06470 44e4a52040ae1bc966fbcc9ed49f3fc8 156 SUPERFAMILY SSF103088 45 152 9.81E-33 T 22-04-2016 IPR006665 OmpA-like domain RMA_RS06470 44e4a52040ae1bc966fbcc9ed49f3fc8 156 PANTHER PTHR30128 31 155 1.7E-44 T 22-04-2016 RMA_RS04030 0ae4501a1b127a24088895c41a7846d5 266 PIRSF PIRSF000398 6 266 2.0E-55 T 22-04-2016 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 RMA_RS04030 0ae4501a1b127a24088895c41a7846d5 266 PANTHER PTHR30481 1 266 2.9E-55 T 22-04-2016 RMA_RS04030 0ae4501a1b127a24088895c41a7846d5 266 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 182 188 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RMA_RS04030 0ae4501a1b127a24088895c41a7846d5 266 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 15 251 7.8E-42 T 22-04-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RMA_RS04030 0ae4501a1b127a24088895c41a7846d5 266 Gene3D G3DSA:3.40.50.150 166 266 1.5E-45 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS04030 0ae4501a1b127a24088895c41a7846d5 266 Gene3D G3DSA:3.40.50.150 4 67 1.5E-45 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS04030 0ae4501a1b127a24088895c41a7846d5 266 TIGRFAM TIGR00571 dam: DNA adenine methylase 10 263 8.4E-59 T 22-04-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RMA_RS04030 0ae4501a1b127a24088895c41a7846d5 266 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 58 71 5.4E-15 T 22-04-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RMA_RS04030 0ae4501a1b127a24088895c41a7846d5 266 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 179 191 5.4E-15 T 22-04-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RMA_RS04030 0ae4501a1b127a24088895c41a7846d5 266 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 37 51 5.4E-15 T 22-04-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RMA_RS04030 0ae4501a1b127a24088895c41a7846d5 266 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 15 31 5.4E-15 T 22-04-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RMA_RS04030 0ae4501a1b127a24088895c41a7846d5 266 Gene3D G3DSA:1.10.1020.10 68 161 1.3E-17 T 22-04-2016 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 RMA_RS04030 0ae4501a1b127a24088895c41a7846d5 266 PANTHER PTHR30481:SF3 1 266 2.9E-55 T 22-04-2016 RMA_RS04030 0ae4501a1b127a24088895c41a7846d5 266 SUPERFAMILY SSF53335 10 266 6.41E-57 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS00180 ae2809863fa3e5e1c312ad7c5705550d 242 Pfam PF00119 ATP synthase A chain 31 235 5.5E-52 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RMA_RS00180 ae2809863fa3e5e1c312ad7c5705550d 242 PANTHER PTHR11410:SF6 5 242 1.6E-96 T 22-04-2016 RMA_RS00180 ae2809863fa3e5e1c312ad7c5705550d 242 Hamap MF_01393 ATP synthase subunit a [atpB]. 7 242 16.102 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RMA_RS00180 ae2809863fa3e5e1c312ad7c5705550d 242 PANTHER PTHR11410 5 242 1.6E-96 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RMA_RS00180 ae2809863fa3e5e1c312ad7c5705550d 242 Gene3D G3DSA:1.20.120.220 80 242 9.0E-50 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RMA_RS00180 ae2809863fa3e5e1c312ad7c5705550d 242 PRINTS PR00123 ATP synthase A subunit signature 87 103 4.8E-33 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RMA_RS00180 ae2809863fa3e5e1c312ad7c5705550d 242 PRINTS PR00123 ATP synthase A subunit signature 168 190 4.8E-33 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RMA_RS00180 ae2809863fa3e5e1c312ad7c5705550d 242 PRINTS PR00123 ATP synthase A subunit signature 222 237 4.8E-33 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RMA_RS00180 ae2809863fa3e5e1c312ad7c5705550d 242 PRINTS PR00123 ATP synthase A subunit signature 148 163 4.8E-33 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RMA_RS00180 ae2809863fa3e5e1c312ad7c5705550d 242 SUPERFAMILY SSF81336 80 236 1.96E-47 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RMA_RS00180 ae2809863fa3e5e1c312ad7c5705550d 242 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 6 239 6.8E-73 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RMA_RS00180 ae2809863fa3e5e1c312ad7c5705550d 242 ProSitePatterns PS00449 ATP synthase a subunit signature. 171 180 - T 22-04-2016 IPR023011 ATPase, F0 complex, subunit A, active site RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 PANTHER PTHR32108 3 332 5.3E-125 T 22-04-2016 RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 34 229 1.5E-20 T 22-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 8 319 34.365 T 22-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 29 319 4.4E-106 T 22-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 259 330 4.0E-36 T 22-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 SMART SM00662 28 235 3.3E-92 T 22-04-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 253 310 8.7E-25 T 22-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 Gene3D G3DSA:1.10.150.20 250 330 6.2E-35 T 22-04-2016 RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 SUPERFAMILY SSF55257 8 58 5.69E-28 T 22-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 SUPERFAMILY SSF55257 180 232 5.69E-28 T 22-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 Gene3D G3DSA:3.30.1360.10 22 71 1.5E-9 T 22-04-2016 RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 69 158 8.9E-23 T 22-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 SUPERFAMILY SSF56553 58 178 2.35E-38 T 22-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 SUPERFAMILY SSF47789 253 328 4.58E-27 T 22-04-2016 RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 Gene3D G3DSA:2.170.120.12 72 178 1.7E-40 T 22-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS05490 dcba73068f9bdc0633d04db9966bfa3a 340 PANTHER PTHR32108:SF0 3 332 5.3E-125 T 22-04-2016 RMA_RS01790 87f653109bc8f9aabde1a850fc120488 350 PANTHER PTHR30386:SF7 22 348 1.4E-64 T 22-04-2016 RMA_RS01790 87f653109bc8f9aabde1a850fc120488 350 SUPERFAMILY SSF111369 54 100 1.57E-12 T 22-04-2016 RMA_RS01790 87f653109bc8f9aabde1a850fc120488 350 SUPERFAMILY SSF111369 215 342 1.57E-12 T 22-04-2016 RMA_RS01790 87f653109bc8f9aabde1a850fc120488 350 SUPERFAMILY SSF111369 145 179 1.57E-12 T 22-04-2016 RMA_RS01790 87f653109bc8f9aabde1a850fc120488 350 PANTHER PTHR30386 22 348 1.4E-64 T 22-04-2016 RMA_RS01790 87f653109bc8f9aabde1a850fc120488 350 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 52 298 2.7E-15 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RMA_RS01790 87f653109bc8f9aabde1a850fc120488 350 Gene3D G3DSA:2.40.50.100 56 87 1.3E-11 T 22-04-2016 RMA_RS01790 87f653109bc8f9aabde1a850fc120488 350 Gene3D G3DSA:2.40.50.100 218 251 1.3E-11 T 22-04-2016 RMA_RS01790 87f653109bc8f9aabde1a850fc120488 350 Pfam PF00529 HlyD membrane-fusion protein of T1SS 28 345 2.7E-8 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RMA_RS00995 4841dc3dd41bbe28da04b3816d1891ed 239 SUPERFAMILY SSF56808 15 235 1.26E-76 T 22-04-2016 IPR023674 Ribosomal protein L1-like RMA_RS00995 4841dc3dd41bbe28da04b3816d1891ed 239 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 4 238 40.436 T 22-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RMA_RS00995 4841dc3dd41bbe28da04b3816d1891ed 239 Gene3D G3DSA:3.30.190.20 170 235 1.4E-40 T 22-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 RMA_RS00995 4841dc3dd41bbe28da04b3816d1891ed 239 Gene3D G3DSA:3.30.190.20 27 77 1.4E-40 T 22-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 RMA_RS00995 4841dc3dd41bbe28da04b3816d1891ed 239 PANTHER PTHR23105:SF5 28 238 4.3E-75 T 22-04-2016 RMA_RS00995 4841dc3dd41bbe28da04b3816d1891ed 239 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 14 237 1.2E-100 T 22-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RMA_RS00995 4841dc3dd41bbe28da04b3816d1891ed 239 ProSitePatterns PS01199 Ribosomal protein L1 signature. 129 148 - T 22-04-2016 IPR023673 Ribosomal protein L1, conserved site RMA_RS00995 4841dc3dd41bbe28da04b3816d1891ed 239 PIRSF PIRSF002155 2 236 2.2E-81 T 22-04-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 RMA_RS00995 4841dc3dd41bbe28da04b3816d1891ed 239 PANTHER PTHR23105 28 238 4.3E-75 T 22-04-2016 RMA_RS00995 4841dc3dd41bbe28da04b3816d1891ed 239 Pfam PF00687 Ribosomal protein L1p/L10e family 39 228 6.0E-47 T 22-04-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein RMA_RS00995 4841dc3dd41bbe28da04b3816d1891ed 239 Gene3D G3DSA:3.40.50.790 78 168 9.9E-39 T 22-04-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich RMA_RS02375 2144bcbc2696b38a52ffc14c96a2fc2b 167 Gene3D G3DSA:3.30.230.10 2 106 9.1E-16 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RMA_RS02375 2144bcbc2696b38a52ffc14c96a2fc2b 167 PANTHER PTHR32039 1 165 1.4E-46 T 22-04-2016 RMA_RS02375 2144bcbc2696b38a52ffc14c96a2fc2b 167 PANTHER PTHR32039:SF7 1 165 1.4E-46 T 22-04-2016 IPR004482 Mg chelatase-related protein RMA_RS02375 2144bcbc2696b38a52ffc14c96a2fc2b 167 Pfam PF13541 Subunit ChlI of Mg-chelatase 1 101 3.2E-30 T 22-04-2016 RMA_RS02375 2144bcbc2696b38a52ffc14c96a2fc2b 167 SUPERFAMILY SSF54211 2 127 9.48E-19 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 Pfam PF04998 RNA polymerase Rpb1, domain 5 760 1306 3.7E-68 T 22-04-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 Hamap MF_01323 DNA-directed RNA polymerase subunit gamma [rpoC1]. 12 636 32.108 T 22-04-2016 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 Gene3D G3DSA:2.40.50.100 1147 1202 1.9E-9 T 22-04-2016 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 390 5.5E-8 T 22-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 Pfam PF00623 RNA polymerase Rpb1, domain 2 393 485 3.7E-26 T 22-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 PANTHER PTHR19376:SF32 1169 1254 0.0 T 22-04-2016 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 PANTHER PTHR19376:SF32 3 937 0.0 T 22-04-2016 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 PANTHER PTHR19376:SF32 963 1149 0.0 T 22-04-2016 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 PANTHER PTHR19376:SF32 1295 1356 0.0 T 22-04-2016 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 SMART SM00663 235 514 3.7E-180 T 22-04-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 PANTHER PTHR19376 1169 1254 0.0 T 22-04-2016 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 PANTHER PTHR19376 3 937 0.0 T 22-04-2016 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 PANTHER PTHR19376 963 1149 0.0 T 22-04-2016 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 PANTHER PTHR19376 1295 1356 0.0 T 22-04-2016 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 Pfam PF04997 RNA polymerase Rpb1, domain 1 14 342 3.5E-90 T 22-04-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 SUPERFAMILY SSF64484 1125 1356 0.0 T 22-04-2016 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 SUPERFAMILY SSF64484 15 938 0.0 T 22-04-2016 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 Pfam PF05000 RNA polymerase Rpb1, domain 4 671 748 4.0E-16 T 22-04-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 Gene3D G3DSA:2.40.40.20 349 376 4.3E-36 T 22-04-2016 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 Gene3D G3DSA:2.40.40.20 417 489 4.3E-36 T 22-04-2016 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 14 1372 10.149 T 22-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 18 1014 0.0 T 22-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS01015 82a992bb20278f996b18da1e05d83733 1372 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 642 7.6E-29 T 22-04-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RMA_RS04270 1fcf0a5598aa039b7efa625d92403163 329 SUPERFAMILY SSF141986 150 195 1.96E-21 T 22-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain RMA_RS04270 1fcf0a5598aa039b7efa625d92403163 329 SUPERFAMILY SSF141986 222 314 1.96E-21 T 22-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain RMA_RS04270 1fcf0a5598aa039b7efa625d92403163 329 PANTHER PTHR30237 1 191 2.2E-33 T 22-04-2016 RMA_RS04270 1fcf0a5598aa039b7efa625d92403163 329 PANTHER PTHR30237 220 328 2.2E-33 T 22-04-2016 RMA_RS04270 1fcf0a5598aa039b7efa625d92403163 329 SUPERFAMILY SSF52317 4 160 1.46E-28 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RMA_RS04270 1fcf0a5598aa039b7efa625d92403163 329 PANTHER PTHR30237:SF2 1 191 2.2E-33 T 22-04-2016 RMA_RS04270 1fcf0a5598aa039b7efa625d92403163 329 PANTHER PTHR30237:SF2 220 328 2.2E-33 T 22-04-2016 RMA_RS04270 1fcf0a5598aa039b7efa625d92403163 329 Gene3D G3DSA:3.40.50.10740 6 161 2.1E-33 T 22-04-2016 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal domain RMA_RS04270 1fcf0a5598aa039b7efa625d92403163 329 Gene3D G3DSA:3.50.30.60 163 315 2.7E-36 T 22-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain RMA_RS04270 1fcf0a5598aa039b7efa625d92403163 329 Pfam PF02016 LD-carboxypeptidase 13 310 2.0E-51 T 22-04-2016 IPR003507 Peptidase family S66 RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 PANTHER PTHR11728 5 310 9.0E-62 T 22-04-2016 RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 PIRSF PIRSF000114 1 327 1.3E-86 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 6 159 7.4E-34 T 22-04-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 189 210 - T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 PANTHER PTHR11728:SF1 5 310 9.0E-62 T 22-04-2016 RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 Gene3D G3DSA:3.40.50.720 1 184 5.0E-39 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 SUPERFAMILY SSF48179 180 314 6.8E-31 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 181 314 7.3E-29 T 22-04-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 Gene3D G3DSA:1.10.1040.10 185 314 1.3E-31 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 5 326 27.479 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 SUPERFAMILY SSF51735 2 181 5.87E-36 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 242 259 1.8E-23 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 199 223 1.8E-23 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 134 154 1.8E-23 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 174 198 1.8E-23 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RMA_RS03340 e3c706e76b0cb1dbd951c10ecfc50deb 330 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 9 26 1.8E-23 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RMA_RS02730 49e6d30cb63c41808d2e594fd19c7b3f 505 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 54 443 3.7E-122 T 22-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 RMA_RS02730 49e6d30cb63c41808d2e594fd19c7b3f 505 SUPERFAMILY SSF56317 212 451 1.12E-38 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RMA_RS02730 49e6d30cb63c41808d2e594fd19c7b3f 505 Pfam PF00795 Carbon-nitrogen hydrolase 216 466 1.9E-38 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RMA_RS02730 49e6d30cb63c41808d2e594fd19c7b3f 505 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 1 481 21.626 T 22-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 RMA_RS02730 49e6d30cb63c41808d2e594fd19c7b3f 505 PANTHER PTHR23088:SF29 200 488 1.2E-60 T 22-04-2016 RMA_RS02730 49e6d30cb63c41808d2e594fd19c7b3f 505 Gene3D G3DSA:3.60.110.10 212 451 2.0E-25 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RMA_RS02730 49e6d30cb63c41808d2e594fd19c7b3f 505 PANTHER PTHR23088 200 488 1.2E-60 T 22-04-2016 RMA_RS05330 86fa94883def8766389101fc3176ffd1 514 SUPERFAMILY SSF52096 7 258 2.04E-76 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS05330 86fa94883def8766389101fc3176ffd1 514 SUPERFAMILY SSF52096 255 514 1.27E-88 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS05330 86fa94883def8766389101fc3176ffd1 514 Gene3D G3DSA:3.90.226.10 257 514 8.3E-101 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS05330 86fa94883def8766389101fc3176ffd1 514 Gene3D G3DSA:3.90.226.10 10 256 5.7E-83 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS05330 86fa94883def8766389101fc3176ffd1 514 Pfam PF01039 Carboxyl transferase domain 31 512 1.2E-199 T 22-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RMA_RS05330 86fa94883def8766389101fc3176ffd1 514 PANTHER PTHR22855:SF37 1 514 0.0 T 22-04-2016 RMA_RS05330 86fa94883def8766389101fc3176ffd1 514 PANTHER PTHR22855 1 514 0.0 T 22-04-2016 RMA_RS03240 267dc7861bc27f6e3b43c5bdfecb623b 294 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 4 289 55.329 T 22-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS03240 267dc7861bc27f6e3b43c5bdfecb623b 294 SMART SM01130 4 291 1.3E-109 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RMA_RS03240 267dc7861bc27f6e3b43c5bdfecb623b 294 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 135 165 - T 22-04-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS03240 267dc7861bc27f6e3b43c5bdfecb623b 294 Pfam PF00701 Dihydrodipicolinate synthetase family 5 288 1.3E-77 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RMA_RS03240 267dc7861bc27f6e3b43c5bdfecb623b 294 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 40 57 - T 22-04-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS03240 267dc7861bc27f6e3b43c5bdfecb623b 294 PANTHER PTHR12128 1 292 6.1E-112 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RMA_RS03240 267dc7861bc27f6e3b43c5bdfecb623b 294 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 8 289 1.0E-108 T 22-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS03240 267dc7861bc27f6e3b43c5bdfecb623b 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 7.2E-22 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RMA_RS03240 267dc7861bc27f6e3b43c5bdfecb623b 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 130 147 7.2E-22 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RMA_RS03240 267dc7861bc27f6e3b43c5bdfecb623b 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 7.2E-22 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RMA_RS03240 267dc7861bc27f6e3b43c5bdfecb623b 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 105 121 7.2E-22 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RMA_RS03240 267dc7861bc27f6e3b43c5bdfecb623b 294 SUPERFAMILY SSF51569 4 290 3.98E-89 T 22-04-2016 RMA_RS03240 267dc7861bc27f6e3b43c5bdfecb623b 294 PANTHER PTHR12128:SF34 1 292 6.1E-112 T 22-04-2016 RMA_RS03240 267dc7861bc27f6e3b43c5bdfecb623b 294 Gene3D G3DSA:3.20.20.70 2 292 1.5E-99 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RMA_RS03240 267dc7861bc27f6e3b43c5bdfecb623b 294 PIRSF PIRSF001365 1 293 2.2E-82 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 261 372 4.5E-25 T 22-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 PANTHER PTHR22573 1 462 3.0E-135 T 22-04-2016 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 Gene3D G3DSA:3.40.120.10 175 252 1.3E-34 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 22-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 207 220 5.6E-22 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 5.6E-22 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 173 192 5.6E-22 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 5.6E-22 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 SUPERFAMILY SSF53738 261 367 2.2E-33 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 Gene3D G3DSA:3.40.120.10 255 370 9.1E-42 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 PANTHER PTHR22573:SF28 1 462 3.0E-135 T 22-04-2016 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 6 134 7.9E-33 T 22-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 160 255 5.7E-23 T 22-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 SUPERFAMILY SSF53738 5 137 2.24E-35 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 390 445 1.3E-6 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 SUPERFAMILY SSF55957 370 455 5.41E-19 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 Gene3D G3DSA:3.30.310.50 372 456 3.4E-22 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 Gene3D G3DSA:3.40.120.10 4 140 1.1E-33 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03535 aca0b0e101ff75692ca0290817d3bbd4 462 SUPERFAMILY SSF53738 158 258 2.75E-27 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 109 117 2.0E-19 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 2.0E-19 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 203 219 2.0E-19 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 148 172 2.0E-19 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 293 3.3E-31 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 7.4E-19 T 22-04-2016 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 7.4E-19 T 22-04-2016 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 7.4E-19 T 22-04-2016 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 7.4E-19 T 22-04-2016 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 Gene3D G3DSA:3.50.50.60 3 123 1.9E-39 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 Gene3D G3DSA:3.50.50.60 247 317 1.9E-39 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 Hamap MF_01685 Ferredoxin--NADP reductase. 3 329 40.547 T 22-04-2016 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101|MetaCyc: PWY-7230 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 PANTHER PTHR22912:SF158 1 305 1.0E-91 T 22-04-2016 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 SUPERFAMILY SSF51905 1 304 9.59E-41 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 PANTHER PTHR22912 1 305 1.0E-91 T 22-04-2016 RMA_RS03445 359ca6004197fd55102b127da5b8f22d 334 Gene3D G3DSA:3.50.50.60 124 242 3.6E-18 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS00850 d2fce74d5854e83f815abf13a5cd14c9 234 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 6 233 2.8E-71 T 22-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RMA_RS00850 d2fce74d5854e83f815abf13a5cd14c9 234 PANTHER PTHR32125 8 234 1.7E-70 T 22-04-2016 RMA_RS00850 d2fce74d5854e83f815abf13a5cd14c9 234 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 26 228 3.8E-47 T 22-04-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RMA_RS00850 d2fce74d5854e83f815abf13a5cd14c9 234 Gene3D G3DSA:1.10.1270.20 170 233 9.9E-23 T 22-04-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RMA_RS00850 d2fce74d5854e83f815abf13a5cd14c9 234 PIRSF PIRSF000386 4 234 4.5E-76 T 22-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RMA_RS00850 d2fce74d5854e83f815abf13a5cd14c9 234 Gene3D G3DSA:3.40.1280.10 4 162 5.5E-67 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RMA_RS00850 d2fce74d5854e83f815abf13a5cd14c9 234 PANTHER PTHR32125:SF1 8 234 1.7E-70 T 22-04-2016 RMA_RS00850 d2fce74d5854e83f815abf13a5cd14c9 234 SUPERFAMILY SSF75217 4 233 2.16E-81 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases RMA_RS00850 d2fce74d5854e83f815abf13a5cd14c9 234 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 234 87.717 T 22-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RMA_RS05200 05c2d073d6de1b28bbb6f21173b21984 117 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RMA_RS05200 05c2d073d6de1b28bbb6f21173b21984 117 PRINTS PR00062 Ribosomal protein L20 signature 75 101 7.9E-39 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RMA_RS05200 05c2d073d6de1b28bbb6f21173b21984 117 PRINTS PR00062 Ribosomal protein L20 signature 42 71 7.9E-39 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RMA_RS05200 05c2d073d6de1b28bbb6f21173b21984 117 PRINTS PR00062 Ribosomal protein L20 signature 12 41 7.9E-39 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RMA_RS05200 05c2d073d6de1b28bbb6f21173b21984 117 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.4E-50 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RMA_RS05200 05c2d073d6de1b28bbb6f21173b21984 117 Gene3D G3DSA:1.10.1900.20 55 116 5.5E-29 T 22-04-2016 RMA_RS05200 05c2d073d6de1b28bbb6f21173b21984 117 SUPERFAMILY SSF74731 2 115 1.7E-47 T 22-04-2016 RMA_RS05200 05c2d073d6de1b28bbb6f21173b21984 117 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 28.802 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RMA_RS05200 05c2d073d6de1b28bbb6f21173b21984 117 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 72 4.0E-17 T 22-04-2016 RMA_RS05200 05c2d073d6de1b28bbb6f21173b21984 117 Pfam PF00453 Ribosomal protein L20 3 108 2.9E-47 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RMA_RS05200 05c2d073d6de1b28bbb6f21173b21984 117 PANTHER PTHR10986 2 115 1.1E-59 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RMA_RS01900 6691198af5085f5784e3451395de0c84 326 SUPERFAMILY SSF52922 188 322 6.02E-41 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RMA_RS01900 6691198af5085f5784e3451395de0c84 326 Pfam PF02779 Transketolase, pyrimidine binding domain 2 178 1.2E-50 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RMA_RS01900 6691198af5085f5784e3451395de0c84 326 Pfam PF02780 Transketolase, C-terminal domain 192 314 7.5E-39 T 22-04-2016 IPR033248 Transketolase, C-terminal domain RMA_RS01900 6691198af5085f5784e3451395de0c84 326 Gene3D G3DSA:3.40.50.920 195 320 4.3E-45 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RMA_RS01900 6691198af5085f5784e3451395de0c84 326 PANTHER PTHR11624 2 324 4.4E-169 T 22-04-2016 IPR033247 Transketolase family RMA_RS01900 6691198af5085f5784e3451395de0c84 326 SUPERFAMILY SSF52518 3 201 5.89E-70 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RMA_RS01900 6691198af5085f5784e3451395de0c84 326 Gene3D G3DSA:3.40.50.970 2 194 1.0E-94 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RMA_RS01900 6691198af5085f5784e3451395de0c84 326 SMART SM00861 3 178 2.3E-60 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 Gene3D G3DSA:1.10.10.400 238 313 1.5E-18 T 22-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 Gene3D G3DSA:3.30.1370.10 553 620 1.6E-22 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 Gene3D G3DSA:2.40.50.140 621 695 1.5E-19 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 SMART SM00322 553 618 1.7E-13 T 22-04-2016 IPR004087 K Homology domain GO:0003676 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 Pfam PF01138 3' exoribonuclease family, domain 1 16 140 3.2E-17 T 22-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 Pfam PF01138 3' exoribonuclease family, domain 1 325 457 2.3E-18 T 22-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 SUPERFAMILY SSF54211 2 144 3.54E-46 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 Pfam PF00013 KH domain 556 614 1.3E-11 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 SUPERFAMILY SSF54791 556 641 2.47E-20 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 11 692 0.0 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 Pfam PF00575 S1 RNA binding domain 619 691 5.2E-15 T 22-04-2016 IPR003029 S1 domain GO:0003676 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 SUPERFAMILY SSF55666 451 550 1.4E-27 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 SMART SM00316 621 691 7.6E-20 T 22-04-2016 IPR022967 RNA-binding domain, S1 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 694 29.176 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 Pfam PF03725 3' exoribonuclease family, domain 2 148 210 2.7E-14 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 SUPERFAMILY SSF54211 300 469 1.37E-42 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 Gene3D G3DSA:3.30.230.70 314 544 1.3E-82 T 22-04-2016 IPR027408 PNPase/RNase PH domain RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 Gene3D G3DSA:3.30.230.70 3 225 1.0E-75 T 22-04-2016 IPR027408 PNPase/RNase PH domain RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 PIRSF PIRSF005499 1 725 2.0E-296 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 SUPERFAMILY SSF46915 238 321 2.43E-15 T 22-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 PANTHER PTHR11252 1 741 0.0 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 SUPERFAMILY SSF55666 149 234 9.03E-25 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 241 321 1.1E-21 T 22-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 SUPERFAMILY SSF50249 621 698 4.58E-18 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS03560 c772d80111d77ef011c5bff176ba77fe 745 PANTHER PTHR11252:SF0 1 741 0.0 T 22-04-2016 RMA_RS07295 234e70c4a59cd75e5a31d1be6ea923f3 107 SUPERFAMILY SSF82607 8 101 1.06E-29 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RMA_RS07295 234e70c4a59cd75e5a31d1be6ea923f3 107 Gene3D G3DSA:3.30.1310.10 1 107 6.9E-40 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RMA_RS07295 234e70c4a59cd75e5a31d1be6ea923f3 107 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 2 96 20.405 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RMA_RS07295 234e70c4a59cd75e5a31d1be6ea923f3 107 PIRSF PIRSF004555 1 107 5.3E-36 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RMA_RS07295 234e70c4a59cd75e5a31d1be6ea923f3 107 Pfam PF02575 YbaB/EbfC DNA-binding family 8 97 3.5E-30 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RMA_RS07295 234e70c4a59cd75e5a31d1be6ea923f3 107 PANTHER PTHR33449 1 107 1.9E-34 T 22-04-2016 RMA_RS07295 234e70c4a59cd75e5a31d1be6ea923f3 107 PANTHER PTHR33449:SF1 1 107 1.9E-34 T 22-04-2016 RMA_RS07295 234e70c4a59cd75e5a31d1be6ea923f3 107 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 102 7.3E-27 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RMA_RS05785 14f410156a8faf405cb08ccdf9a62cef 279 SMART SM01232 132 224 7.8E-43 T 22-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RMA_RS05785 14f410156a8faf405cb08ccdf9a62cef 279 SUPERFAMILY SSF46946 133 225 6.41E-28 T 22-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RMA_RS05785 14f410156a8faf405cb08ccdf9a62cef 279 Pfam PF06827 Zinc finger found in FPG and IleRS 244 271 2.6E-7 T 22-04-2016 IPR010663 Zinc finger, FPG/IleRS-type RMA_RS05785 14f410156a8faf405cb08ccdf9a62cef 279 ProSitePatterns PS01242 Zinc finger FPG-type signature. 247 271 - T 22-04-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 RMA_RS05785 14f410156a8faf405cb08ccdf9a62cef 279 SUPERFAMILY SSF57716 220 271 1.68E-15 T 22-04-2016 RMA_RS05785 14f410156a8faf405cb08ccdf9a62cef 279 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 272 41.281 T 22-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RMA_RS05785 14f410156a8faf405cb08ccdf9a62cef 279 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 132 221 1.5E-25 T 22-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RMA_RS05785 14f410156a8faf405cb08ccdf9a62cef 279 Gene3D G3DSA:3.20.190.10 2 132 1.6E-32 T 22-04-2016 RMA_RS05785 14f410156a8faf405cb08ccdf9a62cef 279 SUPERFAMILY SSF81624 2 139 3.66E-35 T 22-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RMA_RS05785 14f410156a8faf405cb08ccdf9a62cef 279 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 271 9.0E-90 T 22-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RMA_RS05785 14f410156a8faf405cb08ccdf9a62cef 279 Gene3D G3DSA:1.10.8.50 133 271 1.4E-48 T 22-04-2016 RMA_RS05785 14f410156a8faf405cb08ccdf9a62cef 279 SMART SM00898 2 117 3.4E-41 T 22-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RMA_RS05785 14f410156a8faf405cb08ccdf9a62cef 279 PANTHER PTHR22993:SF15 1 271 3.4E-104 T 22-04-2016 RMA_RS05785 14f410156a8faf405cb08ccdf9a62cef 279 PANTHER PTHR22993 1 271 3.4E-104 T 22-04-2016 RMA_RS05785 14f410156a8faf405cb08ccdf9a62cef 279 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 116 1.4E-30 T 22-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RMA_RS00885 706620efdc7b6005ef89613afd02181d 343 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 4 52 1.3E-25 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS00885 706620efdc7b6005ef89613afd02181d 343 Hamap MF_00367 GTPase Era [era]. 54 343 30.725 T 22-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 RMA_RS00885 706620efdc7b6005ef89613afd02181d 343 Gene3D G3DSA:3.30.300.20 235 338 4.2E-35 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta RMA_RS00885 706620efdc7b6005ef89613afd02181d 343 SUPERFAMILY SSF52540 58 250 5.32E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00885 706620efdc7b6005ef89613afd02181d 343 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 55 215 1.7E-26 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RMA_RS00885 706620efdc7b6005ef89613afd02181d 343 TIGRFAM TIGR00436 era: GTP-binding protein Era 58 326 1.5E-68 T 22-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 RMA_RS00885 706620efdc7b6005ef89613afd02181d 343 PANTHER PTHR11649:SF3 44 341 3.1E-100 T 22-04-2016 RMA_RS00885 706620efdc7b6005ef89613afd02181d 343 Pfam PF07650 KH domain 255 331 6.8E-17 T 22-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 RMA_RS00885 706620efdc7b6005ef89613afd02181d 343 SUPERFAMILY SSF54814 228 340 1.31E-35 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RMA_RS00885 706620efdc7b6005ef89613afd02181d 343 Pfam PF01926 50S ribosome-binding GTPase 59 173 9.7E-24 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS00885 706620efdc7b6005ef89613afd02181d 343 Gene3D G3DSA:3.40.50.300 44 217 5.1E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00885 706620efdc7b6005ef89613afd02181d 343 PANTHER PTHR11649 44 341 3.1E-100 T 22-04-2016 RMA_RS02345 36c7e03c2c9c8eae610e9af0736b1e3f 338 Gene3D G3DSA:3.30.360.10 145 316 1.9E-67 T 22-04-2016 RMA_RS02345 36c7e03c2c9c8eae610e9af0736b1e3f 338 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 4 334 33.757 T 22-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RMA_RS02345 36c7e03c2c9c8eae610e9af0736b1e3f 338 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 6 336 4.0E-155 T 22-04-2016 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RMA_RS02345 36c7e03c2c9c8eae610e9af0736b1e3f 338 Gene3D G3DSA:3.40.50.720 1 144 3.3E-54 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS02345 36c7e03c2c9c8eae610e9af0736b1e3f 338 SUPERFAMILY SSF55347 131 321 4.56E-64 T 22-04-2016 RMA_RS02345 36c7e03c2c9c8eae610e9af0736b1e3f 338 SUPERFAMILY SSF51735 5 159 2.37E-46 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS02345 36c7e03c2c9c8eae610e9af0736b1e3f 338 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 320 1.9E-44 T 22-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RMA_RS02345 36c7e03c2c9c8eae610e9af0736b1e3f 338 PIRSF PIRSF000148 4 338 8.9E-118 T 22-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RMA_RS02345 36c7e03c2c9c8eae610e9af0736b1e3f 338 PANTHER PTHR10174:SF2 67 338 6.0E-61 T 22-04-2016 RMA_RS02345 36c7e03c2c9c8eae610e9af0736b1e3f 338 PANTHER PTHR10174 67 338 6.0E-61 T 22-04-2016 RMA_RS02345 36c7e03c2c9c8eae610e9af0736b1e3f 338 SMART SM00859 6 121 6.0E-33 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RMA_RS02345 36c7e03c2c9c8eae610e9af0736b1e3f 338 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 120 1.7E-29 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 4 61 1.3E-20 T 22-04-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 Gene3D G3DSA:2.40.50.140 67 127 6.9E-22 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 Gene3D G3DSA:2.40.50.140 130 187 6.7E-23 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 Gene3D G3DSA:2.30.30.30 1 65 1.8E-20 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 TIGRFAM TIGR00038 efp: translation elongation factor P 3 187 5.1E-68 T 22-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 PIRSF PIRSF005901 1 188 6.5E-65 T 22-04-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 SUPERFAMILY SSF50249 67 127 2.83E-16 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 SUPERFAMILY SSF50104 3 65 2.41E-15 T 22-04-2016 IPR008991 Translation protein SH3-like domain RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 PANTHER PTHR30053 1 188 1.4E-72 T 22-04-2016 RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 SUPERFAMILY SSF50249 130 187 4.91E-17 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 123 1.2E-19 T 22-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 SMART SM00841 131 186 1.0E-26 T 22-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 SMART SM01185 69 123 2.3E-22 T 22-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 22-04-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 8.5E-21 T 22-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 RMA_RS01765 8bd1b22d5e0f4fea34ae0c7eafc725b5 188 Hamap MF_00141 Elongation factor P [efp]. 2 187 45.554 T 22-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 SUPERFAMILY SSF50249 4 108 1.2E-30 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 Pfam PF02938 GAD domain 315 407 3.6E-21 T 22-04-2016 IPR029351 GAD domain RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 5 590 1.4E-191 T 22-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 Gene3D G3DSA:3.30.930.10 137 283 1.4E-98 T 22-04-2016 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 Gene3D G3DSA:3.30.930.10 417 591 1.4E-98 T 22-04-2016 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 SUPERFAMILY SSF55261 296 422 1.28E-35 T 22-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 Gene3D G3DSA:3.30.1360.30 284 416 9.7E-44 T 22-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 4 571 33.93 T 22-04-2016 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 PANTHER PTHR22594:SF5 373 579 1.1E-205 T 22-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 PANTHER PTHR22594:SF5 4 304 1.1E-205 T 22-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 PANTHER PTHR22594 373 579 1.1E-205 T 22-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 PANTHER PTHR22594 4 304 1.1E-205 T 22-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 Pfam PF01336 OB-fold nucleic acid binding domain 21 97 3.1E-13 T 22-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 Pfam PF00152 tRNA synthetases class II (D, K and N) 123 565 8.2E-92 T 22-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 SUPERFAMILY SSF55681 428 590 3.06E-95 T 22-04-2016 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 SUPERFAMILY SSF55681 114 299 3.06E-95 T 22-04-2016 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 PRINTS PR01042 Aspartyl-tRNA synthetase signature 482 498 2.1E-21 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 PRINTS PR01042 Aspartyl-tRNA synthetase signature 195 207 2.1E-21 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 PRINTS PR01042 Aspartyl-tRNA synthetase signature 526 540 2.1E-21 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 PRINTS PR01042 Aspartyl-tRNA synthetase signature 212 225 2.1E-21 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS01040 57bc71a4873ec65c1870ecf621a41535 602 Gene3D G3DSA:2.40.50.140 4 110 1.8E-34 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS06540 78c5eecf595ad42ce2c00aade9919a70 434 Gene3D G3DSA:3.40.50.720 230 433 8.3E-72 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS06540 78c5eecf595ad42ce2c00aade9919a70 434 PIRSF PIRSF000124 1 432 8.1E-134 T 22-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RMA_RS06540 78c5eecf595ad42ce2c00aade9919a70 434 PANTHER PTHR11374 1 431 1.0E-223 T 22-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RMA_RS06540 78c5eecf595ad42ce2c00aade9919a70 434 PIRSF PIRSF500134 1 434 3.2E-156 T 22-04-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 RMA_RS06540 78c5eecf595ad42ce2c00aade9919a70 434 SUPERFAMILY SSF52413 304 428 3.66E-35 T 22-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RMA_RS06540 78c5eecf595ad42ce2c00aade9919a70 434 Gene3D G3DSA:1.20.5.100 202 227 3.2E-17 T 22-04-2016 RMA_RS06540 78c5eecf595ad42ce2c00aade9919a70 434 PANTHER PTHR11374:SF18 1 431 1.0E-223 T 22-04-2016 RMA_RS06540 78c5eecf595ad42ce2c00aade9919a70 434 SMART SM00984 314 417 7.2E-41 T 22-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RMA_RS06540 78c5eecf595ad42ce2c00aade9919a70 434 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 181 6.5E-64 T 22-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 RMA_RS06540 78c5eecf595ad42ce2c00aade9919a70 434 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 314 417 5.3E-31 T 22-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RMA_RS06540 78c5eecf595ad42ce2c00aade9919a70 434 SUPERFAMILY SSF51735 1 187 9.21E-48 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS06540 78c5eecf595ad42ce2c00aade9919a70 434 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 199 290 5.9E-35 T 22-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 RMA_RS06540 78c5eecf595ad42ce2c00aade9919a70 434 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 413 2.2E-147 T 22-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RMA_RS06540 78c5eecf595ad42ce2c00aade9919a70 434 SUPERFAMILY SSF48179 198 291 6.46E-30 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RMA_RS06540 78c5eecf595ad42ce2c00aade9919a70 434 Gene3D G3DSA:3.40.50.720 1 201 2.1E-68 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS02445 c062c988641353c429a7fd93cbef4b87 145 SMART SM01321 11 130 6.8E-43 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS02445 c062c988641353c429a7fd93cbef4b87 145 Pfam PF01797 Transposase IS200 like 12 130 1.1E-39 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS02445 c062c988641353c429a7fd93cbef4b87 145 SUPERFAMILY SSF143422 1 130 4.58E-45 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS02445 c062c988641353c429a7fd93cbef4b87 145 PANTHER PTHR33360 2 135 3.4E-50 T 22-04-2016 RMA_RS02445 c062c988641353c429a7fd93cbef4b87 145 Gene3D G3DSA:3.30.70.1290 1 132 2.5E-48 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS06010 c062c988641353c429a7fd93cbef4b87 145 SMART SM01321 11 130 6.8E-43 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS06010 c062c988641353c429a7fd93cbef4b87 145 Pfam PF01797 Transposase IS200 like 12 130 1.1E-39 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS06010 c062c988641353c429a7fd93cbef4b87 145 SUPERFAMILY SSF143422 1 130 4.58E-45 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS06010 c062c988641353c429a7fd93cbef4b87 145 PANTHER PTHR33360 2 135 3.4E-50 T 22-04-2016 RMA_RS06010 c062c988641353c429a7fd93cbef4b87 145 Gene3D G3DSA:3.30.70.1290 1 132 2.5E-48 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05245 c062c988641353c429a7fd93cbef4b87 145 SMART SM01321 11 130 6.8E-43 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05245 c062c988641353c429a7fd93cbef4b87 145 Pfam PF01797 Transposase IS200 like 12 130 1.1E-39 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05245 c062c988641353c429a7fd93cbef4b87 145 SUPERFAMILY SSF143422 1 130 4.58E-45 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05245 c062c988641353c429a7fd93cbef4b87 145 PANTHER PTHR33360 2 135 3.4E-50 T 22-04-2016 RMA_RS05245 c062c988641353c429a7fd93cbef4b87 145 Gene3D G3DSA:3.30.70.1290 1 132 2.5E-48 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05380 c062c988641353c429a7fd93cbef4b87 145 SMART SM01321 11 130 6.8E-43 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05380 c062c988641353c429a7fd93cbef4b87 145 Pfam PF01797 Transposase IS200 like 12 130 1.1E-39 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05380 c062c988641353c429a7fd93cbef4b87 145 SUPERFAMILY SSF143422 1 130 4.58E-45 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05380 c062c988641353c429a7fd93cbef4b87 145 PANTHER PTHR33360 2 135 3.4E-50 T 22-04-2016 RMA_RS05380 c062c988641353c429a7fd93cbef4b87 145 Gene3D G3DSA:3.30.70.1290 1 132 2.5E-48 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS01730 c062c988641353c429a7fd93cbef4b87 145 SMART SM01321 11 130 6.8E-43 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS01730 c062c988641353c429a7fd93cbef4b87 145 Pfam PF01797 Transposase IS200 like 12 130 1.1E-39 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS01730 c062c988641353c429a7fd93cbef4b87 145 SUPERFAMILY SSF143422 1 130 4.58E-45 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS01730 c062c988641353c429a7fd93cbef4b87 145 PANTHER PTHR33360 2 135 3.4E-50 T 22-04-2016 RMA_RS01730 c062c988641353c429a7fd93cbef4b87 145 Gene3D G3DSA:3.30.70.1290 1 132 2.5E-48 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05235 c062c988641353c429a7fd93cbef4b87 145 SMART SM01321 11 130 6.8E-43 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05235 c062c988641353c429a7fd93cbef4b87 145 Pfam PF01797 Transposase IS200 like 12 130 1.1E-39 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05235 c062c988641353c429a7fd93cbef4b87 145 SUPERFAMILY SSF143422 1 130 4.58E-45 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05235 c062c988641353c429a7fd93cbef4b87 145 PANTHER PTHR33360 2 135 3.4E-50 T 22-04-2016 RMA_RS05235 c062c988641353c429a7fd93cbef4b87 145 Gene3D G3DSA:3.30.70.1290 1 132 2.5E-48 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05800 c062c988641353c429a7fd93cbef4b87 145 SMART SM01321 11 130 6.8E-43 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05800 c062c988641353c429a7fd93cbef4b87 145 Pfam PF01797 Transposase IS200 like 12 130 1.1E-39 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05800 c062c988641353c429a7fd93cbef4b87 145 SUPERFAMILY SSF143422 1 130 4.58E-45 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05800 c062c988641353c429a7fd93cbef4b87 145 PANTHER PTHR33360 2 135 3.4E-50 T 22-04-2016 RMA_RS05800 c062c988641353c429a7fd93cbef4b87 145 Gene3D G3DSA:3.30.70.1290 1 132 2.5E-48 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05340 c062c988641353c429a7fd93cbef4b87 145 SMART SM01321 11 130 6.8E-43 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05340 c062c988641353c429a7fd93cbef4b87 145 Pfam PF01797 Transposase IS200 like 12 130 1.1E-39 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05340 c062c988641353c429a7fd93cbef4b87 145 SUPERFAMILY SSF143422 1 130 4.58E-45 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05340 c062c988641353c429a7fd93cbef4b87 145 PANTHER PTHR33360 2 135 3.4E-50 T 22-04-2016 RMA_RS05340 c062c988641353c429a7fd93cbef4b87 145 Gene3D G3DSA:3.30.70.1290 1 132 2.5E-48 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS02395 c062c988641353c429a7fd93cbef4b87 145 SMART SM01321 11 130 6.8E-43 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS02395 c062c988641353c429a7fd93cbef4b87 145 Pfam PF01797 Transposase IS200 like 12 130 1.1E-39 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS02395 c062c988641353c429a7fd93cbef4b87 145 SUPERFAMILY SSF143422 1 130 4.58E-45 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS02395 c062c988641353c429a7fd93cbef4b87 145 PANTHER PTHR33360 2 135 3.4E-50 T 22-04-2016 RMA_RS02395 c062c988641353c429a7fd93cbef4b87 145 Gene3D G3DSA:3.30.70.1290 1 132 2.5E-48 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS03960 c062c988641353c429a7fd93cbef4b87 145 SMART SM01321 11 130 6.8E-43 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS03960 c062c988641353c429a7fd93cbef4b87 145 Pfam PF01797 Transposase IS200 like 12 130 1.1E-39 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS03960 c062c988641353c429a7fd93cbef4b87 145 SUPERFAMILY SSF143422 1 130 4.58E-45 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS03960 c062c988641353c429a7fd93cbef4b87 145 PANTHER PTHR33360 2 135 3.4E-50 T 22-04-2016 RMA_RS03960 c062c988641353c429a7fd93cbef4b87 145 Gene3D G3DSA:3.30.70.1290 1 132 2.5E-48 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS05500 db9dd8ab8ddc0e8759bfdf052293a213 125 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 2.4E-50 T 22-04-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05500 db9dd8ab8ddc0e8759bfdf052293a213 125 Pfam PF00416 Ribosomal protein S13/S18 3 109 7.0E-30 T 22-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05500 db9dd8ab8ddc0e8759bfdf052293a213 125 Gene3D G3DSA:1.10.8.50 2 72 1.5E-28 T 22-04-2016 RMA_RS05500 db9dd8ab8ddc0e8759bfdf052293a213 125 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 22-04-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 RMA_RS05500 db9dd8ab8ddc0e8759bfdf052293a213 125 SUPERFAMILY SSF46946 2 122 2.88E-43 T 22-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RMA_RS05500 db9dd8ab8ddc0e8759bfdf052293a213 125 Gene3D G3DSA:4.10.910.10 73 123 9.1E-23 T 22-04-2016 IPR027437 30s ribosomal protein S13, C-terminal RMA_RS05500 db9dd8ab8ddc0e8759bfdf052293a213 125 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 120 26.368 T 22-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05500 db9dd8ab8ddc0e8759bfdf052293a213 125 PIRSF PIRSF002134 1 125 9.2E-43 T 22-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05500 db9dd8ab8ddc0e8759bfdf052293a213 125 PANTHER PTHR10871 2 124 1.2E-58 T 22-04-2016 RMA_RS04260 6409c5b111fb3f41dea198b4bb91eabe 132 Gene3D G3DSA:3.30.565.10 55 88 1.8E-4 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS04260 6409c5b111fb3f41dea198b4bb91eabe 132 SMART SM00388 1 69 4.9E-18 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS04260 6409c5b111fb3f41dea198b4bb91eabe 132 SUPERFAMILY SSF47384 2 67 2.94E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS04260 6409c5b111fb3f41dea198b4bb91eabe 132 PANTHER PTHR24423 1 114 5.6E-15 T 22-04-2016 RMA_RS04260 6409c5b111fb3f41dea198b4bb91eabe 132 Pfam PF00512 His Kinase A (phospho-acceptor) domain 2 67 2.9E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS04260 6409c5b111fb3f41dea198b4bb91eabe 132 Gene3D G3DSA:1.10.287.130 2 54 6.9E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 Gene3D G3DSA:3.30.420.40 151 205 1.5E-8 T 22-04-2016 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 Gene3D G3DSA:3.30.420.40 4 81 1.5E-8 T 22-04-2016 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 SUPERFAMILY SSF53067 195 377 6.07E-31 T 22-04-2016 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 PANTHER PTHR32432 1 378 3.1E-82 T 22-04-2016 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 Pfam PF02491 SHS2 domain inserted in FTSA 83 158 5.4E-18 T 22-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 PANTHER PTHR32432:SF4 1 378 3.1E-82 T 22-04-2016 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 SMART SM00842 8 193 1.3E-61 T 22-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 PIRSF PIRSF003101 1 411 1.8E-102 T 22-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 8 378 1.2E-126 T 22-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 Pfam PF14450 Cell division protein FtsA 205 359 1.8E-15 T 22-04-2016 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 Gene3D G3DSA:3.90.640.10 232 298 1.1E-13 T 22-04-2016 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 Hamap MF_02033 Cell division protein FtsA [ftsA]. 4 411 23.347 T 22-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 Gene3D G3DSA:3.30.1490.110 85 150 1.1E-20 T 22-04-2016 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 SUPERFAMILY SSF53067 8 194 3.89E-40 T 22-04-2016 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 Gene3D G3DSA:3.30.420.40 206 231 5.5E-21 T 22-04-2016 RMA_RS01840 40212c9eddf303581227aeb14c8de574 411 Gene3D G3DSA:3.30.420.40 299 353 5.5E-21 T 22-04-2016 RMA_RS04985 58d57bcd94624c26845d48905de7d85b 81 Pfam PF13328 HD domain 2 78 2.2E-11 T 22-04-2016 IPR003607 HD/PDEase domain RMA_RS04985 58d57bcd94624c26845d48905de7d85b 81 PANTHER PTHR21262 1 81 9.7E-22 T 22-04-2016 RMA_RS04985 58d57bcd94624c26845d48905de7d85b 81 PANTHER PTHR21262:SF0 1 81 9.7E-22 T 22-04-2016 RMA_RS04985 58d57bcd94624c26845d48905de7d85b 81 SUPERFAMILY SSF109604 1 80 1.13E-23 T 22-04-2016 RMA_RS01070 1452436200c5461ed058685e97d28108 494 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 152 166 - T 22-04-2016 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 RMA_RS01070 1452436200c5461ed058685e97d28108 494 Pfam PF02934 GatB/GatE catalytic domain 14 295 6.5E-113 T 22-04-2016 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 RMA_RS01070 1452436200c5461ed058685e97d28108 494 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 10 482 38.187 T 22-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RMA_RS01070 1452436200c5461ed058685e97d28108 494 PANTHER PTHR11659:SF0 10 486 3.2E-261 T 22-04-2016 RMA_RS01070 1452436200c5461ed058685e97d28108 494 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 11 482 3.1E-179 T 22-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RMA_RS01070 1452436200c5461ed058685e97d28108 494 SMART SM00845 335 481 2.5E-81 T 22-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 RMA_RS01070 1452436200c5461ed058685e97d28108 494 SUPERFAMILY SSF55931 12 303 3.14E-116 T 22-04-2016 RMA_RS01070 1452436200c5461ed058685e97d28108 494 Pfam PF02637 GatB domain 335 481 1.7E-56 T 22-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 RMA_RS01070 1452436200c5461ed058685e97d28108 494 Gene3D G3DSA:1.10.10.410 427 482 9.7E-6 T 22-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal RMA_RS01070 1452436200c5461ed058685e97d28108 494 SUPERFAMILY SSF89095 304 409 5.89E-34 T 22-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 RMA_RS01070 1452436200c5461ed058685e97d28108 494 PANTHER PTHR11659 10 486 3.2E-261 T 22-04-2016 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E GO:0016884 RMA_RS00265 2e336eb4ac46f8793fda61a9e14dbcec 197 PANTHER PTHR12151 53 190 3.5E-28 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC RMA_RS00265 2e336eb4ac46f8793fda61a9e14dbcec 197 SUPERFAMILY SSF52833 52 194 1.51E-28 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS00265 2e336eb4ac46f8793fda61a9e14dbcec 197 Gene3D G3DSA:3.40.30.10 24 191 5.1E-36 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS00265 2e336eb4ac46f8793fda61a9e14dbcec 197 Pfam PF02630 SCO1/SenC 15 191 4.9E-58 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 SUPERFAMILY SSF48592 406 522 3.91E-75 T 22-04-2016 RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 SUPERFAMILY SSF48592 7 134 3.91E-75 T 22-04-2016 RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 PANTHER PTHR11353 6 547 6.6E-244 T 22-04-2016 RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 Gene3D G3DSA:1.10.560.10 367 519 2.0E-41 T 22-04-2016 IPR027413 GroEL-like equatorial domain RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 Gene3D G3DSA:1.10.560.10 6 187 1.7E-43 T 22-04-2016 IPR027413 GroEL-like equatorial domain RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 525 5.8E-100 T 22-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 545 41.067 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 Gene3D G3DSA:3.50.7.10 188 366 4.8E-98 T 22-04-2016 IPR027409 GroEL-like apical domain RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 4 526 7.8E-244 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 22-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 SUPERFAMILY SSF52029 187 376 8.55E-82 T 22-04-2016 IPR027409 GroEL-like apical domain RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 SUPERFAMILY SSF54849 138 204 3.2E-22 T 22-04-2016 RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 PRINTS PR00298 60kDa chaperonin signature 398 419 5.3E-73 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 PRINTS PR00298 60kDa chaperonin signature 350 375 5.3E-73 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 PRINTS PR00298 60kDa chaperonin signature 83 110 5.3E-73 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 PRINTS PR00298 60kDa chaperonin signature 268 291 5.3E-73 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RMA_RS05395 48f6599f3d16c70e7078eb811c522e94 547 PRINTS PR00298 60kDa chaperonin signature 27 53 5.3E-73 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RMA_RS01290 8175aa715be451f3026518aefa94853d 497 SUPERFAMILY SSF50156 279 349 3.29E-10 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS01290 8175aa715be451f3026518aefa94853d 497 PANTHER PTHR22939 41 339 6.9E-34 T 22-04-2016 RMA_RS01290 8175aa715be451f3026518aefa94853d 497 SUPERFAMILY SSF50494 41 234 1.67E-32 T 22-04-2016 IPR009003 Peptidase S1, PA clan RMA_RS01290 8175aa715be451f3026518aefa94853d 497 PRINTS PR00834 HtrA/DegQ protease family signature 101 121 2.3E-12 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RMA_RS01290 8175aa715be451f3026518aefa94853d 497 PRINTS PR00834 HtrA/DegQ protease family signature 144 168 2.3E-12 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RMA_RS01290 8175aa715be451f3026518aefa94853d 497 PRINTS PR00834 HtrA/DegQ protease family signature 78 90 2.3E-12 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RMA_RS01290 8175aa715be451f3026518aefa94853d 497 PRINTS PR00834 HtrA/DegQ protease family signature 293 305 2.3E-12 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RMA_RS01290 8175aa715be451f3026518aefa94853d 497 Pfam PF13180 PDZ domain 276 344 1.0E-8 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS01290 8175aa715be451f3026518aefa94853d 497 Gene3D G3DSA:2.40.10.10 34 124 5.9E-19 T 22-04-2016 RMA_RS01290 8175aa715be451f3026518aefa94853d 497 Pfam PF13365 Trypsin-like peptidase domain 68 206 7.5E-18 T 22-04-2016 RMA_RS01290 8175aa715be451f3026518aefa94853d 497 Gene3D G3DSA:2.30.42.10 280 353 1.0E-10 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS01290 8175aa715be451f3026518aefa94853d 497 ProDom PD208586 PROTEASE SHOCK HYDROLASE SERINE HEAT 3.4.21.- FAMILY PROTEASE HTRA/DEGQ/DEGS EC:3.4.21.- 308 497 1.0E-100 T 22-04-2016 RMA_RS01290 8175aa715be451f3026518aefa94853d 497 Gene3D G3DSA:2.40.10.10 125 234 6.3E-12 T 22-04-2016 RMA_RS00385 cf93f06b018fb8ec25f74e4259ab92c4 477 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 3 356 19.509 T 22-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RMA_RS00385 cf93f06b018fb8ec25f74e4259ab92c4 477 Gene3D G3DSA:3.40.50.620 3 179 4.5E-14 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS00385 cf93f06b018fb8ec25f74e4259ab92c4 477 Pfam PF01171 PP-loop family 22 199 4.0E-58 T 22-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal RMA_RS00385 cf93f06b018fb8ec25f74e4259ab92c4 477 PANTHER PTHR11807 335 387 1.5E-46 T 22-04-2016 RMA_RS00385 cf93f06b018fb8ec25f74e4259ab92c4 477 PANTHER PTHR11807 19 237 1.5E-46 T 22-04-2016 RMA_RS00385 cf93f06b018fb8ec25f74e4259ab92c4 477 PANTHER PTHR11807 260 279 1.5E-46 T 22-04-2016 RMA_RS00385 cf93f06b018fb8ec25f74e4259ab92c4 477 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 21 202 1.4E-55 T 22-04-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RMA_RS00385 cf93f06b018fb8ec25f74e4259ab92c4 477 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 209 255 1.1E-12 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS00385 cf93f06b018fb8ec25f74e4259ab92c4 477 PANTHER PTHR11807:SF2 335 387 1.5E-46 T 22-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RMA_RS00385 cf93f06b018fb8ec25f74e4259ab92c4 477 PANTHER PTHR11807:SF2 19 237 1.5E-46 T 22-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RMA_RS00385 cf93f06b018fb8ec25f74e4259ab92c4 477 PANTHER PTHR11807:SF2 260 279 1.5E-46 T 22-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RMA_RS00385 cf93f06b018fb8ec25f74e4259ab92c4 477 SUPERFAMILY SSF52402 4 201 2.56E-45 T 22-04-2016 RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 SUPERFAMILY SSF55874 445 587 1.26E-26 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 PANTHER PTHR24423:SF520 301 584 2.1E-51 T 22-04-2016 RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 PANTHER PTHR24423:SF520 1 12 2.1E-51 T 22-04-2016 RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 SMART SM00304 307 361 1.3E-13 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 SUPERFAMILY SSF47384 345 442 5.69E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 PANTHER PTHR24423 301 584 2.1E-51 T 22-04-2016 RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 PANTHER PTHR24423 1 12 2.1E-51 T 22-04-2016 RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 Gene3D G3DSA:3.30.565.10 427 587 2.0E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 SMART SM00387 481 589 3.1E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 SUPERFAMILY SSF158472 309 358 2.35E-9 T 22-04-2016 RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 PRINTS PR00344 Bacterial sensor protein C-terminal signature 520 534 3.0E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 PRINTS PR00344 Bacterial sensor protein C-terminal signature 549 567 3.0E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 Gene3D G3DSA:1.10.287.130 368 426 9.8E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 SMART SM00388 371 441 3.1E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 Gene3D G3DSA:1.10.3720.10 286 311 2.7E-4 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 Gene3D G3DSA:1.10.3720.10 46 112 2.7E-4 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 588 2.8E-16 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 Pfam PF00672 HAMP domain 288 357 2.9E-14 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RMA_RS05280 5beb7c345725ec6936861db8a430f473 599 Pfam PF00512 His Kinase A (phospho-acceptor) domain 373 439 6.6E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 365 41.61 T 22-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 SUPERFAMILY SSF52540 3 301 6.75E-76 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 PANTHER PTHR23305:SF12 1 365 1.1E-192 T 22-04-2016 RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 365 1.7E-141 T 22-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 SUPERFAMILY SSF81271 281 362 1.44E-34 T 22-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 Gene3D G3DSA:3.40.50.300 201 266 4.0E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 Gene3D G3DSA:3.40.50.300 4 131 4.0E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 PANTHER PTHR23305 1 365 1.1E-192 T 22-04-2016 RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 Pfam PF06071 Protein of unknown function (DUF933) 281 364 1.8E-38 T 22-04-2016 IPR013029 Domain of unknown function DUF933 RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 PIRSF PIRSF006641 1 365 3.1E-159 T 22-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 Pfam PF01926 50S ribosome-binding GTPase 5 121 1.3E-22 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 27 45 6.1E-34 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 6.1E-34 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 71 86 6.1E-34 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 88 106 6.1E-34 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 Gene3D G3DSA:3.10.20.30 267 365 1.4E-45 T 22-04-2016 IPR012675 Beta-grasp domain RMA_RS05160 144f7e3afee55e3a6aa3234bad5f057c 365 Gene3D G3DSA:1.10.150.300 132 200 5.4E-21 T 22-04-2016 IPR023192 TGS-like domain RMA_RS02965 d2bb284000ebb91d3f831801111ded36 306 PANTHER PTHR21581:SF3 1 272 2.7E-64 T 22-04-2016 RMA_RS02965 d2bb284000ebb91d3f831801111ded36 306 SUPERFAMILY SSF56601 1 272 1.53E-70 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS02965 d2bb284000ebb91d3f831801111ded36 306 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 36 254 2.4E-59 T 22-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RMA_RS02965 d2bb284000ebb91d3f831801111ded36 306 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 61 72 5.2E-15 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RMA_RS02965 d2bb284000ebb91d3f831801111ded36 306 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 114 131 5.2E-15 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RMA_RS02965 d2bb284000ebb91d3f831801111ded36 306 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 141 154 5.2E-15 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RMA_RS02965 d2bb284000ebb91d3f831801111ded36 306 PANTHER PTHR21581 1 272 2.7E-64 T 22-04-2016 RMA_RS02965 d2bb284000ebb91d3f831801111ded36 306 Gene3D G3DSA:3.40.710.10 11 272 6.4E-84 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS03740 85a205ad325491f0e1ad8105101d37e4 412 PANTHER PTHR23151 5 412 2.0E-212 T 22-04-2016 RMA_RS03740 85a205ad325491f0e1ad8105101d37e4 412 SUPERFAMILY SSF47005 125 169 2.09E-10 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RMA_RS03740 85a205ad325491f0e1ad8105101d37e4 412 SUPERFAMILY SSF52777 184 411 1.82E-86 T 22-04-2016 RMA_RS03740 85a205ad325491f0e1ad8105101d37e4 412 Gene3D G3DSA:2.40.50.100 1 92 1.2E-33 T 22-04-2016 RMA_RS03740 85a205ad325491f0e1ad8105101d37e4 412 TIGRFAM TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 4 412 3.4E-172 T 22-04-2016 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex GO:0004742|GO:0006090|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 RMA_RS03740 85a205ad325491f0e1ad8105101d37e4 412 Gene3D G3DSA:3.30.559.10 181 411 1.5E-92 T 22-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain RMA_RS03740 85a205ad325491f0e1ad8105101d37e4 412 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RMA_RS03740 85a205ad325491f0e1ad8105101d37e4 412 SUPERFAMILY SSF51230 1 94 8.9E-28 T 22-04-2016 IPR011053 Single hybrid motif RMA_RS03740 85a205ad325491f0e1ad8105101d37e4 412 PANTHER PTHR23151:SF56 5 412 2.0E-212 T 22-04-2016 RMA_RS03740 85a205ad325491f0e1ad8105101d37e4 412 Pfam PF02817 e3 binding domain 131 166 1.2E-12 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RMA_RS03740 85a205ad325491f0e1ad8105101d37e4 412 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 184 411 3.8E-87 T 22-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 RMA_RS03740 85a205ad325491f0e1ad8105101d37e4 412 Pfam PF00364 Biotin-requiring enzyme 5 77 1.3E-18 T 22-04-2016 IPR000089 Biotin/lipoyl attachment RMA_RS03740 85a205ad325491f0e1ad8105101d37e4 412 Gene3D G3DSA:4.10.320.10 128 172 7.9E-16 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 SMART SM00387 45 191 2.8E-21 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 Gene3D G3DSA:3.30.565.10 20 223 1.3E-74 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 Pfam PF00204 DNA gyrase B 242 411 1.1E-39 T 22-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 Gene3D G3DSA:3.30.230.10 241 412 1.8E-39 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 18 656 0.0 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 SUPERFAMILY SSF54211 242 412 5.31E-38 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 585 645 6.4E-26 T 22-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 17 654 41.48 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PRINTS PR01159 DNA gyrase subunit B signature 610 622 7.9E-12 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PRINTS PR01159 DNA gyrase subunit B signature 626 642 7.9E-12 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PRINTS PR01159 DNA gyrase subunit B signature 20 30 7.9E-12 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PRINTS PR01159 DNA gyrase subunit B signature 334 350 7.9E-12 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PRINTS PR01159 DNA gyrase subunit B signature 396 416 7.9E-12 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 46 190 1.9E-19 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PANTHER PTHR10169:SF45 1 637 1.6E-195 T 22-04-2016 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PANTHER PTHR10169 1 637 1.6E-195 T 22-04-2016 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 Gene3D G3DSA:3.40.50.670 425 637 2.8E-79 T 22-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 SUPERFAMILY SSF56719 415 647 7.32E-74 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PRINTS PR00418 DNA topoisomerase II family signature 84 97 1.0E-62 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PRINTS PR00418 DNA topoisomerase II family signature 507 523 1.0E-62 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PRINTS PR00418 DNA topoisomerase II family signature 525 542 1.0E-62 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PRINTS PR00418 DNA topoisomerase II family signature 441 455 1.0E-62 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PRINTS PR00418 DNA topoisomerase II family signature 589 605 1.0E-62 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PRINTS PR00418 DNA topoisomerase II family signature 49 64 1.0E-62 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PRINTS PR00418 DNA topoisomerase II family signature 128 142 1.0E-62 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PRINTS PR00418 DNA topoisomerase II family signature 292 305 1.0E-62 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 PRINTS PR00418 DNA topoisomerase II family signature 545 557 1.0E-62 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 Pfam PF01751 Toprim domain 440 547 7.4E-18 T 22-04-2016 IPR006171 Toprim domain RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 ProSitePatterns PS00177 DNA topoisomerase II signature. 443 451 - T 22-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 SMART SM00433 49 650 1.1E-296 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01685 7deb35f20f618ff142670c9f241cfbad 662 SUPERFAMILY SSF55874 20 223 3.67E-54 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS02515 6f746645df0ec565b4d553a32bfb5804 284 PANTHER PTHR10491 1 280 3.6E-50 T 22-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family RMA_RS02515 6f746645df0ec565b4d553a32bfb5804 284 SUPERFAMILY SSF51735 1 281 6.25E-57 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS02515 6f746645df0ec565b4d553a32bfb5804 284 Gene3D G3DSA:3.40.50.720 1 238 5.2E-29 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS02515 6f746645df0ec565b4d553a32bfb5804 284 PANTHER PTHR10491:SF4 1 280 3.6E-50 T 22-04-2016 RMA_RS02515 6f746645df0ec565b4d553a32bfb5804 284 Pfam PF04321 RmlD substrate binding domain 1 281 2.3E-27 T 22-04-2016 IPR029903 RmlD-like substrate binding domain RMA_RS07330 937fdb3e3eb77a990075dc0e7ca594c1 595 SMART SM00493 250 321 3.8E-14 T 22-04-2016 IPR006171 Toprim domain RMA_RS07330 937fdb3e3eb77a990075dc0e7ca594c1 595 Gene3D G3DSA:3.90.980.10 112 231 2.2E-35 T 22-04-2016 IPR013264 DNA primase, catalytic core, N-terminal RMA_RS07330 937fdb3e3eb77a990075dc0e7ca594c1 595 SMART SM00400 34 88 7.7E-35 T 22-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RMA_RS07330 937fdb3e3eb77a990075dc0e7ca594c1 595 Pfam PF01807 CHC2 zinc finger 5 97 1.6E-35 T 22-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RMA_RS07330 937fdb3e3eb77a990075dc0e7ca594c1 595 Gene3D G3DSA:3.90.580.10 2 97 1.7E-32 T 22-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RMA_RS07330 937fdb3e3eb77a990075dc0e7ca594c1 595 SUPERFAMILY SSF56731 112 410 8.76E-96 T 22-04-2016 RMA_RS07330 937fdb3e3eb77a990075dc0e7ca594c1 595 PANTHER PTHR30313 1 591 2.0E-113 T 22-04-2016 RMA_RS07330 937fdb3e3eb77a990075dc0e7ca594c1 595 Hamap MF_00974 DNA primase [dnaG]. 2 570 26.092 T 22-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RMA_RS07330 937fdb3e3eb77a990075dc0e7ca594c1 595 SUPERFAMILY SSF57783 1 97 1.58E-30 T 22-04-2016 RMA_RS07330 937fdb3e3eb77a990075dc0e7ca594c1 595 Gene3D G3DSA:3.40.1360.10 232 356 1.0E-41 T 22-04-2016 RMA_RS07330 937fdb3e3eb77a990075dc0e7ca594c1 595 Pfam PF13662 Toprim domain 253 318 7.5E-16 T 22-04-2016 IPR006171 Toprim domain RMA_RS07330 937fdb3e3eb77a990075dc0e7ca594c1 595 TIGRFAM TIGR01391 dnaG: DNA primase 3 409 1.5E-141 T 22-04-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 RMA_RS07330 937fdb3e3eb77a990075dc0e7ca594c1 595 Pfam PF08275 DNA primase catalytic core, N-terminal domain 125 242 4.5E-36 T 22-04-2016 IPR013264 DNA primase, catalytic core, N-terminal RMA_RS07330 937fdb3e3eb77a990075dc0e7ca594c1 595 PIRSF PIRSF002811 1 586 9.1E-171 T 22-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RMA_RS01860 bca216188e3a570dfda342c27ccbcd6a 288 SUPERFAMILY SSF54211 1 126 7.97E-40 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS01860 bca216188e3a570dfda342c27ccbcd6a 288 PANTHER PTHR33694 1 287 1.9E-97 T 22-04-2016 RMA_RS01860 bca216188e3a570dfda342c27ccbcd6a 288 PANTHER PTHR33694:SF1 1 287 1.9E-97 T 22-04-2016 RMA_RS01860 bca216188e3a570dfda342c27ccbcd6a 288 Gene3D G3DSA:3.30.1700.10 129 280 3.2E-50 T 22-04-2016 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RMA_RS01860 bca216188e3a570dfda342c27ccbcd6a 288 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1 285 9.5E-92 T 22-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RMA_RS01860 bca216188e3a570dfda342c27ccbcd6a 288 SUPERFAMILY SSF54211 134 276 1.59E-42 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS01860 bca216188e3a570dfda342c27ccbcd6a 288 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 3 274 7.3E-98 T 22-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RMA_RS01860 bca216188e3a570dfda342c27ccbcd6a 288 Hamap MF_00388 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [lpxC]. 1 279 43.978 T 22-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RMA_RS01860 bca216188e3a570dfda342c27ccbcd6a 288 Gene3D G3DSA:3.30.230.20 2 126 4.8E-44 T 22-04-2016 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RMA_RS05440 bad0a83fbdbe4a9fba270f53c04b21ad 179 Gene3D G3DSA:2.30.22.10 121 179 7.1E-20 T 22-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 RMA_RS05440 bad0a83fbdbe4a9fba270f53c04b21ad 179 PRINTS PR00773 GrpE protein signature 156 175 3.5E-22 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RMA_RS05440 bad0a83fbdbe4a9fba270f53c04b21ad 179 PRINTS PR00773 GrpE protein signature 72 87 3.5E-22 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RMA_RS05440 bad0a83fbdbe4a9fba270f53c04b21ad 179 PRINTS PR00773 GrpE protein signature 44 60 3.5E-22 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RMA_RS05440 bad0a83fbdbe4a9fba270f53c04b21ad 179 PRINTS PR00773 GrpE protein signature 129 144 3.5E-22 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RMA_RS05440 bad0a83fbdbe4a9fba270f53c04b21ad 179 SUPERFAMILY SSF58014 22 119 2.22E-24 T 22-04-2016 RMA_RS05440 bad0a83fbdbe4a9fba270f53c04b21ad 179 ProSitePatterns PS01071 grpE protein signature. 132 175 - T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RMA_RS05440 bad0a83fbdbe4a9fba270f53c04b21ad 179 Hamap MF_01151 Protein GrpE [grpE]. 3 177 18.711 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RMA_RS05440 bad0a83fbdbe4a9fba270f53c04b21ad 179 SUPERFAMILY SSF51064 125 178 1.03E-14 T 22-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 RMA_RS05440 bad0a83fbdbe4a9fba270f53c04b21ad 179 Pfam PF01025 GrpE 20 177 1.0E-51 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RMA_RS05440 bad0a83fbdbe4a9fba270f53c04b21ad 179 PANTHER PTHR21237 3 179 2.7E-57 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RMA_RS05440 bad0a83fbdbe4a9fba270f53c04b21ad 179 Gene3D G3DSA:3.90.20.20 19 119 1.5E-29 T 22-04-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil RMA_RS02420 64ead2c30e81464ead98c4a44839956a 339 Pfam PF02618 YceG-like family 45 317 6.0E-74 T 22-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like RMA_RS02420 64ead2c30e81464ead98c4a44839956a 339 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 144 324 5.4E-57 T 22-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like RMA_RS02420 64ead2c30e81464ead98c4a44839956a 339 PANTHER PTHR30518 10 330 1.5E-69 T 22-04-2016 RMA_RS02420 64ead2c30e81464ead98c4a44839956a 339 Gene3D G3DSA:3.30.160.60 291 323 2.3E-14 T 22-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 RMA_RS02420 64ead2c30e81464ead98c4a44839956a 339 PANTHER PTHR30518:SF2 10 330 1.5E-69 T 22-04-2016 RMA_RS04800 5989b5a5294f59f7a22c46785b8820fe 593 PANTHER PTHR30627 1 585 7.7E-171 T 22-04-2016 RMA_RS04800 5989b5a5294f59f7a22c46785b8820fe 593 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 14 590 4.5E-191 T 22-04-2016 IPR017790 Penicillin-binding protein 2 GO:0016020 UniPathway: UPA00219 RMA_RS04800 5989b5a5294f59f7a22c46785b8820fe 593 PANTHER PTHR30627:SF2 1 585 7.7E-171 T 22-04-2016 RMA_RS04800 5989b5a5294f59f7a22c46785b8820fe 593 SUPERFAMILY SSF56519 51 242 6.54E-45 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RMA_RS04800 5989b5a5294f59f7a22c46785b8820fe 593 Gene3D G3DSA:3.40.710.10 244 591 3.3E-101 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS04800 5989b5a5294f59f7a22c46785b8820fe 593 Gene3D G3DSA:3.90.1310.10 125 242 3.3E-30 T 22-04-2016 RMA_RS04800 5989b5a5294f59f7a22c46785b8820fe 593 Pfam PF03717 Penicillin-binding Protein dimerisation domain 59 229 4.2E-39 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RMA_RS04800 5989b5a5294f59f7a22c46785b8820fe 593 SUPERFAMILY SSF56601 244 590 6.16E-89 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS04800 5989b5a5294f59f7a22c46785b8820fe 593 Pfam PF00905 Penicillin binding protein transpeptidase domain 262 585 2.1E-72 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RMA_RS02220 731726704c773125dec630c719aefea1 144 PIRSF PIRSF005384 4 144 3.6E-54 T 22-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RMA_RS02220 731726704c773125dec630c719aefea1 144 PANTHER PTHR30345 1 143 1.7E-50 T 22-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RMA_RS02220 731726704c773125dec630c719aefea1 144 Pfam PF02502 Ribose/Galactose Isomerase 6 143 2.7E-47 T 22-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RMA_RS02220 731726704c773125dec630c719aefea1 144 Gene3D G3DSA:3.40.1400.10 1 143 3.9E-54 T 22-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RMA_RS02220 731726704c773125dec630c719aefea1 144 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 6 144 1.3E-62 T 22-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RMA_RS02220 731726704c773125dec630c719aefea1 144 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 6 143 6.6E-47 T 22-04-2016 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 RMA_RS02220 731726704c773125dec630c719aefea1 144 SUPERFAMILY SSF89623 4 143 5.36E-49 T 22-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 2 445 30.428 T 22-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 Pfam PF10396 GTP-binding protein TrmE N-terminus 3 119 1.2E-35 T 22-04-2016 IPR018948 GTP-binding protein TrmE, N-terminal RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 PANTHER PTHR11649 5 445 2.7E-153 T 22-04-2016 RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 SUPERFAMILY SSF52540 187 356 2.07E-40 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 SUPERFAMILY SSF52540 71 151 2.07E-40 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 SUPERFAMILY SSF116878 120 219 7.59E-46 T 22-04-2016 RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 SUPERFAMILY SSF116878 374 445 7.59E-46 T 22-04-2016 RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 Gene3D G3DSA:3.40.50.300 210 246 4.4E-7 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 10 445 9.9E-94 T 22-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 Pfam PF12631 MnmE helical domain 122 442 2.2E-49 T 22-04-2016 IPR025867 MnmE, helical domain RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 Gene3D G3DSA:3.40.50.300 286 382 2.9E-7 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 Gene3D G3DSA:3.30.1360.120 2 120 1.2E-43 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 Gene3D G3DSA:1.20.120.430 383 445 3.8E-54 T 22-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 Gene3D G3DSA:1.20.120.430 121 181 3.8E-54 T 22-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 Gene3D G3DSA:1.20.120.430 247 270 3.8E-54 T 22-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 Pfam PF01926 50S ribosome-binding GTPase 218 330 3.4E-22 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 PANTHER PTHR11649:SF56 5 445 2.7E-153 T 22-04-2016 RMA_RS06370 c10f51874f12bee07d8f452923b64596 445 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 216 366 8.8E-20 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RMA_RS00725 74f8e04b8f797ed6efdc0ac96a7d4558 339 SUPERFAMILY SSF53271 1 152 8.67E-38 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like RMA_RS00725 74f8e04b8f797ed6efdc0ac96a7d4558 339 PANTHER PTHR10210:SF32 1 255 2.3E-87 T 22-04-2016 RMA_RS00725 74f8e04b8f797ed6efdc0ac96a7d4558 339 PANTHER PTHR10210 1 255 2.3E-87 T 22-04-2016 RMA_RS00725 74f8e04b8f797ed6efdc0ac96a7d4558 339 SMART SM01400 1 116 5.6E-44 T 22-04-2016 RMA_RS00725 74f8e04b8f797ed6efdc0ac96a7d4558 339 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 1 116 1.7E-34 T 22-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RMA_RS00725 74f8e04b8f797ed6efdc0ac96a7d4558 339 SUPERFAMILY SSF53271 103 253 5.65E-32 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like RMA_RS00725 74f8e04b8f797ed6efdc0ac96a7d4558 339 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 256 298 1.3E-21 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS00725 74f8e04b8f797ed6efdc0ac96a7d4558 339 Gene3D G3DSA:3.40.50.2020 1 158 2.7E-53 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like RMA_RS00725 74f8e04b8f797ed6efdc0ac96a7d4558 339 Gene3D G3DSA:3.40.50.2020 159 271 5.3E-33 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like RMA_RS00725 74f8e04b8f797ed6efdc0ac96a7d4558 339 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 1 253 1.8E-81 T 22-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RMA_RS00725 74f8e04b8f797ed6efdc0ac96a7d4558 339 Pfam PF00156 Phosphoribosyl transferase domain 154 242 7.8E-15 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 PANTHER PTHR24423 247 488 5.4E-69 T 22-04-2016 RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 PANTHER PTHR24423 41 78 5.4E-69 T 22-04-2016 RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 PANTHER PTHR24423 1 7 5.4E-69 T 22-04-2016 RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 Pfam PF00512 His Kinase A (phospho-acceptor) domain 269 331 7.4E-19 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 Gene3D G3DSA:1.10.287.130 261 318 9.1E-19 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 SMART SM00388 268 333 4.8E-21 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 PANTHER PTHR24423:SF374 247 488 5.4E-69 T 22-04-2016 RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 PANTHER PTHR24423:SF374 41 78 5.4E-69 T 22-04-2016 RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 PANTHER PTHR24423:SF374 1 7 5.4E-69 T 22-04-2016 RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 380 489 1.9E-23 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 Gene3D G3DSA:3.30.565.10 319 490 8.5E-41 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 SMART SM00387 379 493 2.0E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 SUPERFAMILY SSF55874 322 489 9.04E-40 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 SUPERFAMILY SSF47384 255 334 2.55E-19 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 432 1.3E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 490 1.3E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RMA_RS01695 45bb65f638b74ded2d2fbcc35e8f934c 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 471 1.3E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RMA_RS06440 7699dd26ec59c5421ad4ec3f85aef5f7 229 Gene3D G3DSA:3.40.50.300 126 227 4.6E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06440 7699dd26ec59c5421ad4ec3f85aef5f7 229 PANTHER PTHR23117:SF13 40 227 7.0E-85 T 22-04-2016 RMA_RS06440 7699dd26ec59c5421ad4ec3f85aef5f7 229 Gene3D G3DSA:3.40.50.300 39 84 9.6E-5 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06440 7699dd26ec59c5421ad4ec3f85aef5f7 229 Hamap MF_00328 Guanylate kinase [gmk]. 42 225 36.915 T 22-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RMA_RS06440 7699dd26ec59c5421ad4ec3f85aef5f7 229 Pfam PF00625 Guanylate kinase 46 223 9.9E-51 T 22-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RMA_RS06440 7699dd26ec59c5421ad4ec3f85aef5f7 229 PANTHER PTHR23117 40 227 7.0E-85 T 22-04-2016 RMA_RS06440 7699dd26ec59c5421ad4ec3f85aef5f7 229 ProSitePatterns PS00856 Guanylate kinase-like signature. 78 95 - T 22-04-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RMA_RS06440 7699dd26ec59c5421ad4ec3f85aef5f7 229 SUPERFAMILY SSF52540 42 227 3.15E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06440 7699dd26ec59c5421ad4ec3f85aef5f7 229 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 7 29 7.1E-8 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS06440 7699dd26ec59c5421ad4ec3f85aef5f7 229 SMART SM00072 43 225 1.5E-63 T 22-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RMA_RS06440 7699dd26ec59c5421ad4ec3f85aef5f7 229 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 45 222 8.9E-74 T 22-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RMA_RS06440 7699dd26ec59c5421ad4ec3f85aef5f7 229 Gene3D G3DSA:3.30.63.10 85 125 1.7E-24 T 22-04-2016 RMA_RS05555 626ed89b7f45fa9fe67861815b5d2f6a 109 SMART SM00739 5 32 1.9E-6 T 22-04-2016 IPR005824 KOW RMA_RS05555 626ed89b7f45fa9fe67861815b5d2f6a 109 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 41 104 3.3E-27 T 22-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05555 626ed89b7f45fa9fe67861815b5d2f6a 109 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 104 2.5E-40 T 22-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05555 626ed89b7f45fa9fe67861815b5d2f6a 109 Pfam PF00467 KOW motif 8 39 9.0E-9 T 22-04-2016 IPR005824 KOW RMA_RS05555 626ed89b7f45fa9fe67861815b5d2f6a 109 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 4 98 21.446 T 22-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05555 626ed89b7f45fa9fe67861815b5d2f6a 109 ProSitePatterns PS01108 Ribosomal protein L24 signature. 9 26 - T 22-04-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05555 626ed89b7f45fa9fe67861815b5d2f6a 109 PANTHER PTHR12903 3 104 3.7E-48 T 22-04-2016 RMA_RS05555 626ed89b7f45fa9fe67861815b5d2f6a 109 SUPERFAMILY SSF50104 3 103 1.16E-34 T 22-04-2016 IPR008991 Translation protein SH3-like domain RMA_RS05555 626ed89b7f45fa9fe67861815b5d2f6a 109 Gene3D G3DSA:2.30.30.30 3 92 1.8E-26 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 RMA_RS05450 d0585c2041e95fdf640994fcff97462a 222 SUPERFAMILY SSF52540 13 193 6.36E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05450 d0585c2041e95fdf640994fcff97462a 222 Gene3D G3DSA:3.40.50.300 2 145 5.9E-14 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05450 d0585c2041e95fdf640994fcff97462a 222 PANTHER PTHR30050:SF5 82 215 4.4E-16 T 22-04-2016 RMA_RS05450 d0585c2041e95fdf640994fcff97462a 222 PANTHER PTHR30050 82 215 4.4E-16 T 22-04-2016 RMA_RS05450 d0585c2041e95fdf640994fcff97462a 222 Gene3D G3DSA:1.10.8.60 151 215 2.3E-14 T 22-04-2016 RMA_RS06900 6eb35388b21f8cc3b7dd5e477b44d34e 744 Pfam PF09397 Ftsk gamma domain 682 741 2.0E-24 T 22-04-2016 IPR018541 FtsK gamma domain RMA_RS06900 6eb35388b21f8cc3b7dd5e477b44d34e 744 SMART SM00382 395 600 0.0035 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS06900 6eb35388b21f8cc3b7dd5e477b44d34e 744 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 14 165 1.3E-23 T 22-04-2016 IPR025199 DNA translocase FtsK, 4TM region RMA_RS06900 6eb35388b21f8cc3b7dd5e477b44d34e 744 Gene3D G3DSA:3.40.50.300 532 643 1.6E-88 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06900 6eb35388b21f8cc3b7dd5e477b44d34e 744 Gene3D G3DSA:3.40.50.300 337 500 1.6E-88 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06900 6eb35388b21f8cc3b7dd5e477b44d34e 744 SUPERFAMILY SSF46785 680 742 2.72E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RMA_RS06900 6eb35388b21f8cc3b7dd5e477b44d34e 744 SMART SM00843 678 744 3.6E-32 T 22-04-2016 IPR018541 FtsK gamma domain RMA_RS06900 6eb35388b21f8cc3b7dd5e477b44d34e 744 SUPERFAMILY SSF52540 340 648 1.6E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06900 6eb35388b21f8cc3b7dd5e477b44d34e 744 PANTHER PTHR22683:SF41 246 744 6.6E-225 T 22-04-2016 RMA_RS06900 6eb35388b21f8cc3b7dd5e477b44d34e 744 PANTHER PTHR22683 246 744 6.6E-225 T 22-04-2016 RMA_RS06900 6eb35388b21f8cc3b7dd5e477b44d34e 744 Pfam PF01580 FtsK/SpoIIIE family 360 579 9.9E-67 T 22-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RMA_RS01890 53d23681ad797773ae022020061294ac 271 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 22-04-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 RMA_RS01890 53d23681ad797773ae022020061294ac 271 PANTHER PTHR22748 1 263 1.9E-80 T 22-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RMA_RS01890 53d23681ad797773ae022020061294ac 271 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 259 9.9E-60 T 22-04-2016 RMA_RS01890 53d23681ad797773ae022020061294ac 271 SUPERFAMILY SSF56219 1 261 7.2E-66 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RMA_RS01890 53d23681ad797773ae022020061294ac 271 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 260 1.3E-56 T 22-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RMA_RS01890 53d23681ad797773ae022020061294ac 271 Gene3D G3DSA:3.60.10.10 1 260 1.4E-64 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RMA_RS01890 53d23681ad797773ae022020061294ac 271 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 252 3.4E-24 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RMA_RS01890 53d23681ad797773ae022020061294ac 271 PANTHER PTHR22748:SF7 1 263 1.9E-80 T 22-04-2016 RMA_RS04580 54c02f9a4a9849663e0c4979222798cb 230 PANTHER PTHR11735:SF11 1 130 3.2E-24 T 22-04-2016 RMA_RS04580 54c02f9a4a9849663e0c4979222798cb 230 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 216 1.1E-40 T 22-04-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 RMA_RS04580 54c02f9a4a9849663e0c4979222798cb 230 SUPERFAMILY SSF53067 1 102 2.16E-22 T 22-04-2016 RMA_RS04580 54c02f9a4a9849663e0c4979222798cb 230 Pfam PF00814 Glycoprotease family 36 135 1.3E-15 T 22-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RMA_RS04580 54c02f9a4a9849663e0c4979222798cb 230 Gene3D G3DSA:3.30.420.40 1 135 3.1E-31 T 22-04-2016 RMA_RS04580 54c02f9a4a9849663e0c4979222798cb 230 PANTHER PTHR11735 1 130 3.2E-24 T 22-04-2016 RMA_RS06955 d1d6bc12c089272b37d6be415ef7e936 230 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 41 224 2.2E-79 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS06955 d1d6bc12c089272b37d6be415ef7e936 230 PANTHER PTHR30071 1 220 1.7E-59 T 22-04-2016 RMA_RS06955 d1d6bc12c089272b37d6be415ef7e936 230 Pfam PF01578 Cytochrome C assembly protein 11 179 1.2E-25 T 22-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RMA_RS06955 d1d6bc12c089272b37d6be415ef7e936 230 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 41 58 1.9E-56 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS06955 d1d6bc12c089272b37d6be415ef7e936 230 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 96 116 1.9E-56 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS06955 d1d6bc12c089272b37d6be415ef7e936 230 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 200 224 1.9E-56 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS06955 d1d6bc12c089272b37d6be415ef7e936 230 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 117 137 1.9E-56 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS06955 d1d6bc12c089272b37d6be415ef7e936 230 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 152 178 1.9E-56 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS06955 d1d6bc12c089272b37d6be415ef7e936 230 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 58 78 1.9E-56 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS06245 92584add37da508eae06f837c5b6ebe8 107 Gene3D G3DSA:3.40.30.10 10 103 1.0E-34 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS06245 92584add37da508eae06f837c5b6ebe8 107 PANTHER PTHR10293 8 103 9.3E-53 T 22-04-2016 IPR004480 Monothiol glutaredoxin-related RMA_RS06245 92584add37da508eae06f837c5b6ebe8 107 PIRSF PIRSF005894 1 107 2.5E-47 T 22-04-2016 IPR014434 Monothiol glutaredoxin RMA_RS06245 92584add37da508eae06f837c5b6ebe8 107 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 8 103 2.2E-43 T 22-04-2016 IPR004480 Monothiol glutaredoxin-related RMA_RS06245 92584add37da508eae06f837c5b6ebe8 107 Pfam PF00462 Glutaredoxin 19 83 1.4E-18 T 22-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RMA_RS06245 92584add37da508eae06f837c5b6ebe8 107 SUPERFAMILY SSF52833 7 103 2.24E-34 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS02265 81ae0e1b6f89d196bc1e57f025e29db4 465 PANTHER PTHR11785 2 457 1.2E-124 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RMA_RS02265 81ae0e1b6f89d196bc1e57f025e29db4 465 Pfam PF13520 Amino acid permease 28 427 2.0E-46 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RMA_RS02265 81ae0e1b6f89d196bc1e57f025e29db4 465 PANTHER PTHR11785:SF405 2 457 1.2E-124 T 22-04-2016 RMA_RS02265 81ae0e1b6f89d196bc1e57f025e29db4 465 PIRSF PIRSF006060 4 465 8.8E-83 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 PRINTS PR00834 HtrA/DegQ protease family signature 227 244 1.8E-40 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 PRINTS PR00834 HtrA/DegQ protease family signature 189 213 1.8E-40 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 PRINTS PR00834 HtrA/DegQ protease family signature 127 139 1.8E-40 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 PRINTS PR00834 HtrA/DegQ protease family signature 148 168 1.8E-40 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 PRINTS PR00834 HtrA/DegQ protease family signature 335 347 1.8E-40 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 PRINTS PR00834 HtrA/DegQ protease family signature 249 266 1.8E-40 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 Pfam PF13180 PDZ domain 295 385 2.1E-15 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 Gene3D G3DSA:2.30.42.10 298 391 2.4E-26 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 PANTHER PTHR22939 109 477 1.8E-107 T 22-04-2016 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 PANTHER PTHR22939 1 85 1.8E-107 T 22-04-2016 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 Gene3D G3DSA:2.40.10.10 181 297 6.1E-43 T 22-04-2016 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 Gene3D G3DSA:2.30.42.10 421 505 3.1E-8 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 SMART SM00228 412 498 2.0 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 SMART SM00228 295 377 2.4E-13 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 PANTHER PTHR22939:SF79 109 477 1.8E-107 T 22-04-2016 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 PANTHER PTHR22939:SF79 1 85 1.8E-107 T 22-04-2016 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 Gene3D G3DSA:2.40.10.10 55 180 2.0E-32 T 22-04-2016 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 SUPERFAMILY SSF50156 421 505 1.17E-6 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 Pfam PF13365 Trypsin-like peptidase domain 118 256 4.4E-33 T 22-04-2016 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 55 503 1.1E-133 T 22-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 SUPERFAMILY SSF50156 253 378 5.78E-23 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 SUPERFAMILY SSF50494 107 292 1.04E-62 T 22-04-2016 IPR009003 Peptidase S1, PA clan RMA_RS00930 e203928dee6d1a1d5dd77564ea2b9035 508 SUPERFAMILY SSF50494 54 77 1.04E-62 T 22-04-2016 IPR009003 Peptidase S1, PA clan RMA_RS00880 df2907f2add4b1a6b925f6ef06b680de 227 Pfam PF00035 Double-stranded RNA binding motif 159 223 4.5E-10 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain RMA_RS00880 df2907f2add4b1a6b925f6ef06b680de 227 Gene3D G3DSA:1.10.1520.10 4 150 1.2E-43 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RMA_RS00880 df2907f2add4b1a6b925f6ef06b680de 227 Pfam PF14622 Ribonuclease-III-like 17 144 3.9E-26 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RMA_RS00880 df2907f2add4b1a6b925f6ef06b680de 227 SUPERFAMILY SSF69065 2 149 4.19E-44 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RMA_RS00880 df2907f2add4b1a6b925f6ef06b680de 227 SMART SM00535 19 154 1.2E-49 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RMA_RS00880 df2907f2add4b1a6b925f6ef06b680de 227 PANTHER PTHR11207 4 225 5.8E-56 T 22-04-2016 RMA_RS00880 df2907f2add4b1a6b925f6ef06b680de 227 Hamap MF_00104 Ribonuclease 3 [rnc]. 7 221 26.854 T 22-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 RMA_RS00880 df2907f2add4b1a6b925f6ef06b680de 227 SMART SM00358 159 225 2.1E-20 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain RMA_RS00880 df2907f2add4b1a6b925f6ef06b680de 227 Gene3D G3DSA:3.30.160.20 158 224 3.8E-20 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain RMA_RS00880 df2907f2add4b1a6b925f6ef06b680de 227 ProSitePatterns PS00517 Ribonuclease III family signature. 43 51 - T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RMA_RS00880 df2907f2add4b1a6b925f6ef06b680de 227 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 7 224 1.3E-72 T 22-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 RMA_RS00880 df2907f2add4b1a6b925f6ef06b680de 227 SUPERFAMILY SSF54768 116 224 6.76E-23 T 22-04-2016 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 36 47 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 SUPERFAMILY SSF50677 220 406 1.67E-43 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 216 393 9.8E-58 T 22-04-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 PRINTS PR00985 Leucyl-tRNA synthetase signature 549 559 1.1E-47 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 PRINTS PR00985 Leucyl-tRNA synthetase signature 121 138 1.1E-47 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 PRINTS PR00985 Leucyl-tRNA synthetase signature 147 163 1.1E-47 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 PRINTS PR00985 Leucyl-tRNA synthetase signature 516 538 1.1E-47 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 PRINTS PR00985 Leucyl-tRNA synthetase signature 478 496 1.1E-47 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 PRINTS PR00985 Leucyl-tRNA synthetase signature 209 228 1.1E-47 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 PRINTS PR00985 Leucyl-tRNA synthetase signature 179 192 1.1E-47 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 Gene3D G3DSA:1.10.730.10 631 771 1.4E-37 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 PANTHER PTHR11946 596 835 0.0 T 22-04-2016 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 PANTHER PTHR11946 1 200 0.0 T 22-04-2016 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 PANTHER PTHR11946 235 563 0.0 T 22-04-2016 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 Gene3D G3DSA:3.90.740.10 217 415 3.7E-45 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 Pfam PF08264 Anticodon-binding domain of tRNA 679 797 1.1E-16 T 22-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 SUPERFAMILY SSF47323 645 835 2.24E-30 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 SUPERFAMILY SSF52374 3 220 3.03E-148 T 22-04-2016 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 SUPERFAMILY SSF52374 407 650 3.03E-148 T 22-04-2016 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 2 835 0.0 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 1 835 22.176 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 8 165 1.6E-25 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 601 642 2.1E-7 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 409 564 7.5E-9 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 PANTHER PTHR11946:SF84 596 835 0.0 T 22-04-2016 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 PANTHER PTHR11946:SF84 1 200 0.0 T 22-04-2016 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 PANTHER PTHR11946:SF84 235 563 0.0 T 22-04-2016 RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 Gene3D G3DSA:3.40.50.620 416 565 2.2E-147 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 Gene3D G3DSA:3.40.50.620 2 216 2.2E-147 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS03200 2a1a5710dc8766200a9b6f98cc4d50b3 835 Gene3D G3DSA:3.40.50.620 601 630 2.2E-147 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS06875 f9ef22436f6150f97702bb367da69bf9 492 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 435 7.7E-156 T 22-04-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 RMA_RS06875 f9ef22436f6150f97702bb367da69bf9 492 SUPERFAMILY SSF143968 328 490 7.72E-64 T 22-04-2016 RMA_RS06875 f9ef22436f6150f97702bb367da69bf9 492 PANTHER PTHR30108:SF1 1 490 3.9E-219 T 22-04-2016 RMA_RS06875 f9ef22436f6150f97702bb367da69bf9 492 Gene3D G3DSA:3.40.1670.10 342 458 6.2E-51 T 22-04-2016 RMA_RS06875 f9ef22436f6150f97702bb367da69bf9 492 SUPERFAMILY SSF50475 3 327 3.45E-107 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RMA_RS06875 f9ef22436f6150f97702bb367da69bf9 492 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 8 460 8.1E-152 T 22-04-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 RMA_RS06875 f9ef22436f6150f97702bb367da69bf9 492 Gene3D G3DSA:1.20.5.570 460 492 3.0E-11 T 22-04-2016 RMA_RS06875 f9ef22436f6150f97702bb367da69bf9 492 PANTHER PTHR30108 1 490 3.9E-219 T 22-04-2016 RMA_RS06015 0658deea72057d4ecfbe3e74d2a944c9 314 SUPERFAMILY SSF51445 8 291 2.42E-64 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily RMA_RS06015 0658deea72057d4ecfbe3e74d2a944c9 314 Gene3D G3DSA:3.20.20.300 9 301 2.1E-69 T 22-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RMA_RS06015 0658deea72057d4ecfbe3e74d2a944c9 314 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 17 305 1.5E-54 T 22-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RMA_RS06015 0658deea72057d4ecfbe3e74d2a944c9 314 PANTHER PTHR30480:SF7 5 286 2.1E-80 T 22-04-2016 RMA_RS06015 0658deea72057d4ecfbe3e74d2a944c9 314 PANTHER PTHR30480 5 286 2.1E-80 T 22-04-2016 RMA_RS06305 793ed88ff8228fd6b15f3fe09ba18ffe 105 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 102 1.0E-31 T 22-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS06305 793ed88ff8228fd6b15f3fe09ba18ffe 105 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 102 1.5E-37 T 22-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 RMA_RS06305 793ed88ff8228fd6b15f3fe09ba18ffe 105 SUPERFAMILY SSF141091 1 102 5.62E-36 T 22-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 RMA_RS06305 793ed88ff8228fd6b15f3fe09ba18ffe 105 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 104 26.079 T 22-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS06305 793ed88ff8228fd6b15f3fe09ba18ffe 105 PANTHER PTHR21349 1 102 2.1E-36 T 22-04-2016 RMA_RS06305 793ed88ff8228fd6b15f3fe09ba18ffe 105 ProSitePatterns PS01169 Ribosomal protein L21 signature. 73 95 - T 22-04-2016 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05505 d1368ad524a78c044fb332b045def49b 212 TIGRFAM TIGR01351 adk: adenylate kinase 3 209 8.5E-73 T 22-04-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RMA_RS05505 d1368ad524a78c044fb332b045def49b 212 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RMA_RS05505 d1368ad524a78c044fb332b045def49b 212 Gene3D G3DSA:3.40.50.300 2 208 1.8E-66 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05505 d1368ad524a78c044fb332b045def49b 212 Pfam PF00406 Adenylate kinase 6 187 2.0E-44 T 22-04-2016 RMA_RS05505 d1368ad524a78c044fb332b045def49b 212 Hamap MF_00235 Adenylate kinase [adk]. 1 210 38.032 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RMA_RS05505 d1368ad524a78c044fb332b045def49b 212 PANTHER PTHR23359 1 209 6.1E-71 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RMA_RS05505 d1368ad524a78c044fb332b045def49b 212 PRINTS PR00094 Adenylate kinase signature 4 17 5.6E-29 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RMA_RS05505 d1368ad524a78c044fb332b045def49b 212 PRINTS PR00094 Adenylate kinase signature 32 46 5.6E-29 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RMA_RS05505 d1368ad524a78c044fb332b045def49b 212 PRINTS PR00094 Adenylate kinase signature 81 97 5.6E-29 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RMA_RS05505 d1368ad524a78c044fb332b045def49b 212 PRINTS PR00094 Adenylate kinase signature 174 188 5.6E-29 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RMA_RS05505 d1368ad524a78c044fb332b045def49b 212 PRINTS PR00094 Adenylate kinase signature 157 172 5.6E-29 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RMA_RS05505 d1368ad524a78c044fb332b045def49b 212 Pfam PF05191 Adenylate kinase, active site lid 123 159 8.1E-10 T 22-04-2016 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RMA_RS05505 d1368ad524a78c044fb332b045def49b 212 SUPERFAMILY SSF52540 2 210 5.53E-38 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 Pfam PF13481 AAA domain 63 215 2.8E-12 T 22-04-2016 RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 Pfam PF13541 Subunit ChlI of Mg-chelatase 353 421 4.5E-8 T 22-04-2016 RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 PANTHER PTHR32472:SF10 2 418 1.1E-165 T 22-04-2016 RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 SUPERFAMILY SSF54211 296 421 9.1E-31 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 SUPERFAMILY SSF54211 248 262 9.1E-31 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 Gene3D G3DSA:3.40.50.300 62 269 2.6E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 Gene3D G3DSA:3.30.230.10 277 422 1.1E-25 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 TIGRFAM TIGR00416 sms: DNA repair protein RadA 2 421 4.5E-157 T 22-04-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 PRINTS PR01874 DNA repair protein radA signature 115 132 9.5E-89 T 22-04-2016 RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 PRINTS PR01874 DNA repair protein radA signature 315 338 9.5E-89 T 22-04-2016 RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 PRINTS PR01874 DNA repair protein radA signature 73 101 9.5E-89 T 22-04-2016 RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 PRINTS PR01874 DNA repair protein radA signature 206 234 9.5E-89 T 22-04-2016 RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 PRINTS PR01874 DNA repair protein radA signature 8 32 9.5E-89 T 22-04-2016 RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 PRINTS PR01874 DNA repair protein radA signature 167 191 9.5E-89 T 22-04-2016 RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 PRINTS PR01874 DNA repair protein radA signature 241 267 9.5E-89 T 22-04-2016 RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 SUPERFAMILY SSF52540 61 284 4.64E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 SMART SM00382 81 237 2.6E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS04560 2dcfbbd6ddc18703a125b14e4162d113 444 PANTHER PTHR32472 2 418 1.1E-165 T 22-04-2016 RMA_RS01995 0d6f5133ad8ef1a53150cf206e11458b 314 Pfam PF03462 PCRF domain 2 163 4.6E-46 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RMA_RS01995 0d6f5133ad8ef1a53150cf206e11458b 314 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 189 205 - T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RMA_RS01995 0d6f5133ad8ef1a53150cf206e11458b 314 Pfam PF00472 RF-1 domain 173 282 4.8E-40 T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RMA_RS01995 0d6f5133ad8ef1a53150cf206e11458b 314 Gene3D G3DSA:3.30.160.20 172 249 2.3E-37 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain RMA_RS01995 0d6f5133ad8ef1a53150cf206e11458b 314 SUPERFAMILY SSF75620 2 309 4.84E-119 T 22-04-2016 RMA_RS01995 0d6f5133ad8ef1a53150cf206e11458b 314 Gene3D G3DSA:1.20.58.410 2 58 4.7E-8 T 22-04-2016 RMA_RS01995 0d6f5133ad8ef1a53150cf206e11458b 314 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 308 3.1E-139 T 22-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RMA_RS01995 0d6f5133ad8ef1a53150cf206e11458b 314 PANTHER PTHR11075 2 310 6.1E-144 T 22-04-2016 RMA_RS01995 0d6f5133ad8ef1a53150cf206e11458b 314 PANTHER PTHR11075:SF6 2 310 6.1E-144 T 22-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RMA_RS01995 0d6f5133ad8ef1a53150cf206e11458b 314 SMART SM00937 29 139 6.9E-51 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RMA_RS06235 58df4667d1f746cc2b6d9eebb6f19f1a 420 PIRSF PIRSF000412 1 420 2.1E-167 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RMA_RS06235 58df4667d1f746cc2b6d9eebb6f19f1a 420 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 222 238 - T 22-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RMA_RS06235 58df4667d1f746cc2b6d9eebb6f19f1a 420 PANTHER PTHR11680 3 420 1.9E-253 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RMA_RS06235 58df4667d1f746cc2b6d9eebb6f19f1a 420 SUPERFAMILY SSF53383 3 419 1.81E-179 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RMA_RS06235 58df4667d1f746cc2b6d9eebb6f19f1a 420 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 420 52.662 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RMA_RS06235 58df4667d1f746cc2b6d9eebb6f19f1a 420 Gene3D G3DSA:3.40.640.10 37 283 3.4E-105 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RMA_RS06235 58df4667d1f746cc2b6d9eebb6f19f1a 420 Gene3D G3DSA:3.90.1150.10 284 420 1.8E-53 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RMA_RS06235 58df4667d1f746cc2b6d9eebb6f19f1a 420 Pfam PF00464 Serine hydroxymethyltransferase 8 384 3.5E-172 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RMA_RS00520 1b14e241ea9e8eaff0f82187ef5fc90c 274 SUPERFAMILY SSF51569 2 273 7.05E-101 T 22-04-2016 RMA_RS00520 1b14e241ea9e8eaff0f82187ef5fc90c 274 PANTHER PTHR21057 3 274 8.1E-148 T 22-04-2016 RMA_RS00520 1b14e241ea9e8eaff0f82187ef5fc90c 274 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 12 274 52.455 T 22-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RMA_RS00520 1b14e241ea9e8eaff0f82187ef5fc90c 274 PANTHER PTHR21057:SF2 3 274 8.1E-148 T 22-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RMA_RS00520 1b14e241ea9e8eaff0f82187ef5fc90c 274 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 17 273 1.1E-128 T 22-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RMA_RS00520 1b14e241ea9e8eaff0f82187ef5fc90c 274 Gene3D G3DSA:3.20.20.70 17 273 2.8E-108 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RMA_RS00520 1b14e241ea9e8eaff0f82187ef5fc90c 274 Pfam PF00793 DAHP synthetase I family 8 272 1.1E-83 T 22-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RMA_RS02715 d7da4aff2ab2d8bc52efda3978940473 387 ProDom PD210175 RP364 RP363 75 219 1.0E-65 T 22-04-2016 IPR020168 Uncharacterised protein family RP364 RMA_RS01005 7088d57ff526dc02edd42f31a7c01a81 125 SUPERFAMILY SSF48300 4 61 5.1E-15 T 22-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS01005 7088d57ff526dc02edd42f31a7c01a81 125 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 50 1.3E-17 T 22-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS01005 7088d57ff526dc02edd42f31a7c01a81 125 Gene3D G3DSA:1.20.5.710 7 51 3.5E-17 T 22-04-2016 RMA_RS01005 7088d57ff526dc02edd42f31a7c01a81 125 Gene3D G3DSA:3.30.1390.10 54 125 2.2E-30 T 22-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RMA_RS01005 7088d57ff526dc02edd42f31a7c01a81 125 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 59 125 4.5E-28 T 22-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 RMA_RS01005 7088d57ff526dc02edd42f31a7c01a81 125 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 1 125 22.621 T 22-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS01005 7088d57ff526dc02edd42f31a7c01a81 125 SUPERFAMILY SSF54736 55 125 2.09E-23 T 22-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RMA_RS01005 7088d57ff526dc02edd42f31a7c01a81 125 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 125 1.6E-47 T 22-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS01005 7088d57ff526dc02edd42f31a7c01a81 125 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 60 125 4.0E-19 T 22-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 RMA_RS05980 b8f4304e47b6a2f74e63ffa1fb870359 424 SUPERFAMILY SSF56176 335 419 1.25E-18 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RMA_RS05980 b8f4304e47b6a2f74e63ffa1fb870359 424 SUPERFAMILY SSF54631 195 338 2.53E-33 T 22-04-2016 RMA_RS05980 b8f4304e47b6a2f74e63ffa1fb870359 424 Gene3D G3DSA:3.30.465.10 330 415 1.5E-22 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RMA_RS05980 b8f4304e47b6a2f74e63ffa1fb870359 424 SMART SM01091 337 415 2.2E-22 T 22-04-2016 IPR005170 Transporter-associated domain RMA_RS05980 b8f4304e47b6a2f74e63ffa1fb870359 424 PANTHER PTHR22777 4 414 7.8E-119 T 22-04-2016 RMA_RS05980 b8f4304e47b6a2f74e63ffa1fb870359 424 Pfam PF00571 CBS domain 273 322 1.8E-6 T 22-04-2016 IPR000644 CBS domain RMA_RS05980 b8f4304e47b6a2f74e63ffa1fb870359 424 Pfam PF00571 CBS domain 199 257 1.1E-4 T 22-04-2016 IPR000644 CBS domain RMA_RS05980 b8f4304e47b6a2f74e63ffa1fb870359 424 SMART SM00116 208 257 5.0 T 22-04-2016 IPR000644 CBS domain RMA_RS05980 b8f4304e47b6a2f74e63ffa1fb870359 424 SMART SM00116 274 322 2.5 T 22-04-2016 IPR000644 CBS domain RMA_RS05980 b8f4304e47b6a2f74e63ffa1fb870359 424 Pfam PF03471 Transporter associated domain 339 414 1.5E-18 T 22-04-2016 IPR005170 Transporter-associated domain RMA_RS05980 b8f4304e47b6a2f74e63ffa1fb870359 424 Pfam PF01595 Domain of unknown function DUF21 7 180 1.4E-36 T 22-04-2016 IPR002550 Domain of unknown function DUF21 RMA_RS05980 b8f4304e47b6a2f74e63ffa1fb870359 424 Gene3D G3DSA:3.10.580.10 186 329 3.7E-21 T 22-04-2016 RMA_RS05080 c5a44060c2a5e886cba282368af3c8a0 71 Gene3D G3DSA:3.40.50.360 1 71 5.8E-12 T 22-04-2016 IPR029039 Flavoprotein-like domain RMA_RS05080 c5a44060c2a5e886cba282368af3c8a0 71 SUPERFAMILY SSF52218 1 70 2.41E-5 T 22-04-2016 IPR029039 Flavoprotein-like domain RMA_RS05390 1526c4677b849fad91b43e1901a0c1e3 134 Pfam PF04607 Region found in RelA / SpoT proteins 24 132 1.8E-31 T 22-04-2016 IPR007685 RelA/SpoT GO:0015969 RMA_RS05390 1526c4677b849fad91b43e1901a0c1e3 134 Gene3D G3DSA:3.30.460.10 2 112 1.7E-35 T 22-04-2016 RMA_RS05390 1526c4677b849fad91b43e1901a0c1e3 134 SUPERFAMILY SSF81301 2 133 9.81E-44 T 22-04-2016 RMA_RS05390 1526c4677b849fad91b43e1901a0c1e3 134 SMART SM00954 24 134 5.6E-43 T 22-04-2016 IPR007685 RelA/SpoT GO:0015969 RMA_RS05390 1526c4677b849fad91b43e1901a0c1e3 134 PANTHER PTHR21262 1 131 1.4E-41 T 22-04-2016 RMA_RS06240 5d58119b8a447ca6825b852157171411 216 Gene3D G3DSA:3.40.50.1820 11 210 8.2E-30 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS06240 5d58119b8a447ca6825b852157171411 216 SUPERFAMILY SSF53474 13 209 3.87E-29 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS06240 5d58119b8a447ca6825b852157171411 216 PANTHER PTHR10655 7 211 3.3E-22 T 22-04-2016 RMA_RS06240 5d58119b8a447ca6825b852157171411 216 PANTHER PTHR10655:SF17 7 211 3.3E-22 T 22-04-2016 RMA_RS06240 5d58119b8a447ca6825b852157171411 216 Pfam PF02230 Phospholipase/Carboxylesterase 6 210 5.4E-60 T 22-04-2016 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 RMA_RS00095 723b19336470c8c999f8e0c91b3b4e27 417 SUPERFAMILY SSF81301 73 177 2.4E-32 T 22-04-2016 RMA_RS00095 723b19336470c8c999f8e0c91b3b4e27 417 SUPERFAMILY SSF81301 16 42 2.4E-32 T 22-04-2016 RMA_RS00095 723b19336470c8c999f8e0c91b3b4e27 417 PANTHER PTHR13734 71 295 1.6E-57 T 22-04-2016 RMA_RS00095 723b19336470c8c999f8e0c91b3b4e27 417 PANTHER PTHR13734 15 40 1.6E-57 T 22-04-2016 RMA_RS00095 723b19336470c8c999f8e0c91b3b4e27 417 Gene3D G3DSA:3.30.460.10 9 177 1.7E-45 T 22-04-2016 RMA_RS00095 723b19336470c8c999f8e0c91b3b4e27 417 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 216 266 2.6E-9 T 22-04-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain RMA_RS00095 723b19336470c8c999f8e0c91b3b4e27 417 Pfam PF01743 Poly A polymerase head domain 29 180 7.1E-28 T 22-04-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 RMA_RS00095 723b19336470c8c999f8e0c91b3b4e27 417 Gene3D G3DSA:1.10.3090.10 180 386 1.8E-36 T 22-04-2016 RMA_RS00095 723b19336470c8c999f8e0c91b3b4e27 417 SUPERFAMILY SSF81891 180 416 1.05E-42 T 22-04-2016 RMA_RS00595 8c0ccce06612600d395b0dcddeb094fe 237 PANTHER PTHR26402:SF553 1 223 3.0E-110 T 22-04-2016 RMA_RS00595 8c0ccce06612600d395b0dcddeb094fe 237 PANTHER PTHR26402 1 223 3.0E-110 T 22-04-2016 RMA_RS00595 8c0ccce06612600d395b0dcddeb094fe 237 SMART SM00862 145 221 4.1E-21 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RMA_RS00595 8c0ccce06612600d395b0dcddeb094fe 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 221 3.9E-21 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RMA_RS00595 8c0ccce06612600d395b0dcddeb094fe 237 SUPERFAMILY SSF52172 1 179 1.51E-34 T 22-04-2016 IPR011006 CheY-like superfamily RMA_RS00595 8c0ccce06612600d395b0dcddeb094fe 237 Gene3D G3DSA:3.40.50.2300 1 121 2.0E-32 T 22-04-2016 RMA_RS00595 8c0ccce06612600d395b0dcddeb094fe 237 SMART SM00448 1 112 1.3E-34 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RMA_RS00595 8c0ccce06612600d395b0dcddeb094fe 237 Pfam PF00072 Response regulator receiver domain 3 113 1.6E-22 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RMA_RS00595 8c0ccce06612600d395b0dcddeb094fe 237 Gene3D G3DSA:1.10.10.10 123 223 1.2E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RMA_RS01135 acefbbce1c720e61785ed278c664b07c 156 Gene3D G3DSA:1.10.940.10 8 152 1.1E-31 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RMA_RS01135 acefbbce1c720e61785ed278c664b07c 156 SUPERFAMILY SSF48013 8 152 1.96E-29 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RMA_RS01135 acefbbce1c720e61785ed278c664b07c 156 Pfam PF01029 NusB family 11 150 5.2E-26 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RMA_RS01135 acefbbce1c720e61785ed278c664b07c 156 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 9 151 3.3E-33 T 22-04-2016 IPR011605 NusB antitermination factor GO:0006353 RMA_RS01135 acefbbce1c720e61785ed278c664b07c 156 PANTHER PTHR11078 1 151 9.3E-22 T 22-04-2016 IPR011605 NusB antitermination factor GO:0006353 RMA_RS01135 acefbbce1c720e61785ed278c664b07c 156 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 6 153 18.541 T 22-04-2016 IPR011605 NusB antitermination factor GO:0006353 RMA_RS07170 1bcdacb92ed341cf4c124b6d6ce44258 56 Pfam PF00471 Ribosomal protein L33 9 54 1.6E-13 T 22-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS07170 1bcdacb92ed341cf4c124b6d6ce44258 56 SUPERFAMILY SSF57829 3 54 3.17E-15 T 22-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 RMA_RS07170 1bcdacb92ed341cf4c124b6d6ce44258 56 PANTHER PTHR15238 1 56 1.1E-20 T 22-04-2016 RMA_RS07170 1bcdacb92ed341cf4c124b6d6ce44258 56 ProSitePatterns PS00582 Ribosomal protein L33 signature. 22 41 - T 22-04-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS07170 1bcdacb92ed341cf4c124b6d6ce44258 56 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 2 54 12.26 T 22-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS07170 1bcdacb92ed341cf4c124b6d6ce44258 56 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 56 2.1E-25 T 22-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS07170 1bcdacb92ed341cf4c124b6d6ce44258 56 PANTHER PTHR15238:SF1 1 56 1.1E-20 T 22-04-2016 RMA_RS05520 038853831102239017ebaff4f29eb179 63 PANTHER PTHR15892 7 62 1.3E-18 T 22-04-2016 RMA_RS05520 038853831102239017ebaff4f29eb179 63 Gene3D G3DSA:3.30.1390.20 6 62 2.4E-25 T 22-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RMA_RS05520 038853831102239017ebaff4f29eb179 63 PIRSF PIRSF002211 1 63 4.5E-24 T 22-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RMA_RS05520 038853831102239017ebaff4f29eb179 63 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 8 62 4.5E-25 T 22-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RMA_RS05520 038853831102239017ebaff4f29eb179 63 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 5 62 17.725 T 22-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RMA_RS05520 038853831102239017ebaff4f29eb179 63 SUPERFAMILY SSF55129 6 62 4.97E-17 T 22-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RMA_RS05520 038853831102239017ebaff4f29eb179 63 Pfam PF00327 Ribosomal protein L30p/L7e 8 57 1.1E-15 T 22-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RMA_RS05520 038853831102239017ebaff4f29eb179 63 PANTHER PTHR15892:SF2 7 62 1.3E-18 T 22-04-2016 RMA_RS05050 892f42ac56c2cddf10a61f518481b1d8 200 ProDom PD209215 WITH SIMILARITIES RP592 1 200 3.0E-109 T 22-04-2016 RMA_RS06410 f87321a753c137badb8865914aad319e 81 PANTHER PTHR20863 1 76 1.1E-17 T 22-04-2016 RMA_RS06410 f87321a753c137badb8865914aad319e 81 Hamap MF_01217 Acyl carrier protein [acpP]. 6 80 19.928 T 22-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RMA_RS06410 f87321a753c137badb8865914aad319e 81 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 38 78 9.0E-16 T 22-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RMA_RS06410 f87321a753c137badb8865914aad319e 81 Pfam PF00550 Phosphopantetheine attachment site 9 76 8.0E-13 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain RMA_RS06410 f87321a753c137badb8865914aad319e 81 Gene3D G3DSA:1.10.1200.10 3 80 1.1E-27 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain RMA_RS06410 f87321a753c137badb8865914aad319e 81 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 5 80 4.8E-34 T 22-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RMA_RS06410 f87321a753c137badb8865914aad319e 81 SUPERFAMILY SSF47336 4 80 2.49E-21 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain RMA_RS00990 df7eed6b90b6ede2b69ee2dba0ea63d7 145 SUPERFAMILY SSF46906 69 142 2.35E-23 T 22-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RMA_RS00990 df7eed6b90b6ede2b69ee2dba0ea63d7 145 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 38 75 4.0E-16 T 22-04-2016 RMA_RS00990 df7eed6b90b6ede2b69ee2dba0ea63d7 145 Gene3D G3DSA:3.30.1550.10 4 73 1.3E-30 T 22-04-2016 IPR020784 Ribosomal protein L11, N-terminal RMA_RS00990 df7eed6b90b6ede2b69ee2dba0ea63d7 145 Pfam PF00298 Ribosomal protein L11, RNA binding domain 73 142 3.2E-22 T 22-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RMA_RS00990 df7eed6b90b6ede2b69ee2dba0ea63d7 145 Pfam PF03946 Ribosomal protein L11, N-terminal domain 10 68 5.9E-24 T 22-04-2016 IPR020784 Ribosomal protein L11, N-terminal RMA_RS00990 df7eed6b90b6ede2b69ee2dba0ea63d7 145 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 4 143 3.3E-61 T 22-04-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 RMA_RS00990 df7eed6b90b6ede2b69ee2dba0ea63d7 145 PANTHER PTHR11661 8 144 1.4E-55 T 22-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RMA_RS00990 df7eed6b90b6ede2b69ee2dba0ea63d7 145 SUPERFAMILY SSF54747 4 74 2.22E-25 T 22-04-2016 IPR020784 Ribosomal protein L11, N-terminal RMA_RS00990 df7eed6b90b6ede2b69ee2dba0ea63d7 145 SMART SM00649 10 143 7.1E-73 T 22-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RMA_RS00990 df7eed6b90b6ede2b69ee2dba0ea63d7 145 Gene3D G3DSA:1.10.10.250 74 143 1.2E-26 T 22-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RMA_RS00990 df7eed6b90b6ede2b69ee2dba0ea63d7 145 ProSitePatterns PS00359 Ribosomal protein L11 signature. 129 144 - T 22-04-2016 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 RMA_RS00990 df7eed6b90b6ede2b69ee2dba0ea63d7 145 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 6 144 27.855 T 22-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RMA_RS01155 9c182b8c26a3c619b7edfbc575ede2af 146 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 138 1.1E-25 T 22-04-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain RMA_RS01155 9c182b8c26a3c619b7edfbc575ede2af 146 PANTHER PTHR12901:SF7 1 144 5.1E-44 T 22-04-2016 RMA_RS01155 9c182b8c26a3c619b7edfbc575ede2af 146 SUPERFAMILY SSF55961 1 144 2.96E-28 T 22-04-2016 RMA_RS01155 9c182b8c26a3c619b7edfbc575ede2af 146 PANTHER PTHR12901 1 144 5.1E-44 T 22-04-2016 RMA_RS01155 9c182b8c26a3c619b7edfbc575ede2af 146 Gene3D G3DSA:3.30.530.20 3 145 8.2E-43 T 22-04-2016 IPR023393 START-like domain RMA_RS00700 993a0f2e39d037aecd9041568e21433b 87 PANTHER PTHR38039:SF1 2 86 1.6E-27 T 22-04-2016 RMA_RS00700 993a0f2e39d037aecd9041568e21433b 87 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 6 85 1.2E-29 T 22-04-2016 IPR009614 Toxin YoeB GO:0004519|GO:0006401 RMA_RS00700 993a0f2e39d037aecd9041568e21433b 87 SUPERFAMILY SSF143011 3 84 1.44E-22 T 22-04-2016 RMA_RS00700 993a0f2e39d037aecd9041568e21433b 87 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 6 85 2.3E-28 T 22-04-2016 IPR009614 Toxin YoeB GO:0004519|GO:0006401 RMA_RS00700 993a0f2e39d037aecd9041568e21433b 87 PANTHER PTHR38039 2 86 1.6E-27 T 22-04-2016 RMA_RS04235 6ec6eef3c02632ef89a27d41084f875a 281 SMART SM00474 1 169 1.5E-50 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RMA_RS04235 6ec6eef3c02632ef89a27d41084f875a 281 PANTHER PTHR12124 1 274 7.4E-44 T 22-04-2016 RMA_RS04235 6ec6eef3c02632ef89a27d41084f875a 281 Gene3D G3DSA:3.30.420.10 2 185 5.8E-18 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS04235 6ec6eef3c02632ef89a27d41084f875a 281 Pfam PF01612 3'-5' exonuclease 1 168 3.8E-49 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RMA_RS04235 6ec6eef3c02632ef89a27d41084f875a 281 PANTHER PTHR12124:SF42 1 274 7.4E-44 T 22-04-2016 RMA_RS04235 6ec6eef3c02632ef89a27d41084f875a 281 SMART SM00341 207 280 0.0011 T 22-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RMA_RS04235 6ec6eef3c02632ef89a27d41084f875a 281 SUPERFAMILY SSF47819 193 280 9.16E-12 T 22-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 RMA_RS04235 6ec6eef3c02632ef89a27d41084f875a 281 Gene3D G3DSA:1.10.150.80 215 276 7.7E-4 T 22-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RMA_RS04235 6ec6eef3c02632ef89a27d41084f875a 281 SUPERFAMILY SSF53098 2 203 1.64E-58 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS05360 f2a0fe655563bee25a444e333e61e223 289 Pfam PF13489 Methyltransferase domain 99 250 1.5E-17 T 22-04-2016 RMA_RS05360 f2a0fe655563bee25a444e333e61e223 289 PANTHER PTHR10108 99 276 6.5E-60 T 22-04-2016 RMA_RS05360 f2a0fe655563bee25a444e333e61e223 289 PANTHER PTHR10108 2 53 6.5E-60 T 22-04-2016 RMA_RS05360 f2a0fe655563bee25a444e333e61e223 289 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 50 97 8.9E-26 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS05360 f2a0fe655563bee25a444e333e61e223 289 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 8 277 1.1E-85 T 22-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 RMA_RS05360 f2a0fe655563bee25a444e333e61e223 289 Gene3D G3DSA:3.40.50.150 99 276 1.2E-40 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS05360 f2a0fe655563bee25a444e333e61e223 289 Gene3D G3DSA:3.40.50.150 30 44 1.2E-40 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS05360 f2a0fe655563bee25a444e333e61e223 289 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 6 283 35.582 T 22-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 RMA_RS05360 f2a0fe655563bee25a444e333e61e223 289 SUPERFAMILY SSF53335 13 44 3.35E-39 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS05360 f2a0fe655563bee25a444e333e61e223 289 SUPERFAMILY SSF53335 98 268 3.35E-39 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS05360 f2a0fe655563bee25a444e333e61e223 289 PANTHER PTHR10108:SF902 99 276 6.5E-60 T 22-04-2016 RMA_RS05360 f2a0fe655563bee25a444e333e61e223 289 PANTHER PTHR10108:SF902 2 53 6.5E-60 T 22-04-2016 RMA_RS03095 1ec05d0120f4eb78275a2ac4a1d37a45 376 PANTHER PTHR21015 1 359 2.1E-74 T 22-04-2016 RMA_RS03095 1ec05d0120f4eb78275a2ac4a1d37a45 376 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 362 2.7E-105 T 22-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RMA_RS03095 1ec05d0120f4eb78275a2ac4a1d37a45 376 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 4 376 28.148 T 22-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RMA_RS03095 1ec05d0120f4eb78275a2ac4a1d37a45 376 PANTHER PTHR21015:SF22 1 359 2.1E-74 T 22-04-2016 RMA_RS03095 1ec05d0120f4eb78275a2ac4a1d37a45 376 Gene3D G3DSA:3.40.50.2000 3 45 1.7E-6 T 22-04-2016 RMA_RS03095 1ec05d0120f4eb78275a2ac4a1d37a45 376 Gene3D G3DSA:3.40.50.2000 150 356 1.1E-55 T 22-04-2016 RMA_RS03095 1ec05d0120f4eb78275a2ac4a1d37a45 376 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 201 366 1.2E-44 T 22-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RMA_RS03095 1ec05d0120f4eb78275a2ac4a1d37a45 376 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 4 136 7.6E-34 T 22-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RMA_RS03095 1ec05d0120f4eb78275a2ac4a1d37a45 376 SUPERFAMILY SSF53756 2 361 7.77E-85 T 22-04-2016 RMA_RS03095 1ec05d0120f4eb78275a2ac4a1d37a45 376 TIGRFAM TIGR03777 RPE4: rickettsial palindromic element RPE4 domain 171 197 1.2E-11 T 22-04-2016 IPR022439 Rickettsia palindromic element RPE4 RMA_RS02930 94ed1e5f19b576dea7ea02cc81c38f22 204 Pfam PF01330 RuvA N terminal domain 1 61 7.6E-18 T 22-04-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 RMA_RS02930 94ed1e5f19b576dea7ea02cc81c38f22 204 Gene3D G3DSA:1.10.8.10 141 198 4.9E-18 T 22-04-2016 RMA_RS02930 94ed1e5f19b576dea7ea02cc81c38f22 204 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 197 4.0E-43 T 22-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RMA_RS02930 94ed1e5f19b576dea7ea02cc81c38f22 204 Pfam PF14520 Helix-hairpin-helix domain 71 128 1.7E-12 T 22-04-2016 RMA_RS02930 94ed1e5f19b576dea7ea02cc81c38f22 204 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 200 29.405 T 22-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RMA_RS02930 94ed1e5f19b576dea7ea02cc81c38f22 204 SUPERFAMILY SSF50249 1 62 1.31E-14 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS02930 94ed1e5f19b576dea7ea02cc81c38f22 204 Gene3D G3DSA:1.10.150.20 66 140 3.4E-25 T 22-04-2016 RMA_RS02930 94ed1e5f19b576dea7ea02cc81c38f22 204 Gene3D G3DSA:2.40.50.140 1 64 5.9E-22 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS02930 94ed1e5f19b576dea7ea02cc81c38f22 204 SUPERFAMILY SSF46929 153 198 1.09E-12 T 22-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RMA_RS02930 94ed1e5f19b576dea7ea02cc81c38f22 204 SUPERFAMILY SSF47781 64 133 2.84E-18 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RMA_RS02930 94ed1e5f19b576dea7ea02cc81c38f22 204 Pfam PF07499 RuvA, C-terminal domain 154 197 4.2E-12 T 22-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RMA_RS02930 94ed1e5f19b576dea7ea02cc81c38f22 204 PANTHER PTHR33796 2 202 2.1E-55 T 22-04-2016 RMA_RS05020 20b857f7427372ce181138947d1f7143 518 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 42 503 1.4E-151 T 22-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RMA_RS05020 20b857f7427372ce181138947d1f7143 518 PRINTS PR00702 Acriflavin resistance protein family signature 405 429 5.2E-5 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS05020 20b857f7427372ce181138947d1f7143 518 PRINTS PR00702 Acriflavin resistance protein family signature 480 503 5.2E-5 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS05020 20b857f7427372ce181138947d1f7143 518 PRINTS PR00702 Acriflavin resistance protein family signature 377 398 5.2E-5 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS05020 20b857f7427372ce181138947d1f7143 518 PANTHER PTHR30081:SF1 234 518 3.7E-135 T 22-04-2016 RMA_RS05020 20b857f7427372ce181138947d1f7143 518 PANTHER PTHR30081:SF1 141 199 3.7E-135 T 22-04-2016 RMA_RS05020 20b857f7427372ce181138947d1f7143 518 PANTHER PTHR30081:SF1 24 92 3.7E-135 T 22-04-2016 RMA_RS05020 20b857f7427372ce181138947d1f7143 518 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 516 41.758 T 22-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RMA_RS05020 20b857f7427372ce181138947d1f7143 518 PANTHER PTHR30081 234 518 3.7E-135 T 22-04-2016 RMA_RS05020 20b857f7427372ce181138947d1f7143 518 PANTHER PTHR30081 141 199 3.7E-135 T 22-04-2016 RMA_RS05020 20b857f7427372ce181138947d1f7143 518 PANTHER PTHR30081 24 92 3.7E-135 T 22-04-2016 RMA_RS05020 20b857f7427372ce181138947d1f7143 518 Pfam PF02355 Protein export membrane protein 337 505 1.0E-17 T 22-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RMA_RS05020 20b857f7427372ce181138947d1f7143 518 SUPERFAMILY SSF82866 313 511 1.96E-45 T 22-04-2016 RMA_RS05020 20b857f7427372ce181138947d1f7143 518 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 266 496 5.7E-81 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RMA_RS05020 20b857f7427372ce181138947d1f7143 518 Gene3D G3DSA:1.20.1640.10 313 514 9.9E-29 T 22-04-2016 RMA_RS03980 e69bdeef7b3b2468ff2943b932714574 287 Pfam PF00665 Integrase core domain 127 238 1.2E-32 T 22-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RMA_RS03980 e69bdeef7b3b2468ff2943b932714574 287 Gene3D G3DSA:3.30.420.10 118 277 2.7E-39 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS03980 e69bdeef7b3b2468ff2943b932714574 287 SUPERFAMILY SSF53098 118 280 4.17E-43 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS03980 e69bdeef7b3b2468ff2943b932714574 287 PANTHER PTHR32552 1 281 6.3E-79 T 22-04-2016 RMA_RS03980 e69bdeef7b3b2468ff2943b932714574 287 Pfam PF13276 HTH-like domain 44 99 8.3E-15 T 22-04-2016 IPR025948 HTH-like domain RMA_RS01895 ec49adec020c626c189eab0c3806da17 326 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 12 325 1.6E-147 T 22-04-2016 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RMA_RS01895 ec49adec020c626c189eab0c3806da17 326 PANTHER PTHR11516 11 326 8.8E-148 T 22-04-2016 RMA_RS01895 ec49adec020c626c189eab0c3806da17 326 PANTHER PTHR11516:SF40 11 326 8.8E-148 T 22-04-2016 RMA_RS01895 ec49adec020c626c189eab0c3806da17 326 Gene3D G3DSA:3.40.50.970 9 325 1.0E-122 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RMA_RS01895 ec49adec020c626c189eab0c3806da17 326 Pfam PF00676 Dehydrogenase E1 component 21 315 7.8E-93 T 22-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 RMA_RS01895 ec49adec020c626c189eab0c3806da17 326 SUPERFAMILY SSF52518 7 326 1.11E-100 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RMA_RS00010 05f9b79861eeab62d1dbc90bf13a1e69 105 PRINTS PR00421 Thioredoxin family signature 21 29 2.2E-9 T 22-04-2016 RMA_RS00010 05f9b79861eeab62d1dbc90bf13a1e69 105 PRINTS PR00421 Thioredoxin family signature 69 80 2.2E-9 T 22-04-2016 RMA_RS00010 05f9b79861eeab62d1dbc90bf13a1e69 105 PRINTS PR00421 Thioredoxin family signature 29 38 2.2E-9 T 22-04-2016 RMA_RS00010 05f9b79861eeab62d1dbc90bf13a1e69 105 PIRSF PIRSF000077 1 105 1.1E-44 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RMA_RS00010 05f9b79861eeab62d1dbc90bf13a1e69 105 SUPERFAMILY SSF52833 7 103 2.55E-36 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS00010 05f9b79861eeab62d1dbc90bf13a1e69 105 PANTHER PTHR10438 7 105 2.4E-43 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RMA_RS00010 05f9b79861eeab62d1dbc90bf13a1e69 105 PANTHER PTHR10438:SF256 7 105 2.4E-43 T 22-04-2016 RMA_RS00010 05f9b79861eeab62d1dbc90bf13a1e69 105 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RMA_RS00010 05f9b79861eeab62d1dbc90bf13a1e69 105 Gene3D G3DSA:3.40.30.10 5 103 1.2E-37 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS00010 05f9b79861eeab62d1dbc90bf13a1e69 105 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 104 1.3E-42 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RMA_RS00010 05f9b79861eeab62d1dbc90bf13a1e69 105 Pfam PF00085 Thioredoxin 5 103 2.0E-33 T 22-04-2016 IPR013766 Thioredoxin domain GO:0045454 RMA_RS05515 78271ec8a48f529a18f90919273f9519 153 PANTHER PTHR12934 1 151 2.7E-48 T 22-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 RMA_RS05515 78271ec8a48f529a18f90919273f9519 153 SUPERFAMILY SSF52080 4 152 3.27E-35 T 22-04-2016 IPR021131 Ribosomal protein L18e/L15P RMA_RS05515 78271ec8a48f529a18f90919273f9519 153 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 27 152 2.9E-29 T 22-04-2016 IPR021131 Ribosomal protein L18e/L15P RMA_RS05515 78271ec8a48f529a18f90919273f9519 153 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 152 2.2E-49 T 22-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 RMA_RS05515 78271ec8a48f529a18f90919273f9519 153 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 153 18.168 T 22-04-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 RMA_RS05515 78271ec8a48f529a18f90919273f9519 153 Gene3D G3DSA:3.100.10.10 32 152 5.1E-19 T 22-04-2016 RMA_RS07260 59893df9880bb6d84c7ecbd4d878ddcc 215 SMART SM00014 77 193 5.4E-12 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RMA_RS07260 59893df9880bb6d84c7ecbd4d878ddcc 215 PANTHER PTHR14969 73 205 3.4E-17 T 22-04-2016 RMA_RS07260 59893df9880bb6d84c7ecbd4d878ddcc 215 PANTHER PTHR14969 11 53 3.4E-17 T 22-04-2016 RMA_RS07260 59893df9880bb6d84c7ecbd4d878ddcc 215 Gene3D G3DSA:1.20.144.10 73 190 6.5E-17 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RMA_RS07260 59893df9880bb6d84c7ecbd4d878ddcc 215 Pfam PF01569 PAP2 superfamily 83 195 2.6E-18 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RMA_RS07260 59893df9880bb6d84c7ecbd4d878ddcc 215 SUPERFAMILY SSF48317 9 197 2.49E-23 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RMA_RS02330 1d4665823c8bb43805a2a1d8736e1830 438 PANTHER PTHR23508 1 438 3.7E-45 T 22-04-2016 RMA_RS02330 1d4665823c8bb43805a2a1d8736e1830 438 Gene3D G3DSA:1.20.1250.20 17 220 7.0E-16 T 22-04-2016 RMA_RS02330 1d4665823c8bb43805a2a1d8736e1830 438 Gene3D G3DSA:1.20.1250.20 254 429 7.7E-4 T 22-04-2016 RMA_RS02330 1d4665823c8bb43805a2a1d8736e1830 438 Pfam PF07690 Major Facilitator Superfamily 47 354 6.4E-19 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RMA_RS02330 1d4665823c8bb43805a2a1d8736e1830 438 SUPERFAMILY SSF103473 15 430 6.67E-40 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS01815 956c0098746adc7507a1f8fef8a175c1 407 Pfam PF00563 EAL domain 172 398 3.0E-63 T 22-04-2016 IPR001633 EAL domain RMA_RS01815 956c0098746adc7507a1f8fef8a175c1 407 PANTHER PTHR33121 170 398 4.6E-51 T 22-04-2016 RMA_RS01815 956c0098746adc7507a1f8fef8a175c1 407 SMART SM00052 164 404 3.7E-46 T 22-04-2016 IPR001633 EAL domain RMA_RS01815 956c0098746adc7507a1f8fef8a175c1 407 SUPERFAMILY SSF141868 170 399 7.06E-63 T 22-04-2016 IPR001633 EAL domain RMA_RS01815 956c0098746adc7507a1f8fef8a175c1 407 Gene3D G3DSA:3.20.20.450 171 399 7.0E-62 T 22-04-2016 IPR001633 EAL domain RMA_RS01815 956c0098746adc7507a1f8fef8a175c1 407 PANTHER PTHR33121:SF10 170 398 4.6E-51 T 22-04-2016 RMA_RS06040 7c9be623d74a71fde0637b6a7844de09 325 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 16 322 1.2E-109 T 22-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RMA_RS06040 7c9be623d74a71fde0637b6a7844de09 325 Gene3D G3DSA:3.40.50.300 49 148 4.0E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06040 7c9be623d74a71fde0637b6a7844de09 325 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 5 322 29.373 T 22-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RMA_RS06040 7c9be623d74a71fde0637b6a7844de09 325 PANTHER PTHR30160:SF13 5 317 1.1E-39 T 22-04-2016 RMA_RS06040 7c9be623d74a71fde0637b6a7844de09 325 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 17 320 2.0E-74 T 22-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RMA_RS06040 7c9be623d74a71fde0637b6a7844de09 325 PANTHER PTHR30160 5 317 1.1E-39 T 22-04-2016 RMA_RS06040 7c9be623d74a71fde0637b6a7844de09 325 SUPERFAMILY SSF52540 46 149 8.82E-9 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06670 d8762fc6ae62177c81f8abfd047b1302 510 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 372 3.8E-76 T 22-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06670 d8762fc6ae62177c81f8abfd047b1302 510 Gene3D G3DSA:2.40.30.20 1 92 1.1E-33 T 22-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06670 d8762fc6ae62177c81f8abfd047b1302 510 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 26 91 5.0E-16 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06670 d8762fc6ae62177c81f8abfd047b1302 510 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 379 504 1.7E-49 T 22-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06670 d8762fc6ae62177c81f8abfd047b1302 510 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 363 372 - T 22-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06670 d8762fc6ae62177c81f8abfd047b1302 510 PANTHER PTHR15184 1 493 0.0 T 22-04-2016 RMA_RS06670 d8762fc6ae62177c81f8abfd047b1302 510 Gene3D G3DSA:3.40.50.300 95 379 2.3E-125 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06670 d8762fc6ae62177c81f8abfd047b1302 510 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 509 3.3E-264 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06670 d8762fc6ae62177c81f8abfd047b1302 510 Gene3D G3DSA:1.20.150.20 380 509 2.4E-53 T 22-04-2016 RMA_RS06670 d8762fc6ae62177c81f8abfd047b1302 510 SUPERFAMILY SSF47917 380 508 1.6E-45 T 22-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06670 d8762fc6ae62177c81f8abfd047b1302 510 SUPERFAMILY SSF52540 96 378 7.5E-103 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06670 d8762fc6ae62177c81f8abfd047b1302 510 SUPERFAMILY SSF50615 10 94 9.68E-26 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06670 d8762fc6ae62177c81f8abfd047b1302 510 PIRSF PIRSF039088 1 510 1.3E-275 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06670 d8762fc6ae62177c81f8abfd047b1302 510 PANTHER PTHR15184:SF3 1 493 0.0 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06670 d8762fc6ae62177c81f8abfd047b1302 510 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 509 52.295 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 SUPERFAMILY SSF53244 349 485 5.04E-33 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 SUPERFAMILY SSF51984 7 92 2.62E-10 T 22-04-2016 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 TIGRFAM TIGR03775 RPE3: rickettsial palindromic element RPE3 domain 265 307 8.0E-26 T 22-04-2016 IPR022437 Rickettsia palindromic element RPE3 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 Gene3D G3DSA:3.40.1190.10 281 353 2.5E-58 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 Gene3D G3DSA:3.40.1190.10 101 244 2.5E-58 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 PANTHER PTHR23135:SF2 1 276 1.1E-122 T 22-04-2016 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 PANTHER PTHR23135:SF2 299 484 1.1E-122 T 22-04-2016 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 PANTHER PTHR23135 1 276 1.1E-122 T 22-04-2016 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 PANTHER PTHR23135 299 484 1.1E-122 T 22-04-2016 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 Gene3D G3DSA:3.90.190.20 354 484 1.5E-35 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 107 130 - T 22-04-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 SUPERFAMILY SSF53623 67 235 4.69E-47 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 SUPERFAMILY SSF53623 279 362 4.69E-47 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 Gene3D G3DSA:3.40.50.720 5 90 7.0E-8 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 8 486 8.2E-128 T 22-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 Pfam PF08245 Mur ligase middle domain 109 329 8.2E-31 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS03085 c9203f1796cca3d522a15eaf0c227828 498 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 488 31.278 T 22-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS07225 0ee7dea8663941a486ad28fe63aef5b7 72 SUPERFAMILY SSF116734 7 69 2.62E-9 T 22-04-2016 RMA_RS07095 c8f580c01a1bc338d2094df050b9d55b 313 SUPERFAMILY SSF55120 75 312 2.4E-72 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS07095 c8f580c01a1bc338d2094df050b9d55b 313 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 11 311 2.0E-88 T 22-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS07095 c8f580c01a1bc338d2094df050b9d55b 313 Gene3D G3DSA:3.10.290.10 13 62 2.8E-13 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RMA_RS07095 c8f580c01a1bc338d2094df050b9d55b 313 Pfam PF01479 S4 domain 14 60 1.1E-9 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RMA_RS07095 c8f580c01a1bc338d2094df050b9d55b 313 PANTHER PTHR11079:SF73 1 313 8.5E-115 T 22-04-2016 RMA_RS07095 c8f580c01a1bc338d2094df050b9d55b 313 PANTHER PTHR11079 1 313 8.5E-115 T 22-04-2016 RMA_RS07095 c8f580c01a1bc338d2094df050b9d55b 313 SUPERFAMILY SSF55174 13 67 2.35E-11 T 22-04-2016 RMA_RS07095 c8f580c01a1bc338d2094df050b9d55b 313 Pfam PF00849 RNA pseudouridylate synthase 87 244 6.7E-32 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS07095 c8f580c01a1bc338d2094df050b9d55b 313 SMART SM00363 13 78 5.3E-12 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RMA_RS07095 c8f580c01a1bc338d2094df050b9d55b 313 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 133 147 - T 22-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 16 422 2.8E-119 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 Gene3D G3DSA:1.10.3370.10 11 430 1.2E-149 T 22-04-2016 IPR023201 SecY subunit domain RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 PANTHER PTHR10906:SF2 12 432 2.0E-176 T 22-04-2016 RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 SUPERFAMILY SSF103491 11 417 6.02E-122 T 22-04-2016 IPR023201 SecY subunit domain RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 Pfam PF00344 SecY translocase 70 410 2.0E-109 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 PIRSF PIRSF004557 3 433 6.4E-117 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 426 28.263 T 22-04-2016 IPR026593 Protein translocase subunit SecY RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 ProSitePatterns PS00756 Protein secY signature 2. 168 185 - T 22-04-2016 IPR030659 SecY conserved site RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 17 35 4.7E-95 T 22-04-2016 RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 267 286 4.7E-95 T 22-04-2016 RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 363 381 4.7E-95 T 22-04-2016 RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 395 413 4.7E-95 T 22-04-2016 RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 110 133 4.7E-95 T 22-04-2016 RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 175 198 4.7E-95 T 22-04-2016 RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 308 330 4.7E-95 T 22-04-2016 RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 149 174 4.7E-95 T 22-04-2016 RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 69 89 4.7E-95 T 22-04-2016 RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 PANTHER PTHR10906 12 432 2.0E-176 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RMA_RS05510 f9dd0cfdae063bf56214b47d1fd17f96 433 ProSitePatterns PS00755 Protein secY signature 1. 70 89 - T 22-04-2016 IPR030659 SecY conserved site RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 Pfam PF02559 CarD-like/TRCF domain 457 549 4.5E-23 T 22-04-2016 IPR003711 CarD-like/TRCF domain RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 SUPERFAMILY SSF52540 761 969 8.32E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 Pfam PF00270 DEAD/DEAH box helicase 581 745 2.1E-18 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 Gene3D G3DSA:3.40.50.300 781 942 3.4E-32 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 133 1057 0.0 T 22-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 SUPERFAMILY SSF143517 977 1107 2.48E-32 T 22-04-2016 RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 Pfam PF00271 Helicase conserved C-terminal domain 785 888 6.5E-18 T 22-04-2016 IPR001650 Helicase, C-terminal RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 Gene3D G3DSA:3.40.50.300 566 765 5.5E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 SUPERFAMILY SSF141259 449 523 1.44E-17 T 22-04-2016 IPR003711 CarD-like/TRCF domain RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 SMART SM00490 805 889 4.7E-20 T 22-04-2016 IPR001650 Helicase, C-terminal RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 PANTHER PTHR14025 369 1117 3.1E-278 T 22-04-2016 RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 SUPERFAMILY SSF52540 356 447 7.21E-5 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 20 1081 25.937 T 22-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 Gene3D G3DSA:3.30.2060.10 116 190 6.2E-7 T 22-04-2016 RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 SUPERFAMILY SSF52540 514 762 1.19E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 Pfam PF03461 TRCF domain 986 1075 4.4E-24 T 22-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 SMART SM01058 456 551 8.5E-38 T 22-04-2016 IPR003711 CarD-like/TRCF domain RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 PANTHER PTHR14025:SF21 369 1117 3.1E-278 T 22-04-2016 RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 SMART SM00982 984 1083 3.0E-33 T 22-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 SUPERFAMILY SSF52540 14 331 4.12E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05105 9b1b0a108456a5b53e8b0a65ccca6db0 1122 SMART SM00487 575 769 1.8E-36 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RMA_RS06840 4a54adb065a6ceb8c693e7d17e4eec9d 215 Hamap MF_00528 Septum formation protein Maf [maf]. 9 200 29.112 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 RMA_RS06840 4a54adb065a6ceb8c693e7d17e4eec9d 215 Pfam PF02545 Maf-like protein 10 195 5.2E-46 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 RMA_RS06840 4a54adb065a6ceb8c693e7d17e4eec9d 215 TIGRFAM TIGR00172 maf: septum formation protein Maf 9 193 2.1E-40 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 RMA_RS06840 4a54adb065a6ceb8c693e7d17e4eec9d 215 SUPERFAMILY SSF52972 7 194 1.57E-51 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RMA_RS06840 4a54adb065a6ceb8c693e7d17e4eec9d 215 Gene3D G3DSA:3.90.950.10 8 198 6.2E-55 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RMA_RS06840 4a54adb065a6ceb8c693e7d17e4eec9d 215 PIRSF PIRSF006305 1 202 1.6E-47 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 RMA_RS07255 10255a8518b086643088f34caf0241b7 87 PANTHER PTHR38781:SF1 2 86 3.9E-16 T 22-04-2016 RMA_RS07255 10255a8518b086643088f34caf0241b7 87 PANTHER PTHR38781 2 86 3.9E-16 T 22-04-2016 RMA_RS07255 10255a8518b086643088f34caf0241b7 87 TIGRFAM TIGR02384 RelB_DinJ: addiction module antitoxin, RelB/DinJ family 1 83 4.2E-21 T 22-04-2016 IPR007337 RelB antitoxin/Antitoxin DinJ RMA_RS07255 10255a8518b086643088f34caf0241b7 87 Pfam PF04221 RelB antitoxin 5 72 6.4E-23 T 22-04-2016 IPR007337 RelB antitoxin/Antitoxin DinJ RMA_RS07255 10255a8518b086643088f34caf0241b7 87 PIRSF PIRSF003108 1 87 6.4E-29 T 22-04-2016 IPR026262 Antitoxin DinJ GO:0000986|GO:0015643|GO:0044010 RMA_RS05655 440e27772d9942897eddc56e4b6ae798 142 SUPERFAMILY SSF88723 8 136 7.57E-14 T 22-04-2016 IPR029060 PIN domain-like RMA_RS05655 440e27772d9942897eddc56e4b6ae798 142 Gene3D G3DSA:3.40.50.1010 5 139 3.4E-30 T 22-04-2016 IPR029060 PIN domain-like RMA_RS06585 c58f2839c1540c251b4baf2686d185fb 554 PANTHER PTHR10108:SF730 53 200 3.5E-26 T 22-04-2016 RMA_RS06585 c58f2839c1540c251b4baf2686d185fb 554 PANTHER PTHR10108:SF730 275 350 3.5E-26 T 22-04-2016 RMA_RS06585 c58f2839c1540c251b4baf2686d185fb 554 Pfam PF13847 Methyltransferase domain 72 181 1.1E-18 T 22-04-2016 IPR025714 Methyltransferase domain RMA_RS06585 c58f2839c1540c251b4baf2686d185fb 554 PANTHER PTHR10108 53 200 3.5E-26 T 22-04-2016 RMA_RS06585 c58f2839c1540c251b4baf2686d185fb 554 PANTHER PTHR10108 275 350 3.5E-26 T 22-04-2016 RMA_RS06585 c58f2839c1540c251b4baf2686d185fb 554 Pfam PF10119 Predicted methyltransferase regulatory domain 246 327 2.5E-25 T 22-04-2016 IPR018773 Methyltransferase regulatory domain, predicted RMA_RS06585 c58f2839c1540c251b4baf2686d185fb 554 Gene3D G3DSA:3.40.50.150 38 189 4.6E-31 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS06585 c58f2839c1540c251b4baf2686d185fb 554 SUPERFAMILY SSF53335 68 191 5.37E-30 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS03190 a6e6b9af81fccb4bdc8fe210628236ac 28 Pfam PF07866 Protein of unknown function (DUF1653) 4 27 1.1E-8 T 22-04-2016 IPR023387 DUF1653-like domain RMA_RS03190 a6e6b9af81fccb4bdc8fe210628236ac 28 Gene3D G3DSA:2.30.30.320 2 27 4.2E-9 T 22-04-2016 IPR023387 DUF1653-like domain RMA_RS00965 545cd743e11c129afa5d8f62501c6c54 160 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 32.801 T 22-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RMA_RS00965 545cd743e11c129afa5d8f62501c6c54 160 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 4.4E-61 T 22-04-2016 IPR023798 Ribosomal protein S7 domain RMA_RS00965 545cd743e11c129afa5d8f62501c6c54 160 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 22-04-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 RMA_RS00965 545cd743e11c129afa5d8f62501c6c54 160 SUPERFAMILY SSF47973 4 149 4.06E-57 T 22-04-2016 IPR023798 Ribosomal protein S7 domain RMA_RS00965 545cd743e11c129afa5d8f62501c6c54 160 PANTHER PTHR11205 1 156 3.1E-69 T 22-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 RMA_RS00965 545cd743e11c129afa5d8f62501c6c54 160 PIRSF PIRSF002122 2 157 5.7E-52 T 22-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 RMA_RS00965 545cd743e11c129afa5d8f62501c6c54 160 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 155 5.3E-67 T 22-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RMA_RS00965 545cd743e11c129afa5d8f62501c6c54 160 Gene3D G3DSA:1.10.455.10 7 154 2.5E-57 T 22-04-2016 IPR023798 Ribosomal protein S7 domain RMA_RS05090 86e969f275c17ae52b9343c0b882b498 361 ProSitePatterns PS01347 MraY family signature 1. 69 81 - T 22-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RMA_RS05090 86e969f275c17ae52b9343c0b882b498 361 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 359 25.642 T 22-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RMA_RS05090 86e969f275c17ae52b9343c0b882b498 361 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 361 2.7E-126 T 22-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RMA_RS05090 86e969f275c17ae52b9343c0b882b498 361 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 22-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RMA_RS05090 86e969f275c17ae52b9343c0b882b498 361 PANTHER PTHR22926:SF5 2 361 4.9E-158 T 22-04-2016 RMA_RS05090 86e969f275c17ae52b9343c0b882b498 361 PANTHER PTHR22926 2 361 4.9E-158 T 22-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RMA_RS05090 86e969f275c17ae52b9343c0b882b498 361 Pfam PF00953 Glycosyl transferase family 4 100 284 5.7E-36 T 22-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 34 50 6.1E-21 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 106 118 6.1E-21 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 186 205 6.1E-21 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 SUPERFAMILY SSF51306 32 259 1.26E-51 T 22-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 ProSitePatterns PS00760 Signal peptidases I lysine active site. 108 120 - T 22-04-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 PANTHER PTHR12383 85 152 1.2E-57 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 PANTHER PTHR12383 20 66 1.2E-57 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 PANTHER PTHR12383 168 264 1.2E-57 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 PANTHER PTHR12383:SF27 85 152 1.2E-57 T 22-04-2016 RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 PANTHER PTHR12383:SF27 20 66 1.2E-57 T 22-04-2016 RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 PANTHER PTHR12383:SF27 168 264 1.2E-57 T 22-04-2016 RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 20 227 1.4E-46 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 Gene3D G3DSA:2.10.109.10 186 232 9.8E-41 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 Gene3D G3DSA:2.10.109.10 30 116 9.8E-41 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 ProSitePatterns PS00761 Signal peptidases I signature 3. 191 204 - T 22-04-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 RMA_RS00875 7011bc282758d9e41fa1db199f1ef9af 266 Pfam PF00717 Peptidase S24-like 40 130 6.0E-21 T 22-04-2016 IPR019759 Peptidase S24/S26A/S26B RMA_RS00620 51d244cfea58017fa24041f11c49b13a 294 PANTHER PTHR22911 9 292 3.6E-124 T 22-04-2016 RMA_RS00620 51d244cfea58017fa24041f11c49b13a 294 SUPERFAMILY SSF103481 44 143 1.07E-14 T 22-04-2016 RMA_RS00620 51d244cfea58017fa24041f11c49b13a 294 SUPERFAMILY SSF103481 187 283 1.83E-10 T 22-04-2016 RMA_RS00620 51d244cfea58017fa24041f11c49b13a 294 PANTHER PTHR22911:SF70 9 292 3.6E-124 T 22-04-2016 RMA_RS00620 51d244cfea58017fa24041f11c49b13a 294 Pfam PF00892 EamA-like transporter family 152 280 3.1E-12 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RMA_RS00620 51d244cfea58017fa24041f11c49b13a 294 Pfam PF00892 EamA-like transporter family 10 141 1.8E-21 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RMA_RS02490 dd77163b73f91b115eaeef1e6591b257 311 Pfam PF16200 C-terminal region of band_7 242 302 3.6E-26 T 22-04-2016 IPR032435 Band 7, C-terminal extension RMA_RS02490 dd77163b73f91b115eaeef1e6591b257 311 PANTHER PTHR10264:SF82 1 303 1.8E-216 T 22-04-2016 RMA_RS02490 dd77163b73f91b115eaeef1e6591b257 311 SMART SM00244 18 176 9.3E-62 T 22-04-2016 IPR001107 Band 7 domain RMA_RS02490 dd77163b73f91b115eaeef1e6591b257 311 Pfam PF01145 SPFH domain / Band 7 family 22 194 5.7E-27 T 22-04-2016 IPR001107 Band 7 domain RMA_RS02490 dd77163b73f91b115eaeef1e6591b257 311 PRINTS PR00721 Stomatin signature 73 94 1.6E-26 T 22-04-2016 IPR001972 Stomatin family GO:0016020 RMA_RS02490 dd77163b73f91b115eaeef1e6591b257 311 PRINTS PR00721 Stomatin signature 128 151 1.6E-26 T 22-04-2016 IPR001972 Stomatin family GO:0016020 RMA_RS02490 dd77163b73f91b115eaeef1e6591b257 311 PRINTS PR00721 Stomatin signature 25 47 1.6E-26 T 22-04-2016 IPR001972 Stomatin family GO:0016020 RMA_RS02490 dd77163b73f91b115eaeef1e6591b257 311 PRINTS PR00721 Stomatin signature 171 192 1.6E-26 T 22-04-2016 IPR001972 Stomatin family GO:0016020 RMA_RS02490 dd77163b73f91b115eaeef1e6591b257 311 PRINTS PR00721 Stomatin signature 108 125 1.6E-26 T 22-04-2016 IPR001972 Stomatin family GO:0016020 RMA_RS02490 dd77163b73f91b115eaeef1e6591b257 311 PRINTS PR00721 Stomatin signature 152 170 1.6E-26 T 22-04-2016 IPR001972 Stomatin family GO:0016020 RMA_RS02490 dd77163b73f91b115eaeef1e6591b257 311 PANTHER PTHR10264 1 303 1.8E-216 T 22-04-2016 IPR001972 Stomatin family GO:0016020 RMA_RS02490 dd77163b73f91b115eaeef1e6591b257 311 SUPERFAMILY SSF117892 49 183 1.44E-37 T 22-04-2016 IPR001107 Band 7 domain RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 Pfam PF14520 Helix-hairpin-helix domain 572 619 4.5E-8 T 22-04-2016 RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 Hamap MF_00203 UvrABC system protein C [uvrC]. 8 622 27.585 T 22-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 383 557 1.7E-40 T 22-04-2016 IPR001162 UvrC family homology region RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 PANTHER PTHR30562:SF1 4 623 5.5E-201 T 22-04-2016 RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 Gene3D G3DSA:4.10.860.10 186 244 4.0E-15 T 22-04-2016 IPR001943 UVR domain GO:0005515 RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 SUPERFAMILY SSF46600 193 244 5.75E-12 T 22-04-2016 IPR001943 UVR domain GO:0005515 RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 Gene3D G3DSA:1.10.150.20 571 624 4.5E-21 T 22-04-2016 RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 SUPERFAMILY SSF47781 526 625 1.43E-21 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 SUPERFAMILY SSF82771 21 103 2.09E-20 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 12 604 2.0E-152 T 22-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 Pfam PF01541 GIY-YIG catalytic domain 22 96 1.4E-11 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 Gene3D G3DSA:3.40.1440.10 22 100 5.8E-9 T 22-04-2016 IPR027299 GIY-YIG domain RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 SMART SM00278 603 622 4.9 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 SMART SM00278 571 590 110.0 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 SMART SM00465 21 101 6.2E-24 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 PANTHER PTHR30562 4 623 5.5E-201 T 22-04-2016 RMA_RS04860 f26094f7d163e1fca1236414135fab35 627 Pfam PF02151 UvrB/uvrC motif 207 240 2.2E-9 T 22-04-2016 IPR001943 UVR domain GO:0005515 RMA_RS07030 abce1a5b41cd50c5156d49060219f598 68 PANTHER PTHR38107 1 64 8.9E-19 T 22-04-2016 RMA_RS07030 abce1a5b41cd50c5156d49060219f598 68 PANTHER PTHR38107:SF2 1 64 8.9E-19 T 22-04-2016 RMA_RS07030 abce1a5b41cd50c5156d49060219f598 68 Pfam PF00959 Phage lysozyme 3 64 6.2E-11 T 22-04-2016 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 RMA_RS07030 abce1a5b41cd50c5156d49060219f598 68 SUPERFAMILY SSF53955 1 64 2.3E-19 T 22-04-2016 IPR023346 Lysozyme-like domain RMA_RS07030 abce1a5b41cd50c5156d49060219f598 68 Gene3D G3DSA:1.10.530.40 1 64 2.9E-20 T 22-04-2016 IPR023347 Lysozyme domain GO:0003796 RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 9 20 - T 22-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 5 229 38.899 T 22-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 7 230 2.0E-102 T 22-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 PRINTS PR00395 Ribosomal protein S2 signature 90 107 5.43E-40 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 PRINTS PR00395 Ribosomal protein S2 signature 162 179 5.43E-40 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 PRINTS PR00395 Ribosomal protein S2 signature 200 214 5.43E-40 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 PRINTS PR00395 Ribosomal protein S2 signature 9 27 5.43E-40 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 PRINTS PR00395 Ribosomal protein S2 signature 179 190 5.43E-40 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 PRINTS PR00395 Ribosomal protein S2 signature 40 49 5.43E-40 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 PANTHER PTHR12534 7 273 2.9E-109 T 22-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 SUPERFAMILY SSF52313 9 236 4.19E-90 T 22-04-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 Pfam PF00318 Ribosomal protein S2 12 228 3.6E-90 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 162 186 - T 22-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 Gene3D G3DSA:1.10.287.610 103 156 6.3E-17 T 22-04-2016 RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 Gene3D G3DSA:3.40.50.10490 162 249 5.8E-65 T 22-04-2016 RMA_RS00665 6eb8a4f3fe62964ed1f13bf7f08d7880 295 Gene3D G3DSA:3.40.50.10490 26 102 5.8E-65 T 22-04-2016 RMA_RS02785 63b274ea691309525302a2be2d39399f 767 Pfam PF00390 Malic enzyme, N-terminal domain 23 154 3.7E-25 T 22-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RMA_RS02785 63b274ea691309525302a2be2d39399f 767 SUPERFAMILY SSF53659 433 763 1.69E-62 T 22-04-2016 RMA_RS02785 63b274ea691309525302a2be2d39399f 767 PANTHER PTHR23406:SF23 1 457 1.7E-165 T 22-04-2016 RMA_RS02785 63b274ea691309525302a2be2d39399f 767 SUPERFAMILY SSF53223 13 164 1.65E-50 T 22-04-2016 RMA_RS02785 63b274ea691309525302a2be2d39399f 767 ProSitePatterns PS00331 Malic enzymes signature. 162 178 - T 22-04-2016 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 RMA_RS02785 63b274ea691309525302a2be2d39399f 767 Pfam PF01515 Phosphate acetyl/butaryl transferase 443 759 1.7E-71 T 22-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RMA_RS02785 63b274ea691309525302a2be2d39399f 767 PANTHER PTHR23406 1 457 1.7E-165 T 22-04-2016 RMA_RS02785 63b274ea691309525302a2be2d39399f 767 Gene3D G3DSA:3.40.50.720 164 447 1.1E-82 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS02785 63b274ea691309525302a2be2d39399f 767 SMART SM01274 21 154 2.2E-78 T 22-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RMA_RS02785 63b274ea691309525302a2be2d39399f 767 PIRSF PIRSF036684 1 767 0.0 T 22-04-2016 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase GO:0004473|GO:0005829|GO:0006108|GO:0016616|GO:0030145|GO:0046872|GO:0055114 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 RMA_RS02785 63b274ea691309525302a2be2d39399f 767 Gene3D G3DSA:3.40.50.10380 11 163 2.0E-49 T 22-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RMA_RS02785 63b274ea691309525302a2be2d39399f 767 SMART SM00919 166 403 3.8E-132 T 22-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RMA_RS02785 63b274ea691309525302a2be2d39399f 767 SUPERFAMILY SSF51735 166 441 2.73E-81 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS02785 63b274ea691309525302a2be2d39399f 767 Pfam PF03949 Malic enzyme, NAD binding domain 168 359 9.5E-22 T 22-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RMA_RS02785 63b274ea691309525302a2be2d39399f 767 Gene3D G3DSA:3.40.50.10750 579 735 1.1E-41 T 22-04-2016 RMA_RS00490 ad153289ac0158671cc3a17df3a6cd46 622 SUPERFAMILY SSF51905 94 257 2.74E-43 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS00490 ad153289ac0158671cc3a17df3a6cd46 622 SUPERFAMILY SSF51905 3 63 2.74E-43 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS00490 ad153289ac0158671cc3a17df3a6cd46 622 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 2 617 40.391 T 22-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 RMA_RS00490 ad153289ac0158671cc3a17df3a6cd46 622 Pfam PF13932 GidA associated domain 397 608 1.3E-61 T 22-04-2016 IPR026904 GidA associated domain 3 RMA_RS00490 ad153289ac0158671cc3a17df3a6cd46 622 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 364 387 - T 22-04-2016 IPR020595 MnmG-related, conserved site RMA_RS00490 ad153289ac0158671cc3a17df3a6cd46 622 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 269 283 - T 22-04-2016 IPR020595 MnmG-related, conserved site RMA_RS00490 ad153289ac0158671cc3a17df3a6cd46 622 Gene3D G3DSA:3.50.50.60 3 169 5.9E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS00490 ad153289ac0158671cc3a17df3a6cd46 622 PANTHER PTHR11806 3 615 0.0 T 22-04-2016 RMA_RS00490 ad153289ac0158671cc3a17df3a6cd46 622 PANTHER PTHR11806:SF0 3 615 0.0 T 22-04-2016 RMA_RS00490 ad153289ac0158671cc3a17df3a6cd46 622 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 5.6E-6 T 22-04-2016 RMA_RS00490 ad153289ac0158671cc3a17df3a6cd46 622 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 148 157 5.6E-6 T 22-04-2016 RMA_RS00490 ad153289ac0158671cc3a17df3a6cd46 622 Pfam PF01134 Glucose inhibited division protein A 5 394 1.7E-170 T 22-04-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 RMA_RS00490 ad153289ac0158671cc3a17df3a6cd46 622 SMART SM01228 539 610 6.8E-33 T 22-04-2016 RMA_RS00490 ad153289ac0158671cc3a17df3a6cd46 622 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4 615 5.7E-254 T 22-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 RMA_RS03315 2374fa68d931bfd9dabc34bcba1f1c3e 201 PANTHER PTHR30446:SF0 3 201 1.0E-73 T 22-04-2016 RMA_RS03315 2374fa68d931bfd9dabc34bcba1f1c3e 201 Hamap MF_00017 Recombination protein RecR [recR]. 1 200 77.504 T 22-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RMA_RS03315 2374fa68d931bfd9dabc34bcba1f1c3e 201 TIGRFAM TIGR00615 recR: recombination protein RecR 7 197 1.8E-56 T 22-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RMA_RS03315 2374fa68d931bfd9dabc34bcba1f1c3e 201 Pfam PF02132 RecR protein 43 80 9.4E-11 T 22-04-2016 IPR023628 Recombination protein RecR, C4-type zinc finger RMA_RS03315 2374fa68d931bfd9dabc34bcba1f1c3e 201 Pfam PF13662 Toprim domain 82 173 5.0E-21 T 22-04-2016 IPR006171 Toprim domain RMA_RS03315 2374fa68d931bfd9dabc34bcba1f1c3e 201 ProSitePatterns PS01300 RecR protein signature. 59 80 - T 22-04-2016 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 RMA_RS03315 2374fa68d931bfd9dabc34bcba1f1c3e 201 SUPERFAMILY SSF111304 7 200 4.71E-65 T 22-04-2016 IPR023627 Recombination protein RecR RMA_RS03315 2374fa68d931bfd9dabc34bcba1f1c3e 201 PANTHER PTHR30446 3 201 1.0E-73 T 22-04-2016 RMA_RS03315 2374fa68d931bfd9dabc34bcba1f1c3e 201 SMART SM00493 82 167 2.0E-8 T 22-04-2016 IPR006171 Toprim domain RMA_RS04215 926a27fa4c0c5a4dbfe162e6b7ef7deb 232 Gene3D G3DSA:3.40.50.150 5 218 2.3E-23 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS04215 926a27fa4c0c5a4dbfe162e6b7ef7deb 232 Pfam PF08241 Methyltransferase domain 16 98 1.1E-9 T 22-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RMA_RS04215 926a27fa4c0c5a4dbfe162e6b7ef7deb 232 PANTHER PTHR13090:SF1 2 180 2.0E-29 T 22-04-2016 RMA_RS04215 926a27fa4c0c5a4dbfe162e6b7ef7deb 232 PANTHER PTHR13090 2 180 2.0E-29 T 22-04-2016 RMA_RS04215 926a27fa4c0c5a4dbfe162e6b7ef7deb 232 SUPERFAMILY SSF53335 7 178 1.17E-18 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS07370 fbe809f99f7075650a1a9d3ce94930ee 95 SUPERFAMILY SSF48439 30 94 1.05E-11 T 22-04-2016 RMA_RS07370 fbe809f99f7075650a1a9d3ce94930ee 95 Gene3D G3DSA:1.25.40.120 36 94 2.0E-10 T 22-04-2016 RMA_RS00795 8b13e0c74a8b77e2a80badf0ccf07f3c 307 PIRSF PIRSF000728 19 307 3.8E-64 T 22-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RMA_RS00795 8b13e0c74a8b77e2a80badf0ccf07f3c 307 SUPERFAMILY SSF53633 24 302 1.65E-29 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RMA_RS00795 8b13e0c74a8b77e2a80badf0ccf07f3c 307 Pfam PF00696 Amino acid kinase family 47 245 3.3E-6 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RMA_RS00795 8b13e0c74a8b77e2a80badf0ccf07f3c 307 Gene3D G3DSA:3.40.1160.10 44 302 5.6E-27 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RMA_RS00795 8b13e0c74a8b77e2a80badf0ccf07f3c 307 PANTHER PTHR23342 47 233 2.0E-15 T 22-04-2016 RMA_RS01100 e2a8752624fced4e354a670a9bf28715 519 Gene3D G3DSA:1.20.1250.20 483 500 4.3E-16 T 22-04-2016 RMA_RS01100 e2a8752624fced4e354a670a9bf28715 519 Gene3D G3DSA:1.20.1250.20 273 431 4.3E-16 T 22-04-2016 RMA_RS01100 e2a8752624fced4e354a670a9bf28715 519 PANTHER PTHR23501 12 502 1.0E-164 T 22-04-2016 RMA_RS01100 e2a8752624fced4e354a670a9bf28715 519 SUPERFAMILY SSF103473 6 200 2.09E-54 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS01100 e2a8752624fced4e354a670a9bf28715 519 SUPERFAMILY SSF103473 255 427 2.09E-54 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS01100 e2a8752624fced4e354a670a9bf28715 519 PRINTS PR01036 Tetracycline resistance protein TetB signature 408 427 3.1E-5 T 22-04-2016 RMA_RS01100 e2a8752624fced4e354a670a9bf28715 519 PRINTS PR01036 Tetracycline resistance protein TetB signature 21 45 3.1E-5 T 22-04-2016 RMA_RS01100 e2a8752624fced4e354a670a9bf28715 519 PRINTS PR01036 Tetracycline resistance protein TetB signature 142 166 3.1E-5 T 22-04-2016 RMA_RS01100 e2a8752624fced4e354a670a9bf28715 519 PRINTS PR01036 Tetracycline resistance protein TetB signature 167 191 3.1E-5 T 22-04-2016 RMA_RS01100 e2a8752624fced4e354a670a9bf28715 519 Gene3D G3DSA:1.20.1250.20 15 191 1.1E-18 T 22-04-2016 RMA_RS01100 e2a8752624fced4e354a670a9bf28715 519 Pfam PF07690 Major Facilitator Superfamily 24 417 3.0E-39 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RMA_RS01100 e2a8752624fced4e354a670a9bf28715 519 PANTHER PTHR23501:SF51 12 502 1.0E-164 T 22-04-2016 RMA_RS01100 e2a8752624fced4e354a670a9bf28715 519 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 16 507 4.8E-184 T 22-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 Gene3D G3DSA:3.90.740.10 193 336 9.3E-40 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 Gene3D G3DSA:3.40.50.620 343 567 1.9E-109 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 Gene3D G3DSA:3.40.50.620 3 188 1.9E-109 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 SUPERFAMILY SSF52374 2 190 4.38E-113 T 22-04-2016 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 SUPERFAMILY SSF52374 340 582 4.38E-113 T 22-04-2016 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 Pfam PF08264 Anticodon-binding domain of tRNA 624 771 1.8E-31 T 22-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 Gene3D G3DSA:1.10.730.10 575 763 7.3E-39 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 46 57 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 PRINTS PR00986 Valyl-tRNA synthetase signature 229 246 1.6E-15 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 PRINTS PR00986 Valyl-tRNA synthetase signature 488 506 1.6E-15 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 PRINTS PR00986 Valyl-tRNA synthetase signature 39 50 1.6E-15 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 PRINTS PR00986 Valyl-tRNA synthetase signature 452 473 1.6E-15 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 PRINTS PR00986 Valyl-tRNA synthetase signature 345 358 1.6E-15 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 PANTHER PTHR11946 1 796 9.9E-221 T 22-04-2016 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 SUPERFAMILY SSF47323 587 805 1.87E-42 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 PANTHER PTHR11946:SF5 1 796 9.9E-221 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 Hamap MF_02005 Valine--tRNA ligase [valS]. 4 799 28.795 T 22-04-2016 IPR022874 Valine-tRNA ligase, type 2 GO:0004832 KEGG: 00970+6.1.1.9 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 16 573 3.4E-112 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 TIGRFAM TIGR00422 valS: valine--tRNA ligase 5 807 4.4E-208 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RMA_RS05855 c3f3b8a292ccc696860e1285779a10b2 812 SUPERFAMILY SSF50677 191 340 3.92E-46 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RMA_RS04785 95cde2762a0ceaac1378787827c45d88 476 SUPERFAMILY SSF46689 354 458 3.18E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 RMA_RS04785 95cde2762a0ceaac1378787827c45d88 476 Pfam PF00072 Response regulator receiver domain 6 114 1.1E-25 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RMA_RS04785 95cde2762a0ceaac1378787827c45d88 476 Gene3D G3DSA:3.40.50.2300 2 129 2.6E-33 T 22-04-2016 RMA_RS04785 95cde2762a0ceaac1378787827c45d88 476 SUPERFAMILY SSF52540 152 372 6.96E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04785 95cde2762a0ceaac1378787827c45d88 476 Gene3D G3DSA:1.10.10.60 410 457 8.4E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 RMA_RS04785 95cde2762a0ceaac1378787827c45d88 476 SMART SM00448 4 117 5.8E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RMA_RS04785 95cde2762a0ceaac1378787827c45d88 476 Pfam PF02954 Bacterial regulatory protein, Fis family 416 454 1.2E-7 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RMA_RS04785 95cde2762a0ceaac1378787827c45d88 476 SMART SM00382 163 304 0.0013 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS04785 95cde2762a0ceaac1378787827c45d88 476 SUPERFAMILY SSF52172 1 187 4.41E-37 T 22-04-2016 IPR011006 CheY-like superfamily RMA_RS04785 95cde2762a0ceaac1378787827c45d88 476 PANTHER PTHR32071 5 471 1.6E-147 T 22-04-2016 RMA_RS04785 95cde2762a0ceaac1378787827c45d88 476 Gene3D G3DSA:3.40.50.300 141 312 2.2E-38 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04785 95cde2762a0ceaac1378787827c45d88 476 Pfam PF00158 Sigma-54 interaction domain 152 307 2.5E-36 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RMA_RS04785 95cde2762a0ceaac1378787827c45d88 476 PANTHER PTHR32071:SF17 5 471 1.6E-147 T 22-04-2016 RMA_RS04785 95cde2762a0ceaac1378787827c45d88 476 Gene3D G3DSA:1.10.8.60 314 395 1.6E-21 T 22-04-2016 RMA_RS04785 95cde2762a0ceaac1378787827c45d88 476 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RMA_RS05740 2ac5d2d8b8258e019efc57a509491101 260 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 22-04-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 RMA_RS05740 2ac5d2d8b8258e019efc57a509491101 260 PANTHER PTHR22748 1 259 2.0E-117 T 22-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RMA_RS05740 2ac5d2d8b8258e019efc57a509491101 260 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 258 2.9E-72 T 22-04-2016 RMA_RS05740 2ac5d2d8b8258e019efc57a509491101 260 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 258 1.4E-66 T 22-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RMA_RS05740 2ac5d2d8b8258e019efc57a509491101 260 Gene3D G3DSA:3.60.10.10 1 259 5.6E-73 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RMA_RS05740 2ac5d2d8b8258e019efc57a509491101 260 PANTHER PTHR22748:SF7 1 259 2.0E-117 T 22-04-2016 RMA_RS05740 2ac5d2d8b8258e019efc57a509491101 260 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 251 3.2E-25 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RMA_RS05740 2ac5d2d8b8258e019efc57a509491101 260 SUPERFAMILY SSF56219 1 259 4.32E-72 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RMA_RS02340 4c305a92ddc2ec597f51187fd02ea65c 585 SUPERFAMILY SSF52540 327 572 4.17E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02340 4c305a92ddc2ec597f51187fd02ea65c 585 PANTHER PTHR24222 9 569 1.2E-208 T 22-04-2016 RMA_RS02340 4c305a92ddc2ec597f51187fd02ea65c 585 SUPERFAMILY SSF90123 20 320 1.83E-34 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RMA_RS02340 4c305a92ddc2ec597f51187fd02ea65c 585 Gene3D G3DSA:1.20.1560.10 21 320 4.3E-30 T 22-04-2016 RMA_RS02340 4c305a92ddc2ec597f51187fd02ea65c 585 SMART SM00382 372 559 2.8E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS02340 4c305a92ddc2ec597f51187fd02ea65c 585 ProSitePatterns PS00211 ABC transporters family signature. 484 498 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS02340 4c305a92ddc2ec597f51187fd02ea65c 585 Pfam PF00005 ABC transporter 363 511 3.2E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS02340 4c305a92ddc2ec597f51187fd02ea65c 585 Pfam PF00664 ABC transporter transmembrane region 27 284 2.7E-9 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RMA_RS02340 4c305a92ddc2ec597f51187fd02ea65c 585 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 20 572 2.0E-248 T 22-04-2016 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 RMA_RS02340 4c305a92ddc2ec597f51187fd02ea65c 585 PANTHER PTHR24222:SF0 9 569 1.2E-208 T 22-04-2016 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 RMA_RS02340 4c305a92ddc2ec597f51187fd02ea65c 585 Gene3D G3DSA:3.40.50.300 360 573 2.9E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05715 233977f6b0975314e90e4a3d223bc0d2 713 PANTHER PTHR30189 433 687 1.0E-14 T 22-04-2016 RMA_RS05715 233977f6b0975314e90e4a3d223bc0d2 713 PANTHER PTHR30189 34 398 1.0E-14 T 22-04-2016 RMA_RS05715 233977f6b0975314e90e4a3d223bc0d2 713 SUPERFAMILY SSF56935 595 680 8.24E-5 T 22-04-2016 RMA_RS05715 233977f6b0975314e90e4a3d223bc0d2 713 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 8 713 14.064 T 22-04-2016 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 RMA_RS05715 233977f6b0975314e90e4a3d223bc0d2 713 Gene3D G3DSA:2.60.450.10 31 175 8.4E-9 T 22-04-2016 RMA_RS05715 233977f6b0975314e90e4a3d223bc0d2 713 Pfam PF04453 Organic solvent tolerance protein 283 646 2.2E-44 T 22-04-2016 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 RMA_RS05880 d3861747206eab8599cdd0219f82e1df 428 PANTHER PTHR30563 169 427 1.6E-22 T 22-04-2016 RMA_RS05880 d3861747206eab8599cdd0219f82e1df 428 Pfam PF02646 RmuC family 114 393 7.4E-44 T 22-04-2016 IPR003798 DNA recombination RmuC RMA_RS04545 a88e35651de10441fcf467d075909aa3 229 Pfam PF00849 RNA pseudouridylate synthase 63 192 2.3E-10 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS04545 a88e35651de10441fcf467d075909aa3 229 Gene3D G3DSA:3.10.290.10 3 63 1.3E-17 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RMA_RS04545 a88e35651de10441fcf467d075909aa3 229 SUPERFAMILY SSF55120 61 224 4.56E-34 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS04545 a88e35651de10441fcf467d075909aa3 229 SUPERFAMILY SSF55174 3 89 5.45E-16 T 22-04-2016 RMA_RS04545 a88e35651de10441fcf467d075909aa3 229 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 22-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RMA_RS04545 a88e35651de10441fcf467d075909aa3 229 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 67 223 2.2E-38 T 22-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RMA_RS04545 a88e35651de10441fcf467d075909aa3 229 PANTHER PTHR21600 3 228 9.3E-63 T 22-04-2016 RMA_RS04545 a88e35651de10441fcf467d075909aa3 229 SMART SM00363 2 59 2.6E-11 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RMA_RS04545 a88e35651de10441fcf467d075909aa3 229 Pfam PF01479 S4 domain 3 47 2.1E-10 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RMA_RS04545 a88e35651de10441fcf467d075909aa3 229 PANTHER PTHR21600:SF2 3 228 9.3E-63 T 22-04-2016 RMA_RS02910 5209a9729c93fc103abf083d6350e93e 189 Gene3D G3DSA:3.30.1130.10 69 187 4.0E-48 T 22-04-2016 RMA_RS02910 5209a9729c93fc103abf083d6350e93e 189 Pfam PF01227 GTP cyclohydrolase I 10 185 1.5E-66 T 22-04-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RMA_RS02910 5209a9729c93fc103abf083d6350e93e 189 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 114 124 - T 22-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RMA_RS02910 5209a9729c93fc103abf083d6350e93e 189 PANTHER PTHR11109 6 185 2.8E-76 T 22-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RMA_RS02910 5209a9729c93fc103abf083d6350e93e 189 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 5 187 35.951 T 22-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RMA_RS02910 5209a9729c93fc103abf083d6350e93e 189 SUPERFAMILY SSF55620 3 186 5.93E-69 T 22-04-2016 RMA_RS02910 5209a9729c93fc103abf083d6350e93e 189 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 67 82 - T 22-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RMA_RS02910 5209a9729c93fc103abf083d6350e93e 189 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 11 185 1.2E-61 T 22-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RMA_RS02910 5209a9729c93fc103abf083d6350e93e 189 Gene3D G3DSA:1.10.286.10 4 56 1.1E-22 T 22-04-2016 RMA_RS06860 c54c7dcfb7631c33f0a155c4aaedc826 200 SUPERFAMILY SSF56024 62 197 7.63E-32 T 22-04-2016 RMA_RS06860 c54c7dcfb7631c33f0a155c4aaedc826 200 SMART SM00155 142 169 0.0031 T 22-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RMA_RS06860 c54c7dcfb7631c33f0a155c4aaedc826 200 PANTHER PTHR21248 61 195 3.5E-36 T 22-04-2016 RMA_RS06860 c54c7dcfb7631c33f0a155c4aaedc826 200 Gene3D G3DSA:3.30.870.10 61 195 2.0E-33 T 22-04-2016 RMA_RS06860 c54c7dcfb7631c33f0a155c4aaedc826 200 Pfam PF13091 PLD-like domain 75 192 1.4E-25 T 22-04-2016 IPR025202 Phospholipase D-like domain RMA_RS06285 f54bcc9b2bb82919a6750bd6a86c225a 281 Gene3D G3DSA:3.40.1010.10 10 117 5.9E-15 T 22-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RMA_RS06285 f54bcc9b2bb82919a6750bd6a86c225a 281 PIRSF PIRSF005917 2 281 1.6E-89 T 22-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RMA_RS06285 f54bcc9b2bb82919a6750bd6a86c225a 281 Gene3D G3DSA:3.30.950.10 118 228 1.0E-33 T 22-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RMA_RS06285 f54bcc9b2bb82919a6750bd6a86c225a 281 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 10 275 1.1E-68 T 22-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RMA_RS06285 f54bcc9b2bb82919a6750bd6a86c225a 281 PANTHER PTHR21091 1 229 1.0E-66 T 22-04-2016 RMA_RS06285 f54bcc9b2bb82919a6750bd6a86c225a 281 SUPERFAMILY SSF53790 8 225 6.28E-70 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RMA_RS06285 f54bcc9b2bb82919a6750bd6a86c225a 281 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 10 208 2.2E-23 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RMA_RS06285 f54bcc9b2bb82919a6750bd6a86c225a 281 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 9 227 35.22 T 22-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RMA_RS06285 f54bcc9b2bb82919a6750bd6a86c225a 281 PANTHER PTHR21091:SF18 1 229 1.0E-66 T 22-04-2016 RMA_RS06285 f54bcc9b2bb82919a6750bd6a86c225a 281 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 87 98 - T 22-04-2016 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RMA_RS00555 77650c51e1df9ae490550e5359b042f1 384 SUPERFAMILY SSF109604 13 380 1.86E-85 T 22-04-2016 RMA_RS00555 77650c51e1df9ae490550e5359b042f1 384 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 25 377 1.8E-113 T 22-04-2016 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 RMA_RS00555 77650c51e1df9ae490550e5359b042f1 384 PANTHER PTHR11373:SF25 1 372 2.1E-76 T 22-04-2016 RMA_RS00555 77650c51e1df9ae490550e5359b042f1 384 SMART SM00471 58 207 6.0E-12 T 22-04-2016 IPR003607 HD/PDEase domain RMA_RS00555 77650c51e1df9ae490550e5359b042f1 384 Pfam PF13286 Phosphohydrolase-associated domain 285 373 3.7E-23 T 22-04-2016 IPR026875 Phosphohydrolase-associated domain RMA_RS00555 77650c51e1df9ae490550e5359b042f1 384 PANTHER PTHR11373 1 372 2.1E-76 T 22-04-2016 RMA_RS00555 77650c51e1df9ae490550e5359b042f1 384 Gene3D G3DSA:1.10.3210.10 21 216 6.7E-82 T 22-04-2016 IPR006674 HD domain RMA_RS00555 77650c51e1df9ae490550e5359b042f1 384 Gene3D G3DSA:1.10.3210.10 273 378 6.7E-82 T 22-04-2016 IPR006674 HD domain RMA_RS00555 77650c51e1df9ae490550e5359b042f1 384 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 2 376 37.215 T 22-04-2016 IPR023023 Deoxyguanosinetriphosphate triphosphohydrolase, type 2 RMA_RS00555 77650c51e1df9ae490550e5359b042f1 384 Pfam PF01966 HD domain 62 196 5.0E-17 T 22-04-2016 IPR006674 HD domain RMA_RS05835 d5d909510961e36de3a3befd5076468b 203 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 5 189 1.8E-44 T 22-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RMA_RS05835 d5d909510961e36de3a3befd5076468b 203 Hamap MF_00165 Thymidylate kinase [tmk]. 8 203 24.641 T 22-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RMA_RS05835 d5d909510961e36de3a3befd5076468b 203 ProSitePatterns PS01331 Thymidylate kinase signature. 94 106 - T 22-04-2016 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RMA_RS05835 d5d909510961e36de3a3befd5076468b 203 Gene3D G3DSA:3.40.50.300 6 202 6.4E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05835 d5d909510961e36de3a3befd5076468b 203 PANTHER PTHR10344 5 203 5.3E-43 T 22-04-2016 RMA_RS05835 d5d909510961e36de3a3befd5076468b 203 Pfam PF02223 Thymidylate kinase 12 199 1.5E-55 T 22-04-2016 RMA_RS05835 d5d909510961e36de3a3befd5076468b 203 SUPERFAMILY SSF52540 5 202 1.46E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02160 57c0ad2e89488479f24a434b502bb4c4 591 Gene3D G3DSA:3.40.50.300 351 552 1.9E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02160 57c0ad2e89488479f24a434b502bb4c4 591 Gene3D G3DSA:3.40.50.300 114 219 1.9E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02160 57c0ad2e89488479f24a434b502bb4c4 591 PANTHER PTHR37937 16 571 1.3E-58 T 22-04-2016 RMA_RS02160 57c0ad2e89488479f24a434b502bb4c4 591 SUPERFAMILY SSF52540 111 553 1.33E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02160 57c0ad2e89488479f24a434b502bb4c4 591 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 120 567 8.2E-166 T 22-04-2016 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 RMA_RS02160 57c0ad2e89488479f24a434b502bb4c4 591 PANTHER PTHR37937:SF1 16 571 1.3E-58 T 22-04-2016 RMA_RS00195 26d922b514a8d784407e4efb922b508f 177 PANTHER PTHR38447 11 171 3.5E-39 T 22-04-2016 RMA_RS00195 26d922b514a8d784407e4efb922b508f 177 SMART SM01058 16 126 7.0E-33 T 22-04-2016 IPR003711 CarD-like/TRCF domain RMA_RS00195 26d922b514a8d784407e4efb922b508f 177 SUPERFAMILY SSF141259 11 81 4.97E-16 T 22-04-2016 IPR003711 CarD-like/TRCF domain RMA_RS00195 26d922b514a8d784407e4efb922b508f 177 Pfam PF02559 CarD-like/TRCF domain 17 124 1.1E-12 T 22-04-2016 IPR003711 CarD-like/TRCF domain RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 5 438 1.1E-157 T 22-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 Pfam PF01926 50S ribosome-binding GTPase 182 299 7.1E-20 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 Pfam PF01926 50S ribosome-binding GTPase 6 120 1.1E-24 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 Gene3D G3DSA:3.30.300.20 365 441 2.0E-31 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 179 346 1.3E-21 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 2 157 4.0E-27 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 PANTHER PTHR11649:SF68 5 440 5.1E-217 T 22-04-2016 RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 SUPERFAMILY SSF52540 6 171 1.63E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 Gene3D G3DSA:3.40.50.300 178 364 4.9E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 Gene3D G3DSA:3.40.50.300 6 166 5.8E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 Hamap MF_00195 GTPase Der [der]. 3 443 35.389 T 22-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 359 438 7.0E-30 T 22-04-2016 IPR032859 GTPase Der, C-terminal KH-domain-like RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 SUPERFAMILY SSF52540 137 446 3.81E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 55 70 2.4E-5 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 6 26 2.4E-5 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 PANTHER PTHR11649 5 440 5.1E-217 T 22-04-2016 RMA_RS05750 cbc6a2c96139171e4dddd97fdc7a5e6b 447 PIRSF PIRSF006485 2 447 8.9E-161 T 22-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RMA_RS03870 00fcf8253301c1eceb3ab05333ffeed9 479 Gene3D G3DSA:3.40.50.300 5 173 3.0E-20 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03870 00fcf8253301c1eceb3ab05333ffeed9 479 Pfam PF01637 ATPase domain predominantly from Archaea 5 212 1.0E-13 T 22-04-2016 IPR011579 ATPase domain GO:0005524 RMA_RS03870 00fcf8253301c1eceb3ab05333ffeed9 479 SUPERFAMILY SSF52540 4 245 4.56E-26 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03870 00fcf8253301c1eceb3ab05333ffeed9 479 PANTHER PTHR34704 3 340 1.2E-58 T 22-04-2016 RMA_RS03870 00fcf8253301c1eceb3ab05333ffeed9 479 PANTHER PTHR34704:SF1 3 340 1.2E-58 T 22-04-2016 RMA_RS07320 7ba2ff215eadecae27faca21f48f6834 162 Gene3D G3DSA:3.10.50.30 80 159 1.8E-28 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RMA_RS07320 7ba2ff215eadecae27faca21f48f6834 162 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 22-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RMA_RS07320 7ba2ff215eadecae27faca21f48f6834 162 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 4.9E-27 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RMA_RS07320 7ba2ff215eadecae27faca21f48f6834 162 Pfam PF03449 Transcription elongation factor, N-terminal 6 75 5.7E-32 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RMA_RS07320 7ba2ff215eadecae27faca21f48f6834 162 Hamap MF_00105 Transcription elongation factor GreA [greA]. 3 156 33.425 T 22-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 RMA_RS07320 7ba2ff215eadecae27faca21f48f6834 162 Gene3D G3DSA:1.10.287.180 3 76 1.0E-33 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RMA_RS07320 7ba2ff215eadecae27faca21f48f6834 162 PANTHER PTHR30437 5 157 2.0E-62 T 22-04-2016 RMA_RS07320 7ba2ff215eadecae27faca21f48f6834 162 SUPERFAMILY SSF54534 82 157 2.09E-22 T 22-04-2016 RMA_RS07320 7ba2ff215eadecae27faca21f48f6834 162 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 6 156 4.1E-61 T 22-04-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 RMA_RS07320 7ba2ff215eadecae27faca21f48f6834 162 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 18 49 - T 22-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RMA_RS07320 7ba2ff215eadecae27faca21f48f6834 162 SUPERFAMILY SSF46557 4 78 1.57E-27 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RMA_RS07320 7ba2ff215eadecae27faca21f48f6834 162 PIRSF PIRSF006092 1 159 2.7E-51 T 22-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 RMA_RS01500 0afeb58224c9cdaa55a867ec05f0769f 175 PIRSF PIRSF004749 1 174 1.3E-53 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS01500 0afeb58224c9cdaa55a867ec05f0769f 175 PANTHER PTHR10458 1 173 1.1E-64 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS01500 0afeb58224c9cdaa55a867ec05f0769f 175 Gene3D G3DSA:3.90.45.10 4 172 2.9E-60 T 22-04-2016 IPR023635 Peptide deformylase RMA_RS01500 0afeb58224c9cdaa55a867ec05f0769f 175 Hamap MF_00163 Peptide deformylase [def]. 2 170 29.952 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS01500 0afeb58224c9cdaa55a867ec05f0769f 175 PRINTS PR01576 Peptide deformylase signature 97 108 4.0E-34 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS01500 0afeb58224c9cdaa55a867ec05f0769f 175 PRINTS PR01576 Peptide deformylase signature 128 157 4.0E-34 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS01500 0afeb58224c9cdaa55a867ec05f0769f 175 PRINTS PR01576 Peptide deformylase signature 109 127 4.0E-34 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS01500 0afeb58224c9cdaa55a867ec05f0769f 175 PRINTS PR01576 Peptide deformylase signature 33 62 4.0E-34 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS01500 0afeb58224c9cdaa55a867ec05f0769f 175 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 167 4.9E-49 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS01500 0afeb58224c9cdaa55a867ec05f0769f 175 Pfam PF01327 Polypeptide deformylase 4 160 9.1E-53 T 22-04-2016 IPR023635 Peptide deformylase RMA_RS01500 0afeb58224c9cdaa55a867ec05f0769f 175 SUPERFAMILY SSF56420 3 172 8.11E-59 T 22-04-2016 IPR023635 Peptide deformylase RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 Gene3D G3DSA:1.20.1250.20 223 425 2.2E-10 T 22-04-2016 RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 PANTHER PTHR24096:SF177 557 1140 2.7E-294 T 22-04-2016 RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 SUPERFAMILY SSF103473 22 427 1.44E-26 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 SMART SM00563 463 573 4.0E-29 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 Pfam PF00501 AMP-binding enzyme 659 1045 4.3E-64 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 Gene3D G3DSA:2.30.38.10 973 1038 3.5E-12 T 22-04-2016 RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 SUPERFAMILY SSF69593 395 629 2.09E-28 T 22-04-2016 RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 ProSitePatterns PS00455 Putative AMP-binding domain signature. 810 821 - T 22-04-2016 IPR020845 AMP-binding, conserved site RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 Gene3D G3DSA:3.40.1130.10 450 621 5.2E-14 T 22-04-2016 RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 Pfam PF07690 Major Facilitator Superfamily 19 381 3.2E-18 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 Pfam PF01553 Acyltransferase 447 570 4.1E-18 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 Gene3D G3DSA:1.20.1250.20 6 199 2.8E-10 T 22-04-2016 RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 PANTHER PTHR24096 557 1140 2.7E-294 T 22-04-2016 RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 Gene3D G3DSA:3.40.50.980 641 816 2.2E-18 T 22-04-2016 RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 SUPERFAMILY SSF56801 621 1135 7.72E-89 T 22-04-2016 RMA_RS05345 903d70ac8dbfc8166d5ade50510347e8 1140 Gene3D G3DSA:3.40.50.980 817 972 8.4E-35 T 22-04-2016 RMA_RS03935 84c04efef78af77b2d48fb31db1a3d6f 316 Pfam PF02371 Transposase IS116/IS110/IS902 family 193 277 4.3E-25 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RMA_RS03935 84c04efef78af77b2d48fb31db1a3d6f 316 Gene3D G3DSA:1.10.340.30 169 212 2.6E-4 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RMA_RS03935 84c04efef78af77b2d48fb31db1a3d6f 316 PANTHER PTHR33055:SF3 2 314 6.3E-62 T 22-04-2016 RMA_RS03935 84c04efef78af77b2d48fb31db1a3d6f 316 PANTHER PTHR33055 2 314 6.3E-62 T 22-04-2016 RMA_RS03935 84c04efef78af77b2d48fb31db1a3d6f 316 Pfam PF01548 Transposase 6 149 6.3E-25 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 258 306 9.9E-26 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 3.3E-34 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 PRINTS PR00151 Porphobilinogen deaminase signature 123 140 3.3E-34 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 PRINTS PR00151 Porphobilinogen deaminase signature 75 94 3.3E-34 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 PRINTS PR00151 Porphobilinogen deaminase signature 142 159 3.3E-34 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 PRINTS PR00151 Porphobilinogen deaminase signature 44 64 3.3E-34 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 PIRSF PIRSF001438 1 351 2.3E-113 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 228 255 1.8E-7 T 22-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 Gene3D G3DSA:3.40.190.10 2 109 3.3E-44 T 22-04-2016 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 5 257 2.7E-106 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 Gene3D G3DSA:3.30.160.40 307 348 1.5E-10 T 22-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 Gene3D G3DSA:3.30.160.40 228 255 1.5E-10 T 22-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 SUPERFAMILY SSF53850 4 218 3.4E-75 T 22-04-2016 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 SUPERFAMILY SSF54782 220 258 8.11E-9 T 22-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 22-04-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 4 348 33.644 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 5 212 6.2E-71 T 22-04-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 Gene3D G3DSA:3.40.190.10 110 199 1.0E-30 T 22-04-2016 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 PANTHER PTHR11557 308 348 1.9E-115 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04275 5f22e4b4b3b210880eaf6dcc96e9b7af 351 PANTHER PTHR11557 5 258 1.9E-115 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS07190 4d4a7b172a5749f4cb66f199efef845f 209 PIRSF PIRSF016262 1 209 1.3E-59 T 22-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RMA_RS07190 4d4a7b172a5749f4cb66f199efef845f 209 Gene3D G3DSA:3.90.1550.10 5 208 5.9E-64 T 22-04-2016 RMA_RS07190 4d4a7b172a5749f4cb66f199efef845f 209 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 74 128 7.0E-26 T 22-04-2016 RMA_RS07190 4d4a7b172a5749f4cb66f199efef845f 209 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 35 190 1.2E-44 T 22-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RMA_RS07190 4d4a7b172a5749f4cb66f199efef845f 209 Pfam PF03099 Biotin/lipoate A/B protein ligase family 56 164 1.1E-7 T 22-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 RMA_RS07190 4d4a7b172a5749f4cb66f199efef845f 209 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 69 84 - T 22-04-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RMA_RS07190 4d4a7b172a5749f4cb66f199efef845f 209 SUPERFAMILY SSF55681 5 208 4.81E-59 T 22-04-2016 RMA_RS07190 4d4a7b172a5749f4cb66f199efef845f 209 PANTHER PTHR10993 20 208 6.9E-65 T 22-04-2016 RMA_RS07190 4d4a7b172a5749f4cb66f199efef845f 209 Hamap MF_00013 Octanoyltransferase [lipB]. 2 209 33.482 T 22-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RMA_RS05525 2461ef7338e22ab624ed30c036dec80b 176 Gene3D G3DSA:3.30.230.10 76 160 1.6E-30 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RMA_RS05525 2461ef7338e22ab624ed30c036dec80b 176 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 9 164 8.4E-66 T 22-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RMA_RS05525 2461ef7338e22ab624ed30c036dec80b 176 PANTHER PTHR13718 9 165 1.2E-52 T 22-04-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 RMA_RS05525 2461ef7338e22ab624ed30c036dec80b 176 Pfam PF03719 Ribosomal protein S5, C-terminal domain 88 158 1.2E-24 T 22-04-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 RMA_RS05525 2461ef7338e22ab624ed30c036dec80b 176 SUPERFAMILY SSF54211 80 159 4.05E-23 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS05525 2461ef7338e22ab624ed30c036dec80b 176 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 75 7.9E-24 T 22-04-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 RMA_RS05525 2461ef7338e22ab624ed30c036dec80b 176 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 164 31.971 T 22-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RMA_RS05525 2461ef7338e22ab624ed30c036dec80b 176 SUPERFAMILY SSF54768 9 77 4.19E-20 T 22-04-2016 RMA_RS05525 2461ef7338e22ab624ed30c036dec80b 176 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 22-04-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site RMA_RS05525 2461ef7338e22ab624ed30c036dec80b 176 Gene3D G3DSA:3.30.160.20 10 73 9.2E-24 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain RMA_RS05935 ccb0d2fba295cebbb7946e1bc68c489d 228 Pfam PF06508 Queuosine biosynthesis protein QueC 4 219 6.9E-73 T 22-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RMA_RS05935 ccb0d2fba295cebbb7946e1bc68c489d 228 PIRSF PIRSF006293 1 228 1.0E-77 T 22-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RMA_RS05935 ccb0d2fba295cebbb7946e1bc68c489d 228 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 3 225 48.273 T 22-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RMA_RS05935 ccb0d2fba295cebbb7946e1bc68c489d 228 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 5 212 4.9E-56 T 22-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RMA_RS05935 ccb0d2fba295cebbb7946e1bc68c489d 228 PANTHER PTHR11587 2 228 2.1E-88 T 22-04-2016 RMA_RS05935 ccb0d2fba295cebbb7946e1bc68c489d 228 PANTHER PTHR11587:SF3 2 228 2.1E-88 T 22-04-2016 RMA_RS05935 ccb0d2fba295cebbb7946e1bc68c489d 228 SUPERFAMILY SSF52402 2 227 6.17E-55 T 22-04-2016 RMA_RS05935 ccb0d2fba295cebbb7946e1bc68c489d 228 Gene3D G3DSA:3.40.50.620 2 227 1.2E-69 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS04620 94500039ebb4d588a31687355be3cb11 411 Gene3D G3DSA:1.10.240.10 234 315 1.6E-30 T 22-04-2016 RMA_RS04620 94500039ebb4d588a31687355be3cb11 411 Pfam PF00579 tRNA synthetases class I (W and Y) 27 322 1.9E-74 T 22-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS04620 94500039ebb4d588a31687355be3cb11 411 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 6 410 4.6E-115 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RMA_RS04620 94500039ebb4d588a31687355be3cb11 411 SUPERFAMILY SSF52374 2 322 5.87E-94 T 22-04-2016 RMA_RS04620 94500039ebb4d588a31687355be3cb11 411 SUPERFAMILY SSF55174 304 410 5.74E-16 T 22-04-2016 RMA_RS04620 94500039ebb4d588a31687355be3cb11 411 Gene3D G3DSA:3.10.290.10 316 411 2.4E-24 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RMA_RS04620 94500039ebb4d588a31687355be3cb11 411 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 1 411 42.569 T 22-04-2016 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 RMA_RS04620 94500039ebb4d588a31687355be3cb11 411 PANTHER PTHR11766 1 410 1.2E-174 T 22-04-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 RMA_RS04620 94500039ebb4d588a31687355be3cb11 411 Gene3D G3DSA:3.40.50.620 3 233 8.4E-97 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS04620 94500039ebb4d588a31687355be3cb11 411 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 43 65 1.1E-26 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RMA_RS04620 94500039ebb4d588a31687355be3cb11 411 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 184 206 1.1E-26 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RMA_RS04620 94500039ebb4d588a31687355be3cb11 411 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 163 178 1.1E-26 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RMA_RS04620 94500039ebb4d588a31687355be3cb11 411 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 217 229 1.1E-26 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RMA_RS04550 d588ed404a3232a582c6648e5114057d 957 Pfam PF00805 Pentapeptide repeats (8 copies) 460 499 0.0016 T 22-04-2016 IPR001646 Pentapeptide repeat RMA_RS04550 d588ed404a3232a582c6648e5114057d 957 Pfam PF00805 Pentapeptide repeats (8 copies) 539 576 1.2E-8 T 22-04-2016 IPR001646 Pentapeptide repeat RMA_RS04550 d588ed404a3232a582c6648e5114057d 957 PANTHER PTHR14136 362 702 1.3E-28 T 22-04-2016 RMA_RS04550 d588ed404a3232a582c6648e5114057d 957 SUPERFAMILY SSF141571 425 535 8.24E-13 T 22-04-2016 RMA_RS04550 d588ed404a3232a582c6648e5114057d 957 SUPERFAMILY SSF141571 539 685 3.34E-29 T 22-04-2016 RMA_RS04550 d588ed404a3232a582c6648e5114057d 957 PANTHER PTHR14136:SF0 362 702 1.3E-28 T 22-04-2016 RMA_RS04550 d588ed404a3232a582c6648e5114057d 957 Pfam PF13599 Pentapeptide repeats (9 copies) 605 675 1.6E-7 T 22-04-2016 IPR001646 Pentapeptide repeat RMA_RS04550 d588ed404a3232a582c6648e5114057d 957 Pfam PF13599 Pentapeptide repeats (9 copies) 57 121 9.3E-8 T 22-04-2016 IPR001646 Pentapeptide repeat RMA_RS04550 d588ed404a3232a582c6648e5114057d 957 Pfam PF13599 Pentapeptide repeats (9 copies) 351 419 9.9E-8 T 22-04-2016 IPR001646 Pentapeptide repeat RMA_RS04550 d588ed404a3232a582c6648e5114057d 957 SUPERFAMILY SSF141571 55 124 1.26E-15 T 22-04-2016 RMA_RS04550 d588ed404a3232a582c6648e5114057d 957 SUPERFAMILY SSF141571 341 452 1.26E-18 T 22-04-2016 RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 Hamap MF_01884 Transcription termination factor Rho [rho]. 31 451 230.979 T 22-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 SUPERFAMILY SSF50249 79 154 7.42E-29 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 Gene3D G3DSA:2.40.50.140 79 147 9.4E-36 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 PANTHER PTHR15184:SF34 6 176 3.9E-180 T 22-04-2016 RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 PANTHER PTHR15184:SF34 192 448 3.9E-180 T 22-04-2016 RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 TIGRFAM TIGR00767 rho: transcription termination factor Rho 32 449 3.9E-215 T 22-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 191 395 5.1E-23 T 22-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 SMART SM00382 202 369 4.8E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 SUPERFAMILY SSF68912 31 77 9.42E-10 T 22-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 PANTHER PTHR15184 6 176 3.9E-180 T 22-04-2016 RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 PANTHER PTHR15184 192 448 3.9E-180 T 22-04-2016 RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 Pfam PF07498 Rho termination factor, N-terminal domain 35 77 1.2E-14 T 22-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 SMART SM00357 82 148 1.6E-16 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 SMART SM00959 35 77 4.0E-14 T 22-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 Pfam PF07497 Rho termination factor, RNA-binding domain 82 154 1.1E-31 T 22-04-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 Gene3D G3DSA:3.40.50.300 160 449 1.6E-106 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 SUPERFAMILY SSF52540 120 403 4.99E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03760 8b45071e1d6a8fb02872dae579ffc1fa 458 Gene3D G3DSA:1.10.720.10 31 77 2.7E-17 T 22-04-2016 RMA_RS04155 2041b0b2e4bc20bfc338bc7c5c6512de 253 SUPERFAMILY SSF75625 5 246 2.09E-82 T 22-04-2016 IPR029072 YebC-like RMA_RS04155 2041b0b2e4bc20bfc338bc7c5c6512de 253 Pfam PF01709 Transcriptional regulator 5 238 1.0E-81 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like RMA_RS04155 2041b0b2e4bc20bfc338bc7c5c6512de 253 Gene3D G3DSA:3.30.70.980 136 204 2.0E-17 T 22-04-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 RMA_RS04155 2041b0b2e4bc20bfc338bc7c5c6512de 253 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 240 1.9E-98 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like RMA_RS04155 2041b0b2e4bc20bfc338bc7c5c6512de 253 Gene3D G3DSA:1.10.10.200 1 78 2.5E-29 T 22-04-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like RMA_RS04155 2041b0b2e4bc20bfc338bc7c5c6512de 253 Gene3D G3DSA:3.30.1270.10 83 135 1.8E-37 T 22-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 RMA_RS04155 2041b0b2e4bc20bfc338bc7c5c6512de 253 Gene3D G3DSA:3.30.1270.10 214 247 1.8E-37 T 22-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 RMA_RS04155 2041b0b2e4bc20bfc338bc7c5c6512de 253 PANTHER PTHR12532:SF0 1 243 8.4E-98 T 22-04-2016 RMA_RS04155 2041b0b2e4bc20bfc338bc7c5c6512de 253 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 241 32.846 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like RMA_RS04155 2041b0b2e4bc20bfc338bc7c5c6512de 253 PANTHER PTHR12532 1 243 8.4E-98 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 SMART SM00490 530 609 7.1E-20 T 22-04-2016 IPR001650 Helicase, C-terminal RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 Gene3D G3DSA:2.40.50.140 55 138 9.8E-11 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 SMART SM00487 285 475 7.8E-31 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 Pfam PF17191 RecG wedge domain 21 169 6.2E-11 T 22-04-2016 IPR033454 RecG, wedge domain RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 PANTHER PTHR24031 319 622 3.4E-102 T 22-04-2016 RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 PANTHER PTHR24031 278 302 3.4E-102 T 22-04-2016 RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 PANTHER PTHR24031 647 679 3.4E-102 T 22-04-2016 RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 Gene3D G3DSA:3.40.50.300 470 658 5.8E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 Gene3D G3DSA:3.40.50.300 277 469 1.8E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 PANTHER PTHR24031:SF249 319 622 3.4E-102 T 22-04-2016 RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 PANTHER PTHR24031:SF249 278 302 3.4E-102 T 22-04-2016 RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 PANTHER PTHR24031:SF249 647 679 3.4E-102 T 22-04-2016 RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 SUPERFAMILY SSF52540 337 623 2.81E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 Pfam PF00271 Helicase conserved C-terminal domain 483 608 2.2E-20 T 22-04-2016 IPR001650 Helicase, C-terminal RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 Pfam PF00270 DEAD/DEAH box helicase 290 447 4.2E-22 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RMA_RS05055 894e19ddd2c4f42558213c34e5e0dc65 713 SUPERFAMILY SSF50249 22 172 5.65E-21 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 392 9.2E-230 T 22-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 Gene3D G3DSA:3.40.50.300 5 211 1.8E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 Gene3D G3DSA:2.40.30.10 300 392 1.5E-46 T 22-04-2016 RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 PANTHER PTHR23115 1 392 4.4E-252 T 22-04-2016 RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 3.6E-61 T 22-04-2016 RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 PANTHER PTHR23115:SF112 1 392 4.4E-252 T 22-04-2016 RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 SUPERFAMILY SSF50447 205 301 1.0E-31 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 154 1.5E-15 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.4E-33 T 22-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 SUPERFAMILY SSF52540 9 226 9.81E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 1.3E-19 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 7.1E-25 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 7.1E-25 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 7.1E-25 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 7.1E-25 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 7.1E-25 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 SUPERFAMILY SSF50465 302 394 1.94E-36 T 22-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 Gene3D G3DSA:2.40.30.10 212 298 2.1E-38 T 22-04-2016 RMA_RS05620 a2a6ad370b1bf7fae10fcfffd847d406 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 60.638 T 22-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RMA_RS03135 9de1d6d97e0bea303e1844acf0882b33 122 PANTHER PTHR32063:SF21 1 114 9.4E-54 T 22-04-2016 RMA_RS03135 9de1d6d97e0bea303e1844acf0882b33 122 SUPERFAMILY SSF82693 40 115 7.85E-20 T 22-04-2016 RMA_RS03135 9de1d6d97e0bea303e1844acf0882b33 122 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 8.5E-10 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS03135 9de1d6d97e0bea303e1844acf0882b33 122 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 8.5E-10 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS03135 9de1d6d97e0bea303e1844acf0882b33 122 PANTHER PTHR32063 1 114 9.4E-54 T 22-04-2016 RMA_RS03135 9de1d6d97e0bea303e1844acf0882b33 122 Pfam PF00873 AcrB/AcrD/AcrF family 3 113 3.9E-33 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS03135 9de1d6d97e0bea303e1844acf0882b33 122 Gene3D G3DSA:3.30.70.1430 40 115 6.6E-23 T 22-04-2016 RMA_RS00505 858e7c8e5fb854b42ceaefc87f67dbbb 287 Gene3D G3DSA:3.90.1530.10 24 120 1.4E-34 T 22-04-2016 RMA_RS00505 858e7c8e5fb854b42ceaefc87f67dbbb 287 PANTHER PTHR33375 7 286 2.9E-78 T 22-04-2016 RMA_RS00505 858e7c8e5fb854b42ceaefc87f67dbbb 287 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 25 188 5.6E-49 T 22-04-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 RMA_RS00505 858e7c8e5fb854b42ceaefc87f67dbbb 287 SUPERFAMILY SSF109709 106 213 5.75E-32 T 22-04-2016 RMA_RS00505 858e7c8e5fb854b42ceaefc87f67dbbb 287 SUPERFAMILY SSF110849 28 116 7.85E-26 T 22-04-2016 IPR003115 ParB/Sulfiredoxin RMA_RS00505 858e7c8e5fb854b42ceaefc87f67dbbb 287 SMART SM00470 28 114 4.8E-35 T 22-04-2016 IPR003115 ParB/Sulfiredoxin RMA_RS00505 858e7c8e5fb854b42ceaefc87f67dbbb 287 Pfam PF02195 ParB-like nuclease domain 30 114 6.9E-27 T 22-04-2016 IPR003115 ParB/Sulfiredoxin RMA_RS03660 548c2ffca2d09b5f279bc2af22b7c405 209 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 14 97 5.9E-25 T 22-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RMA_RS03660 548c2ffca2d09b5f279bc2af22b7c405 209 SUPERFAMILY SSF46609 6 99 3.27E-29 T 22-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RMA_RS03660 548c2ffca2d09b5f279bc2af22b7c405 209 SUPERFAMILY SSF54719 101 207 1.96E-45 T 22-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RMA_RS03660 548c2ffca2d09b5f279bc2af22b7c405 209 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 105 205 7.6E-40 T 22-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RMA_RS03660 548c2ffca2d09b5f279bc2af22b7c405 209 PANTHER PTHR11404:SF8 9 207 4.8E-105 T 22-04-2016 RMA_RS03660 548c2ffca2d09b5f279bc2af22b7c405 209 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 172 179 - T 22-04-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RMA_RS03660 548c2ffca2d09b5f279bc2af22b7c405 209 Gene3D G3DSA:1.10.287.990 34 97 8.2E-21 T 22-04-2016 RMA_RS03660 548c2ffca2d09b5f279bc2af22b7c405 209 PRINTS PR01703 Manganese superoxide dismutase signature 81 94 1.8E-21 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RMA_RS03660 548c2ffca2d09b5f279bc2af22b7c405 209 PRINTS PR01703 Manganese superoxide dismutase signature 38 51 1.8E-21 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RMA_RS03660 548c2ffca2d09b5f279bc2af22b7c405 209 PRINTS PR01703 Manganese superoxide dismutase signature 134 142 1.8E-21 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RMA_RS03660 548c2ffca2d09b5f279bc2af22b7c405 209 PRINTS PR01703 Manganese superoxide dismutase signature 17 28 1.8E-21 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RMA_RS03660 548c2ffca2d09b5f279bc2af22b7c405 209 PRINTS PR01703 Manganese superoxide dismutase signature 170 182 1.8E-21 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RMA_RS03660 548c2ffca2d09b5f279bc2af22b7c405 209 PIRSF PIRSF000349 1 209 8.5E-81 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RMA_RS03660 548c2ffca2d09b5f279bc2af22b7c405 209 PANTHER PTHR11404 9 207 4.8E-105 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RMA_RS05925 ea42d3280eadae3adcbb2ae8171d3269 425 SMART SM00994 9 48 1.2E-20 T 22-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RMA_RS05925 ea42d3280eadae3adcbb2ae8171d3269 425 Gene3D G3DSA:1.10.8.60 311 406 1.2E-31 T 22-04-2016 RMA_RS05925 ea42d3280eadae3adcbb2ae8171d3269 425 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 312 382 1.8E-13 T 22-04-2016 IPR019489 Clp ATPase, C-terminal RMA_RS05925 ea42d3280eadae3adcbb2ae8171d3269 425 PANTHER PTHR11262 7 405 1.7E-231 T 22-04-2016 RMA_RS05925 ea42d3280eadae3adcbb2ae8171d3269 425 Pfam PF06689 ClpX C4-type zinc finger 11 47 3.2E-17 T 22-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RMA_RS05925 ea42d3280eadae3adcbb2ae8171d3269 425 Gene3D G3DSA:3.40.50.300 61 250 5.5E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05925 ea42d3280eadae3adcbb2ae8171d3269 425 Gene3D G3DSA:3.40.50.300 289 306 5.5E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05925 ea42d3280eadae3adcbb2ae8171d3269 425 SUPERFAMILY SSF52540 58 399 5.26E-74 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05925 ea42d3280eadae3adcbb2ae8171d3269 425 Pfam PF07724 AAA domain (Cdc48 subfamily) 109 306 1.9E-49 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RMA_RS05925 ea42d3280eadae3adcbb2ae8171d3269 425 SMART SM01086 312 405 1.2E-23 T 22-04-2016 IPR019489 Clp ATPase, C-terminal RMA_RS05925 ea42d3280eadae3adcbb2ae8171d3269 425 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 4 401 3.7E-192 T 22-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RMA_RS05925 ea42d3280eadae3adcbb2ae8171d3269 425 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 3 409 51.236 T 22-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RMA_RS05925 ea42d3280eadae3adcbb2ae8171d3269 425 SMART SM00382 108 265 5.4E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS05925 ea42d3280eadae3adcbb2ae8171d3269 425 SUPERFAMILY SSF57716 10 45 1.41E-10 T 22-04-2016 RMA_RS05925 ea42d3280eadae3adcbb2ae8171d3269 425 PANTHER PTHR11262:SF4 7 405 1.7E-231 T 22-04-2016 RMA_RS03670 01899458defde75fb726b9468e032334 270 Pfam PF02237 Biotin protein ligase C terminal domain 220 261 3.1E-5 T 22-04-2016 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15 RMA_RS03670 01899458defde75fb726b9468e032334 270 Gene3D G3DSA:3.30.930.10 5 213 1.1E-60 T 22-04-2016 RMA_RS03670 01899458defde75fb726b9468e032334 270 SUPERFAMILY SSF55681 6 213 3.05E-50 T 22-04-2016 RMA_RS03670 01899458defde75fb726b9468e032334 270 PANTHER PTHR12835 116 261 9.7E-50 T 22-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RMA_RS03670 01899458defde75fb726b9468e032334 270 PANTHER PTHR12835 7 100 9.7E-50 T 22-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RMA_RS03670 01899458defde75fb726b9468e032334 270 Pfam PF03099 Biotin/lipoate A/B protein ligase family 25 154 1.5E-16 T 22-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 RMA_RS03670 01899458defde75fb726b9468e032334 270 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 109 247 8.7E-27 T 22-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RMA_RS05595 b2b7bb3ca1c70a064d7efae42d9f417f 273 Gene3D G3DSA:2.40.50.140 1 114 1.9E-52 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS05595 b2b7bb3ca1c70a064d7efae42d9f417f 273 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 4.9E-34 T 22-04-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05595 b2b7bb3ca1c70a064d7efae42d9f417f 273 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 46.635 T 22-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RMA_RS05595 b2b7bb3ca1c70a064d7efae42d9f417f 273 SMART SM01383 42 118 8.7E-47 T 22-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05595 b2b7bb3ca1c70a064d7efae42d9f417f 273 PIRSF PIRSF002158 4 273 1.2E-104 T 22-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05595 b2b7bb3ca1c70a064d7efae42d9f417f 273 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 22-04-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 RMA_RS05595 b2b7bb3ca1c70a064d7efae42d9f417f 273 SUPERFAMILY SSF50249 2 125 2.98E-49 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS05595 b2b7bb3ca1c70a064d7efae42d9f417f 273 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 273 4.2E-131 T 22-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RMA_RS05595 b2b7bb3ca1c70a064d7efae42d9f417f 273 Gene3D G3DSA:2.30.30.30 120 194 2.0E-30 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 RMA_RS05595 b2b7bb3ca1c70a064d7efae42d9f417f 273 SUPERFAMILY SSF50104 126 272 2.89E-61 T 22-04-2016 IPR008991 Translation protein SH3-like domain RMA_RS05595 b2b7bb3ca1c70a064d7efae42d9f417f 273 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 250 1.7E-56 T 22-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RMA_RS05595 b2b7bb3ca1c70a064d7efae42d9f417f 273 PANTHER PTHR13691 1 273 5.1E-142 T 22-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05595 b2b7bb3ca1c70a064d7efae42d9f417f 273 Gene3D G3DSA:4.10.950.10 196 272 9.3E-36 T 22-04-2016 IPR014726 Ribosomal protein L2, domain 3 RMA_RS05595 b2b7bb3ca1c70a064d7efae42d9f417f 273 SMART SM01382 124 252 7.8E-90 T 22-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RMA_RS03430 d1408bf62579615acc46844f0aa249b3 99 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 13 45 4.9E-4 T 22-04-2016 IPR001451 Hexapeptide repeat RMA_RS03430 d1408bf62579615acc46844f0aa249b3 99 PANTHER PTHR13061 1 88 4.8E-29 T 22-04-2016 RMA_RS03430 d1408bf62579615acc46844f0aa249b3 99 SUPERFAMILY SSF51161 4 90 1.25E-19 T 22-04-2016 IPR011004 Trimeric LpxA-like RMA_RS03430 d1408bf62579615acc46844f0aa249b3 99 Gene3D G3DSA:2.160.10.10 5 87 5.1E-20 T 22-04-2016 RMA_RS00600 63e018de8e58914dbd51fcb1bb57b444 273 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 14 121 5.5E-42 T 22-04-2016 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RMA_RS00600 63e018de8e58914dbd51fcb1bb57b444 273 SUPERFAMILY SSF55620 175 255 1.48E-6 T 22-04-2016 RMA_RS00600 63e018de8e58914dbd51fcb1bb57b444 273 Gene3D G3DSA:3.30.1130.10 14 127 1.4E-36 T 22-04-2016 RMA_RS00600 63e018de8e58914dbd51fcb1bb57b444 273 TIGRFAM TIGR03138 QueF: queuine synthase 4 273 2.4E-108 T 22-04-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RMA_RS00600 63e018de8e58914dbd51fcb1bb57b444 273 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 273 122.933 T 22-04-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RMA_RS00600 63e018de8e58914dbd51fcb1bb57b444 273 PANTHER PTHR34354:SF1 1 272 5.8E-68 T 22-04-2016 RMA_RS00600 63e018de8e58914dbd51fcb1bb57b444 273 Pfam PF14489 QueF-like protein 185 261 5.7E-22 T 22-04-2016 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RMA_RS00600 63e018de8e58914dbd51fcb1bb57b444 273 PANTHER PTHR34354 1 272 5.8E-68 T 22-04-2016 RMA_RS00600 63e018de8e58914dbd51fcb1bb57b444 273 PIRSF PIRSF004750 1 273 5.2E-112 T 22-04-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RMA_RS00600 63e018de8e58914dbd51fcb1bb57b444 273 Gene3D G3DSA:3.30.1130.10 137 262 3.4E-42 T 22-04-2016 RMA_RS01255 48cecc277adacee4b8070cce40cf0e5d 928 Gene3D G3DSA:3.40.50.970 155 519 5.4E-68 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RMA_RS01255 48cecc277adacee4b8070cce40cf0e5d 928 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 783 926 1.8E-49 T 22-04-2016 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RMA_RS01255 48cecc277adacee4b8070cce40cf0e5d 928 SMART SM00861 585 778 1.0E-56 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RMA_RS01255 48cecc277adacee4b8070cce40cf0e5d 928 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 11 925 0.0 T 22-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RMA_RS01255 48cecc277adacee4b8070cce40cf0e5d 928 SUPERFAMILY SSF52518 121 519 3.66E-74 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RMA_RS01255 48cecc277adacee4b8070cce40cf0e5d 928 SUPERFAMILY SSF52518 570 785 8.83E-49 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RMA_RS01255 48cecc277adacee4b8070cce40cf0e5d 928 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 10 47 7.5E-16 T 22-04-2016 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RMA_RS01255 48cecc277adacee4b8070cce40cf0e5d 928 Pfam PF00676 Dehydrogenase E1 component 204 520 2.5E-52 T 22-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 RMA_RS01255 48cecc277adacee4b8070cce40cf0e5d 928 PIRSF PIRSF000157 1 928 0.0 T 22-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RMA_RS01255 48cecc277adacee4b8070cce40cf0e5d 928 Pfam PF02779 Transketolase, pyrimidine binding domain 584 779 5.0E-64 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RMA_RS01255 48cecc277adacee4b8070cce40cf0e5d 928 Gene3D G3DSA:3.40.50.970 583 781 6.8E-22 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold RMA_RS01255 48cecc277adacee4b8070cce40cf0e5d 928 PANTHER PTHR23152 10 928 0.0 T 22-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 Gene3D G3DSA:3.30.70.240 404 491 2.6E-19 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 Pfam PF00009 Elongation factor Tu GTP binding domain 6 184 1.3E-49 T 22-04-2016 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 SUPERFAMILY SSF54980 296 373 3.38E-17 T 22-04-2016 IPR009022 Elongation factor G, III-V domain RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 PANTHER PTHR23115:SF175 400 598 0.0 T 22-04-2016 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 PANTHER PTHR23115:SF175 1 376 0.0 T 22-04-2016 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 Pfam PF00679 Elongation factor G C-terminus 402 485 5.4E-20 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 TIGRFAM TIGR01393 lepA: elongation factor 4 6 597 3.1E-285 T 22-04-2016 IPR006297 Elongation factor 4 GO:0005525 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 Pfam PF06421 GTP-binding protein LepA C-terminus 490 596 3.9E-48 T 22-04-2016 IPR013842 GTP-binding protein LepA, C-terminal RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 Gene3D G3DSA:3.30.70.870 296 372 1.3E-24 T 22-04-2016 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 PANTHER PTHR23115 400 598 0.0 T 22-04-2016 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 PANTHER PTHR23115 1 376 0.0 T 22-04-2016 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 Gene3D G3DSA:3.40.50.300 1 198 3.4E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 SMART SM00838 401 487 0.0088 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 Gene3D G3DSA:2.40.30.10 199 292 6.2E-21 T 22-04-2016 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 PRINTS PR00315 GTP-binding elongation factor signature 77 87 7.6E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 PRINTS PR00315 GTP-binding elongation factor signature 93 104 7.6E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 PRINTS PR00315 GTP-binding elongation factor signature 9 22 7.6E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 PRINTS PR00315 GTP-binding elongation factor signature 52 60 7.6E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 PRINTS PR00315 GTP-binding elongation factor signature 129 138 7.6E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 Hamap MF_00071 Elongation factor 4 [lepA]. 1 600 291.519 T 22-04-2016 IPR006297 Elongation factor 4 GO:0005525 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 SUPERFAMILY SSF52540 1 232 7.23E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 Pfam PF03144 Elongation factor Tu domain 2 208 278 1.8E-7 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 45 60 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 176 1.1E-16 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RMA_RS02000 881f3d1c94e0900a375502821044ea7c 600 SUPERFAMILY SSF54980 403 496 4.75E-22 T 22-04-2016 IPR009022 Elongation factor G, III-V domain RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 408 421 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 Pfam PF04539 Sigma-70 region 3 463 539 4.9E-25 T 22-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 380 617 2.2E-115 T 22-04-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 Gene3D G3DSA:1.10.10.10 547 616 2.0E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 578 604 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 Pfam PF04546 Sigma-70, non-essential region 145 353 2.6E-26 T 22-04-2016 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 5 618 42.114 T 22-04-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 Pfam PF00140 Sigma-70 factor, region 1.2 103 133 1.1E-12 T 22-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 Gene3D G3DSA:1.10.10.10 457 508 5.2E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 Gene3D G3DSA:1.10.601.10 117 453 7.9E-104 T 22-04-2016 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 SUPERFAMILY SSF88659 457 531 9.59E-19 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 Pfam PF03979 Sigma-70 factor, region 1.1 10 89 1.8E-11 T 22-04-2016 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 380 607 1.2E-39 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 SUPERFAMILY SSF88659 518 614 6.73E-25 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 PRINTS PR00046 Major sigma-70 factor signature 578 593 1.1E-30 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 PRINTS PR00046 Major sigma-70 factor signature 557 569 1.1E-30 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 PRINTS PR00046 Major sigma-70 factor signature 432 440 1.1E-30 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 PRINTS PR00046 Major sigma-70 factor signature 408 421 1.1E-30 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 PRINTS PR00046 Major sigma-70 factor signature 593 604 1.1E-30 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 PANTHER PTHR30603:SF0 11 157 8.4E-200 T 22-04-2016 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 PANTHER PTHR30603:SF0 338 624 8.4E-200 T 22-04-2016 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 Pfam PF04545 Sigma-70, region 4 553 606 1.9E-18 T 22-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 Pfam PF04542 Sigma-70 region 2 384 453 1.9E-21 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 PANTHER PTHR30603 11 157 8.4E-200 T 22-04-2016 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 PANTHER PTHR30603 338 624 8.4E-200 T 22-04-2016 RMA_RS07335 1cf6f3921a06fa2d4c9de123cca7f055 633 SUPERFAMILY SSF88946 120 451 2.51E-85 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS00110 423a06e77932cf86fa012b72a8f7c49c 1784 SUPERFAMILY SSF103515 1473 1782 1.1E-32 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS00110 423a06e77932cf86fa012b72a8f7c49c 1784 ProDom PD214418 ANTIGEN SURFACE CELL PRECURSOR SCA1 SIGNAL RP016 1 340 5.0E-145 T 22-04-2016 IPR020179 Antigen surface cell precursor, Sca1 RMA_RS00110 423a06e77932cf86fa012b72a8f7c49c 1784 SMART SM00869 1504 1774 8.5E-26 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS00110 423a06e77932cf86fa012b72a8f7c49c 1784 Gene3D G3DSA:2.40.128.130 1453 1782 2.9E-26 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS00110 423a06e77932cf86fa012b72a8f7c49c 1784 Pfam PF03797 Autotransporter beta-domain 1504 1769 1.3E-42 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS06295 d58f256a9c635a75d02d6c750861f8b0 53 Pfam PF02416 mttA/Hcf106 family 3 53 1.1E-13 T 22-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RMA_RS06295 d58f256a9c635a75d02d6c750861f8b0 53 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 2 47 3.5E-21 T 22-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RMA_RS06295 d58f256a9c635a75d02d6c750861f8b0 53 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 53 18.552 T 22-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RMA_RS06950 df8e7c3b80cf18e40b54018be84ae2a1 116 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 44 55 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RMA_RS06950 df8e7c3b80cf18e40b54018be84ae2a1 116 Gene3D G3DSA:1.10.1060.10 52 95 7.0E-8 T 22-04-2016 RMA_RS06950 df8e7c3b80cf18e40b54018be84ae2a1 116 PANTHER PTHR11938 1 85 7.3E-26 T 22-04-2016 RMA_RS06950 df8e7c3b80cf18e40b54018be84ae2a1 116 Gene3D G3DSA:3.30.70.20 3 51 8.7E-17 T 22-04-2016 RMA_RS06950 df8e7c3b80cf18e40b54018be84ae2a1 116 SUPERFAMILY SSF54862 1 64 2.15E-20 T 22-04-2016 RMA_RS06950 df8e7c3b80cf18e40b54018be84ae2a1 116 Pfam PF11953 Domain of unknown function (DUF3470) 80 108 2.0E-10 T 22-04-2016 IPR022569 Ferredoxin, C-terminal RMA_RS06950 df8e7c3b80cf18e40b54018be84ae2a1 116 PRINTS PR00354 7Fe ferredoxin signature 9 19 9.1E-18 T 22-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RMA_RS06950 df8e7c3b80cf18e40b54018be84ae2a1 116 PRINTS PR00354 7Fe ferredoxin signature 19 29 9.1E-18 T 22-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RMA_RS06950 df8e7c3b80cf18e40b54018be84ae2a1 116 PRINTS PR00354 7Fe ferredoxin signature 39 56 9.1E-18 T 22-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RMA_RS06950 df8e7c3b80cf18e40b54018be84ae2a1 116 PANTHER PTHR11938:SF101 1 85 7.3E-26 T 22-04-2016 RMA_RS06950 df8e7c3b80cf18e40b54018be84ae2a1 116 Pfam PF12838 4Fe-4S dicluster domain 9 58 3.6E-7 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RMA_RS06300 3c8896496a027c9a8d1c346ea4b6c3dc 199 SUPERFAMILY SSF101307 138 189 6.02E-35 T 22-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 RMA_RS06300 3c8896496a027c9a8d1c346ea4b6c3dc 199 SUPERFAMILY SSF101307 3 110 6.02E-35 T 22-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 RMA_RS06300 3c8896496a027c9a8d1c346ea4b6c3dc 199 PANTHER PTHR36305 131 196 3.1E-26 T 22-04-2016 RMA_RS06300 3c8896496a027c9a8d1c346ea4b6c3dc 199 PANTHER PTHR36305 70 114 3.1E-26 T 22-04-2016 RMA_RS06300 3c8896496a027c9a8d1c346ea4b6c3dc 199 PANTHER PTHR36305 7 47 3.1E-26 T 22-04-2016 RMA_RS06300 3c8896496a027c9a8d1c346ea4b6c3dc 199 Gene3D G3DSA:1.10.3760.10 148 186 8.3E-4 T 22-04-2016 IPR027416 YutG-like domain RMA_RS06300 3c8896496a027c9a8d1c346ea4b6c3dc 199 PIRSF PIRSF006162 1 198 8.0E-57 T 22-04-2016 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RMA_RS06300 3c8896496a027c9a8d1c346ea4b6c3dc 199 Pfam PF04608 Phosphatidylglycerophosphatase A 9 190 1.1E-42 T 22-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 RMA_RS05015 95c7061911ba4bc72529f72d7ed50926 142 PANTHER PTHR33909:SF1 13 141 1.0E-25 T 22-04-2016 RMA_RS05015 95c7061911ba4bc72529f72d7ed50926 142 Pfam PF02699 Preprotein translocase subunit 37 113 4.3E-26 T 22-04-2016 IPR003849 Preprotein translocase YajC RMA_RS05015 95c7061911ba4bc72529f72d7ed50926 142 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 34 117 7.2E-32 T 22-04-2016 IPR003849 Preprotein translocase YajC RMA_RS05015 95c7061911ba4bc72529f72d7ed50926 142 PANTHER PTHR33909 13 141 1.0E-25 T 22-04-2016 RMA_RS05015 95c7061911ba4bc72529f72d7ed50926 142 PRINTS PR01853 Bacterial YajC preprotein translocase signature 35 55 1.6E-16 T 22-04-2016 IPR003849 Preprotein translocase YajC RMA_RS05015 95c7061911ba4bc72529f72d7ed50926 142 PRINTS PR01853 Bacterial YajC preprotein translocase signature 73 91 1.6E-16 T 22-04-2016 IPR003849 Preprotein translocase YajC RMA_RS05015 95c7061911ba4bc72529f72d7ed50926 142 SMART SM01323 33 117 1.2E-35 T 22-04-2016 IPR003849 Preprotein translocase YajC RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 PANTHER PTHR23083 32 378 2.3E-74 T 22-04-2016 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 SMART SM00028 84 117 0.0088 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 SMART SM00028 322 355 0.076 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 SMART SM00028 288 321 4.0E-6 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 SMART SM00028 152 185 4.6E-6 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 SMART SM00028 220 253 3.6E-4 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 SMART SM00028 254 287 0.0014 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 SMART SM00028 50 83 4.1E-5 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 SMART SM00028 118 151 4.3E-8 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 SMART SM00028 186 219 1.4E-5 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 Pfam PF13414 TPR repeat 266 295 2.6E-6 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 Pfam PF13414 TPR repeat 296 336 7.6E-8 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 Pfam PF13414 TPR repeat 159 200 2.3E-8 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 Gene3D G3DSA:1.25.40.10 118 227 1.4E-37 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 Pfam PF13181 Tetratricopeptide repeat 84 114 0.0062 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 Pfam PF07719 Tetratricopeptide repeat 50 79 2.1E-6 T 22-04-2016 IPR013105 Tetratricopeptide repeat 2 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 Pfam PF07719 Tetratricopeptide repeat 220 250 3.7E-5 T 22-04-2016 IPR013105 Tetratricopeptide repeat 2 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 SUPERFAMILY SSF48452 50 350 2.69E-56 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 Pfam PF00515 Tetratricopeptide repeat 118 151 3.5E-9 T 22-04-2016 IPR001440 Tetratricopeptide repeat 1 GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 Gene3D G3DSA:1.25.40.10 228 288 3.7E-19 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 Gene3D G3DSA:1.25.40.10 289 369 5.7E-16 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS03915 4973e5f90f6341c31453b8dc0248f8bc 389 Gene3D G3DSA:1.25.40.10 50 117 3.9E-16 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS01850 9247239635f47ec2dd12222994da80be 175 PANTHER PTHR11961 9 169 9.1E-54 T 22-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RMA_RS01850 9247239635f47ec2dd12222994da80be 175 PANTHER PTHR11961:SF6 9 169 9.1E-54 T 22-04-2016 RMA_RS01850 9247239635f47ec2dd12222994da80be 175 SUPERFAMILY SSF46626 71 170 1.72E-27 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RMA_RS01850 9247239635f47ec2dd12222994da80be 175 Pfam PF00034 Cytochrome c 74 170 1.2E-5 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RMA_RS01850 9247239635f47ec2dd12222994da80be 175 PRINTS PR00604 Class IA and IB cytochrome C signature 83 90 2.5E-13 T 22-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RMA_RS01850 9247239635f47ec2dd12222994da80be 175 PRINTS PR00604 Class IA and IB cytochrome C signature 96 111 2.5E-13 T 22-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RMA_RS01850 9247239635f47ec2dd12222994da80be 175 PRINTS PR00604 Class IA and IB cytochrome C signature 112 122 2.5E-13 T 22-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RMA_RS01850 9247239635f47ec2dd12222994da80be 175 PRINTS PR00604 Class IA and IB cytochrome C signature 162 170 2.5E-13 T 22-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RMA_RS01850 9247239635f47ec2dd12222994da80be 175 PRINTS PR00604 Class IA and IB cytochrome C signature 145 155 2.5E-13 T 22-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RMA_RS01850 9247239635f47ec2dd12222994da80be 175 PRINTS PR00604 Class IA and IB cytochrome C signature 126 142 2.5E-13 T 22-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RMA_RS01850 9247239635f47ec2dd12222994da80be 175 Gene3D G3DSA:1.10.760.10 71 171 8.2E-32 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RMA_RS03050 968b9502ea88629a12368797f588105d 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 172 190 8.1E-147 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 140 152 8.1E-147 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 252 273 8.1E-147 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 21 46 8.1E-147 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 322 343 8.1E-147 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 357 375 8.1E-147 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 70 93 8.1E-147 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 201 220 8.1E-147 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 385 404 8.1E-147 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 98 122 8.1E-147 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 298 313 8.1E-147 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 435 456 8.1E-147 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 22 529 1.1E-218 T 22-04-2016 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 PANTHER PTHR10422 7 531 0.0 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 30 475 2.2E-154 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 SUPERFAMILY SSF81442 18 530 1.7E-213 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 254 308 - T 22-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 Gene3D G3DSA:1.20.210.10 33 496 3.4E-225 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS03050 968b9502ea88629a12368797f588105d 532 PANTHER PTHR10422:SF18 7 531 0.0 T 22-04-2016 RMA_RS01405 04a629d9bcf8c978a40db2d5056e9937 148 Pfam PF03797 Autotransporter beta-domain 3 140 3.3E-9 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS01405 04a629d9bcf8c978a40db2d5056e9937 148 Gene3D G3DSA:2.40.128.130 4 146 9.2E-10 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS01405 04a629d9bcf8c978a40db2d5056e9937 148 SUPERFAMILY SSF103515 3 147 7.59E-13 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS04530 4499b4c5fd792cdd155b138227b13039 495 SUPERFAMILY SSF48024 25 137 3.01E-29 T 22-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RMA_RS04530 4499b4c5fd792cdd155b138227b13039 495 Gene3D G3DSA:1.10.860.10 27 128 5.0E-24 T 22-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RMA_RS04530 4499b4c5fd792cdd155b138227b13039 495 Pfam PF00772 DnaB-like helicase N terminal domain 27 128 4.1E-25 T 22-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RMA_RS04530 4499b4c5fd792cdd155b138227b13039 495 SUPERFAMILY SSF52540 204 479 4.78E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04530 4499b4c5fd792cdd155b138227b13039 495 Pfam PF03796 DnaB-like helicase C terminal domain 205 486 3.9E-101 T 22-04-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 RMA_RS04530 4499b4c5fd792cdd155b138227b13039 495 Gene3D G3DSA:3.40.50.300 192 488 4.6E-91 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04530 4499b4c5fd792cdd155b138227b13039 495 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 27 488 2.1E-153 T 22-04-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 RMA_RS04530 4499b4c5fd792cdd155b138227b13039 495 PANTHER PTHR30153 449 495 4.9E-161 T 22-04-2016 RMA_RS04530 4499b4c5fd792cdd155b138227b13039 495 PANTHER PTHR30153 11 431 4.9E-161 T 22-04-2016 RMA_RS01125 d59697a85bd0dcde0bfb350f07fdaf45 768 Pfam PF07244 Surface antigen variable number repeat 97 172 1.7E-12 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 RMA_RS01125 d59697a85bd0dcde0bfb350f07fdaf45 768 Pfam PF07244 Surface antigen variable number repeat 177 263 1.1E-12 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 RMA_RS01125 d59697a85bd0dcde0bfb350f07fdaf45 768 Pfam PF07244 Surface antigen variable number repeat 268 342 6.9E-6 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 RMA_RS01125 d59697a85bd0dcde0bfb350f07fdaf45 768 Pfam PF07244 Surface antigen variable number repeat 347 420 1.8E-12 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 RMA_RS01125 d59697a85bd0dcde0bfb350f07fdaf45 768 Pfam PF07244 Surface antigen variable number repeat 27 93 3.5E-8 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 RMA_RS01125 d59697a85bd0dcde0bfb350f07fdaf45 768 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 9 768 22.924 T 22-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RMA_RS01125 d59697a85bd0dcde0bfb350f07fdaf45 768 Pfam PF01103 Surface antigen 447 766 1.6E-58 T 22-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 RMA_RS01125 d59697a85bd0dcde0bfb350f07fdaf45 768 Gene3D G3DSA:2.40.160.50 593 765 2.7E-16 T 22-04-2016 RMA_RS01125 d59697a85bd0dcde0bfb350f07fdaf45 768 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 27 767 6.2E-224 T 22-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RMA_RS01125 d59697a85bd0dcde0bfb350f07fdaf45 768 PIRSF PIRSF006076 2 768 7.9E-222 T 22-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RMA_RS01125 d59697a85bd0dcde0bfb350f07fdaf45 768 PANTHER PTHR12815:SF11 9 766 1.5E-160 T 22-04-2016 RMA_RS01125 d59697a85bd0dcde0bfb350f07fdaf45 768 PANTHER PTHR12815 9 766 1.5E-160 T 22-04-2016 RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 SUPERFAMILY SSF47781 410 597 1.39E-44 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 336 351 - T 22-04-2016 IPR033136 NAD-dependent DNA ligase, conserved site RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 Gene3D G3DSA:1.10.287.610 5 75 5.7E-23 T 22-04-2016 RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 PANTHER PTHR23389 9 542 1.4E-170 T 22-04-2016 RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 Gene3D G3DSA:2.40.50.140 326 395 1.2E-32 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 Gene3D G3DSA:1.10.150.20 515 599 2.9E-19 T 22-04-2016 RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 SMART SM00292 612 689 1.8E-11 T 22-04-2016 IPR001357 BRCT domain RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 326 403 3.3E-35 T 22-04-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 SUPERFAMILY SSF52113 613 687 1.28E-16 T 22-04-2016 IPR001357 BRCT domain RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 615 686 4.5E-13 T 22-04-2016 IPR001357 BRCT domain RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 Gene3D G3DSA:3.40.50.10190 612 687 1.2E-21 T 22-04-2016 IPR001357 BRCT domain RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 11 322 2.4E-120 T 22-04-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 Gene3D G3DSA:3.30.470.30 127 257 1.8E-47 T 22-04-2016 RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 SUPERFAMILY SSF50249 326 405 1.13E-26 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 SUPERFAMILY SSF56091 9 321 3.29E-114 T 22-04-2016 RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 PANTHER PTHR23389:SF9 9 542 1.4E-170 T 22-04-2016 RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 PIRSF PIRSF001604 3 689 5.7E-251 T 22-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 Gene3D G3DSA:1.10.150.20 440 514 1.0E-24 T 22-04-2016 RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 Hamap MF_01588 DNA ligase [ligA]. 10 686 47.761 T 22-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 123 152 - T 22-04-2016 IPR018239 NAD-dependent DNA ligase, active site RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 19 682 2.8E-229 T 22-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 SMART SM00532 11 453 1.0E-262 T 22-04-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 RMA_RS06055 499c53c02bd7ebbb62326ee010bb7bcd 689 Pfam PF12826 Helix-hairpin-helix motif 521 594 4.9E-11 T 22-04-2016 RMA_RS07305 66e1b8987e132f5e2d0a4e665cde86af 212 Gene3D G3DSA:2.50.20.10 27 192 5.6E-20 T 22-04-2016 RMA_RS07305 66e1b8987e132f5e2d0a4e665cde86af 212 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 37 188 2.1E-29 T 22-04-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like RMA_RS07305 66e1b8987e132f5e2d0a4e665cde86af 212 SUPERFAMILY SSF89392 27 192 1.45E-24 T 22-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX RMA_RS06110 96c016fa2f162ab57d7ace7c1038f5d5 191 SUPERFAMILY SSF52540 1 185 9.4E-21 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06110 96c016fa2f162ab57d7ace7c1038f5d5 191 Gene3D G3DSA:3.40.50.300 1 187 1.8E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06110 96c016fa2f162ab57d7ace7c1038f5d5 191 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 181 1.3E-24 T 22-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RMA_RS06110 96c016fa2f162ab57d7ace7c1038f5d5 191 PANTHER PTHR10695:SF26 1 188 8.5E-19 T 22-04-2016 RMA_RS06110 96c016fa2f162ab57d7ace7c1038f5d5 191 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 190 17.084 T 22-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RMA_RS06110 96c016fa2f162ab57d7ace7c1038f5d5 191 Pfam PF01121 Dephospho-CoA kinase 3 169 6.3E-20 T 22-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RMA_RS06110 96c016fa2f162ab57d7ace7c1038f5d5 191 PANTHER PTHR10695 1 188 8.5E-19 T 22-04-2016 RMA_RS06510 961767a8ead51e55051ee465374c1aa7 103 SUPERFAMILY SSF55973 1 100 2.75E-36 T 22-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RMA_RS06510 961767a8ead51e55051ee465374c1aa7 103 Gene3D G3DSA:3.30.300.10 1 102 5.3E-42 T 22-04-2016 RMA_RS06510 961767a8ead51e55051ee465374c1aa7 103 PANTHER PTHR11964 1 101 4.1E-54 T 22-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RMA_RS06510 961767a8ead51e55051ee465374c1aa7 103 PANTHER PTHR11964:SF1 1 101 4.1E-54 T 22-04-2016 RMA_RS06510 961767a8ead51e55051ee465374c1aa7 103 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 1 95 1.8E-35 T 22-04-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 Gene3D G3DSA:3.30.70.870 310 407 4.5E-32 T 22-04-2016 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 145 4.0E-24 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 SUPERFAMILY SSF50447 151 173 3.95E-30 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 SUPERFAMILY SSF50447 206 306 3.95E-30 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 SUPERFAMILY SSF54980 406 520 4.7E-24 T 22-04-2016 IPR009022 Elongation factor G, III-V domain RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 Gene3D G3DSA:3.40.50.300 2 211 1.7E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 PANTHER PTHR23115:SF14 190 600 1.6E-272 T 22-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 PANTHER PTHR23115:SF14 4 169 1.6E-272 T 22-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 Gene3D G3DSA:3.30.70.240 408 489 3.0E-28 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 PANTHER PTHR23115 190 600 1.6E-272 T 22-04-2016 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 PANTHER PTHR23115 4 169 1.6E-272 T 22-04-2016 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 4 606 7.9E-290 T 22-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 Pfam PF00009 Elongation factor Tu GTP binding domain 3 201 1.5E-55 T 22-04-2016 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 Gene3D G3DSA:2.40.30.10 212 309 1.3E-25 T 22-04-2016 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 SUPERFAMILY SSF52540 3 225 7.59E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 Gene3D G3DSA:2.40.50.250 490 583 7.8E-41 T 22-04-2016 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 Pfam PF00679 Elongation factor G C-terminus 405 487 5.4E-19 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 Pfam PF03144 Elongation factor Tu domain 2 225 296 3.7E-13 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 SUPERFAMILY SSF54980 309 394 3.49E-12 T 22-04-2016 IPR009022 Elongation factor G, III-V domain RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 43 58 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 PRINTS PR00315 GTP-binding elongation factor signature 50 58 4.0E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 PRINTS PR00315 GTP-binding elongation factor signature 70 80 4.0E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 PRINTS PR00315 GTP-binding elongation factor signature 6 19 4.0E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 PRINTS PR00315 GTP-binding elongation factor signature 122 131 4.0E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS01905 559b0c83a1820372993ec998d3b16373 609 PRINTS PR00315 GTP-binding elongation factor signature 86 97 4.0E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS00500 d7e4285081702d9bfde0db95ea6a4173 255 Pfam PF13614 AAA domain 1 177 1.3E-66 T 22-04-2016 IPR025669 AAA domain RMA_RS00500 d7e4285081702d9bfde0db95ea6a4173 255 Gene3D G3DSA:3.40.50.300 2 252 1.6E-69 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00500 d7e4285081702d9bfde0db95ea6a4173 255 SUPERFAMILY SSF52540 1 252 6.75E-66 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00500 d7e4285081702d9bfde0db95ea6a4173 255 PANTHER PTHR13696:SF52 1 255 5.0E-86 T 22-04-2016 RMA_RS00500 d7e4285081702d9bfde0db95ea6a4173 255 PANTHER PTHR13696 1 255 5.0E-86 T 22-04-2016 RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 312 326 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 Gene3D G3DSA:3.30.420.40 204 336 1.3E-29 T 22-04-2016 RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 SUPERFAMILY SSF53067 192 356 1.3E-41 T 22-04-2016 RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 Pfam PF00012 Hsp70 protein 21 575 2.7E-130 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 594 36.119 T 22-04-2016 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 PRINTS PR00301 70kDa heat shock protein signature 340 360 1.5E-36 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 PRINTS PR00301 70kDa heat shock protein signature 363 382 1.5E-36 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 PRINTS PR00301 70kDa heat shock protein signature 20 33 1.5E-36 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 PRINTS PR00301 70kDa heat shock protein signature 309 325 1.5E-36 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 PRINTS PR00301 70kDa heat shock protein signature 144 164 1.5E-36 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 PRINTS PR00301 70kDa heat shock protein signature 444 460 1.5E-36 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 Gene3D G3DSA:2.60.34.10 346 517 2.1E-53 T 22-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 Gene3D G3DSA:1.20.1270.10 518 572 1.4E-4 T 22-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 PANTHER PTHR19375 19 549 1.1E-157 T 22-04-2016 RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 197 210 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 SUPERFAMILY SSF100934 483 592 1.43E-14 T 22-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 Gene3D G3DSA:3.30.420.40 20 83 3.5E-47 T 22-04-2016 RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 Gene3D G3DSA:3.30.420.40 125 203 3.5E-47 T 22-04-2016 RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 SUPERFAMILY SSF100920 363 513 1.16E-46 T 22-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RMA_RS01430 e9faf16433070ba3213a4c0eb5144648 595 SUPERFAMILY SSF53067 20 189 9.07E-38 T 22-04-2016 RMA_RS06650 92131c070f38245640379399f5d50b85 878 Gene3D G3DSA:3.20.19.10 623 875 1.1E-77 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RMA_RS06650 92131c070f38245640379399f5d50b85 878 PANTHER PTHR11670:SF1 407 697 0.0 T 22-04-2016 RMA_RS06650 92131c070f38245640379399f5d50b85 878 PANTHER PTHR11670:SF1 736 878 0.0 T 22-04-2016 RMA_RS06650 92131c070f38245640379399f5d50b85 878 PANTHER PTHR11670:SF1 7 386 0.0 T 22-04-2016 RMA_RS06650 92131c070f38245640379399f5d50b85 878 Gene3D G3DSA:3.30.499.10 361 565 3.6E-62 T 22-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 Gene3D G3DSA:3.40.1060.10 243 360 6.1E-38 T 22-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 PRINTS PR00415 Aconitase family signature 365 379 5.0E-39 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 PRINTS PR00415 Aconitase family signature 484 497 5.0E-39 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 PRINTS PR00415 Aconitase family signature 272 285 5.0E-39 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 PRINTS PR00415 Aconitase family signature 286 299 5.0E-39 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 PRINTS PR00415 Aconitase family signature 143 156 5.0E-39 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 PRINTS PR00415 Aconitase family signature 167 175 5.0E-39 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 PRINTS PR00415 Aconitase family signature 422 433 5.0E-39 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 PRINTS PR00415 Aconitase family signature 210 225 5.0E-39 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 PRINTS PR00415 Aconitase family signature 196 209 5.0E-39 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 ProSitePatterns PS00450 Aconitase family signature 1. 418 434 - T 22-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 Pfam PF00694 Aconitase C-terminal domain 676 803 1.1E-44 T 22-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 Gene3D G3DSA:3.30.499.10 23 242 1.7E-74 T 22-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 PANTHER PTHR11670 407 697 0.0 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 PANTHER PTHR11670 736 878 0.0 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 PANTHER PTHR11670 7 386 0.0 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 22 875 0.0 T 22-04-2016 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 RMA_RS06650 92131c070f38245640379399f5d50b85 878 Pfam PF00330 Aconitase family (aconitate hydratase) 71 553 6.0E-186 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 ProSitePatterns PS01244 Aconitase family signature 2. 484 497 - T 22-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 SUPERFAMILY SSF53732 6 613 4.05E-218 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RMA_RS06650 92131c070f38245640379399f5d50b85 878 SUPERFAMILY SSF52016 617 875 7.46E-81 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RMA_RS04975 50c3cab58dc925678d4f5f430f058879 456 SUPERFAMILY SSF54631 146 280 1.12E-20 T 22-04-2016 RMA_RS04975 50c3cab58dc925678d4f5f430f058879 456 Pfam PF01769 Divalent cation transporter 327 448 2.5E-23 T 22-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 RMA_RS04975 50c3cab58dc925678d4f5f430f058879 456 PANTHER PTHR41394 18 455 8.6E-34 T 22-04-2016 RMA_RS04975 50c3cab58dc925678d4f5f430f058879 456 SUPERFAMILY SSF158791 20 144 1.05E-17 T 22-04-2016 RMA_RS04975 50c3cab58dc925678d4f5f430f058879 456 Pfam PF03448 MgtE intracellular N domain 44 145 6.2E-13 T 22-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain RMA_RS04975 50c3cab58dc925678d4f5f430f058879 456 TIGRFAM TIGR00400 mgtE: magnesium transporter 20 455 4.1E-85 T 22-04-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 RMA_RS04975 50c3cab58dc925678d4f5f430f058879 456 Gene3D G3DSA:1.10.357.20 285 455 1.1E-50 T 22-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 RMA_RS04975 50c3cab58dc925678d4f5f430f058879 456 Gene3D G3DSA:1.25.60.10 20 137 1.4E-16 T 22-04-2016 RMA_RS04975 50c3cab58dc925678d4f5f430f058879 456 Pfam PF00571 CBS domain 147 201 1.0E-4 T 22-04-2016 IPR000644 CBS domain RMA_RS04975 50c3cab58dc925678d4f5f430f058879 456 Pfam PF00571 CBS domain 208 261 6.9E-6 T 22-04-2016 IPR000644 CBS domain RMA_RS04975 50c3cab58dc925678d4f5f430f058879 456 SUPERFAMILY SSF161093 284 455 5.23E-46 T 22-04-2016 RMA_RS04975 50c3cab58dc925678d4f5f430f058879 456 Gene3D G3DSA:3.10.580.10 142 267 1.1E-15 T 22-04-2016 RMA_RS04975 50c3cab58dc925678d4f5f430f058879 456 SMART SM00924 44 147 4.7E-17 T 22-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain RMA_RS02225 e6a9504107806dd57fb14ff62c313a31 212 SUPERFAMILY SSF51261 25 210 2.77E-29 T 22-04-2016 IPR011055 Duplicated hybrid motif RMA_RS02225 e6a9504107806dd57fb14ff62c313a31 212 Gene3D G3DSA:2.70.70.10 89 211 5.4E-24 T 22-04-2016 RMA_RS02225 e6a9504107806dd57fb14ff62c313a31 212 Pfam PF01551 Peptidase family M23 118 206 3.8E-17 T 22-04-2016 IPR016047 Peptidase M23 RMA_RS02225 e6a9504107806dd57fb14ff62c313a31 212 PANTHER PTHR21666 66 210 2.0E-13 T 22-04-2016 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 PANTHER PTHR10046:SF43 6 776 0.0 T 22-04-2016 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 6 203 3.2E-26 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 570 772 7.7E-94 T 22-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 703 722 6.6E-50 T 22-04-2016 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 356 375 6.6E-50 T 22-04-2016 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 673 692 6.6E-50 T 22-04-2016 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 595 611 6.6E-50 T 22-04-2016 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 726 744 6.6E-50 T 22-04-2016 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 PANTHER PTHR10046 6 776 0.0 T 22-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 SUPERFAMILY SSF52540 313 586 2.26E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 SMART SM00464 5 205 4.2E-55 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 PIRSF PIRSF001174 1 775 3.6E-295 T 22-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 Gene3D G3DSA:1.10.8.60 491 584 2.1E-29 T 22-04-2016 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 352 489 7.4E-20 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 SMART SM00382 348 492 5.8E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 Gene3D G3DSA:3.40.50.300 314 489 2.9E-32 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 SUPERFAMILY SSF54211 595 770 8.72E-55 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 676 684 - T 22-04-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 Hamap MF_01973 Lon protease [lon]. 6 772 66.717 T 22-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 Gene3D G3DSA:3.30.230.10 589 771 4.4E-71 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 TIGRFAM TIGR00763 lon: endopeptidase La 7 771 6.1E-266 T 22-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RMA_RS03405 43c92cf79f4bd947baef9218d9be0d0b 778 SUPERFAMILY SSF88697 5 204 8.2E-23 T 22-04-2016 IPR015947 PUA-like domain RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PIRSF PIRSF000350 1 457 4.0E-82 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 320 5.1E-67 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 Gene3D G3DSA:3.50.50.60 141 326 4.4E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 2.4E-65 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 143 2.4E-65 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 2.4E-65 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 258 272 2.4E-65 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.4E-65 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 37 52 2.4E-65 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 2.4E-65 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 300 307 2.4E-65 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 2.4E-65 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 Gene3D G3DSA:3.30.390.30 327 458 2.2E-43 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 SUPERFAMILY SSF55424 336 458 4.64E-37 T 22-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 273 1.6E-35 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 131 149 1.6E-35 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 1.6E-35 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.6E-35 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 285 307 1.6E-35 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 Gene3D G3DSA:3.50.50.60 2 140 6.2E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 3 459 1.3E-171 T 22-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 38 48 - T 22-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 340 448 1.2E-33 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 SUPERFAMILY SSF51905 1 366 1.57E-57 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PANTHER PTHR22912 1 452 5.1E-204 T 22-04-2016 RMA_RS06680 76af6ce3fb7785fb601b1de6dcb3ce3b 459 PANTHER PTHR22912:SF125 1 452 5.1E-204 T 22-04-2016 RMA_RS04385 f7c3509b75e89f62e2a63bb97fb124a4 646 PANTHER PTHR10804 1 163 4.1E-233 T 22-04-2016 RMA_RS04385 f7c3509b75e89f62e2a63bb97fb124a4 646 PANTHER PTHR10804 316 362 4.1E-233 T 22-04-2016 RMA_RS04385 f7c3509b75e89f62e2a63bb97fb124a4 646 PANTHER PTHR10804 389 639 4.1E-233 T 22-04-2016 RMA_RS04385 f7c3509b75e89f62e2a63bb97fb124a4 646 Gene3D G3DSA:3.90.230.10 334 608 6.2E-62 T 22-04-2016 IPR000994 Peptidase M24, structural domain RMA_RS04385 f7c3509b75e89f62e2a63bb97fb124a4 646 SUPERFAMILY SSF55920 391 606 1.96E-52 T 22-04-2016 IPR000994 Peptidase M24, structural domain RMA_RS04385 f7c3509b75e89f62e2a63bb97fb124a4 646 Pfam PF01321 Creatinase/Prolidase N-terminal domain 5 118 2.6E-12 T 22-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 RMA_RS04385 f7c3509b75e89f62e2a63bb97fb124a4 646 SUPERFAMILY SSF53092 9 125 1.92E-13 T 22-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal RMA_RS04385 f7c3509b75e89f62e2a63bb97fb124a4 646 Pfam PF16189 Creatinase/Prolidase N-terminal domain 133 340 1.1E-31 T 22-04-2016 RMA_RS04385 f7c3509b75e89f62e2a63bb97fb124a4 646 Pfam PF00557 Metallopeptidase family M24 391 578 9.0E-45 T 22-04-2016 IPR000994 Peptidase M24, structural domain RMA_RS04385 f7c3509b75e89f62e2a63bb97fb124a4 646 Gene3D G3DSA:3.40.350.10 3 121 3.1E-18 T 22-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RMA_RS04385 f7c3509b75e89f62e2a63bb97fb124a4 646 PANTHER PTHR10804:SF105 1 163 4.1E-233 T 22-04-2016 RMA_RS04385 f7c3509b75e89f62e2a63bb97fb124a4 646 PANTHER PTHR10804:SF105 316 362 4.1E-233 T 22-04-2016 RMA_RS04385 f7c3509b75e89f62e2a63bb97fb124a4 646 PANTHER PTHR10804:SF105 389 639 4.1E-233 T 22-04-2016 RMA_RS04385 f7c3509b75e89f62e2a63bb97fb124a4 646 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 254 300 2.6E-20 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS04385 f7c3509b75e89f62e2a63bb97fb124a4 646 Pfam PF16188 C-terminal region of peptidase_M24 582 637 6.6E-14 T 22-04-2016 IPR032416 Peptidase M24, C-terminal domain RMA_RS02275 aeffb540aeb9ca01c5e1d979f3687f94 102 SUPERFAMILY SSF52540 1 93 1.43E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02275 aeffb540aeb9ca01c5e1d979f3687f94 102 PANTHER PTHR19211:SF38 1 102 4.8E-34 T 22-04-2016 RMA_RS02275 aeffb540aeb9ca01c5e1d979f3687f94 102 Gene3D G3DSA:3.40.50.300 3 100 1.1E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02275 aeffb540aeb9ca01c5e1d979f3687f94 102 PANTHER PTHR19211 1 102 4.8E-34 T 22-04-2016 RMA_RS02275 aeffb540aeb9ca01c5e1d979f3687f94 102 Pfam PF00005 ABC transporter 18 89 6.5E-9 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS04225 3b2570467e20bed3a0178cdd790afc18 173 SUPERFAMILY SSF100950 1 171 1.95E-39 T 22-04-2016 RMA_RS04225 3b2570467e20bed3a0178cdd790afc18 173 PANTHER PTHR23407 1 172 1.9E-19 T 22-04-2016 RMA_RS04225 3b2570467e20bed3a0178cdd790afc18 173 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 3 171 2.5E-32 T 22-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RMA_RS04225 3b2570467e20bed3a0178cdd790afc18 173 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 3 171 1.5E-31 T 22-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RMA_RS04225 3b2570467e20bed3a0178cdd790afc18 173 Gene3D G3DSA:3.40.50.10420 1 172 1.9E-31 T 22-04-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain RMA_RS04225 3b2570467e20bed3a0178cdd790afc18 173 PIRSF PIRSF006806 1 173 3.7E-64 T 22-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RMA_RS04225 3b2570467e20bed3a0178cdd790afc18 173 PANTHER PTHR23407:SF1 1 172 1.9E-19 T 22-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RMA_RS01250 d75d331a675fde6c2b35de880e09874c 400 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 399 6.3E-166 T 22-04-2016 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|UniPathway: UPA00868 RMA_RS01250 d75d331a675fde6c2b35de880e09874c 400 SUPERFAMILY SSF47005 116 154 6.41E-10 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RMA_RS01250 d75d331a675fde6c2b35de880e09874c 400 Gene3D G3DSA:4.10.320.10 117 159 3.2E-13 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RMA_RS01250 d75d331a675fde6c2b35de880e09874c 400 PANTHER PTHR23151 5 400 4.3E-205 T 22-04-2016 RMA_RS01250 d75d331a675fde6c2b35de880e09874c 400 SUPERFAMILY SSF52777 170 399 1.11E-86 T 22-04-2016 RMA_RS01250 d75d331a675fde6c2b35de880e09874c 400 Pfam PF02817 e3 binding domain 118 150 7.4E-12 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RMA_RS01250 d75d331a675fde6c2b35de880e09874c 400 Gene3D G3DSA:2.40.50.100 1 96 4.3E-26 T 22-04-2016 RMA_RS01250 d75d331a675fde6c2b35de880e09874c 400 PANTHER PTHR23151:SF47 5 400 4.3E-205 T 22-04-2016 RMA_RS01250 d75d331a675fde6c2b35de880e09874c 400 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RMA_RS01250 d75d331a675fde6c2b35de880e09874c 400 Gene3D G3DSA:3.30.559.10 165 398 1.2E-90 T 22-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain RMA_RS01250 d75d331a675fde6c2b35de880e09874c 400 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 170 398 1.5E-81 T 22-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 RMA_RS01250 d75d331a675fde6c2b35de880e09874c 400 SUPERFAMILY SSF51230 1 91 1.11E-23 T 22-04-2016 IPR011053 Single hybrid motif RMA_RS01250 d75d331a675fde6c2b35de880e09874c 400 Pfam PF00364 Biotin-requiring enzyme 4 76 1.3E-17 T 22-04-2016 IPR000089 Biotin/lipoyl attachment RMA_RS01715 7b6867410026d22839bcf9932497516b 155 PANTHER PTHR11545 2 145 4.4E-58 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RMA_RS01715 7b6867410026d22839bcf9932497516b 155 SUPERFAMILY SSF52161 4 147 6.15E-51 T 22-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 RMA_RS01715 7b6867410026d22839bcf9932497516b 155 PIRSF PIRSF002181 1 155 4.1E-45 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RMA_RS01715 7b6867410026d22839bcf9932497516b 155 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 145 26.459 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RMA_RS01715 7b6867410026d22839bcf9932497516b 155 Pfam PF00572 Ribosomal protein L13 14 141 4.7E-48 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RMA_RS01715 7b6867410026d22839bcf9932497516b 155 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 145 3.7E-59 T 22-04-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 RMA_RS01715 7b6867410026d22839bcf9932497516b 155 Gene3D G3DSA:3.90.1180.10 3 145 3.0E-55 T 22-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 RMA_RS01715 7b6867410026d22839bcf9932497516b 155 ProSitePatterns PS00783 Ribosomal protein L13 signature. 109 131 - T 22-04-2016 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 RMA_RS07640 361fb2db29ec71ba9b62d8aec7350606 275 Pfam PF02384 N-6 DNA Methylase 75 266 1.1E-58 T 22-04-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 RMA_RS07640 361fb2db29ec71ba9b62d8aec7350606 275 PANTHER PTHR30408:SF4 71 275 1.2E-59 T 22-04-2016 RMA_RS07640 361fb2db29ec71ba9b62d8aec7350606 275 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 197 203 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RMA_RS07640 361fb2db29ec71ba9b62d8aec7350606 275 SUPERFAMILY SSF53335 10 265 1.14E-73 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS07640 361fb2db29ec71ba9b62d8aec7350606 275 Gene3D G3DSA:3.40.50.150 100 267 1.1E-29 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS07640 361fb2db29ec71ba9b62d8aec7350606 275 PANTHER PTHR30408 71 275 1.2E-59 T 22-04-2016 RMA_RS07640 361fb2db29ec71ba9b62d8aec7350606 275 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 194 206 6.0E-13 T 22-04-2016 RMA_RS07640 361fb2db29ec71ba9b62d8aec7350606 275 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 98 114 6.0E-13 T 22-04-2016 RMA_RS07640 361fb2db29ec71ba9b62d8aec7350606 275 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 122 136 6.0E-13 T 22-04-2016 RMA_RS06755 2d1d976beeaf3e7bd77979b5fa8907e5 79 SUPERFAMILY SSF82657 2 78 6.41E-19 T 22-04-2016 IPR002634 BolA protein RMA_RS06755 2d1d976beeaf3e7bd77979b5fa8907e5 79 Gene3D G3DSA:3.30.70.1500 2 73 2.4E-17 T 22-04-2016 RMA_RS06755 2d1d976beeaf3e7bd77979b5fa8907e5 79 Pfam PF01722 BolA-like protein 27 75 5.3E-12 T 22-04-2016 IPR002634 BolA protein RMA_RS06755 2d1d976beeaf3e7bd77979b5fa8907e5 79 PIRSF PIRSF003113 1 79 1.7E-18 T 22-04-2016 IPR002634 BolA protein RMA_RS01325 02bd2ac722973fac1dda1115c3326fc1 283 Pfam PF00510 Cytochrome c oxidase subunit III 17 283 2.9E-90 T 22-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RMA_RS01325 02bd2ac722973fac1dda1115c3326fc1 283 PANTHER PTHR11403 10 283 3.0E-139 T 22-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 RMA_RS01325 02bd2ac722973fac1dda1115c3326fc1 283 PANTHER PTHR11403:SF7 10 283 3.0E-139 T 22-04-2016 RMA_RS01325 02bd2ac722973fac1dda1115c3326fc1 283 Gene3D G3DSA:1.20.120.80 84 282 1.2E-69 T 22-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 RMA_RS01325 02bd2ac722973fac1dda1115c3326fc1 283 SUPERFAMILY SSF81452 14 282 4.6E-91 T 22-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RMA_RS01325 02bd2ac722973fac1dda1115c3326fc1 283 Gene3D G3DSA:1.10.287.70 15 82 4.4E-24 T 22-04-2016 RMA_RS05780 c70137dc0f600c7a4ea96b4857ead9f1 248 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 31 46 - T 22-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RMA_RS05780 c70137dc0f600c7a4ea96b4857ead9f1 248 Gene3D G3DSA:3.40.50.150 20 244 1.0E-52 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS05780 c70137dc0f600c7a4ea96b4857ead9f1 248 SUPERFAMILY SSF53335 17 223 1.51E-42 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS05780 c70137dc0f600c7a4ea96b4857ead9f1 248 PANTHER PTHR10108:SF24 1 244 1.8E-109 T 22-04-2016 RMA_RS05780 c70137dc0f600c7a4ea96b4857ead9f1 248 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 20 246 3.5E-87 T 22-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RMA_RS05780 c70137dc0f600c7a4ea96b4857ead9f1 248 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 11 247 37.336 T 22-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RMA_RS05780 c70137dc0f600c7a4ea96b4857ead9f1 248 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 155 169 - T 22-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RMA_RS05780 c70137dc0f600c7a4ea96b4857ead9f1 248 PANTHER PTHR10108 1 244 1.8E-109 T 22-04-2016 RMA_RS05780 c70137dc0f600c7a4ea96b4857ead9f1 248 Pfam PF01209 ubiE/COQ5 methyltransferase family 16 246 9.7E-83 T 22-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RMA_RS03990 bc4fda8dfc500e09ae3dd4ae9f551811 364 Pfam PF13551 Winged helix-turn helix 11 72 2.5E-12 T 22-04-2016 RMA_RS03990 bc4fda8dfc500e09ae3dd4ae9f551811 364 SUPERFAMILY SSF53098 159 333 2.66E-34 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS03990 bc4fda8dfc500e09ae3dd4ae9f551811 364 PANTHER PTHR24559 186 284 7.6E-13 T 22-04-2016 RMA_RS03990 bc4fda8dfc500e09ae3dd4ae9f551811 364 Gene3D G3DSA:3.30.420.10 158 318 5.4E-27 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS03990 bc4fda8dfc500e09ae3dd4ae9f551811 364 Pfam PF00665 Integrase core domain 160 283 1.2E-23 T 22-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RMA_RS03990 bc4fda8dfc500e09ae3dd4ae9f551811 364 SUPERFAMILY SSF46689 15 112 4.66E-5 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 RMA_RS02855 bc4fda8dfc500e09ae3dd4ae9f551811 364 Pfam PF13551 Winged helix-turn helix 11 72 2.5E-12 T 22-04-2016 RMA_RS02855 bc4fda8dfc500e09ae3dd4ae9f551811 364 SUPERFAMILY SSF53098 159 333 2.66E-34 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS02855 bc4fda8dfc500e09ae3dd4ae9f551811 364 PANTHER PTHR24559 186 284 7.6E-13 T 22-04-2016 RMA_RS02855 bc4fda8dfc500e09ae3dd4ae9f551811 364 Gene3D G3DSA:3.30.420.10 158 318 5.4E-27 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS02855 bc4fda8dfc500e09ae3dd4ae9f551811 364 Pfam PF00665 Integrase core domain 160 283 1.2E-23 T 22-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RMA_RS02855 bc4fda8dfc500e09ae3dd4ae9f551811 364 SUPERFAMILY SSF46689 15 112 4.66E-5 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 22-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 340 449 9.0E-39 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PANTHER PTHR22912:SF131 1 452 7.0E-284 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 SUPERFAMILY SSF55424 336 458 5.33E-43 T 22-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 Gene3D G3DSA:3.30.390.30 328 456 1.5E-49 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 Gene3D G3DSA:3.50.50.60 2 133 1.4E-39 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 3 459 8.3E-168 T 22-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 321 1.9E-67 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 5.0E-36 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 131 149 5.0E-36 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 5.0E-36 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 286 308 5.0E-36 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 273 5.0E-36 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 8.3E-77 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 258 272 8.3E-77 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 8.3E-77 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 143 8.3E-77 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 8.3E-77 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 301 308 8.3E-77 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 8.3E-77 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 8.3E-77 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 8.3E-77 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 Gene3D G3DSA:3.50.50.60 134 327 4.5E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 SUPERFAMILY SSF51905 1 315 2.29E-62 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PANTHER PTHR22912 1 452 7.0E-284 T 22-04-2016 RMA_RS04220 176f6a7c1c2b814547ddeffa8c7f85ab 459 PIRSF PIRSF000350 1 458 1.4E-89 T 22-04-2016 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 Pfam PF01168 Alanine racemase, N-terminal domain 8 223 6.1E-48 T 22-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 SUPERFAMILY SSF51419 8 226 1.39E-53 T 22-04-2016 IPR029066 PLP-binding barrel RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 PRINTS PR00992 Alanine racemase signature 261 276 2.4E-29 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 PRINTS PR00992 Alanine racemase signature 336 349 2.4E-29 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 PRINTS PR00992 Alanine racemase signature 124 136 2.4E-29 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 PRINTS PR00992 Alanine racemase signature 26 42 2.4E-29 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 PRINTS PR00992 Alanine racemase signature 158 169 2.4E-29 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 PRINTS PR00992 Alanine racemase signature 244 259 2.4E-29 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 PRINTS PR00992 Alanine racemase signature 282 299 2.4E-29 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 Hamap MF_01201 Alanine racemase. 1 354 29.248 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 TIGRFAM TIGR00492 alr: alanine racemase 5 354 4.6E-77 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 Gene3D G3DSA:3.20.20.10 10 212 2.2E-66 T 22-04-2016 IPR029066 PLP-binding barrel RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 Pfam PF00842 Alanine racemase, C-terminal domain 229 353 3.1E-34 T 22-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 PANTHER PTHR30511 1 354 2.7E-98 T 22-04-2016 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 Gene3D G3DSA:2.40.37.10 213 354 4.7E-52 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 SMART SM01005 228 354 2.6E-53 T 22-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 22-04-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 SUPERFAMILY SSF50621 226 354 3.07E-40 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RMA_RS00730 d7a6727189d41181cc9c4e8aea53d801 355 PANTHER PTHR30511:SF0 1 354 2.7E-98 T 22-04-2016 RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 Pfam PF00549 CoA-ligase 151 272 4.0E-21 T 22-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 237 250 - T 22-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 PIRSF PIRSF001553 1 291 6.2E-132 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 Gene3D G3DSA:3.40.50.261 120 288 2.8E-77 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 Gene3D G3DSA:3.40.50.720 3 119 2.2E-57 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 2.1E-40 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 PRINTS PR01798 Succinyl-CoA synthase signature 241 258 2.1E-40 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 2.1E-40 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 2.1E-40 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 SUPERFAMILY SSF51735 1 122 2.55E-43 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 SUPERFAMILY SSF52210 123 288 1.14E-54 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 Pfam PF02629 CoA binding domain 6 99 1.1E-30 T 22-04-2016 IPR003781 CoA-binding GO:0048037 RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 PANTHER PTHR11117 1 291 1.0E-198 T 22-04-2016 RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 SMART SM00881 4 100 4.3E-33 T 22-04-2016 IPR003781 CoA-binding GO:0048037 RMA_RS03255 4b4b8407b8a513a5940d27042db0d496 292 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 289 6.6E-147 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RMA_RS06535 0450a9f73e1a5000b30dea5a473c2e35 1181 SMART SM00481 6 73 9.1E-22 T 22-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 RMA_RS06535 0450a9f73e1a5000b30dea5a473c2e35 1181 Gene3D G3DSA:3.20.20.140 10 249 5.4E-15 T 22-04-2016 RMA_RS06535 0450a9f73e1a5000b30dea5a473c2e35 1181 Gene3D G3DSA:2.40.50.140 1023 1104 5.9E-4 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS06535 0450a9f73e1a5000b30dea5a473c2e35 1181 Pfam PF02811 PHP domain 7 170 3.1E-26 T 22-04-2016 IPR004013 PHP domain GO:0003824 RMA_RS06535 0450a9f73e1a5000b30dea5a473c2e35 1181 PANTHER PTHR32294:SF0 1 826 0.0 T 22-04-2016 RMA_RS06535 0450a9f73e1a5000b30dea5a473c2e35 1181 PANTHER PTHR32294:SF0 862 1169 0.0 T 22-04-2016 RMA_RS06535 0450a9f73e1a5000b30dea5a473c2e35 1181 PANTHER PTHR32294 1 826 0.0 T 22-04-2016 RMA_RS06535 0450a9f73e1a5000b30dea5a473c2e35 1181 PANTHER PTHR32294 862 1169 0.0 T 22-04-2016 RMA_RS06535 0450a9f73e1a5000b30dea5a473c2e35 1181 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 5 1061 0.0 T 22-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06535 0450a9f73e1a5000b30dea5a473c2e35 1181 Pfam PF14579 Helix-hairpin-helix motif 807 931 1.4E-17 T 22-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06535 0450a9f73e1a5000b30dea5a473c2e35 1181 SUPERFAMILY SSF89550 11 257 1.02E-11 T 22-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 RMA_RS06535 0450a9f73e1a5000b30dea5a473c2e35 1181 Gene3D G3DSA:1.10.150.280 857 923 1.1E-4 T 22-04-2016 RMA_RS06535 0450a9f73e1a5000b30dea5a473c2e35 1181 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 289 734 1.2E-162 T 22-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06030 210d8630b51470a0bac59d99c09221b6 156 SUPERFAMILY SSF52833 3 154 1.21E-49 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS06030 210d8630b51470a0bac59d99c09221b6 156 PANTHER PTHR10681 3 151 2.0E-41 T 22-04-2016 RMA_RS06030 210d8630b51470a0bac59d99c09221b6 156 Pfam PF00578 AhpC/TSA family 6 133 4.8E-36 T 22-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 RMA_RS06030 210d8630b51470a0bac59d99c09221b6 156 Gene3D G3DSA:3.40.30.10 2 152 1.7E-46 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS06030 210d8630b51470a0bac59d99c09221b6 156 PIRSF PIRSF000239 1 156 9.2E-28 T 22-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 RMA_RS01975 d6cff1478e360ffcf82e9cc8c4420ff2 167 Gene3D G3DSA:2.60.40.790 62 164 1.1E-20 T 22-04-2016 IPR008978 HSP20-like chaperone RMA_RS01975 d6cff1478e360ffcf82e9cc8c4420ff2 167 PANTHER PTHR11527 61 167 5.8E-18 T 22-04-2016 IPR031107 Small heat shock protein HSP20 RMA_RS01975 d6cff1478e360ffcf82e9cc8c4420ff2 167 SUPERFAMILY SSF49764 57 165 2.88E-22 T 22-04-2016 IPR008978 HSP20-like chaperone RMA_RS01975 d6cff1478e360ffcf82e9cc8c4420ff2 167 Pfam PF00011 Hsp20/alpha crystallin family 72 166 5.6E-19 T 22-04-2016 IPR002068 Alpha crystallin/Hsp20 domain RMA_RS02110 ef25b1b76a83bda2d9c0461ad3f9a162 487 Pfam PF00361 Proton-conducting membrane transporter 134 427 2.0E-44 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RMA_RS02110 ef25b1b76a83bda2d9c0461ad3f9a162 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 244 270 1.7E-13 T 22-04-2016 RMA_RS02110 ef25b1b76a83bda2d9c0461ad3f9a162 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 422 441 1.7E-13 T 22-04-2016 RMA_RS02110 ef25b1b76a83bda2d9c0461ad3f9a162 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 81 106 1.7E-13 T 22-04-2016 RMA_RS02110 ef25b1b76a83bda2d9c0461ad3f9a162 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 222 243 1.7E-13 T 22-04-2016 RMA_RS02110 ef25b1b76a83bda2d9c0461ad3f9a162 487 PANTHER PTHR22773:SF46 1 480 5.4E-92 T 22-04-2016 RMA_RS02110 ef25b1b76a83bda2d9c0461ad3f9a162 487 PANTHER PTHR22773 1 480 5.4E-92 T 22-04-2016 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 696 0.0 T 22-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 Gene3D G3DSA:3.30.230.10 483 608 2.2E-41 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 SMART SM00838 606 693 1.0E-51 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 180 1.0E-34 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 Gene3D G3DSA:3.30.70.870 405 479 1.9E-37 T 22-04-2016 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 Gene3D G3DSA:3.40.50.300 4 284 4.2E-108 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 Pfam PF03144 Elongation factor Tu domain 2 323 389 1.8E-15 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 Hamap MF_00054_B Elongation factor G [fusA]. 6 697 109.207 T 22-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.3E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.3E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.3E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.3E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 PRINTS PR00315 GTP-binding elongation factor signature 130 139 1.3E-15 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 Gene3D G3DSA:3.30.70.240 609 694 6.1E-34 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 Pfam PF03764 Elongation factor G, domain IV 478 603 3.3E-39 T 22-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 SUPERFAMILY SSF54980 403 480 5.76E-24 T 22-04-2016 IPR009022 Elongation factor G, III-V domain RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 Gene3D G3DSA:2.40.30.10 306 404 5.8E-37 T 22-04-2016 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 Pfam PF00679 Elongation factor G C-terminus 607 692 2.4E-32 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 SMART SM00889 479 604 5.7E-60 T 22-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 SUPERFAMILY SSF54211 481 605 4.8E-38 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 Pfam PF14492 Elongation Factor G, domain II 403 476 3.0E-33 T 22-04-2016 IPR009022 Elongation factor G, III-V domain RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 SUPERFAMILY SSF54980 609 693 1.87E-30 T 22-04-2016 IPR009022 Elongation factor G, III-V domain RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 Pfam PF00009 Elongation factor Tu GTP binding domain 9 281 8.7E-71 T 22-04-2016 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 SUPERFAMILY SSF52540 6 281 1.29E-111 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 SUPERFAMILY SSF50447 264 403 3.28E-35 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 PANTHER PTHR23115:SF66 302 697 0.0 T 22-04-2016 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 PANTHER PTHR23115:SF66 254 282 0.0 T 22-04-2016 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 PANTHER PTHR23115:SF66 4 177 0.0 T 22-04-2016 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 PANTHER PTHR23115 302 697 0.0 T 22-04-2016 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 PANTHER PTHR23115 254 282 0.0 T 22-04-2016 RMA_RS00970 942163afeec908e8d0c69c1cfc4ddd4e 697 PANTHER PTHR23115 4 177 0.0 T 22-04-2016 RMA_RS02485 9a916e3d0be79e0d32e3cbabf5690ba8 200 PANTHER PTHR10681 1 196 2.8E-84 T 22-04-2016 RMA_RS02485 9a916e3d0be79e0d32e3cbabf5690ba8 200 Gene3D G3DSA:3.40.30.10 5 194 3.5E-68 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS02485 9a916e3d0be79e0d32e3cbabf5690ba8 200 Pfam PF00578 AhpC/TSA family 5 139 2.3E-34 T 22-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 RMA_RS02485 9a916e3d0be79e0d32e3cbabf5690ba8 200 PANTHER PTHR10681:SF22 1 196 2.8E-84 T 22-04-2016 RMA_RS02485 9a916e3d0be79e0d32e3cbabf5690ba8 200 PIRSF PIRSF000239 1 199 1.1E-58 T 22-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 RMA_RS02485 9a916e3d0be79e0d32e3cbabf5690ba8 200 SUPERFAMILY SSF52833 4 195 7.47E-62 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS02485 9a916e3d0be79e0d32e3cbabf5690ba8 200 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 194 1.2E-10 T 22-04-2016 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RMA_RS06505 bff69d6487b320e294d2b5c666edb4cb 111 Pfam PF02772 S-adenosylmethionine synthetase, central domain 1 107 4.9E-36 T 22-04-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RMA_RS06505 bff69d6487b320e294d2b5c666edb4cb 111 Gene3D G3DSA:3.30.300.10 7 107 4.4E-38 T 22-04-2016 RMA_RS06505 bff69d6487b320e294d2b5c666edb4cb 111 SUPERFAMILY SSF55973 1 107 1.53E-40 T 22-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RMA_RS06505 bff69d6487b320e294d2b5c666edb4cb 111 PANTHER PTHR11964 1 107 3.0E-45 T 22-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RMA_RS06550 694c14bec1945844de39b699d6665b14 432 Pfam PF07690 Major Facilitator Superfamily 21 328 2.1E-18 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RMA_RS06550 694c14bec1945844de39b699d6665b14 432 SUPERFAMILY SSF103473 15 424 1.31E-30 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS06550 694c14bec1945844de39b699d6665b14 432 Gene3D G3DSA:1.20.1250.20 17 210 3.2E-9 T 22-04-2016 RMA_RS06550 694c14bec1945844de39b699d6665b14 432 Gene3D G3DSA:1.20.1250.20 239 422 2.6E-11 T 22-04-2016 RMA_RS06550 694c14bec1945844de39b699d6665b14 432 PANTHER PTHR12778 21 424 2.6E-57 T 22-04-2016 RMA_RS01825 e05e4ec7c45987d4d67f0cac0b969819 295 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 18 292 7.9E-62 T 22-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS01825 e05e4ec7c45987d4d67f0cac0b969819 295 Gene3D G3DSA:3.30.465.10 82 219 6.0E-38 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RMA_RS01825 e05e4ec7c45987d4d67f0cac0b969819 295 Pfam PF01565 FAD binding domain 32 158 4.3E-17 T 22-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RMA_RS01825 e05e4ec7c45987d4d67f0cac0b969819 295 Gene3D G3DSA:3.30.43.10 8 79 2.0E-18 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RMA_RS01825 e05e4ec7c45987d4d67f0cac0b969819 295 SUPERFAMILY SSF56176 15 202 1.82E-43 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RMA_RS01825 e05e4ec7c45987d4d67f0cac0b969819 295 Gene3D G3DSA:3.90.78.10 220 293 1.7E-28 T 22-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS01825 e05e4ec7c45987d4d67f0cac0b969819 295 PANTHER PTHR21071 2 294 7.6E-102 T 22-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS01825 e05e4ec7c45987d4d67f0cac0b969819 295 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 195 290 5.3E-25 T 22-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS01825 e05e4ec7c45987d4d67f0cac0b969819 295 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 295 86.385 T 22-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS01825 e05e4ec7c45987d4d67f0cac0b969819 295 PANTHER PTHR21071:SF4 2 294 7.6E-102 T 22-04-2016 RMA_RS01825 e05e4ec7c45987d4d67f0cac0b969819 295 SUPERFAMILY SSF56194 189 293 1.01E-34 T 22-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS07065 0118bd0d2ecb297bda06e34cf6eb4acd 445 Gene3D G3DSA:3.10.50.40 151 215 7.5E-7 T 22-04-2016 RMA_RS07065 0118bd0d2ecb297bda06e34cf6eb4acd 445 PIRSF PIRSF003095 1 438 7.8E-113 T 22-04-2016 IPR005215 Trigger factor GO:0015031 RMA_RS07065 0118bd0d2ecb297bda06e34cf6eb4acd 445 SUPERFAMILY SSF102735 1 130 4.58E-32 T 22-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RMA_RS07065 0118bd0d2ecb297bda06e34cf6eb4acd 445 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 157 232 8.0E-10 T 22-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 RMA_RS07065 0118bd0d2ecb297bda06e34cf6eb4acd 445 Gene3D G3DSA:3.30.70.1050 1 118 1.8E-32 T 22-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RMA_RS07065 0118bd0d2ecb297bda06e34cf6eb4acd 445 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 261 415 6.4E-34 T 22-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RMA_RS07065 0118bd0d2ecb297bda06e34cf6eb4acd 445 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 3.8E-35 T 22-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RMA_RS07065 0118bd0d2ecb297bda06e34cf6eb4acd 445 PANTHER PTHR30560 1 434 7.2E-85 T 22-04-2016 RMA_RS07065 0118bd0d2ecb297bda06e34cf6eb4acd 445 TIGRFAM TIGR00115 tig: trigger factor 15 414 1.7E-118 T 22-04-2016 IPR005215 Trigger factor GO:0015031 RMA_RS07065 0118bd0d2ecb297bda06e34cf6eb4acd 445 Hamap MF_00303 Trigger factor [tig]. 1 422 19.864 T 22-04-2016 IPR005215 Trigger factor GO:0015031 RMA_RS07065 0118bd0d2ecb297bda06e34cf6eb4acd 445 SUPERFAMILY SSF54534 88 242 1.81E-27 T 22-04-2016 RMA_RS07065 0118bd0d2ecb297bda06e34cf6eb4acd 445 Gene3D G3DSA:1.10.3120.10 216 391 5.0E-43 T 22-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RMA_RS07065 0118bd0d2ecb297bda06e34cf6eb4acd 445 SUPERFAMILY SSF109998 249 434 7.06E-34 T 22-04-2016 IPR027304 Trigger factor/SurA domain RMA_RS00585 1b66141374a62dfdfcc1043bafa76db4 188 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 5 186 3.8E-47 T 22-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 RMA_RS00585 1b66141374a62dfdfcc1043bafa76db4 188 PANTHER PTHR11241:SF1 1 187 6.3E-70 T 22-04-2016 RMA_RS00585 1b66141374a62dfdfcc1043bafa76db4 188 Pfam PF00692 dUTPase 82 167 2.7E-4 T 22-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 RMA_RS00585 1b66141374a62dfdfcc1043bafa76db4 188 SUPERFAMILY SSF51283 2 186 9.95E-48 T 22-04-2016 IPR029054 dUTPase-like RMA_RS00585 1b66141374a62dfdfcc1043bafa76db4 188 PANTHER PTHR11241 1 187 6.3E-70 T 22-04-2016 RMA_RS00585 1b66141374a62dfdfcc1043bafa76db4 188 Gene3D G3DSA:2.70.40.10 3 186 1.6E-60 T 22-04-2016 IPR029054 dUTPase-like RMA_RS00585 1b66141374a62dfdfcc1043bafa76db4 188 Hamap MF_00146 Deoxycytidine triphosphate deaminase [dcd]. 2 188 27.14 T 22-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 RMA_RS03260 b44ddd6e8967239826efe24ed92e67d7 386 Pfam PF00549 CoA-ligase 262 381 6.9E-26 T 22-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RMA_RS03260 b44ddd6e8967239826efe24ed92e67d7 386 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 2.5E-181 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RMA_RS03260 b44ddd6e8967239826efe24ed92e67d7 386 Gene3D G3DSA:3.40.50.261 240 383 2.1E-65 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RMA_RS03260 b44ddd6e8967239826efe24ed92e67d7 386 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 281 - T 22-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RMA_RS03260 b44ddd6e8967239826efe24ed92e67d7 386 SUPERFAMILY SSF52210 239 384 2.62E-54 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RMA_RS03260 b44ddd6e8967239826efe24ed92e67d7 386 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 42.863 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RMA_RS03260 b44ddd6e8967239826efe24ed92e67d7 386 SUPERFAMILY SSF56059 1 238 1.32E-79 T 22-04-2016 RMA_RS03260 b44ddd6e8967239826efe24ed92e67d7 386 PIRSF PIRSF001554 1 386 5.6E-153 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RMA_RS03260 b44ddd6e8967239826efe24ed92e67d7 386 Gene3D G3DSA:3.30.470.20 96 239 3.1E-59 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RMA_RS03260 b44ddd6e8967239826efe24ed92e67d7 386 PANTHER PTHR11815:SF1 1 386 1.1E-223 T 22-04-2016 RMA_RS03260 b44ddd6e8967239826efe24ed92e67d7 386 Pfam PF08442 ATP-grasp domain 2 202 1.4E-85 T 22-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RMA_RS03260 b44ddd6e8967239826efe24ed92e67d7 386 PANTHER PTHR11815 1 386 1.1E-223 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RMA_RS03260 b44ddd6e8967239826efe24ed92e67d7 386 Gene3D G3DSA:3.30.1490.20 22 95 1.7E-32 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RMA_RS07375 fb267476b762f944305e247abb6003cd 423 Gene3D G3DSA:1.20.1250.20 228 408 9.7E-14 T 22-04-2016 RMA_RS07375 fb267476b762f944305e247abb6003cd 423 Gene3D G3DSA:1.20.1250.20 10 212 1.5E-17 T 22-04-2016 RMA_RS07375 fb267476b762f944305e247abb6003cd 423 PANTHER PTHR23508 7 420 3.2E-103 T 22-04-2016 RMA_RS07375 fb267476b762f944305e247abb6003cd 423 PANTHER PTHR23508:SF1 7 420 3.2E-103 T 22-04-2016 RMA_RS07375 fb267476b762f944305e247abb6003cd 423 Pfam PF07690 Major Facilitator Superfamily 16 367 1.5E-22 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RMA_RS07375 fb267476b762f944305e247abb6003cd 423 SUPERFAMILY SSF103473 5 410 2.22E-52 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS02680 e1e979fdaebdec27dec5dc5310af76ab 123 PANTHER PTHR11058 1 123 1.1E-57 T 22-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 RMA_RS02680 e1e979fdaebdec27dec5dc5310af76ab 123 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 7 123 18.923 T 22-04-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 RMA_RS02680 e1e979fdaebdec27dec5dc5310af76ab 123 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 27 123 6.4E-39 T 22-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 RMA_RS02680 e1e979fdaebdec27dec5dc5310af76ab 123 PANTHER PTHR11058:SF10 1 123 1.1E-57 T 22-04-2016 RMA_RS06880 342217e2da1a15d3efb2245f329c0481 524 Pfam PF13624 SurA N-terminal domain 1 158 9.4E-22 T 22-04-2016 RMA_RS06880 342217e2da1a15d3efb2245f329c0481 524 Gene3D G3DSA:3.10.50.40 294 392 7.5E-5 T 22-04-2016 RMA_RS06880 342217e2da1a15d3efb2245f329c0481 524 Pfam PF13145 PPIC-type PPIASE domain 249 383 5.4E-13 T 22-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 RMA_RS06880 342217e2da1a15d3efb2245f329c0481 524 SUPERFAMILY SSF109998 51 171 3.69E-5 T 22-04-2016 IPR027304 Trigger factor/SurA domain RMA_RS06880 342217e2da1a15d3efb2245f329c0481 524 SUPERFAMILY SSF109998 208 244 3.69E-5 T 22-04-2016 IPR027304 Trigger factor/SurA domain RMA_RS02555 c5d9938d3c2caa480d74cdb60633eaa5 255 SUPERFAMILY SSF53474 17 235 6.97E-37 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS02555 c5d9938d3c2caa480d74cdb60633eaa5 255 PANTHER PTHR16138 4 255 5.3E-108 T 22-04-2016 RMA_RS02555 c5d9938d3c2caa480d74cdb60633eaa5 255 Pfam PF00561 alpha/beta hydrolase fold 26 145 8.3E-15 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RMA_RS02555 c5d9938d3c2caa480d74cdb60633eaa5 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 7.92E-7 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RMA_RS02555 c5d9938d3c2caa480d74cdb60633eaa5 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 7.92E-7 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RMA_RS02555 c5d9938d3c2caa480d74cdb60633eaa5 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 7.92E-7 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RMA_RS02555 c5d9938d3c2caa480d74cdb60633eaa5 255 Gene3D G3DSA:3.40.50.1820 178 236 2.8E-33 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS02555 c5d9938d3c2caa480d74cdb60633eaa5 255 Gene3D G3DSA:3.40.50.1820 22 130 2.8E-33 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 SUPERFAMILY SSF81923 4 157 8.89E-33 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 SUPERFAMILY SSF52540 158 536 3.86E-98 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 674 692 1.3E-41 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 707 721 1.3E-41 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 600 618 1.3E-41 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 645 663 1.3E-41 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 320 5.8E-15 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 SMART SM00382 596 739 1.5E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 SMART SM00382 199 343 6.1E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 SUPERFAMILY SSF52540 545 849 6.7E-78 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 765 845 1.4E-26 T 22-04-2016 IPR019489 Clp ATPase, C-terminal RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 851 0.0 T 22-04-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 Gene3D G3DSA:3.40.50.300 160 343 6.5E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 145 2.1E-6 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 18 68 3.3E-9 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 Gene3D G3DSA:1.10.1780.10 1 149 1.1E-37 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 Pfam PF07724 AAA domain (Cdc48 subfamily) 595 759 1.6E-53 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 Gene3D G3DSA:1.10.8.60 344 428 1.2E-36 T 22-04-2016 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 Gene3D G3DSA:3.40.50.300 551 774 3.0E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 630 648 - T 22-04-2016 IPR028299 ClpA/B, conserved site 2 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 SMART SM01086 765 855 1.4E-35 T 22-04-2016 IPR019489 Clp ATPase, C-terminal RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 PANTHER PTHR11638:SF18 1 851 0.0 T 22-04-2016 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 295 307 - T 22-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 Gene3D G3DSA:1.10.8.60 775 852 1.8E-30 T 22-04-2016 RMA_RS00345 72ad4b419694cd01cdbf374a83e99408 858 PANTHER PTHR11638 1 851 0.0 T 22-04-2016 RMA_RS03975 1e8473335d4994ad28ab724bc464437b 94 SUPERFAMILY SSF46689 5 90 5.55E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 RMA_RS03975 1e8473335d4994ad28ab724bc464437b 94 PANTHER PTHR33215 2 85 3.0E-14 T 22-04-2016 RMA_RS03975 1e8473335d4994ad28ab724bc464437b 94 Gene3D G3DSA:1.10.10.60 11 86 4.4E-19 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 RMA_RS03975 1e8473335d4994ad28ab724bc464437b 94 Pfam PF01527 Transposase 5 73 1.5E-14 T 22-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RMA_RS03975 1e8473335d4994ad28ab724bc464437b 94 PANTHER PTHR33215:SF1 2 85 3.0E-14 T 22-04-2016 RMA_RS07140 94ce4da286ba5a8d2e6620028284eb39 61 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 3 46 2.6E-9 T 22-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RMA_RS07140 94ce4da286ba5a8d2e6620028284eb39 61 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 2 34 4.8E-12 T 22-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RMA_RS07140 94ce4da286ba5a8d2e6620028284eb39 61 SUPERFAMILY SSF143120 3 40 1.96E-7 T 22-04-2016 RMA_RS07140 94ce4da286ba5a8d2e6620028284eb39 61 Gene3D G3DSA:3.40.1620.10 2 29 1.3E-10 T 22-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RMA_RS06655 1a69eac77f8113707b50ef38c9793ed5 104 SUPERFAMILY SSF51344 4 87 2.22E-17 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RMA_RS06655 1a69eac77f8113707b50ef38c9793ed5 104 PANTHER PTHR13822 1 97 7.0E-14 T 22-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RMA_RS06655 1a69eac77f8113707b50ef38c9793ed5 104 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 20 92 1.0E-33 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RMA_RS06655 1a69eac77f8113707b50ef38c9793ed5 104 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 104 12.409 T 22-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RMA_RS06655 1a69eac77f8113707b50ef38c9793ed5 104 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 7 86 1.5E-18 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RMA_RS06655 1a69eac77f8113707b50ef38c9793ed5 104 Gene3D G3DSA:2.60.15.10 1 91 3.0E-21 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RMA_RS06655 1a69eac77f8113707b50ef38c9793ed5 104 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 99 3.0E-19 T 22-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RMA_RS05950 3026d93bbbd2746286cdd6f4b4f57df7 576 PANTHER PTHR24221 6 574 1.0E-181 T 22-04-2016 RMA_RS05950 3026d93bbbd2746286cdd6f4b4f57df7 576 SUPERFAMILY SSF90123 8 319 3.27E-60 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RMA_RS05950 3026d93bbbd2746286cdd6f4b4f57df7 576 SUPERFAMILY SSF52540 333 573 1.38E-78 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05950 3026d93bbbd2746286cdd6f4b4f57df7 576 Pfam PF00005 ABC transporter 355 502 6.7E-33 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS05950 3026d93bbbd2746286cdd6f4b4f57df7 576 ProSitePatterns PS00211 ABC transporters family signature. 475 489 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS05950 3026d93bbbd2746286cdd6f4b4f57df7 576 Pfam PF00664 ABC transporter transmembrane region 20 285 3.6E-43 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RMA_RS05950 3026d93bbbd2746286cdd6f4b4f57df7 576 SMART SM00382 363 549 2.0E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS05950 3026d93bbbd2746286cdd6f4b4f57df7 576 Gene3D G3DSA:1.20.1560.10 8 319 5.0E-62 T 22-04-2016 RMA_RS05950 3026d93bbbd2746286cdd6f4b4f57df7 576 Gene3D G3DSA:3.40.50.300 336 567 2.3E-73 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03555 28e63938e802032edbb2e571ca8526f1 320 SMART SM00116 208 256 8.6E-4 T 22-04-2016 IPR000644 CBS domain RMA_RS03555 28e63938e802032edbb2e571ca8526f1 320 SMART SM00116 271 319 1.4 T 22-04-2016 IPR000644 CBS domain RMA_RS03555 28e63938e802032edbb2e571ca8526f1 320 Gene3D G3DSA:3.40.50.10490 10 191 1.1E-43 T 22-04-2016 RMA_RS03555 28e63938e802032edbb2e571ca8526f1 320 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 45 310 1.8E-86 T 22-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RMA_RS03555 28e63938e802032edbb2e571ca8526f1 320 Gene3D G3DSA:3.10.580.10 195 315 2.3E-36 T 22-04-2016 RMA_RS03555 28e63938e802032edbb2e571ca8526f1 320 Pfam PF01380 SIS domain 41 169 4.5E-26 T 22-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RMA_RS03555 28e63938e802032edbb2e571ca8526f1 320 PIRSF PIRSF004692 1 320 5.9E-123 T 22-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RMA_RS03555 28e63938e802032edbb2e571ca8526f1 320 Pfam PF00571 CBS domain 265 315 6.4E-11 T 22-04-2016 IPR000644 CBS domain RMA_RS03555 28e63938e802032edbb2e571ca8526f1 320 Pfam PF00571 CBS domain 202 256 7.0E-7 T 22-04-2016 IPR000644 CBS domain RMA_RS03555 28e63938e802032edbb2e571ca8526f1 320 SUPERFAMILY SSF53697 10 319 5.78E-61 T 22-04-2016 RMA_RS03555 28e63938e802032edbb2e571ca8526f1 320 PANTHER PTHR11911 176 315 7.5E-34 T 22-04-2016 RMA_RS02900 2b80542734937153e62278a44718795b 103 ProSitePatterns PS00893 Nudix box signature. 33 54 - T 22-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RMA_RS02900 2b80542734937153e62278a44718795b 103 Gene3D G3DSA:3.90.79.10 1 101 2.5E-20 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RMA_RS02900 2b80542734937153e62278a44718795b 103 SUPERFAMILY SSF55811 4 93 1.62E-18 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RMA_RS02900 2b80542734937153e62278a44718795b 103 Pfam PF00293 NUDIX domain 3 103 3.5E-14 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RMA_RS02900 2b80542734937153e62278a44718795b 103 PANTHER PTHR16099 19 103 1.2E-32 T 22-04-2016 RMA_RS07300 48a4fbb4eba83c51f1c9cef1964bdc69 509 PANTHER PTHR11669 9 369 1.0E-130 T 22-04-2016 RMA_RS07300 48a4fbb4eba83c51f1c9cef1964bdc69 509 SUPERFAMILY SSF52540 38 236 2.9E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS07300 48a4fbb4eba83c51f1c9cef1964bdc69 509 SUPERFAMILY SSF48019 257 379 1.28E-13 T 22-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RMA_RS07300 48a4fbb4eba83c51f1c9cef1964bdc69 509 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 249 377 2.4E-21 T 22-04-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 RMA_RS07300 48a4fbb4eba83c51f1c9cef1964bdc69 509 Gene3D G3DSA:1.10.8.60 178 256 2.4E-28 T 22-04-2016 RMA_RS07300 48a4fbb4eba83c51f1c9cef1964bdc69 509 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 10 370 1.3E-131 T 22-04-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 RMA_RS07300 48a4fbb4eba83c51f1c9cef1964bdc69 509 PANTHER PTHR11669:SF0 9 369 1.0E-130 T 22-04-2016 RMA_RS07300 48a4fbb4eba83c51f1c9cef1964bdc69 509 SMART SM00382 44 189 5.0E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS07300 48a4fbb4eba83c51f1c9cef1964bdc69 509 Pfam PF13177 DNA polymerase III, delta subunit 27 189 2.2E-43 T 22-04-2016 RMA_RS07300 48a4fbb4eba83c51f1c9cef1964bdc69 509 Gene3D G3DSA:1.20.272.10 257 370 2.6E-10 T 22-04-2016 RMA_RS07300 48a4fbb4eba83c51f1c9cef1964bdc69 509 Gene3D G3DSA:3.40.50.300 22 177 5.8E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05385 ffe000d994da872ff15d3dff2450a5ac 234 PANTHER PTHR21262 12 197 2.5E-24 T 22-04-2016 RMA_RS05385 ffe000d994da872ff15d3dff2450a5ac 234 SUPERFAMILY SSF109604 16 204 1.07E-42 T 22-04-2016 RMA_RS05385 ffe000d994da872ff15d3dff2450a5ac 234 PANTHER PTHR21262:SF0 12 197 2.5E-24 T 22-04-2016 RMA_RS05385 ffe000d994da872ff15d3dff2450a5ac 234 Pfam PF13328 HD domain 42 190 4.7E-15 T 22-04-2016 IPR003607 HD/PDEase domain RMA_RS01660 65a05c03373ae4b3398fc78c28efea96 137 ProDom PD200507 RP222 23 135 4.0E-59 T 22-04-2016 IPR022589 Protein of unknown function DUF2660 RMA_RS01660 65a05c03373ae4b3398fc78c28efea96 137 Pfam PF10859 Protein of unknown function (DUF2660) 22 108 1.1E-49 T 22-04-2016 IPR022589 Protein of unknown function DUF2660 RMA_RS05035 4b83328ae6c8767da06d66b5c7265b8b 173 Gene3D G3DSA:3.90.80.10 6 171 5.1E-59 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RMA_RS05035 4b83328ae6c8767da06d66b5c7265b8b 173 Pfam PF00719 Inorganic pyrophosphatase 17 171 1.1E-53 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RMA_RS05035 4b83328ae6c8767da06d66b5c7265b8b 173 SUPERFAMILY SSF50324 12 171 1.18E-63 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RMA_RS05035 4b83328ae6c8767da06d66b5c7265b8b 173 PANTHER PTHR10286 14 171 3.3E-64 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RMA_RS05035 4b83328ae6c8767da06d66b5c7265b8b 173 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 13 173 37.343 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RMA_RS05035 4b83328ae6c8767da06d66b5c7265b8b 173 PANTHER PTHR10286:SF15 14 171 3.3E-64 T 22-04-2016 RMA_RS05035 4b83328ae6c8767da06d66b5c7265b8b 173 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 65 71 - T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RMA_RS01200 92c9a9ba2ce95bc26f3449adf2fb0c24 385 SUPERFAMILY SSF102114 4 384 6.41E-95 T 22-04-2016 RMA_RS01200 92c9a9ba2ce95bc26f3449adf2fb0c24 385 Gene3D G3DSA:3.80.30.20 8 242 5.6E-30 T 22-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RMA_RS01200 92c9a9ba2ce95bc26f3449adf2fb0c24 385 PANTHER PTHR13932:SF5 1 385 1.8E-145 T 22-04-2016 RMA_RS01200 92c9a9ba2ce95bc26f3449adf2fb0c24 385 PANTHER PTHR13932 1 385 1.8E-145 T 22-04-2016 RMA_RS01200 92c9a9ba2ce95bc26f3449adf2fb0c24 385 Pfam PF04055 Radical SAM superfamily 12 180 2.7E-18 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RMA_RS01200 92c9a9ba2ce95bc26f3449adf2fb0c24 385 SMART SM00729 7 226 1.2E-51 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RMA_RS01200 92c9a9ba2ce95bc26f3449adf2fb0c24 385 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 9 355 2.6E-88 T 22-04-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.- RMA_RS01200 92c9a9ba2ce95bc26f3449adf2fb0c24 385 Pfam PF06969 HemN C-terminal domain 309 373 6.0E-15 T 22-04-2016 IPR010723 HemN, C-terminal RMA_RS00935 62e3fff1f5c66ec1120043769f540401 247 Gene3D G3DSA:3.40.250.10 98 227 4.2E-39 T 22-04-2016 IPR001763 Rhodanese-like domain RMA_RS00935 62e3fff1f5c66ec1120043769f540401 247 Hamap MF_00469 UPF0176 protein YceA [yceA]. 3 243 38.66 T 22-04-2016 IPR020936 Uncharacterised protein family UPF0176 RMA_RS00935 62e3fff1f5c66ec1120043769f540401 247 PANTHER PTHR22778:SF21 2 234 1.2E-70 T 22-04-2016 RMA_RS00935 62e3fff1f5c66ec1120043769f540401 247 SUPERFAMILY SSF52821 101 239 3.7E-30 T 22-04-2016 IPR001763 Rhodanese-like domain RMA_RS00935 62e3fff1f5c66ec1120043769f540401 247 SMART SM00450 114 215 1.8E-19 T 22-04-2016 IPR001763 Rhodanese-like domain RMA_RS00935 62e3fff1f5c66ec1120043769f540401 247 Pfam PF00581 Rhodanese-like domain 116 211 6.4E-9 T 22-04-2016 IPR001763 Rhodanese-like domain RMA_RS00935 62e3fff1f5c66ec1120043769f540401 247 PANTHER PTHR22778 2 234 1.2E-70 T 22-04-2016 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 4 886 28.695 T 22-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 Gene3D G3DSA:2.120.10.90 783 882 5.1E-115 T 22-04-2016 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 Gene3D G3DSA:2.120.10.90 522 734 5.1E-115 T 22-04-2016 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 PANTHER PTHR10169 441 742 0.0 T 22-04-2016 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 530 572 1.6E-9 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 786 833 1.0E-10 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 639 682 3.5E-6 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 582 628 1.5E-4 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 836 882 1.5E-14 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 686 733 4.6E-11 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 Gene3D G3DSA:1.10.268.10 363 487 1.0E-38 T 22-04-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 PANTHER PTHR10169:SF48 3 414 0.0 T 22-04-2016 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 9 883 0.0 T 22-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 PANTHER PTHR10169:SF48 441 742 0.0 T 22-04-2016 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 SMART SM00434 12 490 1.3E-292 T 22-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 SUPERFAMILY SSF56719 31 512 6.15E-178 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 PANTHER PTHR10169 774 857 0.0 T 22-04-2016 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 PANTHER PTHR10169 3 414 0.0 T 22-04-2016 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 SUPERFAMILY SSF101904 524 735 8.76E-97 T 22-04-2016 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 SUPERFAMILY SSF101904 783 897 8.76E-97 T 22-04-2016 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 Gene3D G3DSA:3.30.1360.40 237 332 7.6E-38 T 22-04-2016 IPR024946 Arginine repressor C-terminal-like domain RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 489 8.9E-156 T 22-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 Gene3D G3DSA:3.90.199.10 35 217 5.5E-84 T 22-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RMA_RS01460 063b8186e94fe4a8e16e5973b500a75c 905 PANTHER PTHR10169:SF48 774 857 0.0 T 22-04-2016 RMA_RS01585 4df2c8c0a566387335658c5a4d75efde 339 PANTHER PTHR30365:SF4 3 332 3.0E-140 T 22-04-2016 RMA_RS01585 4df2c8c0a566387335658c5a4d75efde 339 PIRSF PIRSF000267 6 338 8.6E-89 T 22-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RMA_RS01585 4df2c8c0a566387335658c5a4d75efde 339 PANTHER PTHR30365 3 332 3.0E-140 T 22-04-2016 RMA_RS01585 4df2c8c0a566387335658c5a4d75efde 339 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 10 329 2.6E-94 T 22-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RMA_RS01585 4df2c8c0a566387335658c5a4d75efde 339 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 9 218 1.8E-43 T 22-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RMA_RS03215 14a9acdddf6f633985d7755d1329ffeb 234 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 188 214 - T 22-04-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00557 RMA_RS03215 14a9acdddf6f633985d7755d1329ffeb 234 PANTHER PTHR13773 43 226 1.2E-38 T 22-04-2016 RMA_RS03215 14a9acdddf6f633985d7755d1329ffeb 234 Pfam PF01148 Cytidylyltransferase family 63 226 1.0E-41 T 22-04-2016 RMA_RS02615 73aa0623189d1a6c491f073643fa9fbc 165 SUPERFAMILY SSF50447 6 91 6.0E-14 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RMA_RS02615 73aa0623189d1a6c491f073643fa9fbc 165 Pfam PF05239 PRC-barrel domain 94 153 7.5E-8 T 22-04-2016 IPR027275 PRC-barrel domain RMA_RS02615 73aa0623189d1a6c491f073643fa9fbc 165 PANTHER PTHR33692 5 155 1.4E-25 T 22-04-2016 RMA_RS02615 73aa0623189d1a6c491f073643fa9fbc 165 Pfam PF01782 RimM N-terminal domain 10 87 3.6E-13 T 22-04-2016 IPR002676 RimM protein GO:0006364 RMA_RS02615 73aa0623189d1a6c491f073643fa9fbc 165 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 7 165 17.485 T 22-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RMA_RS02615 73aa0623189d1a6c491f073643fa9fbc 165 Gene3D G3DSA:2.30.30.240 97 148 5.5E-8 T 22-04-2016 RMA_RS02615 73aa0623189d1a6c491f073643fa9fbc 165 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 8 163 1.3E-43 T 22-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RMA_RS02615 73aa0623189d1a6c491f073643fa9fbc 165 Gene3D G3DSA:2.40.30.60 2 91 2.3E-15 T 22-04-2016 IPR002676 RimM protein GO:0006364 RMA_RS02615 73aa0623189d1a6c491f073643fa9fbc 165 SUPERFAMILY SSF50346 97 152 5.3E-10 T 22-04-2016 IPR011033 PRC-barrel-like RMA_RS00860 d63770af4257647ad9385b6e8da17ee3 78 Pfam PF10073 Uncharacterized protein conserved in bacteria (DUF2312) 7 77 5.7E-27 T 22-04-2016 IPR018753 Azospirillum phage Cd, Gp10 RMA_RS00860 d63770af4257647ad9385b6e8da17ee3 78 Hamap MF_00797 UPF0335 protein . 1 78 20.546 T 22-04-2016 IPR018753 Azospirillum phage Cd, Gp10 RMA_RS02850 a373de53b138e302c43e70c0e0bb543a 130 PANTHER PTHR33360 2 129 3.1E-49 T 22-04-2016 RMA_RS02850 a373de53b138e302c43e70c0e0bb543a 130 Pfam PF01797 Transposase IS200 like 12 129 6.4E-40 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS02850 a373de53b138e302c43e70c0e0bb543a 130 SUPERFAMILY SSF143422 1 129 9.42E-45 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS02850 a373de53b138e302c43e70c0e0bb543a 130 Gene3D G3DSA:3.30.70.1290 1 129 3.0E-48 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS02850 a373de53b138e302c43e70c0e0bb543a 130 SMART SM01321 11 130 4.1E-42 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RMA_RS00940 df99f0a2d8e7c87a4b2c8e41264ad82d 124 SUPERFAMILY SSF81343 6 124 4.14E-33 T 22-04-2016 RMA_RS00940 df99f0a2d8e7c87a4b2c8e41264ad82d 124 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 10 122 7.3E-28 T 22-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 RMA_RS00940 df99f0a2d8e7c87a4b2c8e41264ad82d 124 Gene3D G3DSA:1.20.1300.10 9 124 2.9E-40 T 22-04-2016 RMA_RS00940 df99f0a2d8e7c87a4b2c8e41264ad82d 124 PIRSF PIRSF000178 1 124 1.6E-44 T 22-04-2016 RMA_RS00940 df99f0a2d8e7c87a4b2c8e41264ad82d 124 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 12 36 - T 22-04-2016 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 UniPathway: UPA00223 RMA_RS00940 df99f0a2d8e7c87a4b2c8e41264ad82d 124 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 83 96 - T 22-04-2016 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 UniPathway: UPA00223 RMA_RS00940 df99f0a2d8e7c87a4b2c8e41264ad82d 124 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 10 124 5.0E-37 T 22-04-2016 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 UniPathway: UPA00223 RMA_RS00940 df99f0a2d8e7c87a4b2c8e41264ad82d 124 PANTHER PTHR10978 11 124 1.6E-41 T 22-04-2016 RMA_RS05100 332aa01f45fa29174603bf6ea37a3a1a 479 Gene3D G3DSA:3.40.1190.10 88 327 4.8E-72 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS05100 332aa01f45fa29174603bf6ea37a3a1a 479 PANTHER PTHR23135:SF4 1 470 2.8E-135 T 22-04-2016 RMA_RS05100 332aa01f45fa29174603bf6ea37a3a1a 479 Pfam PF08245 Mur ligase middle domain 96 300 1.2E-45 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS05100 332aa01f45fa29174603bf6ea37a3a1a 479 Gene3D G3DSA:3.90.190.20 328 465 5.3E-50 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RMA_RS05100 332aa01f45fa29174603bf6ea37a3a1a 479 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 12 472 5.4E-157 T 22-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 RMA_RS05100 332aa01f45fa29174603bf6ea37a3a1a 479 SUPERFAMILY SSF53244 322 472 2.35E-44 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RMA_RS05100 332aa01f45fa29174603bf6ea37a3a1a 479 Gene3D G3DSA:3.40.1390.10 9 86 1.0E-15 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS05100 332aa01f45fa29174603bf6ea37a3a1a 479 PANTHER PTHR23135 1 470 2.8E-135 T 22-04-2016 RMA_RS05100 332aa01f45fa29174603bf6ea37a3a1a 479 SUPERFAMILY SSF53623 87 318 1.14E-57 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS05100 332aa01f45fa29174603bf6ea37a3a1a 479 Pfam PF02875 Mur ligase family, glutamate ligase domain 322 405 1.4E-20 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RMA_RS05100 332aa01f45fa29174603bf6ea37a3a1a 479 Pfam PF01225 Mur ligase family, catalytic domain 14 83 3.4E-10 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS05100 332aa01f45fa29174603bf6ea37a3a1a 479 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 3 472 30.491 T 22-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 RMA_RS05100 332aa01f45fa29174603bf6ea37a3a1a 479 SUPERFAMILY SSF63418 4 87 2.49E-17 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS05610 ac5af84b82e90a0536be35d192d339e2 215 PANTHER PTHR11229 1 209 8.1E-106 T 22-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05610 ac5af84b82e90a0536be35d192d339e2 215 SUPERFAMILY SSF50447 1 210 1.15E-76 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RMA_RS05610 ac5af84b82e90a0536be35d192d339e2 215 Gene3D G3DSA:4.10.960.10 78 158 1.2E-27 T 22-04-2016 RMA_RS05610 ac5af84b82e90a0536be35d192d339e2 215 Gene3D G3DSA:2.40.30.10 159 210 1.1E-9 T 22-04-2016 RMA_RS05610 ac5af84b82e90a0536be35d192d339e2 215 Gene3D G3DSA:2.40.30.10 3 41 1.1E-9 T 22-04-2016 RMA_RS05610 ac5af84b82e90a0536be35d192d339e2 215 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 208 34.207 T 22-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05610 ac5af84b82e90a0536be35d192d339e2 215 Pfam PF00297 Ribosomal protein L3 80 186 3.1E-17 T 22-04-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05610 ac5af84b82e90a0536be35d192d339e2 215 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 22-04-2016 IPR019926 Ribosomal protein L3, conserved site RMA_RS05610 ac5af84b82e90a0536be35d192d339e2 215 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 205 9.5E-81 T 22-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00350 39bfbef2bc7208deaecf111a557865e2 163 ProDom PD542693 RC0060 PLASMID 1 161 2.0E-67 T 22-04-2016 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 SMART SM00836 446 576 8.5E-51 T 22-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 Gene3D G3DSA:1.10.730.10 452 576 5.3E-34 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 PANTHER PTHR11956:SF6 313 576 1.1E-162 T 22-04-2016 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 PANTHER PTHR11956:SF6 1 297 1.1E-162 T 22-04-2016 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 576 24.608 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 Pfam PF05746 DALR anticodon binding domain 446 576 3.4E-30 T 22-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 SUPERFAMILY SSF47323 440 576 2.35E-32 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 Gene3D G3DSA:3.30.1360.70 1 107 2.1E-24 T 22-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 PANTHER PTHR11956 313 576 1.1E-162 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 PANTHER PTHR11956 1 297 1.1E-162 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 5 576 2.1E-103 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 Gene3D G3DSA:3.40.50.620 112 451 1.2E-85 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 Pfam PF00750 tRNA synthetases class I (R) 98 376 6.8E-17 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 SMART SM01016 5 89 3.2E-21 T 22-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 SUPERFAMILY SSF52374 112 456 8.73E-79 T 22-04-2016 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 SUPERFAMILY SSF55190 8 102 2.49E-17 T 22-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 118 133 9.5E-23 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 315 336 9.5E-23 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 133 149 9.5E-23 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 157 170 9.5E-23 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 6 89 1.5E-16 T 22-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RMA_RS00560 df15781c090b1bdafc14fec9e7df1397 576 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 128 137 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS01820 21115673d3e789901f8fd217786968ae 485 SUPERFAMILY SSF53244 324 470 3.66E-43 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RMA_RS01820 21115673d3e789901f8fd217786968ae 485 Gene3D G3DSA:3.90.190.20 327 473 5.6E-49 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RMA_RS01820 21115673d3e789901f8fd217786968ae 485 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 16 470 2.7E-182 T 22-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS01820 21115673d3e789901f8fd217786968ae 485 SUPERFAMILY SSF51984 14 100 1.23E-29 T 22-04-2016 RMA_RS01820 21115673d3e789901f8fd217786968ae 485 Pfam PF02875 Mur ligase family, glutamate ligase domain 325 413 2.0E-20 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RMA_RS01820 21115673d3e789901f8fd217786968ae 485 Gene3D G3DSA:3.40.50.720 15 101 2.6E-36 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS01820 21115673d3e789901f8fd217786968ae 485 Pfam PF01225 Mur ligase family, catalytic domain 15 112 5.9E-29 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS01820 21115673d3e789901f8fd217786968ae 485 SUPERFAMILY SSF53623 99 323 6.28E-61 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS01820 21115673d3e789901f8fd217786968ae 485 PANTHER PTHR23135:SF5 8 464 5.6E-181 T 22-04-2016 RMA_RS01820 21115673d3e789901f8fd217786968ae 485 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 13 476 41.78 T 22-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS01820 21115673d3e789901f8fd217786968ae 485 PANTHER PTHR23135 8 464 5.6E-181 T 22-04-2016 RMA_RS01820 21115673d3e789901f8fd217786968ae 485 Pfam PF08245 Mur ligase middle domain 118 304 4.2E-28 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS01820 21115673d3e789901f8fd217786968ae 485 Gene3D G3DSA:3.40.1190.10 102 326 3.9E-68 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS03655 25e878a1ff66619b30811403f6918982 426 PIRSF PIRSF001563 7 426 1.5E-107 T 22-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RMA_RS03655 25e878a1ff66619b30811403f6918982 426 SUPERFAMILY SSF53623 13 284 2.4E-84 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS03655 25e878a1ff66619b30811403f6918982 426 SUPERFAMILY SSF53244 302 426 7.33E-17 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RMA_RS03655 25e878a1ff66619b30811403f6918982 426 TIGRFAM TIGR01499 folC: bifunctional protein FolC 19 425 5.2E-123 T 22-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RMA_RS03655 25e878a1ff66619b30811403f6918982 426 Gene3D G3DSA:3.40.1190.10 10 285 3.4E-84 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS03655 25e878a1ff66619b30811403f6918982 426 PANTHER PTHR11136:SF0 12 426 2.3E-105 T 22-04-2016 RMA_RS03655 25e878a1ff66619b30811403f6918982 426 Gene3D G3DSA:3.90.190.20 301 426 4.3E-18 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RMA_RS03655 25e878a1ff66619b30811403f6918982 426 PANTHER PTHR11136 12 426 2.3E-105 T 22-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RMA_RS03655 25e878a1ff66619b30811403f6918982 426 Pfam PF08245 Mur ligase middle domain 42 260 7.9E-9 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS03655 25e878a1ff66619b30811403f6918982 426 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 134 149 - T 22-04-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 PRINTS PR00423 Cell division protein FtsZ signature 215 236 9.7E-51 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 PRINTS PR00423 Cell division protein FtsZ signature 129 150 9.7E-51 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 PRINTS PR00423 Cell division protein FtsZ signature 192 214 9.7E-51 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 PRINTS PR00423 Cell division protein FtsZ signature 101 121 9.7E-51 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 12 387 37.302 T 22-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 Pfam PF12327 FtsZ family, C-terminal domain 225 321 4.7E-38 T 22-04-2016 IPR024757 Cell division protein FtsZ, C-terminal RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 SMART SM00865 210 329 3.1E-57 T 22-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 17 177 4.5E-40 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 Gene3D G3DSA:3.40.50.1440 16 217 9.1E-92 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 SUPERFAMILY SSF52490 16 211 8.37E-68 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 Gene3D G3DSA:3.30.1330.20 218 325 8.5E-49 T 22-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 SMART SM00864 16 208 2.9E-107 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 ProSitePatterns PS01134 FtsZ protein signature 1. 47 81 - T 22-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 PANTHER PTHR30314:SF3 3 383 9.1E-170 T 22-04-2016 RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 PANTHER PTHR30314 3 383 9.1E-170 T 22-04-2016 RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 ProSitePatterns PS01135 FtsZ protein signature 2. 100 121 - T 22-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 SUPERFAMILY SSF55307 207 325 1.4E-41 T 22-04-2016 IPR008280 Tubulin/FtsZ, C-terminal RMA_RS05660 fcb287036c7db7d12d876a6938f95869 452 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 14 340 7.3E-121 T 22-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 RMA_RS01440 78ecf1df663371d363269c17350d67dc 193 Pfam PF01351 Ribonuclease HII 18 192 1.9E-36 T 22-04-2016 IPR024567 Ribonuclease HII/HIII domain RMA_RS01440 78ecf1df663371d363269c17350d67dc 193 PANTHER PTHR10954 16 191 7.8E-64 T 22-04-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 RMA_RS01440 78ecf1df663371d363269c17350d67dc 193 Gene3D G3DSA:3.30.420.10 16 154 6.7E-43 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS01440 78ecf1df663371d363269c17350d67dc 193 Hamap MF_00052_B Ribonuclease HII [rnhB]. 16 193 33.096 T 22-04-2016 IPR022898 Ribonuclease HII GO:0004523 RMA_RS01440 78ecf1df663371d363269c17350d67dc 193 SUPERFAMILY SSF53098 11 191 3.34E-63 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS05635 325fed8f3a2103a97f34b2c3e8c4ee4e 241 SMART SM00967 13 83 1.7E-10 T 22-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 RMA_RS05635 325fed8f3a2103a97f34b2c3e8c4ee4e 241 SUPERFAMILY SSF75217 71 238 8.9E-41 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases RMA_RS05635 325fed8f3a2103a97f34b2c3e8c4ee4e 241 Gene3D G3DSA:3.30.1330.30 13 79 1.2E-8 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like RMA_RS05635 325fed8f3a2103a97f34b2c3e8c4ee4e 241 Gene3D G3DSA:3.40.1280.10 97 238 3.1E-43 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RMA_RS05635 325fed8f3a2103a97f34b2c3e8c4ee4e 241 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 13 79 3.3E-11 T 22-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 RMA_RS05635 325fed8f3a2103a97f34b2c3e8c4ee4e 241 Pfam PF00588 SpoU rRNA Methylase family 98 235 7.6E-37 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RMA_RS05635 325fed8f3a2103a97f34b2c3e8c4ee4e 241 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 13 237 2.7E-57 T 22-04-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 RMA_RS05635 325fed8f3a2103a97f34b2c3e8c4ee4e 241 SUPERFAMILY SSF55315 8 79 4.59E-12 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like RMA_RS05635 325fed8f3a2103a97f34b2c3e8c4ee4e 241 PANTHER PTHR12029 15 238 2.5E-57 T 22-04-2016 RMA_RS03920 4f50796de1a7c42c9ffb987ba0fdc45d 563 PANTHER PTHR30121 194 490 1.3E-26 T 22-04-2016 RMA_RS03920 4f50796de1a7c42c9ffb987ba0fdc45d 563 Pfam PF10412 Type IV secretion-system coupling protein DNA-binding domain 181 559 7.2E-129 T 22-04-2016 IPR019476 Type IV secretion system coupling protein TraD, DNA-binding domain RMA_RS03920 4f50796de1a7c42c9ffb987ba0fdc45d 563 Gene3D G3DSA:3.40.50.300 146 257 2.4E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03920 4f50796de1a7c42c9ffb987ba0fdc45d 563 Gene3D G3DSA:3.40.50.300 367 554 2.4E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03920 4f50796de1a7c42c9ffb987ba0fdc45d 563 Gene3D G3DSA:1.10.8.80 258 363 3.8E-11 T 22-04-2016 RMA_RS03920 4f50796de1a7c42c9ffb987ba0fdc45d 563 SUPERFAMILY SSF52540 194 560 1.5E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03920 4f50796de1a7c42c9ffb987ba0fdc45d 563 Pfam PF12615 F sex factor protein N terminal 30 136 2.7E-9 T 22-04-2016 IPR022585 TraD coupling protein, N-terminal RMA_RS03920 4f50796de1a7c42c9ffb987ba0fdc45d 563 PANTHER PTHR30121:SF1 194 490 1.3E-26 T 22-04-2016 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 SUPERFAMILY SSF69705 6 129 9.02E-38 T 22-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 Pfam PF08529 NusA N-terminal domain 8 128 8.0E-31 T 22-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 Gene3D G3DSA:1.10.150.20 362 420 2.8E-12 T 22-04-2016 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 Gene3D G3DSA:1.10.150.20 435 497 1.9E-7 T 22-04-2016 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 SMART SM00316 137 203 7.3E-10 T 22-04-2016 IPR022967 RNA-binding domain, S1 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 371 420 1.5E-18 T 22-04-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 Gene3D G3DSA:2.40.50.140 133 201 1.4E-27 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 SMART SM00322 307 383 8.8E-5 T 22-04-2016 IPR004087 K Homology domain GO:0003676 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 Gene3D G3DSA:3.30.300.20 281 352 1.0E-27 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 SUPERFAMILY SSF47794 355 421 8.32E-11 T 22-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 SUPERFAMILY SSF54814 205 281 6.15E-28 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 Pfam PF00575 S1 RNA binding domain 135 197 1.0E-5 T 22-04-2016 IPR003029 S1 domain GO:0003676 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 SUPERFAMILY SSF47794 436 497 4.97E-5 T 22-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 SUPERFAMILY SSF50249 135 202 4.29E-18 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 Pfam PF13184 NusA-like KH domain 233 295 1.2E-23 T 22-04-2016 IPR025249 KH domain, NusA-like GO:0003723 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 6 416 28.995 T 22-04-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 PANTHER PTHR22648 5 454 2.0E-146 T 22-04-2016 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 PANTHER PTHR22648:SF0 5 454 2.0E-146 T 22-04-2016 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 Gene3D G3DSA:3.30.1480.10 6 128 4.5E-39 T 22-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 Pfam PF14520 Helix-hairpin-helix domain 377 413 0.0012 T 22-04-2016 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 Gene3D G3DSA:3.30.300.20 203 280 7.2E-32 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 SUPERFAMILY SSF54814 282 348 3.92E-13 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RMA_RS04595 b48d9ffa8e2d3dfee8117f3f035583af 503 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 8 349 1.2E-117 T 22-04-2016 IPR010213 Transcription termination factor NusA GO:0003723 RMA_RS06310 5b922590a87993a57953e809d4ac8fc4 87 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 83 27.149 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS06310 5b922590a87993a57953e809d4ac8fc4 87 PRINTS PR00063 Ribosomal protein L27 signature 54 78 4.9E-37 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS06310 5b922590a87993a57953e809d4ac8fc4 87 PRINTS PR00063 Ribosomal protein L27 signature 4 28 4.9E-37 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS06310 5b922590a87993a57953e809d4ac8fc4 87 PRINTS PR00063 Ribosomal protein L27 signature 29 53 4.9E-37 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS06310 5b922590a87993a57953e809d4ac8fc4 87 Pfam PF01016 Ribosomal L27 protein 2 80 1.6E-38 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS06310 5b922590a87993a57953e809d4ac8fc4 87 Gene3D G3DSA:2.40.50.100 20 80 2.8E-31 T 22-04-2016 RMA_RS06310 5b922590a87993a57953e809d4ac8fc4 87 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 22-04-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS06310 5b922590a87993a57953e809d4ac8fc4 87 SUPERFAMILY SSF110324 2 80 3.14E-34 T 22-04-2016 RMA_RS06310 5b922590a87993a57953e809d4ac8fc4 87 PANTHER PTHR15893 1 80 9.4E-47 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS06310 5b922590a87993a57953e809d4ac8fc4 87 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 69 4.0E-18 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS06310 5b922590a87993a57953e809d4ac8fc4 87 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 80 1.2E-37 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 PANTHER PTHR10060 1 16 2.1E-124 T 22-04-2016 IPR001130 TatD family GO:0016788 RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 PANTHER PTHR10060 132 316 2.1E-124 T 22-04-2016 IPR001130 TatD family GO:0016788 RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 PANTHER PTHR10060 44 107 2.1E-124 T 22-04-2016 IPR001130 TatD family GO:0016788 RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 Gene3D G3DSA:3.20.20.140 49 313 1.2E-84 T 22-04-2016 RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 Gene3D G3DSA:3.20.20.140 1 16 1.2E-84 T 22-04-2016 RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 136 313 3.0E-79 T 22-04-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 SUPERFAMILY SSF51556 49 104 2.58E-80 T 22-04-2016 IPR032466 Metal-dependent hydrolase RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 SUPERFAMILY SSF51556 134 314 2.58E-80 T 22-04-2016 IPR032466 Metal-dependent hydrolase RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 SUPERFAMILY SSF51556 1 16 2.58E-80 T 22-04-2016 IPR032466 Metal-dependent hydrolase RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 22-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 TIGRFAM TIGR03777 RPE4: rickettsial palindromic element RPE4 domain 15 46 2.3E-12 T 22-04-2016 IPR022439 Rickettsia palindromic element RPE4 RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 Pfam PF01026 TatD related DNase 3 313 2.2E-79 T 22-04-2016 IPR001130 TatD family GO:0016788 RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 PIRSF PIRSF005902 1 317 1.7E-93 T 22-04-2016 IPR001130 TatD family GO:0016788 RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 183 193 - T 22-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 PANTHER PTHR10060:SF20 1 16 2.1E-124 T 22-04-2016 RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 PANTHER PTHR10060:SF20 132 316 2.1E-124 T 22-04-2016 RMA_RS05825 92f8ad2920983018fd9f2bef65e65229 323 PANTHER PTHR10060:SF20 44 107 2.1E-124 T 22-04-2016 RMA_RS07055 9c5e184fcd2556e083831d3269aa15b0 417 Pfam PF00155 Aminotransferase class I and II 43 386 3.0E-69 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RMA_RS07055 9c5e184fcd2556e083831d3269aa15b0 417 Gene3D G3DSA:3.40.640.10 58 282 6.0E-82 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RMA_RS07055 9c5e184fcd2556e083831d3269aa15b0 417 SUPERFAMILY SSF53383 3 398 7.1E-100 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RMA_RS07055 9c5e184fcd2556e083831d3269aa15b0 417 Gene3D G3DSA:3.90.1150.10 283 397 4.8E-24 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RMA_RS07055 9c5e184fcd2556e083831d3269aa15b0 417 PANTHER PTHR13693:SF57 4 414 3.5E-215 T 22-04-2016 RMA_RS07055 9c5e184fcd2556e083831d3269aa15b0 417 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 3 401 1.6E-196 T 22-04-2016 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: REACT_9431|UniPathway: UPA00251 RMA_RS07055 9c5e184fcd2556e083831d3269aa15b0 417 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 244 253 - T 22-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 RMA_RS07055 9c5e184fcd2556e083831d3269aa15b0 417 PANTHER PTHR13693 4 414 3.5E-215 T 22-04-2016 RMA_RS01455 1960f2cb76f19225cbfcd7a6e6b0dcd1 588 Pfam PF00005 ABC transporter 363 512 1.9E-34 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS01455 1960f2cb76f19225cbfcd7a6e6b0dcd1 588 Gene3D G3DSA:3.40.50.300 347 577 6.0E-82 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01455 1960f2cb76f19225cbfcd7a6e6b0dcd1 588 ProSitePatterns PS00211 ABC transporters family signature. 484 498 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS01455 1960f2cb76f19225cbfcd7a6e6b0dcd1 588 PANTHER PTHR24221 1 586 0.0 T 22-04-2016 RMA_RS01455 1960f2cb76f19225cbfcd7a6e6b0dcd1 588 PANTHER PTHR24221:SF18 1 586 0.0 T 22-04-2016 RMA_RS01455 1960f2cb76f19225cbfcd7a6e6b0dcd1 588 SMART SM00382 372 564 2.1E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS01455 1960f2cb76f19225cbfcd7a6e6b0dcd1 588 SUPERFAMILY SSF52540 339 582 2.61E-92 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01455 1960f2cb76f19225cbfcd7a6e6b0dcd1 588 Gene3D G3DSA:1.20.1560.10 14 330 2.3E-61 T 22-04-2016 RMA_RS01455 1960f2cb76f19225cbfcd7a6e6b0dcd1 588 SUPERFAMILY SSF90123 14 330 3.01E-59 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RMA_RS01455 1960f2cb76f19225cbfcd7a6e6b0dcd1 588 Pfam PF00664 ABC transporter transmembrane region 31 300 1.4E-39 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RMA_RS07230 2905b718f79e889c510bd4f37d01e421 85 SUPERFAMILY SSF116734 2 83 7.19E-19 T 22-04-2016 RMA_RS07230 2905b718f79e889c510bd4f37d01e421 85 Pfam PF01420 Type I restriction modification DNA specificity domain 3 70 1.0E-11 T 22-04-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 RMA_RS03930 aa4b00a7e4d9cd039a58774936b4cc80 1378 Pfam PF13362 Toprim domain 1097 1190 6.7E-19 T 22-04-2016 IPR006171 Toprim domain RMA_RS03930 aa4b00a7e4d9cd039a58774936b4cc80 1378 Pfam PF03389 MobA/MobL family 18 209 5.0E-31 T 22-04-2016 IPR005053 MobA/MobL protein RMA_RS03930 aa4b00a7e4d9cd039a58774936b4cc80 1378 SUPERFAMILY SSF57783 893 933 1.39E-7 T 22-04-2016 RMA_RS03930 aa4b00a7e4d9cd039a58774936b4cc80 1378 Gene3D G3DSA:3.40.1360.10 1094 1197 1.5E-5 T 22-04-2016 RMA_RS03930 aa4b00a7e4d9cd039a58774936b4cc80 1378 SUPERFAMILY SSF52540 340 702 4.21E-27 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03930 aa4b00a7e4d9cd039a58774936b4cc80 1378 Gene3D G3DSA:3.40.50.300 337 514 3.4E-26 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03930 aa4b00a7e4d9cd039a58774936b4cc80 1378 Gene3D G3DSA:3.90.580.10 893 934 1.4E-7 T 22-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RMA_RS03930 aa4b00a7e4d9cd039a58774936b4cc80 1378 Pfam PF13604 AAA domain 344 530 7.2E-44 T 22-04-2016 RMA_RS03010 bd49da5e5c63ded43ffe79783c2e8b28 304 PANTHER PTHR30341 37 303 1.1E-75 T 22-04-2016 RMA_RS03010 bd49da5e5c63ded43ffe79783c2e8b28 304 SUPERFAMILY SSF52096 183 244 1.02E-36 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS03010 bd49da5e5c63ded43ffe79783c2e8b28 304 SUPERFAMILY SSF52096 39 154 1.02E-36 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS03010 bd49da5e5c63ded43ffe79783c2e8b28 304 PANTHER PTHR30341:SF1 37 303 1.1E-75 T 22-04-2016 RMA_RS03010 bd49da5e5c63ded43ffe79783c2e8b28 304 Gene3D G3DSA:3.90.226.10 37 150 6.3E-39 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS03010 bd49da5e5c63ded43ffe79783c2e8b28 304 Gene3D G3DSA:3.90.226.10 219 252 6.3E-39 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS03010 bd49da5e5c63ded43ffe79783c2e8b28 304 Pfam PF01343 Peptidase family S49 107 251 3.6E-31 T 22-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 Pfam PF00364 Biotin-requiring enzyme 604 663 2.8E-12 T 22-04-2016 IPR000089 Biotin/lipoyl attachment RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 SUPERFAMILY SSF51246 335 450 4.39E-36 T 22-04-2016 IPR011054 Rudiment single hybrid motif RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 157 171 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 Gene3D G3DSA:3.40.50.20 6 133 2.5E-48 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 290 297 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 Pfam PF02785 Biotin carboxylase C-terminal domain 340 447 5.6E-34 T 22-04-2016 IPR005482 Biotin carboxylase, C-terminal RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 119 326 1.4E-78 T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 PANTHER PTHR18866:SF92 5 664 0.0 T 22-04-2016 RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 621 638 - T 22-04-2016 IPR001882 Biotin-binding site RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 Pfam PF00289 Biotin carboxylase, N-terminal domain 6 113 6.0E-42 T 22-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 SMART SM00878 340 447 2.3E-50 T 22-04-2016 IPR005482 Biotin carboxylase, C-terminal RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 Gene3D G3DSA:3.30.1490.20 134 205 3.3E-29 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 SUPERFAMILY SSF56059 87 352 8.66E-70 T 22-04-2016 RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 Gene3D G3DSA:3.30.470.20 207 450 2.0E-95 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 SUPERFAMILY SSF51230 590 664 1.57E-15 T 22-04-2016 IPR011053 Single hybrid motif RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 SUPERFAMILY SSF52440 4 117 1.44E-44 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 PANTHER PTHR18866 5 664 0.0 T 22-04-2016 RMA_RS05325 3b6a6f37b4a3d6ead3d7bf3e3a953477 665 Gene3D G3DSA:2.40.50.100 595 664 4.0E-20 T 22-04-2016 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 Gene3D G3DSA:3.90.800.10 69 184 1.3E-26 T 22-04-2016 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 Gene3D G3DSA:1.10.1160.10 237 315 3.4E-10 T 22-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 445 1.5E-109 T 22-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 PRINTS PR00987 Glutamyl-tRNA synthetase signature 21 32 3.7E-23 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 PRINTS PR00987 Glutamyl-tRNA synthetase signature 183 193 3.7E-23 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 PRINTS PR00987 Glutamyl-tRNA synthetase signature 199 207 3.7E-23 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 PRINTS PR00987 Glutamyl-tRNA synthetase signature 7 19 3.7E-23 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 PRINTS PR00987 Glutamyl-tRNA synthetase signature 36 49 3.7E-23 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 Gene3D G3DSA:3.40.50.620 3 68 1.9E-47 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 Gene3D G3DSA:3.40.50.620 185 234 1.9E-47 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 PANTHER PTHR11451:SF41 3 313 5.6E-72 T 22-04-2016 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 Gene3D G3DSA:1.10.10.350 372 446 7.1E-12 T 22-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 4 447 25.419 T 22-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 308 1.0E-73 T 22-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 PANTHER PTHR11451 3 313 5.6E-72 T 22-04-2016 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 10 21 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 SUPERFAMILY SSF48163 283 447 2.49E-29 T 22-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RMA_RS02465 9fb2b1aa8dada3aca3b0d17e2b39d642 447 SUPERFAMILY SSF52374 3 300 5.36E-86 T 22-04-2016 RMA_RS01130 27f54dbc4d4bfabebd71b455bf13d0f1 357 SMART SM00228 107 185 6.2E-6 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS01130 27f54dbc4d4bfabebd71b455bf13d0f1 357 Gene3D G3DSA:2.30.42.10 96 195 4.8E-18 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS01130 27f54dbc4d4bfabebd71b455bf13d0f1 357 SUPERFAMILY SSF50156 88 195 3.81E-17 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS01130 27f54dbc4d4bfabebd71b455bf13d0f1 357 PANTHER PTHR22939 130 357 1.3E-51 T 22-04-2016 RMA_RS01130 27f54dbc4d4bfabebd71b455bf13d0f1 357 Pfam PF02163 Peptidase family M50 7 343 2.3E-72 T 22-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 RMA_RS01130 27f54dbc4d4bfabebd71b455bf13d0f1 357 PANTHER PTHR22939:SF78 130 357 1.3E-51 T 22-04-2016 RMA_RS01130 27f54dbc4d4bfabebd71b455bf13d0f1 357 Pfam PF13180 PDZ domain 130 183 1.3E-8 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS01130 27f54dbc4d4bfabebd71b455bf13d0f1 357 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 127 356 9.2E-48 T 22-04-2016 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 Pfam PF03483 B3/4 domain 212 408 1.1E-52 T 22-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 SUPERFAMILY SSF50249 40 194 2.0E-36 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 811 42.303 T 22-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 Gene3D G3DSA:3.30.56.10 155 181 1.0E-21 T 22-04-2016 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 Gene3D G3DSA:3.30.56.10 1 38 1.0E-21 T 22-04-2016 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 Pfam PF01588 Putative tRNA binding domain 46 146 7.3E-22 T 22-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 PANTHER PTHR10947 307 817 7.7E-204 T 22-04-2016 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 PANTHER PTHR10947 2 289 7.7E-204 T 22-04-2016 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 Gene3D G3DSA:2.40.50.140 40 154 1.2E-36 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 PANTHER PTHR10947:SF0 307 817 7.7E-204 T 22-04-2016 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 PANTHER PTHR10947:SF0 2 289 7.7E-204 T 22-04-2016 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 SUPERFAMILY SSF56037 201 420 8.89E-58 T 22-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 SMART SM00873 212 408 5.8E-71 T 22-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 Gene3D G3DSA:3.30.56.20 424 497 5.1E-22 T 22-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 Gene3D G3DSA:3.50.40.10 199 416 9.7E-85 T 22-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 SUPERFAMILY SSF55681 489 708 1.59E-40 T 22-04-2016 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 Pfam PF03484 tRNA synthetase B5 domain 428 493 2.6E-17 T 22-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 SMART SM00896 724 817 3.4E-33 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 SUPERFAMILY SSF54991 722 817 8.5E-25 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 Gene3D G3DSA:3.30.930.10 513 709 4.4E-48 T 22-04-2016 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 817 3.4E-222 T 22-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 SUPERFAMILY SSF46955 426 497 1.65E-17 T 22-04-2016 IPR009061 Putative DNA-binding domain RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 SMART SM00874 425 493 1.8E-23 T 22-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 Gene3D G3DSA:3.30.70.380 726 817 6.7E-25 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RMA_RS03180 d9df433701964ad7bd11bda4f78b5512 818 Pfam PF03147 Ferredoxin-fold anticodon binding domain 724 817 4.7E-23 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RMA_RS06045 0164fea46e17920428ad5aedcb91c9c9 284 SUPERFAMILY SSF51261 85 278 4.71E-46 T 22-04-2016 IPR011055 Duplicated hybrid motif RMA_RS06045 0164fea46e17920428ad5aedcb91c9c9 284 Pfam PF01551 Peptidase family M23 180 274 6.7E-31 T 22-04-2016 IPR016047 Peptidase M23 RMA_RS06045 0164fea46e17920428ad5aedcb91c9c9 284 PANTHER PTHR21666 157 278 5.6E-32 T 22-04-2016 RMA_RS06045 0164fea46e17920428ad5aedcb91c9c9 284 Gene3D G3DSA:2.70.70.10 130 278 4.9E-43 T 22-04-2016 RMA_RS05590 0087fc87ac889063edec4ed906123706 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 7.1E-21 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RMA_RS05590 0087fc87ac889063edec4ed906123706 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 7.1E-21 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RMA_RS05590 0087fc87ac889063edec4ed906123706 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 7.1E-21 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RMA_RS05590 0087fc87ac889063edec4ed906123706 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 22-04-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 RMA_RS05590 0087fc87ac889063edec4ed906123706 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 5.5E-44 T 22-04-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 RMA_RS05590 0087fc87ac889063edec4ed906123706 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.203 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RMA_RS05590 0087fc87ac889063edec4ed906123706 92 Gene3D G3DSA:3.30.860.10 1 91 4.0E-40 T 22-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 RMA_RS05590 0087fc87ac889063edec4ed906123706 92 PIRSF PIRSF002144 1 92 2.3E-32 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RMA_RS05590 0087fc87ac889063edec4ed906123706 92 Pfam PF00203 Ribosomal protein S19 3 83 2.7E-35 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RMA_RS05590 0087fc87ac889063edec4ed906123706 92 SUPERFAMILY SSF54570 3 84 2.75E-34 T 22-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 RMA_RS05590 0087fc87ac889063edec4ed906123706 92 PANTHER PTHR11880 1 88 2.5E-45 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RMA_RS04720 7c213485a0282aab308ffb4df990e058 1892 Gene3D G3DSA:1.50.10.20 1434 1626 2.6E-15 T 22-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RMA_RS04720 7c213485a0282aab308ffb4df990e058 1892 PANTHER PTHR40094 71 1891 3.3E-150 T 22-04-2016 RMA_RS04720 7c213485a0282aab308ffb4df990e058 1892 Pfam PF01835 MG2 domain 647 746 1.9E-15 T 22-04-2016 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 RMA_RS04720 7c213485a0282aab308ffb4df990e058 1892 SUPERFAMILY SSF48239 1433 1617 6.5E-17 T 22-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RMA_RS04720 7c213485a0282aab308ffb4df990e058 1892 PANTHER PTHR40094:SF1 71 1891 3.3E-150 T 22-04-2016 RMA_RS04720 7c213485a0282aab308ffb4df990e058 1892 SMART SM01360 1219 1308 4.9E-21 T 22-04-2016 IPR001599 Alpha-2-macroglobulin GO:0004866 RMA_RS04720 7c213485a0282aab308ffb4df990e058 1892 SMART SM01359 1013 1152 8.0E-22 T 22-04-2016 IPR011625 Alpha-2-macroglobulin, N-terminal 2 RMA_RS04720 7c213485a0282aab308ffb4df990e058 1892 Pfam PF00207 Alpha-2-macroglobulin family 1220 1306 2.3E-11 T 22-04-2016 IPR001599 Alpha-2-macroglobulin GO:0004866 RMA_RS04720 7c213485a0282aab308ffb4df990e058 1892 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 538 638 4.8E-12 T 22-04-2016 IPR021868 Alpha-2-macroglobulin MG1 domain RMA_RS01700 e5b6d63b697e02dbf0e03aaed04250f6 245 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 118 230 1.7E-28 T 22-04-2016 IPR014162 Tol-Pal system, YbgF RMA_RS01700 e5b6d63b697e02dbf0e03aaed04250f6 245 Pfam PF13432 Tetratricopeptide repeat 121 186 1.0E-7 T 22-04-2016 RMA_RS01700 e5b6d63b697e02dbf0e03aaed04250f6 245 Gene3D G3DSA:1.25.40.10 121 223 1.6E-11 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS01700 e5b6d63b697e02dbf0e03aaed04250f6 245 SUPERFAMILY SSF48452 118 227 3.21E-12 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS01700 e5b6d63b697e02dbf0e03aaed04250f6 245 Pfam PF13174 Tetratricopeptide repeat 192 223 0.0034 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 550 568 8.3E-5 T 22-04-2016 RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 384 403 8.3E-5 T 22-04-2016 RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 Gene3D G3DSA:3.40.50.720 474 501 3.8E-5 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 Gene3D G3DSA:3.40.50.720 380 418 3.8E-5 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 Gene3D G3DSA:3.50.50.60 622 702 4.8E-15 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 Gene3D G3DSA:3.50.50.60 502 569 4.8E-15 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 SUPERFAMILY SSF63380 769 863 8.97E-12 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 Gene3D G3DSA:1.10.1060.10 218 234 1.5E-5 T 22-04-2016 RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 Gene3D G3DSA:1.10.1060.10 277 351 1.5E-5 T 22-04-2016 RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 Gene3D G3DSA:2.40.30.10 770 862 1.1E-12 T 22-04-2016 RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 SUPERFAMILY SSF51971 624 702 7.06E-20 T 22-04-2016 RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 SUPERFAMILY SSF51971 442 571 7.06E-20 T 22-04-2016 RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 SUPERFAMILY SSF51971 380 413 7.06E-20 T 22-04-2016 RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 382 709 2.5E-9 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 546 570 9.1E-5 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RMA_RS00025 f88971e70a0ebdad0a1e3e4f2ca99665 1012 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 383 405 9.1E-5 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 22-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 5 584 1.5E-238 T 22-04-2016 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 Gene3D G3DSA:3.10.20.30 2 54 5.4E-6 T 22-04-2016 IPR012675 Beta-grasp domain RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 83 121 7.1E-17 T 22-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 SUPERFAMILY SSF54292 1 74 1.38E-20 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 98 110 - T 22-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 PANTHER PTHR11615:SF115 3 313 3.6E-299 T 22-04-2016 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 PANTHER PTHR11615:SF115 351 668 3.6E-299 T 22-04-2016 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 Pfam PF00384 Molybdopterin oxidoreductase 271 585 8.0E-64 T 22-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 SUPERFAMILY SSF53706 213 614 7.13E-88 T 22-04-2016 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 145 155 - T 22-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 PANTHER PTHR11615 3 313 3.6E-299 T 22-04-2016 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 PANTHER PTHR11615 351 668 3.6E-299 T 22-04-2016 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 SUPERFAMILY SSF54862 75 211 4.6E-36 T 22-04-2016 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 Pfam PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal 624 660 3.5E-12 T 22-04-2016 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal GO:0016651|GO:0051536|GO:0055114 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 SMART SM00929 83 123 1.4E-20 T 22-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 Gene3D G3DSA:3.40.50.740 271 456 1.9E-42 T 22-04-2016 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 Gene3D G3DSA:3.40.50.740 513 616 1.9E-42 T 22-04-2016 RMA_RS06640 f12817207c383c0371259ee66d9ea7ab 672 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 2 76 1.2E-18 T 22-04-2016 RMA_RS00360 63e7449ec8c4bd3ef13dfec8dbb14b15 397 PANTHER PTHR11351 37 291 2.7E-64 T 22-04-2016 RMA_RS00360 63e7449ec8c4bd3ef13dfec8dbb14b15 397 PRINTS PR00075 Fatty acid desaturase family 1 signature 235 249 6.1E-15 T 22-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 RMA_RS00360 63e7449ec8c4bd3ef13dfec8dbb14b15 397 PRINTS PR00075 Fatty acid desaturase family 1 signature 193 214 6.1E-15 T 22-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 RMA_RS00360 63e7449ec8c4bd3ef13dfec8dbb14b15 397 PRINTS PR00075 Fatty acid desaturase family 1 signature 57 77 6.1E-15 T 22-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 RMA_RS00360 63e7449ec8c4bd3ef13dfec8dbb14b15 397 PRINTS PR00075 Fatty acid desaturase family 1 signature 94 123 6.1E-15 T 22-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 RMA_RS00360 63e7449ec8c4bd3ef13dfec8dbb14b15 397 Pfam PF00487 Fatty acid desaturase 50 259 9.4E-16 T 22-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 RMA_RS02955 9b653c1a594bf61d198116fe690ac30b 587 SUPERFAMILY SSF90123 18 334 5.1E-70 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RMA_RS02955 9b653c1a594bf61d198116fe690ac30b 587 ProSitePatterns PS00211 ABC transporters family signature. 484 498 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS02955 9b653c1a594bf61d198116fe690ac30b 587 Pfam PF00664 ABC transporter transmembrane region 33 297 5.2E-41 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RMA_RS02955 9b653c1a594bf61d198116fe690ac30b 587 SUPERFAMILY SSF52540 340 581 8.31E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02955 9b653c1a594bf61d198116fe690ac30b 587 Gene3D G3DSA:1.20.1560.10 21 336 1.7E-68 T 22-04-2016 RMA_RS02955 9b653c1a594bf61d198116fe690ac30b 587 Pfam PF00005 ABC transporter 364 512 2.2E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS02955 9b653c1a594bf61d198116fe690ac30b 587 SMART SM00382 372 558 3.2E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS02955 9b653c1a594bf61d198116fe690ac30b 587 PANTHER PTHR24221 16 581 3.1E-193 T 22-04-2016 RMA_RS02955 9b653c1a594bf61d198116fe690ac30b 587 Gene3D G3DSA:3.40.50.300 347 577 2.0E-77 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02310 6496872c3140967e5a361ca1892703d9 241 Pfam PF01618 MotA/TolQ/ExbB proton channel family 92 222 4.0E-41 T 22-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RMA_RS02310 6496872c3140967e5a361ca1892703d9 241 PANTHER PTHR30625:SF3 20 241 6.4E-58 T 22-04-2016 RMA_RS02310 6496872c3140967e5a361ca1892703d9 241 TIGRFAM TIGR02796 tolQ: protein TolQ 20 234 2.8E-78 T 22-04-2016 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 RMA_RS02310 6496872c3140967e5a361ca1892703d9 241 PANTHER PTHR30625 20 241 6.4E-58 T 22-04-2016 RMA_RS06190 5d6a922c3906fb84561c3d187060c1da 300 Pfam PF00561 alpha/beta hydrolase fold 76 282 6.0E-8 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RMA_RS06190 5d6a922c3906fb84561c3d187060c1da 300 SUPERFAMILY SSF53474 25 280 1.02E-27 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS06190 5d6a922c3906fb84561c3d187060c1da 300 Gene3D G3DSA:3.40.50.1820 48 132 1.3E-19 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS06190 5d6a922c3906fb84561c3d187060c1da 300 Gene3D G3DSA:3.40.50.1820 173 280 1.3E-19 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS06190 5d6a922c3906fb84561c3d187060c1da 300 PANTHER PTHR36837 28 287 5.4E-21 T 22-04-2016 RMA_RS05190 401bb12efe4674ffb15fad6b443c31e4 225 SUPERFAMILY SSF102114 37 123 3.14E-12 T 22-04-2016 RMA_RS05190 401bb12efe4674ffb15fad6b443c31e4 225 Pfam PF13394 4Fe-4S single cluster domain 39 124 2.0E-12 T 22-04-2016 RMA_RS05190 401bb12efe4674ffb15fad6b443c31e4 225 PIRSF PIRSF000370 16 225 3.4E-42 T 22-04-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 RMA_RS05190 401bb12efe4674ffb15fad6b443c31e4 225 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 18 225 36.085 T 22-04-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 RMA_RS05190 401bb12efe4674ffb15fad6b443c31e4 225 Pfam PF04055 Radical SAM superfamily 42 124 3.8E-10 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RMA_RS05190 401bb12efe4674ffb15fad6b443c31e4 225 PANTHER PTHR11228:SF6 17 190 1.7E-25 T 22-04-2016 RMA_RS05190 401bb12efe4674ffb15fad6b443c31e4 225 PANTHER PTHR11228 17 190 1.7E-25 T 22-04-2016 RMA_RS05190 401bb12efe4674ffb15fad6b443c31e4 225 Gene3D G3DSA:3.20.20.70 44 123 2.1E-12 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RMA_RS03075 3afe2266f25cab5ffb172a444fbddb9c 218 TIGRFAM TIGR00077 lspA: signal peptidase II 17 162 6.6E-35 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RMA_RS03075 3afe2266f25cab5ffb172a444fbddb9c 218 PANTHER PTHR33695 18 173 6.3E-41 T 22-04-2016 RMA_RS03075 3afe2266f25cab5ffb172a444fbddb9c 218 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 140 156 4.3E-15 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RMA_RS03075 3afe2266f25cab5ffb172a444fbddb9c 218 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 104 119 4.3E-15 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RMA_RS03075 3afe2266f25cab5ffb172a444fbddb9c 218 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 58 66 4.3E-15 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RMA_RS03075 3afe2266f25cab5ffb172a444fbddb9c 218 PANTHER PTHR33695:SF1 18 173 6.3E-41 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RMA_RS03075 3afe2266f25cab5ffb172a444fbddb9c 218 ProSitePatterns PS00855 Signal peptidases II signature. 107 119 - T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RMA_RS03075 3afe2266f25cab5ffb172a444fbddb9c 218 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 6 165 15.679 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RMA_RS03075 3afe2266f25cab5ffb172a444fbddb9c 218 Pfam PF01252 Signal peptidase (SPase) II 18 155 1.2E-34 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RMA_RS05435 1a789e8ad03f731d72687ef625e2d763 239 PANTHER PTHR11953:SF0 1 239 3.7E-73 T 22-04-2016 RMA_RS05435 1a789e8ad03f731d72687ef625e2d763 239 Pfam PF01138 3' exoribonuclease family, domain 1 10 139 7.9E-22 T 22-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RMA_RS05435 1a789e8ad03f731d72687ef625e2d763 239 PANTHER PTHR11953 1 239 3.7E-73 T 22-04-2016 RMA_RS05435 1a789e8ad03f731d72687ef625e2d763 239 Gene3D G3DSA:3.30.230.70 8 236 1.1E-27 T 22-04-2016 IPR027408 PNPase/RNase PH domain RMA_RS05435 1a789e8ad03f731d72687ef625e2d763 239 SUPERFAMILY SSF55666 154 236 5.89E-22 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RMA_RS05435 1a789e8ad03f731d72687ef625e2d763 239 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 6.4E-115 T 22-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 RMA_RS05435 1a789e8ad03f731d72687ef625e2d763 239 SUPERFAMILY SSF54211 1 181 1.16E-44 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS05435 1a789e8ad03f731d72687ef625e2d763 239 Pfam PF03725 3' exoribonuclease family, domain 2 159 222 3.4E-9 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RMA_RS05435 1a789e8ad03f731d72687ef625e2d763 239 Hamap MF_00564 Ribonuclease PH [rph]. 1 237 45.75 T 22-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 RMA_RS05435 1a789e8ad03f731d72687ef625e2d763 239 ProSitePatterns PS01277 Ribonuclease PH signature. 116 129 - T 22-04-2016 IPR018336 Ribonuclease PH, conserved site RMA_RS03570 e831f5679088c9f3dd91dc99e3e84773 345 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 174 211 3.9E-7 T 22-04-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal RMA_RS03570 e831f5679088c9f3dd91dc99e3e84773 345 PANTHER PTHR13767:SF2 5 252 2.9E-83 T 22-04-2016 RMA_RS03570 e831f5679088c9f3dd91dc99e3e84773 345 PANTHER PTHR13767 5 252 2.9E-83 T 22-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS03570 e831f5679088c9f3dd91dc99e3e84773 345 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 6 209 2.7E-64 T 22-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS03570 e831f5679088c9f3dd91dc99e3e84773 345 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 2 338 16.628 T 22-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS03570 e831f5679088c9f3dd91dc99e3e84773 345 SUPERFAMILY SSF55120 2 230 2.88E-71 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS03570 e831f5679088c9f3dd91dc99e3e84773 345 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 262 309 8.0E-26 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS03570 e831f5679088c9f3dd91dc99e3e84773 345 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 24 173 5.7E-51 T 22-04-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 RMA_RS05480 33562048562b8d467085de4489136cf1 90 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 89 5.0E-35 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05480 33562048562b8d467085de4489136cf1 90 PANTHER PTHR33398 1 86 5.1E-21 T 22-04-2016 RMA_RS05480 33562048562b8d467085de4489136cf1 90 Pfam PF01649 Ribosomal protein S20 2 84 3.6E-22 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05480 33562048562b8d467085de4489136cf1 90 SUPERFAMILY SSF46992 3 86 2.62E-24 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05480 33562048562b8d467085de4489136cf1 90 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 14.125 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05480 33562048562b8d467085de4489136cf1 90 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 2.8E-21 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05480 33562048562b8d467085de4489136cf1 90 Gene3D G3DSA:1.20.58.110 1 86 2.1E-25 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS01450 72b00b4590f79fca2fdfda071997297b 102 SUPERFAMILY SSF52833 7 91 1.79E-25 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS01450 72b00b4590f79fca2fdfda071997297b 102 Gene3D G3DSA:3.40.30.10 7 87 2.1E-26 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS01450 72b00b4590f79fca2fdfda071997297b 102 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 9 89 7.9E-35 T 22-04-2016 IPR011900 Glutaredoxin, GrxC GO:0045454 RMA_RS01450 72b00b4590f79fca2fdfda071997297b 102 PANTHER PTHR10168 9 91 1.9E-21 T 22-04-2016 RMA_RS01450 72b00b4590f79fca2fdfda071997297b 102 PRINTS PR00160 Glutaredoxin signature 53 66 1.4E-13 T 22-04-2016 IPR014025 Glutaredoxin subgroup RMA_RS01450 72b00b4590f79fca2fdfda071997297b 102 PRINTS PR00160 Glutaredoxin signature 67 80 1.4E-13 T 22-04-2016 IPR014025 Glutaredoxin subgroup RMA_RS01450 72b00b4590f79fca2fdfda071997297b 102 PRINTS PR00160 Glutaredoxin signature 9 27 1.4E-13 T 22-04-2016 IPR014025 Glutaredoxin subgroup RMA_RS01450 72b00b4590f79fca2fdfda071997297b 102 ProSitePatterns PS00195 Glutaredoxin active site. 11 27 - T 22-04-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 RMA_RS01450 72b00b4590f79fca2fdfda071997297b 102 Pfam PF00462 Glutaredoxin 9 70 9.6E-20 T 22-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 Pfam PF08264 Anticodon-binding domain of tRNA 386 474 7.7E-6 T 22-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 SUPERFAMILY SSF52374 2 345 2.33E-108 T 22-04-2016 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 PANTHER PTHR11946 2 508 3.4E-242 T 22-04-2016 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 PRINTS PR01041 Methionyl-tRNA synthetase signature 222 233 6.5E-34 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 PRINTS PR01041 Methionyl-tRNA synthetase signature 346 357 6.5E-34 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 PRINTS PR01041 Methionyl-tRNA synthetase signature 87 98 6.5E-34 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 PRINTS PR01041 Methionyl-tRNA synthetase signature 254 269 6.5E-34 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 PRINTS PR01041 Methionyl-tRNA synthetase signature 7 20 6.5E-34 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 PRINTS PR01041 Methionyl-tRNA synthetase signature 39 53 6.5E-34 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 Gene3D G3DSA:1.10.730.10 338 507 3.7E-45 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 PANTHER PTHR11946:SF1 2 508 3.4E-242 T 22-04-2016 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 SUPERFAMILY SSF47323 347 506 4.11E-37 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 151 506 3.0E-102 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 Pfam PF09334 tRNA synthetases class I (M) 5 139 1.1E-44 T 22-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 Pfam PF09334 tRNA synthetases class I (M) 149 358 2.1E-64 T 22-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 506 47.671 T 22-04-2016 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RMA_RS05830 12009ae1a3fb930776542e408032f070 508 Gene3D G3DSA:3.40.50.620 3 113 8.2E-76 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS05830 12009ae1a3fb930776542e408032f070 508 Gene3D G3DSA:3.40.50.620 224 334 8.2E-76 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS05830 12009ae1a3fb930776542e408032f070 508 Gene3D G3DSA:2.170.220.10 117 223 5.2E-43 T 22-04-2016 RMA_RS02060 02e1f3dd627402c4b5fc2df3320f54ba 179 Gene3D G3DSA:1.25.10.10 5 149 1.5E-10 T 22-04-2016 IPR011989 Armadillo-like helical RMA_RS02060 02e1f3dd627402c4b5fc2df3320f54ba 179 SUPERFAMILY SSF48371 6 163 1.61E-13 T 22-04-2016 IPR016024 Armadillo-type fold GO:0005488 RMA_RS02350 e998144b9bb849522e1687531398c19f 119 SUPERFAMILY SSF54197 2 109 1.7E-29 T 22-04-2016 IPR011146 HIT-like domain GO:0003824 RMA_RS02350 e998144b9bb849522e1687531398c19f 119 ProSitePatterns PS00892 HIT domain signature. 90 108 - T 22-04-2016 IPR019808 Histidine triad, conserved site RMA_RS02350 e998144b9bb849522e1687531398c19f 119 PANTHER PTHR23089:SF2 3 112 2.5E-36 T 22-04-2016 RMA_RS02350 e998144b9bb849522e1687531398c19f 119 Pfam PF01230 HIT domain 15 111 1.5E-21 T 22-04-2016 IPR001310 Histidine triad (HIT) protein RMA_RS02350 e998144b9bb849522e1687531398c19f 119 PRINTS PR00332 Histidine triad family signature 7 23 4.9E-18 T 22-04-2016 IPR001310 Histidine triad (HIT) protein RMA_RS02350 e998144b9bb849522e1687531398c19f 119 PRINTS PR00332 Histidine triad family signature 28 46 4.9E-18 T 22-04-2016 IPR001310 Histidine triad (HIT) protein RMA_RS02350 e998144b9bb849522e1687531398c19f 119 PRINTS PR00332 Histidine triad family signature 97 107 4.9E-18 T 22-04-2016 IPR001310 Histidine triad (HIT) protein RMA_RS02350 e998144b9bb849522e1687531398c19f 119 Gene3D G3DSA:3.30.428.10 3 111 2.9E-31 T 22-04-2016 IPR011146 HIT-like domain GO:0003824 RMA_RS02350 e998144b9bb849522e1687531398c19f 119 PANTHER PTHR23089 3 112 2.5E-36 T 22-04-2016 IPR001310 Histidine triad (HIT) protein RMA_RS00985 4ce2277bc3f8c604c2dae96a7862c432 192 Gene3D G3DSA:2.30.30.30 132 190 5.5E-26 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 RMA_RS00985 4ce2277bc3f8c604c2dae96a7862c432 192 SUPERFAMILY SSF82679 18 125 7.59E-33 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 RMA_RS00985 4ce2277bc3f8c604c2dae96a7862c432 192 SMART SM00738 17 125 1.0E-42 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 RMA_RS00985 4ce2277bc3f8c604c2dae96a7862c432 192 SUPERFAMILY SSF50104 137 190 8.53E-18 T 22-04-2016 IPR008991 Translation protein SH3-like domain RMA_RS00985 4ce2277bc3f8c604c2dae96a7862c432 192 PRINTS PR00338 Transcription termination factor NUSG signature 72 84 1.9E-18 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RMA_RS00985 4ce2277bc3f8c604c2dae96a7862c432 192 PRINTS PR00338 Transcription termination factor NUSG signature 167 183 1.9E-18 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RMA_RS00985 4ce2277bc3f8c604c2dae96a7862c432 192 PRINTS PR00338 Transcription termination factor NUSG signature 149 164 1.9E-18 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RMA_RS00985 4ce2277bc3f8c604c2dae96a7862c432 192 PANTHER PTHR30265 14 190 5.3E-57 T 22-04-2016 RMA_RS00985 4ce2277bc3f8c604c2dae96a7862c432 192 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 20 190 1.6E-67 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RMA_RS00985 4ce2277bc3f8c604c2dae96a7862c432 192 Pfam PF00467 KOW motif 140 168 4.6E-7 T 22-04-2016 IPR005824 KOW RMA_RS00985 4ce2277bc3f8c604c2dae96a7862c432 192 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 17 191 22.291 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RMA_RS00985 4ce2277bc3f8c604c2dae96a7862c432 192 ProSitePatterns PS01014 Transcription termination factor nusG signature. 174 183 - T 22-04-2016 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site RMA_RS00985 4ce2277bc3f8c604c2dae96a7862c432 192 Pfam PF02357 Transcription termination factor nusG 18 121 7.8E-24 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 RMA_RS00985 4ce2277bc3f8c604c2dae96a7862c432 192 SMART SM00739 137 164 4.5E-4 T 22-04-2016 IPR005824 KOW RMA_RS00985 4ce2277bc3f8c604c2dae96a7862c432 192 Gene3D G3DSA:3.30.70.940 18 126 4.5E-37 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 RMA_RS01785 9ff42fe24228bbd280af31cf7ff4fdb1 255 Pfam PF01066 CDP-alcohol phosphatidyltransferase 19 82 1.5E-15 T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RMA_RS01785 9ff42fe24228bbd280af31cf7ff4fdb1 255 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 60 82 - T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RMA_RS01785 9ff42fe24228bbd280af31cf7ff4fdb1 255 PANTHER PTHR15362 15 149 4.3E-26 T 22-04-2016 RMA_RS01785 9ff42fe24228bbd280af31cf7ff4fdb1 255 Pfam PF08009 CDP-alcohol phosphatidyltransferase 2 208 244 4.8E-8 T 22-04-2016 IPR012616 CDP-alcohol phosphatidyltransferase, C-terminal RMA_RS01785 9ff42fe24228bbd280af31cf7ff4fdb1 255 PANTHER PTHR15362:SF2 15 149 4.3E-26 T 22-04-2016 RMA_RS06740 b6d7c3ea9482a030138f4e2d2348cefd 170 Pfam PF06347 Bacterial SH3 domain 110 161 1.3E-7 T 22-04-2016 IPR010466 Protein of unknown function DUF1058 RMA_RS06740 b6d7c3ea9482a030138f4e2d2348cefd 170 Pfam PF06347 Bacterial SH3 domain 43 99 3.4E-20 T 22-04-2016 IPR010466 Protein of unknown function DUF1058 RMA_RS06740 b6d7c3ea9482a030138f4e2d2348cefd 170 SMART SM00287 37 100 4.7E-14 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type RMA_RS07165 043d48787daf818960d72e81629fcd76 611 SUPERFAMILY SSF118116 421 611 1.7E-52 T 22-04-2016 RMA_RS07165 043d48787daf818960d72e81629fcd76 611 PANTHER PTHR10073 3 609 5.0E-131 T 22-04-2016 RMA_RS07165 043d48787daf818960d72e81629fcd76 611 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 92 98 - T 22-04-2016 IPR014762 DNA mismatch repair, conserved site RMA_RS07165 043d48787daf818960d72e81629fcd76 611 Pfam PF08676 MutL C terminal dimerisation domain 422 569 5.6E-46 T 22-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RMA_RS07165 043d48787daf818960d72e81629fcd76 611 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 609 27.303 T 22-04-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 RMA_RS07165 043d48787daf818960d72e81629fcd76 611 Gene3D G3DSA:3.30.565.10 1 203 1.1E-66 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS07165 043d48787daf818960d72e81629fcd76 611 SMART SM01340 212 330 2.7E-52 T 22-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 RMA_RS07165 043d48787daf818960d72e81629fcd76 611 Gene3D G3DSA:3.30.230.10 204 329 1.2E-37 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RMA_RS07165 043d48787daf818960d72e81629fcd76 611 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 310 6.2E-92 T 22-04-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 RMA_RS07165 043d48787daf818960d72e81629fcd76 611 SUPERFAMILY SSF55874 1 201 7.49E-49 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS07165 043d48787daf818960d72e81629fcd76 611 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 213 329 3.1E-37 T 22-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 RMA_RS07165 043d48787daf818960d72e81629fcd76 611 SMART SM00853 425 569 1.2E-43 T 22-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RMA_RS07165 043d48787daf818960d72e81629fcd76 611 SUPERFAMILY SSF54211 189 329 6.83E-36 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS07165 043d48787daf818960d72e81629fcd76 611 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 124 4.3E-12 T 22-04-2016 RMA_RS01165 7ee86bd4364c9f9162dfc22f2d4c3dc0 243 Gene3D G3DSA:3.40.1280.10 77 235 4.0E-47 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RMA_RS01165 7ee86bd4364c9f9162dfc22f2d4c3dc0 243 PANTHER PTHR30027:SF3 1 242 1.3E-55 T 22-04-2016 RMA_RS01165 7ee86bd4364c9f9162dfc22f2d4c3dc0 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 3 233 7.6E-49 T 22-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RMA_RS01165 7ee86bd4364c9f9162dfc22f2d4c3dc0 243 PIRSF PIRSF015601 2 239 1.0E-67 T 22-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RMA_RS01165 7ee86bd4364c9f9162dfc22f2d4c3dc0 243 PANTHER PTHR30027 1 242 1.3E-55 T 22-04-2016 RMA_RS01165 7ee86bd4364c9f9162dfc22f2d4c3dc0 243 SUPERFAMILY SSF75217 76 233 9.94E-38 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases RMA_RS01165 7ee86bd4364c9f9162dfc22f2d4c3dc0 243 Pfam PF04452 RNA methyltransferase 19 230 8.7E-55 T 22-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RMA_RS01165 7ee86bd4364c9f9162dfc22f2d4c3dc0 243 Gene3D G3DSA:2.40.240.20 1 71 4.7E-22 T 22-04-2016 RMA_RS01165 7ee86bd4364c9f9162dfc22f2d4c3dc0 243 SUPERFAMILY SSF88697 3 70 8.2E-16 T 22-04-2016 IPR015947 PUA-like domain RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 SUPERFAMILY SSF55874 13 223 3.8E-70 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 Gene3D G3DSA:3.40.50.670 722 787 8.3E-90 T 22-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 Gene3D G3DSA:3.40.50.670 413 558 8.3E-90 T 22-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 733 794 8.8E-27 T 22-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 10 805 112.045 T 22-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 Pfam PF01751 Toprim domain 428 539 2.5E-18 T 22-04-2016 IPR006171 Toprim domain RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR01159 DNA gyrase subunit B signature 189 204 7.7E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR01159 DNA gyrase subunit B signature 479 488 7.7E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR01159 DNA gyrase subunit B signature 204 217 7.7E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR01159 DNA gyrase subunit B signature 774 790 7.7E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR01159 DNA gyrase subunit B signature 13 23 7.7E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR01159 DNA gyrase subunit B signature 253 271 7.7E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR01159 DNA gyrase subunit B signature 321 337 7.7E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR01159 DNA gyrase subunit B signature 369 383 7.7E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR01159 DNA gyrase subunit B signature 230 252 7.7E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR01159 DNA gyrase subunit B signature 758 770 7.7E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR01159 DNA gyrase subunit B signature 383 403 7.7E-68 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 Gene3D G3DSA:3.30.230.10 230 401 1.2E-65 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PANTHER PTHR10169 1 561 5.9E-269 T 22-04-2016 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PANTHER PTHR10169 722 805 5.9E-269 T 22-04-2016 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR00418 DNA topoisomerase II family signature 78 91 9.4E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR00418 DNA topoisomerase II family signature 533 545 9.4E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR00418 DNA topoisomerase II family signature 121 135 9.4E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR00418 DNA topoisomerase II family signature 429 443 9.4E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR00418 DNA topoisomerase II family signature 513 530 9.4E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR00418 DNA topoisomerase II family signature 495 511 9.4E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR00418 DNA topoisomerase II family signature 43 58 9.4E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR00418 DNA topoisomerase II family signature 737 753 9.4E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 PRINTS PR00418 DNA topoisomerase II family signature 279 292 9.4E-72 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 SMART SM00433 43 798 1.6E-248 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 SMART SM00387 39 184 9.3E-29 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 Pfam PF00204 DNA gyrase B 231 399 1.8E-54 T 22-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 SUPERFAMILY SSF56719 403 568 1.02E-80 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 SUPERFAMILY SSF56719 731 797 1.02E-80 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 ProSitePatterns PS00177 DNA topoisomerase II signature. 431 439 - T 22-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 Gene3D G3DSA:3.30.565.10 23 222 2.6E-86 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 SUPERFAMILY SSF54211 231 400 1.35E-52 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 13 805 4.0E-300 T 22-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RMA_RS04960 67c57eb3cb3b22c775a9ea6fe16815ee 805 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 39 182 3.4E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS01680 aa8dc4ea973ab231710b1fcaa3426122 573 SUPERFAMILY SSF48403 454 568 5.91E-9 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain RMA_RS01680 aa8dc4ea973ab231710b1fcaa3426122 573 Gene3D G3DSA:1.25.40.20 448 568 1.6E-10 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain RMA_RS04090 0f7164ddc32bec11681c2788691730bc 68 Gene3D G3DSA:3.40.630.30 19 45 3.3E-4 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase RMA_RS04935 12f65f39160020a713bae99609b6c588 906 PRINTS PR00906 SecA protein signature 62 86 1.7E-66 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 PRINTS PR00906 SecA protein signature 326 348 1.7E-66 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 PRINTS PR00906 SecA protein signature 363 380 1.7E-66 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 PRINTS PR00906 SecA protein signature 169 189 1.7E-66 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 PRINTS PR00906 SecA protein signature 100 114 1.7E-66 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 PRINTS PR00906 SecA protein signature 116 126 1.7E-66 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 PRINTS PR00906 SecA protein signature 400 413 1.7E-66 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 Gene3D G3DSA:3.40.50.300 3 227 9.5E-125 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04935 12f65f39160020a713bae99609b6c588 906 Gene3D G3DSA:3.40.50.300 356 402 9.5E-125 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04935 12f65f39160020a713bae99609b6c588 906 Pfam PF02810 SEC-C motif 886 903 1.6E-9 T 22-04-2016 IPR004027 SEC-C motif RMA_RS04935 12f65f39160020a713bae99609b6c588 906 PANTHER PTHR30612 539 906 0.0 T 22-04-2016 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 PANTHER PTHR30612 1 507 0.0 T 22-04-2016 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 SUPERFAMILY SSF81886 882 894 9.42E-74 T 22-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 SUPERFAMILY SSF81886 609 827 9.42E-74 T 22-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 Pfam PF07516 SecA Wing and Scaffold domain 606 815 4.1E-60 T 22-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 Gene3D G3DSA:3.90.1440.10 230 355 3.0E-44 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 Pfam PF01043 SecA preprotein cross-linking domain 231 345 3.7E-35 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 27 804 0.0 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 SUPERFAMILY SSF52540 355 402 6.76E-85 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04935 12f65f39160020a713bae99609b6c588 906 SUPERFAMILY SSF52540 3 227 6.76E-85 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04935 12f65f39160020a713bae99609b6c588 906 ProSitePatterns PS01312 SecA family signature. 487 502 - T 22-04-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 Gene3D G3DSA:1.10.3060.10 637 817 4.2E-52 T 22-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 Gene3D G3DSA:3.40.50.300 405 608 4.9E-90 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04935 12f65f39160020a713bae99609b6c588 906 SUPERFAMILY SSF81767 226 355 1.57E-41 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 SMART SM00957 5 389 4.2E-287 T 22-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 SMART SM00958 227 345 1.4E-67 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 Hamap MF_01382 Protein translocase subunit SecA [secA]. 4 819 19.56 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RMA_RS04935 12f65f39160020a713bae99609b6c588 906 SUPERFAMILY SSF52540 405 607 1.31E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04935 12f65f39160020a713bae99609b6c588 906 Pfam PF07517 SecA DEAD-like domain 5 389 2.6E-129 T 22-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RMA_RS03640 d99c0be99a9178e4227ab8ae310e39f4 222 PANTHER PTHR11260:SF286 1 206 6.9E-131 T 22-04-2016 RMA_RS03640 d99c0be99a9178e4227ab8ae310e39f4 222 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 76 2.9E-9 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RMA_RS03640 d99c0be99a9178e4227ab8ae310e39f4 222 SUPERFAMILY SSF52833 2 103 3.69E-15 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS03640 d99c0be99a9178e4227ab8ae310e39f4 222 Gene3D G3DSA:3.40.30.10 3 96 5.2E-17 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS03640 d99c0be99a9178e4227ab8ae310e39f4 222 Pfam PF00043 Glutathione S-transferase, C-terminal domain 125 198 1.6E-7 T 22-04-2016 IPR004046 Glutathione S-transferase, C-terminal RMA_RS03640 d99c0be99a9178e4227ab8ae310e39f4 222 SUPERFAMILY SSF47616 70 216 4.73E-23 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RMA_RS03640 d99c0be99a9178e4227ab8ae310e39f4 222 PANTHER PTHR11260 1 206 6.9E-131 T 22-04-2016 RMA_RS03640 d99c0be99a9178e4227ab8ae310e39f4 222 Gene3D G3DSA:1.20.1050.10 97 218 6.2E-30 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RMA_RS04160 a671c9093d5165c6f1b0ce9eb23b190b 41 SUPERFAMILY SSF57840 1 41 2.88E-11 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS04160 a671c9093d5165c6f1b0ce9eb23b190b 41 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 16.136 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS04160 a671c9093d5165c6f1b0ce9eb23b190b 41 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS04160 a671c9093d5165c6f1b0ce9eb23b190b 41 PANTHER PTHR18804:SF11 1 41 2.3E-13 T 22-04-2016 RMA_RS04160 a671c9093d5165c6f1b0ce9eb23b190b 41 PANTHER PTHR18804 1 41 2.3E-13 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS04160 a671c9093d5165c6f1b0ce9eb23b190b 41 Pfam PF00444 Ribosomal protein L36 1 41 3.3E-14 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS01925 4caef9c907d59c160bd3dac35a58a3f5 483 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 228 247 - T 22-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RMA_RS01925 4caef9c907d59c160bd3dac35a58a3f5 483 PANTHER PTHR11835:SF43 6 349 2.1E-245 T 22-04-2016 RMA_RS01925 4caef9c907d59c160bd3dac35a58a3f5 483 TIGRFAM TIGR02924 ICDH_alpha: isocitrate dehydrogenase 5 477 5.5E-246 T 22-04-2016 IPR014273 Isocitrate dehydrogenase, alphaproteobacteria-type GO:0004450|GO:0006097|GO:0006099|GO:0046872|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RMA_RS01925 4caef9c907d59c160bd3dac35a58a3f5 483 PANTHER PTHR11835 6 349 2.1E-245 T 22-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RMA_RS01925 4caef9c907d59c160bd3dac35a58a3f5 483 SUPERFAMILY SSF53659 5 341 4.32E-115 T 22-04-2016 RMA_RS01925 4caef9c907d59c160bd3dac35a58a3f5 483 Gene3D G3DSA:3.40.718.10 5 353 1.2E-123 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RMA_RS01925 4caef9c907d59c160bd3dac35a58a3f5 483 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 337 8.1E-96 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RMA_RS01925 4caef9c907d59c160bd3dac35a58a3f5 483 SMART SM01329 6 337 1.2E-149 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RMA_RS02625 b468f5abf6bb7468a2c7ad405ce4cc2c 80 Gene3D G3DSA:1.10.287.1040 9 73 1.7E-21 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RMA_RS02625 b468f5abf6bb7468a2c7ad405ce4cc2c 80 PIRSF PIRSF006488 1 79 4.3E-23 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RMA_RS02625 b468f5abf6bb7468a2c7ad405ce4cc2c 80 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 12 72 15.326 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RMA_RS02625 b468f5abf6bb7468a2c7ad405ce4cc2c 80 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 12 66 4.3E-22 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RMA_RS02625 b468f5abf6bb7468a2c7ad405ce4cc2c 80 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 53 7.0E-21 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RMA_RS02625 b468f5abf6bb7468a2c7ad405ce4cc2c 80 PANTHER PTHR34137 1 67 4.0E-17 T 22-04-2016 RMA_RS02625 b468f5abf6bb7468a2c7ad405ce4cc2c 80 Pfam PF02609 Exonuclease VII small subunit 13 64 4.7E-18 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RMA_RS02625 b468f5abf6bb7468a2c7ad405ce4cc2c 80 SUPERFAMILY SSF116842 9 68 8.11E-19 T 22-04-2016 RMA_RS05180 4ddd0b05afcc710b6d0b9cf5d9b559dd 203 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 7 183 1.9E-63 T 22-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RMA_RS05180 4ddd0b05afcc710b6d0b9cf5d9b559dd 203 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 5 97 21.312 T 22-04-2016 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RMA_RS05180 4ddd0b05afcc710b6d0b9cf5d9b559dd 203 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 5 94 3.0E-37 T 22-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RMA_RS05180 4ddd0b05afcc710b6d0b9cf5d9b559dd 203 Gene3D G3DSA:2.40.240.10 6 95 1.2E-32 T 22-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 RMA_RS05180 4ddd0b05afcc710b6d0b9cf5d9b559dd 203 Gene3D G3DSA:2.170.120.20 100 192 6.6E-23 T 22-04-2016 IPR020057 Ribosomal protein L25, beta domain RMA_RS05180 4ddd0b05afcc710b6d0b9cf5d9b559dd 203 Pfam PF01386 Ribosomal L25p family 7 94 5.4E-26 T 22-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RMA_RS05180 4ddd0b05afcc710b6d0b9cf5d9b559dd 203 PANTHER PTHR33284 4 201 7.1E-53 T 22-04-2016 RMA_RS05180 4ddd0b05afcc710b6d0b9cf5d9b559dd 203 SUPERFAMILY SSF50715 4 192 8.02E-53 T 22-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 RMA_RS05180 4ddd0b05afcc710b6d0b9cf5d9b559dd 203 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 103 183 2.3E-20 T 22-04-2016 IPR020057 Ribosomal protein L25, beta domain RMA_RS05180 4ddd0b05afcc710b6d0b9cf5d9b559dd 203 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 5 184 25.954 T 22-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RMA_RS03005 34a987746720ae0f742bd1fc3000340e 219 Pfam PF08534 Redoxin 44 175 1.7E-19 T 22-04-2016 IPR013740 Redoxin GO:0016491 RMA_RS03005 34a987746720ae0f742bd1fc3000340e 219 Gene3D G3DSA:3.40.30.10 8 186 2.8E-35 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS03005 34a987746720ae0f742bd1fc3000340e 219 SUPERFAMILY SSF52833 33 179 5.05E-31 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS03005 34a987746720ae0f742bd1fc3000340e 219 PANTHER PTHR10681 53 167 9.7E-16 T 22-04-2016 RMA_RS01000 b686c9cf3e1b9dcd5b96bba942a74c89 169 ProSitePatterns PS01109 Ribosomal protein L10 signature. 6 40 - T 22-04-2016 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS01000 b686c9cf3e1b9dcd5b96bba942a74c89 169 SUPERFAMILY SSF160369 3 168 1.44E-51 T 22-04-2016 RMA_RS01000 b686c9cf3e1b9dcd5b96bba942a74c89 169 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 158 25.619 T 22-04-2016 IPR022973 Ribosomal protein L10 RMA_RS01000 b686c9cf3e1b9dcd5b96bba942a74c89 169 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 15 154 1.0E-8 T 22-04-2016 RMA_RS01000 b686c9cf3e1b9dcd5b96bba942a74c89 169 PANTHER PTHR11560 3 168 2.6E-52 T 22-04-2016 RMA_RS01000 b686c9cf3e1b9dcd5b96bba942a74c89 169 Pfam PF00466 Ribosomal protein L10 3 98 5.8E-25 T 22-04-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 RMA_RS02635 0474eccbb55e0f16d4c9d93bcd595d71 94 Pfam PF12441 CopG antitoxin of type II toxin-antitoxin system 36 88 8.8E-7 T 22-04-2016 IPR022148 CopG antitoxin RMA_RS00510 621eb6ea0408767f6303c192950ef9aa 555 PANTHER PTHR19211 4 554 9.0E-302 T 22-04-2016 RMA_RS00510 621eb6ea0408767f6303c192950ef9aa 555 SUPERFAMILY SSF52540 303 518 3.59E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00510 621eb6ea0408767f6303c192950ef9aa 555 PANTHER PTHR19211:SF7 4 554 9.0E-302 T 22-04-2016 RMA_RS00510 621eb6ea0408767f6303c192950ef9aa 555 Pfam PF00005 ABC transporter 341 475 4.5E-25 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS00510 621eb6ea0408767f6303c192950ef9aa 555 Pfam PF00005 ABC transporter 22 193 1.8E-24 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS00510 621eb6ea0408767f6303c192950ef9aa 555 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS00510 621eb6ea0408767f6303c192950ef9aa 555 SMART SM00382 350 523 8.9E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS00510 621eb6ea0408767f6303c192950ef9aa 555 SMART SM00382 31 238 2.5E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS00510 621eb6ea0408767f6303c192950ef9aa 555 Pfam PF12848 ABC transporter 232 304 7.4E-9 T 22-04-2016 IPR032781 ABC-transporter extension domain RMA_RS00510 621eb6ea0408767f6303c192950ef9aa 555 Gene3D G3DSA:3.40.50.300 9 277 4.3E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00510 621eb6ea0408767f6303c192950ef9aa 555 Gene3D G3DSA:3.40.50.300 278 303 6.2E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00510 621eb6ea0408767f6303c192950ef9aa 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 4 554 6.2E-276 T 22-04-2016 IPR022374 ABC transporter, ATP-binding protein, ChvD RMA_RS00510 621eb6ea0408767f6303c192950ef9aa 555 Gene3D G3DSA:3.40.50.300 325 533 6.3E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00510 621eb6ea0408767f6303c192950ef9aa 555 SUPERFAMILY SSF52540 9 242 8.04E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 ProSitePatterns PS00211 ABC transporters family signature. 499 513 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 ProSitePatterns PS00211 ABC transporters family signature. 842 856 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 Gene3D G3DSA:1.10.8.280 298 416 5.8E-30 T 22-04-2016 RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 Gene3D G3DSA:1.20.1580.10 417 488 6.4E-49 T 22-04-2016 RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 Gene3D G3DSA:1.20.1580.10 261 294 6.4E-49 T 22-04-2016 RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 Gene3D G3DSA:1.20.1580.10 93 131 6.4E-49 T 22-04-2016 RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 Hamap MF_00205 UvrABC system protein A [uvrA]. 3 952 22.678 T 22-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 PANTHER PTHR32282:SF2 2 952 0.0 T 22-04-2016 RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 Gene3D G3DSA:3.30.1490.20 202 241 1.8E-21 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 Gene3D G3DSA:3.30.1490.20 132 155 1.8E-21 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 Gene3D G3DSA:1.20.1580.10 706 832 2.7E-51 T 22-04-2016 RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 Gene3D G3DSA:3.40.50.300 617 684 7.6E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 Gene3D G3DSA:3.40.50.300 489 608 6.0E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 Gene3D G3DSA:3.40.50.300 5 53 6.0E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 Gene3D G3DSA:3.40.50.300 833 951 7.6E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 6 936 0.0 T 22-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 PANTHER PTHR32282 2 952 0.0 T 22-04-2016 RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 Pfam PF00005 ABC transporter 818 872 7.0E-5 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 SUPERFAMILY SSF52540 634 922 4.34E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 SUPERFAMILY SSF52540 443 581 2.71E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS07010 d8374ab8505a0c664c0a25570d5f7a75 953 SUPERFAMILY SSF52540 6 206 2.71E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04825 3104b0eab5531e23e696584109eae721 307 SUPERFAMILY SSF81799 109 207 9.55E-35 T 22-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RMA_RS04825 3104b0eab5531e23e696584109eae721 307 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 3 303 7.1E-102 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RMA_RS04825 3104b0eab5531e23e696584109eae721 307 PANTHER PTHR11265 1 307 7.4E-139 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RMA_RS04825 3104b0eab5531e23e696584109eae721 307 Gene3D G3DSA:1.10.150.170 108 209 1.3E-34 T 22-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RMA_RS04825 3104b0eab5531e23e696584109eae721 307 SUPERFAMILY SSF53335 5 108 1.28E-46 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS04825 3104b0eab5531e23e696584109eae721 307 SUPERFAMILY SSF53335 207 303 1.28E-46 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS04825 3104b0eab5531e23e696584109eae721 307 PIRSF PIRSF004486 1 306 2.3E-113 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RMA_RS04825 3104b0eab5531e23e696584109eae721 307 Pfam PF01795 MraW methylase family 4 303 5.5E-100 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RMA_RS04825 3104b0eab5531e23e696584109eae721 307 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 5 305 35.797 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RMA_RS04825 3104b0eab5531e23e696584109eae721 307 PANTHER PTHR11265:SF0 1 307 7.4E-139 T 22-04-2016 RMA_RS04825 3104b0eab5531e23e696584109eae721 307 Gene3D G3DSA:3.40.50.150 5 105 1.2E-53 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS04825 3104b0eab5531e23e696584109eae721 307 Gene3D G3DSA:3.40.50.150 210 305 1.2E-53 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS06635 398e67bb0e396e48555830fa960eb50b 339 PANTHER PTHR11432:SF3 7 338 2.0E-191 T 22-04-2016 RMA_RS06635 398e67bb0e396e48555830fa960eb50b 339 PANTHER PTHR11432 7 338 2.0E-191 T 22-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RMA_RS06635 398e67bb0e396e48555830fa960eb50b 339 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 57 72 - T 22-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 RMA_RS06635 398e67bb0e396e48555830fa960eb50b 339 Pfam PF00146 NADH dehydrogenase 18 326 7.4E-132 T 22-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RMA_RS06635 398e67bb0e396e48555830fa960eb50b 339 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 214 227 - T 22-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 RMA_RS06635 398e67bb0e396e48555830fa960eb50b 339 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 11 333 25.829 T 22-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RMA_RS00235 94a590785cd9aed48179e0c55c6b56c2 117 TIGRFAM TIGR00526 folB_dom: FolB domain 3 111 8.8E-19 T 22-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RMA_RS00235 94a590785cd9aed48179e0c55c6b56c2 117 SUPERFAMILY SSF55620 3 111 1.0E-21 T 22-04-2016 RMA_RS00235 94a590785cd9aed48179e0c55c6b56c2 117 SMART SM00905 2 113 9.0E-13 T 22-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RMA_RS00235 94a590785cd9aed48179e0c55c6b56c2 117 Pfam PF02152 Dihydroneopterin aldolase 3 109 4.2E-18 T 22-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RMA_RS00235 94a590785cd9aed48179e0c55c6b56c2 117 Gene3D G3DSA:3.30.1130.10 3 111 3.7E-20 T 22-04-2016 RMA_RS00550 1c4b5a664cf1e02bf89dbd2d4026395f 110 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 91 108 - T 22-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site RMA_RS00550 1c4b5a664cf1e02bf89dbd2d4026395f 110 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 110 7.0E-34 T 22-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RMA_RS00550 1c4b5a664cf1e02bf89dbd2d4026395f 110 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 106 1.7E-16 T 22-04-2016 IPR000361 FeS cluster biogenesis RMA_RS00550 1c4b5a664cf1e02bf89dbd2d4026395f 110 PANTHER PTHR10072 3 110 1.1E-33 T 22-04-2016 RMA_RS00550 1c4b5a664cf1e02bf89dbd2d4026395f 110 Gene3D G3DSA:2.60.300.12 2 96 3.3E-25 T 22-04-2016 IPR000361 FeS cluster biogenesis RMA_RS00550 1c4b5a664cf1e02bf89dbd2d4026395f 110 SUPERFAMILY SSF89360 2 99 3.27E-25 T 22-04-2016 IPR000361 FeS cluster biogenesis RMA_RS06630 2ee14eb3f6a68ac2e78b62ee8937ddd0 159 Pfam PF12838 4Fe-4S dicluster domain 59 113 1.9E-13 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RMA_RS06630 2ee14eb3f6a68ac2e78b62ee8937ddd0 159 PANTHER PTHR10849 8 159 6.6E-102 T 22-04-2016 RMA_RS06630 2ee14eb3f6a68ac2e78b62ee8937ddd0 159 Gene3D G3DSA:1.10.1060.10 12 124 5.7E-23 T 22-04-2016 RMA_RS06630 2ee14eb3f6a68ac2e78b62ee8937ddd0 159 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 7 143 28.671 T 22-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 RMA_RS06630 2ee14eb3f6a68ac2e78b62ee8937ddd0 159 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 60 71 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RMA_RS06630 2ee14eb3f6a68ac2e78b62ee8937ddd0 159 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RMA_RS06630 2ee14eb3f6a68ac2e78b62ee8937ddd0 159 PANTHER PTHR10849:SF16 8 159 6.6E-102 T 22-04-2016 RMA_RS06630 2ee14eb3f6a68ac2e78b62ee8937ddd0 159 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 16 137 5.7E-50 T 22-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 RMA_RS06630 2ee14eb3f6a68ac2e78b62ee8937ddd0 159 SUPERFAMILY SSF54862 33 142 7.11E-28 T 22-04-2016 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 5 314 5.7E-102 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 PANTHER PTHR11735 1 342 4.8E-145 T 22-04-2016 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 Gene3D G3DSA:3.30.420.40 3 159 1.1E-39 T 22-04-2016 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 4 321 3.0E-123 T 22-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 SUPERFAMILY SSF53067 102 317 4.03E-45 T 22-04-2016 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 Pfam PF00814 Glycoprotease family 24 315 9.8E-94 T 22-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 PANTHER PTHR11735:SF6 1 342 4.8E-145 T 22-04-2016 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 77 97 8.9E-45 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 5 18 8.9E-45 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 8.9E-45 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 8.9E-45 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 98 117 8.9E-45 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 271 280 8.9E-45 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 2 339 60.944 T 22-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 SUPERFAMILY SSF53067 3 124 1.99E-27 T 22-04-2016 RMA_RS00355 ac6f51619a14006a42f939bfc51744e4 344 ProSitePatterns PS01016 Glycoprotease family signature. 97 117 - T 22-04-2016 IPR017860 Peptidase M22, conserved site KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RMA_RS04615 fb8f0bc60efa617eecf33f1fb835d9fc 251 Gene3D G3DSA:3.40.50.150 93 179 6.9E-5 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS04615 fb8f0bc60efa617eecf33f1fb835d9fc 251 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 5 238 2.1E-59 T 22-04-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 RMA_RS04615 fb8f0bc60efa617eecf33f1fb835d9fc 251 SUPERFAMILY SSF53335 56 247 9.41E-21 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS04615 fb8f0bc60efa617eecf33f1fb835d9fc 251 PIRSF PIRSF005578 1 249 1.2E-86 T 22-04-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 RMA_RS04615 fb8f0bc60efa617eecf33f1fb835d9fc 251 PANTHER PTHR32319:SF0 1 248 3.8E-97 T 22-04-2016 RMA_RS04615 fb8f0bc60efa617eecf33f1fb835d9fc 251 Pfam PF01728 FtsJ-like methyltransferase 61 244 4.8E-25 T 22-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 RMA_RS04615 fb8f0bc60efa617eecf33f1fb835d9fc 251 PANTHER PTHR32319 1 248 3.8E-97 T 22-04-2016 RMA_RS04615 fb8f0bc60efa617eecf33f1fb835d9fc 251 SMART SM00363 4 70 0.0017 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RMA_RS04615 fb8f0bc60efa617eecf33f1fb835d9fc 251 SUPERFAMILY SSF55174 2 50 9.57E-6 T 22-04-2016 RMA_RS04615 fb8f0bc60efa617eecf33f1fb835d9fc 251 Gene3D G3DSA:3.10.290.10 5 92 1.8E-14 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RMA_RS06105 ad44e55f2139f34bce51c8cda1f457f7 270 PANTHER PTHR39962 5 267 3.5E-52 T 22-04-2016 RMA_RS06105 ad44e55f2139f34bce51c8cda1f457f7 270 Pfam PF06230 Protein of unknown function (DUF1009) 57 267 9.6E-61 T 22-04-2016 IPR010415 Protein of unknown function DUF1009 RMA_RS06105 ad44e55f2139f34bce51c8cda1f457f7 270 PANTHER PTHR39962:SF1 5 267 3.5E-52 T 22-04-2016 RMA_RS03015 4ed83384479d6eb0a0733881ce981239 148 PANTHER PTHR11241 18 148 6.2E-51 T 22-04-2016 RMA_RS03015 4ed83384479d6eb0a0733881ce981239 148 SUPERFAMILY SSF51283 12 148 2.22E-52 T 22-04-2016 IPR029054 dUTPase-like RMA_RS03015 4ed83384479d6eb0a0733881ce981239 148 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 4 148 33.648 T 22-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 RMA_RS03015 4ed83384479d6eb0a0733881ce981239 148 Pfam PF00692 dUTPase 17 147 9.1E-34 T 22-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 RMA_RS03015 4ed83384479d6eb0a0733881ce981239 148 TIGRFAM TIGR00576 dut: dUTP diphosphatase 7 147 7.9E-56 T 22-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 RMA_RS03015 4ed83384479d6eb0a0733881ce981239 148 Gene3D G3DSA:2.70.40.10 4 148 2.3E-57 T 22-04-2016 IPR029054 dUTPase-like RMA_RS03770 4e60d9595749127e47bb0d9dc1df3934 80 Gene3D G3DSA:4.10.520.10 3 58 3.9E-14 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RMA_RS03770 4e60d9595749127e47bb0d9dc1df3934 80 SUPERFAMILY SSF47729 2 59 7.21E-13 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RMA_RS03770 4e60d9595749127e47bb0d9dc1df3934 80 Pfam PF00216 Bacterial DNA-binding protein 3 58 6.7E-13 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RMA_RS03770 4e60d9595749127e47bb0d9dc1df3934 80 SMART SM00411 2 79 4.2E-11 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RMA_RS03770 4e60d9595749127e47bb0d9dc1df3934 80 PANTHER PTHR33175 2 58 6.1E-13 T 22-04-2016 RMA_RS06250 04bac08059042a2f5d7703c482b7a535 210 Gene3D G3DSA:1.10.1670.10 123 206 1.9E-35 T 22-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RMA_RS06250 04bac08059042a2f5d7703c482b7a535 210 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 8.9E-6 T 22-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 RMA_RS06250 04bac08059042a2f5d7703c482b7a535 210 TIGRFAM TIGR01083 nth: endonuclease III 4 194 4.6E-88 T 22-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RMA_RS06250 04bac08059042a2f5d7703c482b7a535 210 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.774 T 22-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RMA_RS06250 04bac08059042a2f5d7703c482b7a535 210 PIRSF PIRSF001435 1 209 1.1E-50 T 22-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RMA_RS06250 04bac08059042a2f5d7703c482b7a535 210 PANTHER PTHR10359:SF18 1 206 2.2E-82 T 22-04-2016 RMA_RS06250 04bac08059042a2f5d7703c482b7a535 210 PANTHER PTHR10359 1 206 2.2E-82 T 22-04-2016 RMA_RS06250 04bac08059042a2f5d7703c482b7a535 210 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 22-04-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 RMA_RS06250 04bac08059042a2f5d7703c482b7a535 210 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 167 3.1E-23 T 22-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RMA_RS06250 04bac08059042a2f5d7703c482b7a535 210 SUPERFAMILY SSF48150 4 208 1.88E-71 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RMA_RS06250 04bac08059042a2f5d7703c482b7a535 210 Gene3D G3DSA:1.10.340.30 25 122 7.8E-34 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RMA_RS06250 04bac08059042a2f5d7703c482b7a535 210 Pfam PF00633 Helix-hairpin-helix motif 100 127 8.5E-8 T 22-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 RMA_RS06250 04bac08059042a2f5d7703c482b7a535 210 SMART SM00525 186 206 7.9E-7 T 22-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 RMA_RS06250 04bac08059042a2f5d7703c482b7a535 210 SMART SM00478 38 185 3.6E-62 T 22-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 PRINTS PR00981 Seryl-tRNA synthetase signature 261 273 2.3E-33 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 PRINTS PR00981 Seryl-tRNA synthetase signature 348 364 2.3E-33 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 PRINTS PR00981 Seryl-tRNA synthetase signature 330 346 2.3E-33 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 PRINTS PR00981 Seryl-tRNA synthetase signature 273 286 2.3E-33 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 PRINTS PR00981 Seryl-tRNA synthetase signature 313 326 2.3E-33 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 PANTHER PTHR11778 1 421 2.2E-173 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 PIRSF PIRSF001529 1 423 7.9E-156 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 419 38.777 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 PANTHER PTHR11778:SF0 1 421 2.2E-173 T 22-04-2016 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 Gene3D G3DSA:1.10.287.40 1 100 6.7E-15 T 22-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 SUPERFAMILY SSF55681 116 415 2.28E-88 T 22-04-2016 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 1.4E-19 T 22-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 SUPERFAMILY SSF46589 1 112 2.67E-19 T 22-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 Gene3D G3DSA:3.30.930.10 105 417 1.6E-128 T 22-04-2016 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 414 1.0E-146 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RMA_RS06560 eccfccce3e04a4ac5294ceaad3498434 425 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 222 397 3.7E-34 T 22-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS03500 c5bd6a849f8be6b5811c5ef3714f9af3 335 PIRSF PIRSF000355 4 317 1.4E-103 T 22-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 RMA_RS03500 c5bd6a849f8be6b5811c5ef3714f9af3 335 Gene3D G3DSA:1.10.620.20 10 289 2.1E-99 T 22-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 RMA_RS03500 c5bd6a849f8be6b5811c5ef3714f9af3 335 PANTHER PTHR23409 12 325 3.2E-63 T 22-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 RMA_RS03500 c5bd6a849f8be6b5811c5ef3714f9af3 335 Pfam PF00268 Ribonucleotide reductase, small chain 10 281 4.1E-72 T 22-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 RMA_RS03500 c5bd6a849f8be6b5811c5ef3714f9af3 335 SUPERFAMILY SSF47240 10 318 1.11E-87 T 22-04-2016 IPR009078 Ferritin-like superfamily RMA_RS03500 c5bd6a849f8be6b5811c5ef3714f9af3 335 PANTHER PTHR23409:SF18 12 325 3.2E-63 T 22-04-2016 RMA_RS06575 0177a5e2076cdfc5f999a363e666e5fb 301 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 2 296 6.1E-105 T 22-04-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 RMA_RS06575 0177a5e2076cdfc5f999a363e666e5fb 301 PANTHER PTHR30238:SF0 1 301 2.5E-116 T 22-04-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 RMA_RS06575 0177a5e2076cdfc5f999a363e666e5fb 301 PANTHER PTHR30238 1 301 2.5E-116 T 22-04-2016 RMA_RS06575 0177a5e2076cdfc5f999a363e666e5fb 301 Pfam PF03741 Integral membrane protein TerC family 65 267 7.4E-51 T 22-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 RMA_RS06315 89eb3d7b26cb8d4499ce7c83fd894a80 401 SUPERFAMILY SSF53633 4 246 2.09E-75 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RMA_RS06315 89eb3d7b26cb8d4499ce7c83fd894a80 401 PIRSF PIRSF000726 63 401 5.4E-91 T 22-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RMA_RS06315 89eb3d7b26cb8d4499ce7c83fd894a80 401 SUPERFAMILY SSF55021 325 400 6.18E-12 T 22-04-2016 RMA_RS06315 89eb3d7b26cb8d4499ce7c83fd894a80 401 PANTHER PTHR21499 1 401 1.6E-106 T 22-04-2016 RMA_RS06315 89eb3d7b26cb8d4499ce7c83fd894a80 401 PANTHER PTHR21499:SF27 1 401 1.6E-106 T 22-04-2016 RMA_RS06315 89eb3d7b26cb8d4499ce7c83fd894a80 401 Gene3D G3DSA:3.40.1160.10 1 251 2.3E-72 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RMA_RS06315 89eb3d7b26cb8d4499ce7c83fd894a80 401 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 22-04-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RMA_RS06315 89eb3d7b26cb8d4499ce7c83fd894a80 401 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 61 399 1.1E-113 T 22-04-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RMA_RS06315 89eb3d7b26cb8d4499ce7c83fd894a80 401 PRINTS PR00474 Glutamate 5-kinase family signature 33 47 1.7E-5 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RMA_RS06315 89eb3d7b26cb8d4499ce7c83fd894a80 401 PRINTS PR00474 Glutamate 5-kinase family signature 155 182 1.7E-5 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RMA_RS06315 89eb3d7b26cb8d4499ce7c83fd894a80 401 PRINTS PR00474 Glutamate 5-kinase family signature 119 140 1.7E-5 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RMA_RS06315 89eb3d7b26cb8d4499ce7c83fd894a80 401 Pfam PF00696 Amino acid kinase family 3 232 2.1E-52 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RMA_RS01410 6ac7e6713c28a18b5b09b1f96e22c38b 148 SUPERFAMILY SSF52402 7 147 7.37E-24 T 22-04-2016 RMA_RS01410 6ac7e6713c28a18b5b09b1f96e22c38b 148 Gene3D G3DSA:3.40.50.620 7 146 1.5E-25 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS01410 6ac7e6713c28a18b5b09b1f96e22c38b 148 PANTHER PTHR31964 6 148 1.7E-12 T 22-04-2016 RMA_RS01410 6ac7e6713c28a18b5b09b1f96e22c38b 148 PRINTS PR01438 Universal stress protein signature 107 119 1.8E-6 T 22-04-2016 IPR006015 Universal stress protein A RMA_RS01410 6ac7e6713c28a18b5b09b1f96e22c38b 148 PRINTS PR01438 Universal stress protein signature 7 25 1.8E-6 T 22-04-2016 IPR006015 Universal stress protein A RMA_RS01410 6ac7e6713c28a18b5b09b1f96e22c38b 148 PRINTS PR01438 Universal stress protein signature 124 146 1.8E-6 T 22-04-2016 IPR006015 Universal stress protein A RMA_RS01410 6ac7e6713c28a18b5b09b1f96e22c38b 148 Pfam PF00582 Universal stress protein family 7 146 8.7E-22 T 22-04-2016 IPR006016 UspA GO:0006950 RMA_RS00695 a74a933f49d576c49cdc6604ba72271a 401 Gene3D G3DSA:3.40.640.10 45 275 4.0E-72 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RMA_RS00695 a74a933f49d576c49cdc6604ba72271a 401 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 115 136 1.4E-11 T 22-04-2016 RMA_RS00695 a74a933f49d576c49cdc6604ba72271a 401 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 199 222 1.4E-11 T 22-04-2016 RMA_RS00695 a74a933f49d576c49cdc6604ba72271a 401 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 230 254 1.4E-11 T 22-04-2016 RMA_RS00695 a74a933f49d576c49cdc6604ba72271a 401 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 162 186 1.4E-11 T 22-04-2016 RMA_RS00695 a74a933f49d576c49cdc6604ba72271a 401 PANTHER PTHR11751 15 397 4.8E-182 T 22-04-2016 RMA_RS00695 a74a933f49d576c49cdc6604ba72271a 401 PANTHER PTHR11751:SF306 15 397 4.8E-182 T 22-04-2016 RMA_RS00695 a74a933f49d576c49cdc6604ba72271a 401 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 236 249 - T 22-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 RMA_RS00695 a74a933f49d576c49cdc6604ba72271a 401 Gene3D G3DSA:3.90.1150.10 276 396 8.9E-45 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RMA_RS00695 a74a933f49d576c49cdc6604ba72271a 401 Pfam PF00155 Aminotransferase class I and II 32 392 1.4E-77 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RMA_RS00695 a74a933f49d576c49cdc6604ba72271a 401 SUPERFAMILY SSF53383 1 396 2.99E-112 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RMA_RS05240 b952980131994999f401d48b6d8e0760 319 SUPERFAMILY SSF144083 254 317 8.76E-21 T 22-04-2016 RMA_RS05240 b952980131994999f401d48b6d8e0760 319 Pfam PF01544 CorA-like Mg2+ transporter protein 22 315 1.4E-48 T 22-04-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RMA_RS05240 b952980131994999f401d48b6d8e0760 319 PANTHER PTHR21535:SF37 20 319 2.7E-74 T 22-04-2016 RMA_RS05240 b952980131994999f401d48b6d8e0760 319 Gene3D G3DSA:1.20.58.340 243 319 1.2E-27 T 22-04-2016 RMA_RS05240 b952980131994999f401d48b6d8e0760 319 SUPERFAMILY SSF143865 1 256 1.23E-28 T 22-04-2016 RMA_RS05240 b952980131994999f401d48b6d8e0760 319 PANTHER PTHR21535 20 319 2.7E-74 T 22-04-2016 RMA_RS05680 b49a88771892691e71b6efe207c855d1 190 Gene3D G3DSA:3.30.1370.70 1 90 8.7E-31 T 22-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RMA_RS05680 b49a88771892691e71b6efe207c855d1 190 SUPERFAMILY SSF110836 1 92 9.02E-27 T 22-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RMA_RS05680 b49a88771892691e71b6efe207c855d1 190 Pfam PF01106 NifU-like domain 117 183 1.3E-26 T 22-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RMA_RS05680 b49a88771892691e71b6efe207c855d1 190 Pfam PF08712 Scaffold protein Nfu/NifU N terminal 3 90 6.0E-28 T 22-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RMA_RS05680 b49a88771892691e71b6efe207c855d1 190 PANTHER PTHR11178 1 188 8.8E-87 T 22-04-2016 RMA_RS05680 b49a88771892691e71b6efe207c855d1 190 PIRSF PIRSF036773 1 190 2.0E-69 T 22-04-2016 RMA_RS05680 b49a88771892691e71b6efe207c855d1 190 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 125 175 4.0E-24 T 22-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RMA_RS05680 b49a88771892691e71b6efe207c855d1 190 SUPERFAMILY SSF117916 109 188 5.89E-26 T 22-04-2016 RMA_RS05680 b49a88771892691e71b6efe207c855d1 190 SMART SM00932 3 90 4.3E-40 T 22-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RMA_RS05680 b49a88771892691e71b6efe207c855d1 190 PANTHER PTHR11178:SF1 1 188 8.8E-87 T 22-04-2016 IPR017065 NFU1 iron-sulfur cluster scaffold homologue GO:0016226 RMA_RS00435 93902f1314e221ffb57256d589892991 181 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 51 73 - T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RMA_RS00435 93902f1314e221ffb57256d589892991 181 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 5 178 3.1E-49 T 22-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RMA_RS00435 93902f1314e221ffb57256d589892991 181 PIRSF PIRSF000847 2 181 6.4E-47 T 22-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RMA_RS00435 93902f1314e221ffb57256d589892991 181 PANTHER PTHR14269 6 174 5.5E-40 T 22-04-2016 RMA_RS00435 93902f1314e221ffb57256d589892991 181 Pfam PF01066 CDP-alcohol phosphatidyltransferase 6 73 4.3E-19 T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RMA_RS06480 71f29d7a58d36367672e0dfb34a0083a 66 SUPERFAMILY SSF57829 1 55 2.01E-19 T 22-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 RMA_RS06480 71f29d7a58d36367672e0dfb34a0083a 66 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 1.7E-22 T 22-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RMA_RS06480 71f29d7a58d36367672e0dfb34a0083a 66 PANTHER PTHR35534 1 61 2.2E-21 T 22-04-2016 RMA_RS06480 71f29d7a58d36367672e0dfb34a0083a 66 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 55 19.273 T 22-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RMA_RS06480 71f29d7a58d36367672e0dfb34a0083a 66 Pfam PF01783 Ribosomal L32p protein family 2 56 1.8E-21 T 22-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RMA_RS07280 dbb2a34701fe7a5fb5f20fb56b61b95e 139 SUPERFAMILY SSF56601 4 115 2.17E-16 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS07280 dbb2a34701fe7a5fb5f20fb56b61b95e 139 Gene3D G3DSA:3.40.710.10 2 96 1.8E-17 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS07280 dbb2a34701fe7a5fb5f20fb56b61b95e 139 Pfam PF00144 Beta-lactamase 6 115 3.9E-15 T 22-04-2016 IPR001466 Beta-lactamase-related RMA_RS00495 93a5558a7bb82aa8c4a3e96829f91920 192 Pfam PF02527 rRNA small subunit methyltransferase G 9 180 2.7E-50 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RMA_RS00495 93a5558a7bb82aa8c4a3e96829f91920 192 PIRSF PIRSF003078 1 188 3.8E-39 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RMA_RS00495 93a5558a7bb82aa8c4a3e96829f91920 192 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 1 191 22.014 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RMA_RS00495 93a5558a7bb82aa8c4a3e96829f91920 192 PANTHER PTHR31760:SF0 2 166 1.4E-30 T 22-04-2016 RMA_RS00495 93a5558a7bb82aa8c4a3e96829f91920 192 PANTHER PTHR31760 2 166 1.4E-30 T 22-04-2016 RMA_RS00495 93a5558a7bb82aa8c4a3e96829f91920 192 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 12 177 1.1E-45 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RMA_RS00495 93a5558a7bb82aa8c4a3e96829f91920 192 SUPERFAMILY SSF53335 3 170 5.5E-27 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS00495 93a5558a7bb82aa8c4a3e96829f91920 192 Gene3D G3DSA:3.40.50.150 3 180 8.3E-37 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS07310 9c87d4c9d8ff19eab0d69fc97beea610 374 Gene3D G3DSA:3.40.50.1770 3 193 1.5E-57 T 22-04-2016 RMA_RS07310 9c87d4c9d8ff19eab0d69fc97beea610 374 SMART SM01003 4 143 5.8E-46 T 22-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RMA_RS07310 9c87d4c9d8ff19eab0d69fc97beea610 374 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 147 369 5.3E-70 T 22-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RMA_RS07310 9c87d4c9d8ff19eab0d69fc97beea610 374 SUPERFAMILY SSF52283 1 173 2.38E-43 T 22-04-2016 RMA_RS07310 9c87d4c9d8ff19eab0d69fc97beea610 374 SUPERFAMILY SSF51735 144 320 1.8E-38 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS07310 9c87d4c9d8ff19eab0d69fc97beea610 374 Gene3D G3DSA:3.40.50.1770 194 367 8.0E-33 T 22-04-2016 RMA_RS07310 9c87d4c9d8ff19eab0d69fc97beea610 374 PANTHER PTHR10160:SF19 1 368 9.5E-150 T 22-04-2016 RMA_RS07310 9c87d4c9d8ff19eab0d69fc97beea610 374 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 6 142 9.3E-35 T 22-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RMA_RS07310 9c87d4c9d8ff19eab0d69fc97beea610 374 SMART SM01002 152 316 2.1E-79 T 22-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RMA_RS07310 9c87d4c9d8ff19eab0d69fc97beea610 374 PANTHER PTHR10160 1 368 9.5E-150 T 22-04-2016 RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 123 281 4.3E-64 T 22-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 Gene3D G3DSA:3.40.50.720 141 264 1.1E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 4 120 3.1E-35 T 22-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 PANTHER PTHR10025 4 280 2.9E-135 T 22-04-2016 RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 Hamap MF_01576 Bifunctional protein FolD [folD]. 2 283 36.467 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 Gene3D G3DSA:3.40.192.10 6 140 2.6E-42 T 22-04-2016 RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 SUPERFAMILY SSF51735 122 279 1.22E-44 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 SUPERFAMILY SSF53223 3 121 3.55E-36 T 22-04-2016 RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 22-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 75 100 - T 22-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 1.0E-77 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 1.0E-77 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 1.0E-77 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 1.0E-77 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 1.0E-77 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 1.0E-77 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RMA_RS03440 12de0ab0a4d15360d7595a5c80878f03 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 1.0E-77 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RMA_RS02500 47e16321bcccefb4140c5efcd5040b88 522 Gene3D G3DSA:3.40.720.10 223 476 1.8E-15 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RMA_RS02500 47e16321bcccefb4140c5efcd5040b88 522 SUPERFAMILY SSF53649 223 482 3.43E-26 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RMA_RS02500 47e16321bcccefb4140c5efcd5040b88 522 PANTHER PTHR30443 1 518 9.0E-78 T 22-04-2016 RMA_RS02500 47e16321bcccefb4140c5efcd5040b88 522 Pfam PF00884 Sulfatase 223 507 5.3E-46 T 22-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 RMA_RS02500 47e16321bcccefb4140c5efcd5040b88 522 Pfam PF08019 Domain of unknown function (DUF1705) 61 171 4.4E-12 T 22-04-2016 IPR012549 Domain of unknown function DUF1705 GO:0016021 RMA_RS01355 7336b2409f4069556cb2b2b9125db7a9 128 SUPERFAMILY SSF52540 2 89 7.36E-6 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01355 7336b2409f4069556cb2b2b9125db7a9 128 Gene3D G3DSA:3.40.50.300 23 79 6.9E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00190 5ab1788d91cdaea29968fa372b5fc1cf 280 PANTHER PTHR13887 33 273 1.8E-20 T 22-04-2016 RMA_RS00190 5ab1788d91cdaea29968fa372b5fc1cf 280 SUPERFAMILY SSF52833 90 264 4.08E-34 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS00190 5ab1788d91cdaea29968fa372b5fc1cf 280 Pfam PF13462 Thioredoxin 100 265 3.7E-41 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS00190 5ab1788d91cdaea29968fa372b5fc1cf 280 ProSitePatterns PS00194 Thioredoxin family active site. 113 131 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RMA_RS00190 5ab1788d91cdaea29968fa372b5fc1cf 280 Gene3D G3DSA:3.40.30.10 98 269 2.2E-30 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS00190 5ab1788d91cdaea29968fa372b5fc1cf 280 PANTHER PTHR13887:SF14 33 273 1.8E-20 T 22-04-2016 RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 PANTHER PTHR30050 14 463 2.0E-187 T 22-04-2016 RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 19 460 8.8E-169 T 22-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 372 440 9.8E-29 T 22-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 16 462 32.842 T 22-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 225 239 1.9E-47 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 161 181 1.9E-47 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 421 440 1.9E-47 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 259 286 1.9E-47 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 193 207 1.9E-47 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 SUPERFAMILY SSF52540 128 339 5.04E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 Gene3D G3DSA:1.10.8.60 295 361 3.3E-28 T 22-04-2016 RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 PANTHER PTHR30050:SF2 14 463 2.0E-187 T 22-04-2016 RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 ProSitePatterns PS01008 DnaA protein signature. 421 440 - T 22-04-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 SMART SM00382 160 288 6.4E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 SUPERFAMILY SSF48295 358 463 4.97E-36 T 22-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 Pfam PF00308 Bacterial dnaA protein 126 345 2.5E-91 T 22-04-2016 IPR013317 Chromosomal replication initiator protein DnaA RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 Pfam PF11638 DnaA N-terminal domain 17 78 3.5E-19 T 22-04-2016 IPR024633 DnaA N-terminal domain RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 Gene3D G3DSA:3.40.50.300 124 291 3.9E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 Gene3D G3DSA:1.10.1750.10 362 462 7.1E-38 T 22-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RMA_RS05120 1cdaeb08a454a58b4acbcf68e1878e1b 463 SMART SM00760 371 440 3.4E-38 T 22-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RMA_RS06600 5412a40398c35e4528519180b7f48b7d 205 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 15 163 3.1E-34 T 22-04-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 RMA_RS06600 5412a40398c35e4528519180b7f48b7d 205 PANTHER PTHR33269 3 194 1.6E-48 T 22-04-2016 RMA_RS06600 5412a40398c35e4528519180b7f48b7d 205 PANTHER PTHR33269:SF4 3 194 1.6E-48 T 22-04-2016 RMA_RS02810 9ee6bfbe3440d1ffd3adb65b391e9740 405 SUPERFAMILY SSF103473 4 399 2.35E-36 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS02810 9ee6bfbe3440d1ffd3adb65b391e9740 405 Pfam PF07690 Major Facilitator Superfamily 10 355 7.0E-17 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RMA_RS02810 9ee6bfbe3440d1ffd3adb65b391e9740 405 Gene3D G3DSA:1.20.1250.20 6 200 6.5E-14 T 22-04-2016 RMA_RS02810 9ee6bfbe3440d1ffd3adb65b391e9740 405 Gene3D G3DSA:1.20.1250.20 221 399 1.1E-6 T 22-04-2016 RMA_RS02810 9ee6bfbe3440d1ffd3adb65b391e9740 405 PANTHER PTHR23508 5 400 1.4E-42 T 22-04-2016 RMA_RS02650 50b21b8a8f203e1eb9e0f56b2bde7872 82 PANTHER PTHR33383 1 69 6.9E-35 T 22-04-2016 RMA_RS02650 50b21b8a8f203e1eb9e0f56b2bde7872 82 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 68 2.0E-23 T 22-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RMA_RS02650 50b21b8a8f203e1eb9e0f56b2bde7872 82 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 5 74 2.8E-28 T 22-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RMA_RS02650 50b21b8a8f203e1eb9e0f56b2bde7872 82 Pfam PF01809 Haemolytic domain 3 68 1.2E-29 T 22-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RMA_RS02650 50b21b8a8f203e1eb9e0f56b2bde7872 82 SMART SM01234 1 68 2.9E-42 T 22-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RMA_RS02650 50b21b8a8f203e1eb9e0f56b2bde7872 82 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 24.322 T 22-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RMA_RS00375 b5218ad9948e1cda37cf9d374c7b9b40 95 Pfam PF01084 Ribosomal protein S18 40 88 1.1E-21 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00375 b5218ad9948e1cda37cf9d374c7b9b40 95 SUPERFAMILY SSF46911 18 93 5.62E-25 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00375 b5218ad9948e1cda37cf9d374c7b9b40 95 PANTHER PTHR13479 20 92 5.7E-21 T 22-04-2016 RMA_RS00375 b5218ad9948e1cda37cf9d374c7b9b40 95 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 41 91 1.0E-22 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00375 b5218ad9948e1cda37cf9d374c7b9b40 95 TIGRFAM TIGR00165 S18: ribosomal protein bS18 24 91 9.1E-22 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00375 b5218ad9948e1cda37cf9d374c7b9b40 95 PRINTS PR00974 Ribosomal protein S18 family signature 58 65 2.3E-13 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00375 b5218ad9948e1cda37cf9d374c7b9b40 95 PRINTS PR00974 Ribosomal protein S18 family signature 66 80 2.3E-13 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00375 b5218ad9948e1cda37cf9d374c7b9b40 95 PRINTS PR00974 Ribosomal protein S18 family signature 80 90 2.3E-13 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00375 b5218ad9948e1cda37cf9d374c7b9b40 95 PRINTS PR00974 Ribosomal protein S18 family signature 48 58 2.3E-13 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00375 b5218ad9948e1cda37cf9d374c7b9b40 95 Gene3D G3DSA:4.10.640.10 18 92 5.3E-26 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00375 b5218ad9948e1cda37cf9d374c7b9b40 95 ProSitePatterns PS00057 Ribosomal protein S18 signature. 41 64 - T 22-04-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00375 b5218ad9948e1cda37cf9d374c7b9b40 95 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 22 93 19.523 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00015 b7195f78b329e5e69c9ffc1c2ba1c02f 249 PANTHER PTHR24220 25 246 1.4E-62 T 22-04-2016 RMA_RS00015 b7195f78b329e5e69c9ffc1c2ba1c02f 249 SUPERFAMILY SSF52540 42 240 5.09E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00015 b7195f78b329e5e69c9ffc1c2ba1c02f 249 Pfam PF00005 ABC transporter 47 179 1.1E-18 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS00015 b7195f78b329e5e69c9ffc1c2ba1c02f 249 PANTHER PTHR24220:SF117 25 246 1.4E-62 T 22-04-2016 RMA_RS00015 b7195f78b329e5e69c9ffc1c2ba1c02f 249 Gene3D G3DSA:3.40.50.300 42 241 2.8E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00015 b7195f78b329e5e69c9ffc1c2ba1c02f 249 SMART SM00382 56 217 4.4E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS00015 b7195f78b329e5e69c9ffc1c2ba1c02f 249 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS00605 dd0f0fb8925b752342e1ff0bf0eaf92d 186 Pfam PF06242 Protein of unknown function (DUF1013) 39 175 1.3E-60 T 22-04-2016 IPR010421 Protein of unknown function DUF1013 RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 SUPERFAMILY SSF46565 3 104 1.01E-31 T 22-04-2016 IPR001623 DnaJ domain RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 SUPERFAMILY SSF57938 136 213 1.96E-20 T 22-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 PANTHER PTHR24078:SF231 1 363 1.8E-136 T 22-04-2016 RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 Gene3D G3DSA:1.10.287.110 2 102 2.9E-33 T 22-04-2016 IPR001623 DnaJ domain RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 ProSitePatterns PS00636 Nt-dnaJ domain signature. 45 64 - T 22-04-2016 IPR018253 DnaJ domain, conserved site RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 PRINTS PR00625 DnaJ domain signature 24 39 5.5E-26 T 22-04-2016 IPR001623 DnaJ domain RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 PRINTS PR00625 DnaJ domain signature 40 60 5.5E-26 T 22-04-2016 IPR001623 DnaJ domain RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 PRINTS PR00625 DnaJ domain signature 6 24 5.5E-26 T 22-04-2016 IPR001623 DnaJ domain RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 PRINTS PR00625 DnaJ domain signature 60 79 5.5E-26 T 22-04-2016 IPR001623 DnaJ domain RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 Pfam PF00684 DnaJ central domain 149 209 5.0E-13 T 22-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 PANTHER PTHR24078 1 363 1.8E-136 T 22-04-2016 RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 Gene3D G3DSA:2.10.230.10 146 213 4.7E-21 T 22-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 4 353 1.1E-133 T 22-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 SUPERFAMILY SSF49493 120 154 1.1E-19 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 SUPERFAMILY SSF49493 215 259 1.1E-19 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 Pfam PF01556 DnaJ C terminal domain 123 336 1.8E-39 T 22-04-2016 IPR002939 Chaperone DnaJ, C-terminal RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 SUPERFAMILY SSF49493 261 347 3.27E-22 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 Gene3D G3DSA:2.60.260.20 215 256 9.9E-20 T 22-04-2016 RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 Gene3D G3DSA:2.60.260.20 116 145 9.9E-20 T 22-04-2016 RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 Gene3D G3DSA:2.60.260.20 258 337 9.4E-21 T 22-04-2016 RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 Pfam PF00226 DnaJ domain 4 65 4.9E-24 T 22-04-2016 IPR001623 DnaJ domain RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 1 371 38.384 T 22-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RMA_RS01280 d91f6c0476f6366039c3221041af7f09 373 SMART SM00271 3 60 5.0E-27 T 22-04-2016 IPR001623 DnaJ domain RMA_RS04995 905a5ad2164c3b6f3099f9926e218603 95 SUPERFAMILY SSF103473 3 67 3.01E-8 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS04995 905a5ad2164c3b6f3099f9926e218603 95 Gene3D G3DSA:1.20.1250.20 3 45 2.2E-4 T 22-04-2016 RMA_RS00185 52b4c4bf4d62e0f13f46900b949428b7 87 Pfam PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter 34 77 2.8E-11 T 22-04-2016 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter RMA_RS00405 764c4ff79b75ee4cac722a7d9b3d0a8c 261 Gene3D G3DSA:1.10.1060.10 129 258 2.9E-50 T 22-04-2016 RMA_RS00405 764c4ff79b75ee4cac722a7d9b3d0a8c 261 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 80 88 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RMA_RS00405 764c4ff79b75ee4cac722a7d9b3d0a8c 261 SUPERFAMILY SSF46548 129 258 4.01E-39 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RMA_RS00405 764c4ff79b75ee4cac722a7d9b3d0a8c 261 PANTHER PTHR11921 16 258 1.2E-160 T 22-04-2016 RMA_RS00405 764c4ff79b75ee4cac722a7d9b3d0a8c 261 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 29 133 2.2E-33 T 22-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RMA_RS00405 764c4ff79b75ee4cac722a7d9b3d0a8c 261 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 32 252 4.4E-85 T 22-04-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RMA_RS00405 764c4ff79b75ee4cac722a7d9b3d0a8c 261 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 171 182 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RMA_RS00405 764c4ff79b75ee4cac722a7d9b3d0a8c 261 Pfam PF13534 4Fe-4S dicluster domain 170 243 3.9E-9 T 22-04-2016 RMA_RS00405 764c4ff79b75ee4cac722a7d9b3d0a8c 261 SUPERFAMILY SSF54292 27 128 5.77E-32 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RMA_RS00405 764c4ff79b75ee4cac722a7d9b3d0a8c 261 PANTHER PTHR11921:SF29 16 258 1.2E-160 T 22-04-2016 RMA_RS00405 764c4ff79b75ee4cac722a7d9b3d0a8c 261 Gene3D G3DSA:3.10.20.30 21 128 4.1E-42 T 22-04-2016 IPR012675 Beta-grasp domain RMA_RS04370 7c93f16993feb42449030fd294f08157 327 PANTHER PTHR12001 11 327 2.7E-101 T 22-04-2016 IPR017446 Polyprenyl synthetase-related RMA_RS04370 7c93f16993feb42449030fd294f08157 327 SUPERFAMILY SSF48576 2 327 4.32E-85 T 22-04-2016 IPR008949 Isoprenoid synthase domain RMA_RS04370 7c93f16993feb42449030fd294f08157 327 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 205 217 - T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RMA_RS04370 7c93f16993feb42449030fd294f08157 327 Gene3D G3DSA:1.10.600.10 7 326 7.3E-90 T 22-04-2016 IPR008949 Isoprenoid synthase domain RMA_RS04370 7c93f16993feb42449030fd294f08157 327 PANTHER PTHR12001:SF47 11 327 2.7E-101 T 22-04-2016 RMA_RS04370 7c93f16993feb42449030fd294f08157 327 Pfam PF00348 Polyprenyl synthetase 31 274 3.9E-66 T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RMA_RS01505 8bff12d0f1c3e5b1674e6461e94629b4 302 SUPERFAMILY SSF53328 2 202 6.67E-56 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RMA_RS01505 8bff12d0f1c3e5b1674e6461e94629b4 302 PANTHER PTHR11138 2 292 1.1E-92 T 22-04-2016 RMA_RS01505 8bff12d0f1c3e5b1674e6461e94629b4 302 Gene3D G3DSA:3.40.50.170 1 200 8.5E-62 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RMA_RS01505 8bff12d0f1c3e5b1674e6461e94629b4 302 SUPERFAMILY SSF50486 200 301 4.08E-30 T 22-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 RMA_RS01505 8bff12d0f1c3e5b1674e6461e94629b4 302 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 2 293 2.6E-85 T 22-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RMA_RS01505 8bff12d0f1c3e5b1674e6461e94629b4 302 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 296 32.717 T 22-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RMA_RS01505 8bff12d0f1c3e5b1674e6461e94629b4 302 Pfam PF00551 Formyl transferase 3 177 1.7E-34 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RMA_RS01505 8bff12d0f1c3e5b1674e6461e94629b4 302 Pfam PF02911 Formyl transferase, C-terminal domain 199 293 2.1E-28 T 22-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RMA_RS01505 8bff12d0f1c3e5b1674e6461e94629b4 302 Gene3D G3DSA:3.10.25.10 202 301 7.6E-31 T 22-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 Pfam PF17092 Penicillin-binding protein OB-like domain 323 417 1.3E-15 T 22-04-2016 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00230+2.4.2.-|KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00514+2.4.2.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.-|UniPathway: UPA00219 RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 SUPERFAMILY SSF53955 43 257 4.78E-72 T 22-04-2016 IPR023346 Lysozyme-like domain RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 66 718 2.1E-204 T 22-04-2016 RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 SUPERFAMILY SSF56601 414 747 3.29E-117 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 SUPERFAMILY SSF56601 215 237 3.29E-117 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 SUPERFAMILY SSF56601 266 319 3.29E-117 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 Gene3D G3DSA:3.40.710.10 414 758 1.3E-123 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 Gene3D G3DSA:3.40.710.10 237 319 1.3E-123 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 Pfam PF00912 Transglycosylase 56 233 4.5E-59 T 22-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 PANTHER PTHR32282 11 316 1.2E-215 T 22-04-2016 RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 PANTHER PTHR32282 413 602 1.2E-215 T 22-04-2016 RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 PANTHER PTHR32282 625 749 1.2E-215 T 22-04-2016 RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 PANTHER PTHR32282:SF5 11 316 1.2E-215 T 22-04-2016 RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 PANTHER PTHR32282:SF5 413 602 1.2E-215 T 22-04-2016 RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 PANTHER PTHR32282:SF5 625 749 1.2E-215 T 22-04-2016 RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 Gene3D G3DSA:2.40.50.140 353 413 5.0E-6 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 Pfam PF00905 Penicillin binding protein transpeptidase domain 419 711 1.8E-33 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RMA_RS06710 7f9278faae29b7d63ac9529746f71b80 790 Gene3D G3DSA:1.10.3810.10 56 236 3.1E-68 T 22-04-2016 RMA_RS03950 f58d568a58ebdb015005709b1006b25c 253 Gene3D G3DSA:3.40.50.300 54 233 1.5E-30 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03950 f58d568a58ebdb015005709b1006b25c 253 Pfam PF01695 IstB-like ATP binding protein 55 231 2.8E-60 T 22-04-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 RMA_RS03950 f58d568a58ebdb015005709b1006b25c 253 PANTHER PTHR30050 3 245 1.2E-88 T 22-04-2016 RMA_RS03950 f58d568a58ebdb015005709b1006b25c 253 SUPERFAMILY SSF52540 78 228 2.51E-25 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03950 f58d568a58ebdb015005709b1006b25c 253 PIRSF PIRSF003073 1 253 3.2E-79 T 22-04-2016 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein RMA_RS03950 f58d568a58ebdb015005709b1006b25c 253 PANTHER PTHR30050:SF6 3 245 1.2E-88 T 22-04-2016 RMA_RS03950 f58d568a58ebdb015005709b1006b25c 253 SMART SM00382 100 232 1.9E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS03950 f58d568a58ebdb015005709b1006b25c 253 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 101 121 1.5E-5 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RMA_RS03950 f58d568a58ebdb015005709b1006b25c 253 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 131 145 1.5E-5 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RMA_RS03950 f58d568a58ebdb015005709b1006b25c 253 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 163 177 1.5E-5 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RMA_RS00225 2f382dee8f2df84e6fc1bc5357a4df1f 71 SUPERFAMILY SSF51717 3 70 2.88E-16 T 22-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 RMA_RS00225 2f382dee8f2df84e6fc1bc5357a4df1f 71 Gene3D G3DSA:3.20.20.20 3 70 5.0E-14 T 22-04-2016 IPR000489 Pterin-binding domain GO:0042558 RMA_RS00225 2f382dee8f2df84e6fc1bc5357a4df1f 71 Pfam PF00809 Pterin binding enzyme 6 69 4.3E-12 T 22-04-2016 IPR000489 Pterin-binding domain GO:0042558 RMA_RS05580 fd352a4acb25b1b6b09fdea899ec76c0 217 Gene3D G3DSA:3.30.1140.32 113 209 5.6E-43 T 22-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 RMA_RS05580 fd352a4acb25b1b6b09fdea899ec76c0 217 ProSitePatterns PS00548 Ribosomal protein S3 signature. 166 200 - T 22-04-2016 IPR018280 Ribosomal protein S3, conserved site RMA_RS05580 fd352a4acb25b1b6b09fdea899ec76c0 217 SUPERFAMILY SSF54821 111 209 2.75E-38 T 22-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 RMA_RS05580 fd352a4acb25b1b6b09fdea899ec76c0 217 Pfam PF00189 Ribosomal protein S3, C-terminal domain 123 205 6.1E-38 T 22-04-2016 RMA_RS05580 fd352a4acb25b1b6b09fdea899ec76c0 217 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 213 6.7E-91 T 22-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RMA_RS05580 fd352a4acb25b1b6b09fdea899ec76c0 217 Pfam PF07650 KH domain 39 111 4.9E-16 T 22-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 RMA_RS05580 fd352a4acb25b1b6b09fdea899ec76c0 217 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 209 34.51 T 22-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RMA_RS05580 fd352a4acb25b1b6b09fdea899ec76c0 217 SUPERFAMILY SSF54814 2 109 1.78E-24 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RMA_RS05580 fd352a4acb25b1b6b09fdea899ec76c0 217 PANTHER PTHR11760:SF19 2 209 1.8E-98 T 22-04-2016 RMA_RS05580 fd352a4acb25b1b6b09fdea899ec76c0 217 Gene3D G3DSA:3.30.300.20 20 110 1.2E-23 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta RMA_RS05580 fd352a4acb25b1b6b09fdea899ec76c0 217 PANTHER PTHR11760 2 209 1.8E-98 T 22-04-2016 RMA_RS05580 fd352a4acb25b1b6b09fdea899ec76c0 217 SMART SM00322 62 128 3.5E-4 T 22-04-2016 IPR004087 K Homology domain GO:0003676 RMA_RS01605 19988c2c33e3bf66462428cd892165ce 412 SUPERFAMILY SSF63411 6 214 6.98E-56 T 22-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RMA_RS01605 19988c2c33e3bf66462428cd892165ce 412 Gene3D G3DSA:3.30.830.10 222 407 5.3E-47 T 22-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RMA_RS01605 19988c2c33e3bf66462428cd892165ce 412 Gene3D G3DSA:3.30.830.10 4 213 4.5E-54 T 22-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RMA_RS01605 19988c2c33e3bf66462428cd892165ce 412 SUPERFAMILY SSF63411 223 407 5.1E-39 T 22-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RMA_RS01605 19988c2c33e3bf66462428cd892165ce 412 Pfam PF05193 Peptidase M16 inactive domain 169 341 3.1E-37 T 22-04-2016 IPR007863 Peptidase M16, C-terminal RMA_RS01605 19988c2c33e3bf66462428cd892165ce 412 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 36 59 - T 22-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 RMA_RS01605 19988c2c33e3bf66462428cd892165ce 412 PANTHER PTHR11851 7 406 5.5E-120 T 22-04-2016 RMA_RS01605 19988c2c33e3bf66462428cd892165ce 412 Pfam PF00675 Insulinase (Peptidase family M16) 18 162 3.3E-41 T 22-04-2016 IPR011765 Peptidase M16, N-terminal RMA_RS01265 30bf1e6417bd734f9c725af587f50811 545 SUPERFAMILY SSF52540 1 212 4.75E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01265 30bf1e6417bd734f9c725af587f50811 545 Gene3D G3DSA:3.40.50.300 1 204 1.2E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01265 30bf1e6417bd734f9c725af587f50811 545 PIRSF PIRSF003128 1 545 7.0E-182 T 22-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RMA_RS01265 30bf1e6417bd734f9c725af587f50811 545 Pfam PF02463 RecF/RecN/SMC N terminal domain 5 501 1.6E-22 T 22-04-2016 IPR003395 RecF/RecN/SMC, N-terminal RMA_RS01265 30bf1e6417bd734f9c725af587f50811 545 PANTHER PTHR11059 4 543 4.1E-129 T 22-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RMA_RS01265 30bf1e6417bd734f9c725af587f50811 545 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 544 2.8E-137 T 22-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RMA_RS01265 30bf1e6417bd734f9c725af587f50811 545 Gene3D G3DSA:3.40.50.300 423 505 9.3E-6 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01265 30bf1e6417bd734f9c725af587f50811 545 SUPERFAMILY SSF52540 4 50 2.1E-28 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01265 30bf1e6417bd734f9c725af587f50811 545 SUPERFAMILY SSF52540 288 502 2.1E-28 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02995 8352dd94ada72732c5b4e70e09de64a2 331 SUPERFAMILY SSF54534 113 195 5.7E-10 T 22-04-2016 RMA_RS02995 8352dd94ada72732c5b4e70e09de64a2 331 Gene3D G3DSA:3.10.50.40 115 188 2.8E-6 T 22-04-2016 RMA_RS02995 8352dd94ada72732c5b4e70e09de64a2 331 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 128 188 5.3E-6 T 22-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 RMA_RS04940 1b12c052680fa85cb97ca8d6d2f28390 282 SUPERFAMILY SSF54534 107 231 2.55E-28 T 22-04-2016 RMA_RS04940 1b12c052680fa85cb97ca8d6d2f28390 282 Gene3D G3DSA:3.10.50.40 135 254 2.1E-36 T 22-04-2016 RMA_RS04940 1b12c052680fa85cb97ca8d6d2f28390 282 PANTHER PTHR10657 81 273 2.1E-35 T 22-04-2016 RMA_RS04940 1b12c052680fa85cb97ca8d6d2f28390 282 Pfam PF13616 PPIC-type PPIASE domain 128 233 4.9E-27 T 22-04-2016 RMA_RS01075 c4d100aed33bd31dab3dbda0c84ac534 493 Pfam PF01425 Amidase 25 473 7.2E-141 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RMA_RS01075 c4d100aed33bd31dab3dbda0c84ac534 493 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 16 482 2.0E-167 T 22-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RMA_RS01075 c4d100aed33bd31dab3dbda0c84ac534 493 ProSitePatterns PS00571 Amidases signature. 156 187 - T 22-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RMA_RS01075 c4d100aed33bd31dab3dbda0c84ac534 493 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 12 484 89.384 T 22-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RMA_RS01075 c4d100aed33bd31dab3dbda0c84ac534 493 PANTHER PTHR11895 1 490 9.5E-208 T 22-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RMA_RS01075 c4d100aed33bd31dab3dbda0c84ac534 493 Gene3D G3DSA:3.90.1300.10 2 484 2.2E-161 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RMA_RS01075 c4d100aed33bd31dab3dbda0c84ac534 493 PANTHER PTHR11895:SF7 1 490 9.5E-208 T 22-04-2016 RMA_RS01075 c4d100aed33bd31dab3dbda0c84ac534 493 SUPERFAMILY SSF75304 2 481 3.27E-142 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RMA_RS06965 c1df14e7d7b050a285ac5d6f30cff50e 301 Pfam PF01545 Cation efflux family 15 206 3.3E-37 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RMA_RS06965 c1df14e7d7b050a285ac5d6f30cff50e 301 Gene3D G3DSA:1.20.1510.10 14 205 1.1E-38 T 22-04-2016 IPR027469 Cation efflux protein transmembrane domain RMA_RS06965 c1df14e7d7b050a285ac5d6f30cff50e 301 PANTHER PTHR11562 6 296 1.1E-81 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RMA_RS06965 c1df14e7d7b050a285ac5d6f30cff50e 301 SUPERFAMILY SSF160240 210 288 8.37E-21 T 22-04-2016 RMA_RS06965 c1df14e7d7b050a285ac5d6f30cff50e 301 Pfam PF16916 Dimerisation domain of Zinc Transporter 210 286 1.0E-23 T 22-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain RMA_RS06965 c1df14e7d7b050a285ac5d6f30cff50e 301 Gene3D G3DSA:3.30.70.1350 207 288 8.3E-27 T 22-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain RMA_RS06965 c1df14e7d7b050a285ac5d6f30cff50e 301 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 13 286 8.5E-61 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RMA_RS06965 c1df14e7d7b050a285ac5d6f30cff50e 301 SUPERFAMILY SSF161111 7 207 2.35E-44 T 22-04-2016 RMA_RS06965 c1df14e7d7b050a285ac5d6f30cff50e 301 PANTHER PTHR11562:SF55 6 296 1.1E-81 T 22-04-2016 RMA_RS02410 fbd4276efdc6c42e80396bd71c2f7ae8 446 Gene3D G3DSA:3.40.50.2000 172 298 1.8E-7 T 22-04-2016 RMA_RS02410 fbd4276efdc6c42e80396bd71c2f7ae8 446 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 1 389 35.608 T 22-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RMA_RS02410 fbd4276efdc6c42e80396bd71c2f7ae8 446 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 4 375 2.0E-66 T 22-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RMA_RS02410 fbd4276efdc6c42e80396bd71c2f7ae8 446 PANTHER PTHR30372 3 413 1.0E-78 T 22-04-2016 RMA_RS02410 fbd4276efdc6c42e80396bd71c2f7ae8 446 Pfam PF02684 Lipid-A-disaccharide synthetase 4 379 6.8E-130 T 22-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RMA_RS02410 fbd4276efdc6c42e80396bd71c2f7ae8 446 SUPERFAMILY SSF53756 3 340 2.7E-28 T 22-04-2016 RMA_RS02410 fbd4276efdc6c42e80396bd71c2f7ae8 446 TIGRFAM TIGR03775 RPE3: rickettsial palindromic element RPE3 domain 379 421 3.4E-20 T 22-04-2016 IPR022437 Rickettsia palindromic element RPE3 RMA_RS06915 ab47b110a381179eaf59d89c2adc7360 259 SUPERFAMILY SSF55920 3 252 7.46E-90 T 22-04-2016 IPR000994 Peptidase M24, structural domain RMA_RS06915 ab47b110a381179eaf59d89c2adc7360 259 PANTHER PTHR10804 1 259 1.1E-135 T 22-04-2016 RMA_RS06915 ab47b110a381179eaf59d89c2adc7360 259 Hamap MF_01974 Methionine aminopeptidase [map]. 3 250 42.569 T 22-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RMA_RS06915 ab47b110a381179eaf59d89c2adc7360 259 Gene3D G3DSA:3.90.230.10 2 254 2.6E-95 T 22-04-2016 IPR000994 Peptidase M24, structural domain RMA_RS06915 ab47b110a381179eaf59d89c2adc7360 259 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 166 184 - T 22-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RMA_RS06915 ab47b110a381179eaf59d89c2adc7360 259 PANTHER PTHR10804:SF82 1 259 1.1E-135 T 22-04-2016 RMA_RS06915 ab47b110a381179eaf59d89c2adc7360 259 PRINTS PR00599 Methionine aminopeptidase-1 signature 191 203 2.6E-22 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RMA_RS06915 ab47b110a381179eaf59d89c2adc7360 259 PRINTS PR00599 Methionine aminopeptidase-1 signature 160 172 2.6E-22 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RMA_RS06915 ab47b110a381179eaf59d89c2adc7360 259 PRINTS PR00599 Methionine aminopeptidase-1 signature 68 81 2.6E-22 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RMA_RS06915 ab47b110a381179eaf59d89c2adc7360 259 PRINTS PR00599 Methionine aminopeptidase-1 signature 90 106 2.6E-22 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RMA_RS06915 ab47b110a381179eaf59d89c2adc7360 259 Pfam PF00557 Metallopeptidase family M24 13 241 3.6E-54 T 22-04-2016 IPR000994 Peptidase M24, structural domain RMA_RS06915 ab47b110a381179eaf59d89c2adc7360 259 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 249 3.6E-94 T 22-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RMA_RS02210 ae01d1f289db6b8c2a3d046d96a7fe94 258 PRINTS PR00377 Inositol monophosphatase superfamily signature 79 95 1.8E-12 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RMA_RS02210 ae01d1f289db6b8c2a3d046d96a7fe94 258 PRINTS PR00377 Inositol monophosphatase superfamily signature 37 57 1.8E-12 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RMA_RS02210 ae01d1f289db6b8c2a3d046d96a7fe94 258 PRINTS PR00377 Inositol monophosphatase superfamily signature 202 226 1.8E-12 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RMA_RS02210 ae01d1f289db6b8c2a3d046d96a7fe94 258 PANTHER PTHR20854 4 241 8.8E-44 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RMA_RS02210 ae01d1f289db6b8c2a3d046d96a7fe94 258 SUPERFAMILY SSF56655 4 245 1.22E-56 T 22-04-2016 RMA_RS02210 ae01d1f289db6b8c2a3d046d96a7fe94 258 PANTHER PTHR20854:SF5 4 241 8.8E-44 T 22-04-2016 RMA_RS02210 ae01d1f289db6b8c2a3d046d96a7fe94 258 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 205 219 - T 22-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RMA_RS02210 ae01d1f289db6b8c2a3d046d96a7fe94 258 Gene3D G3DSA:3.40.190.80 149 246 5.1E-35 T 22-04-2016 RMA_RS02210 ae01d1f289db6b8c2a3d046d96a7fe94 258 Pfam PF00459 Inositol monophosphatase family 33 240 2.6E-46 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RMA_RS02210 ae01d1f289db6b8c2a3d046d96a7fe94 258 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 79 92 - T 22-04-2016 IPR020583 Inositol monophosphatase, metal-binding site RMA_RS02210 ae01d1f289db6b8c2a3d046d96a7fe94 258 Gene3D G3DSA:3.30.540.10 4 148 2.7E-28 T 22-04-2016 RMA_RS00625 21fdc9f911a8fc4197555f774bca22f2 418 Pfam PF00083 Sugar (and other) transporter 13 211 4.6E-21 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RMA_RS00625 21fdc9f911a8fc4197555f774bca22f2 418 Gene3D G3DSA:1.20.1250.20 232 412 1.7E-21 T 22-04-2016 RMA_RS00625 21fdc9f911a8fc4197555f774bca22f2 418 Gene3D G3DSA:1.20.1250.20 6 212 1.3E-20 T 22-04-2016 RMA_RS00625 21fdc9f911a8fc4197555f774bca22f2 418 PANTHER PTHR23508:SF1 2 412 6.4E-130 T 22-04-2016 RMA_RS00625 21fdc9f911a8fc4197555f774bca22f2 418 SUPERFAMILY SSF103473 5 413 1.7E-62 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS00625 21fdc9f911a8fc4197555f774bca22f2 418 Pfam PF07690 Major Facilitator Superfamily 250 411 5.9E-13 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RMA_RS00625 21fdc9f911a8fc4197555f774bca22f2 418 PANTHER PTHR23508 2 412 6.4E-130 T 22-04-2016 RMA_RS05725 ed98c65e525247b37cf98e8a12c2e232 444 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 11 444 26.266 T 22-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RMA_RS05725 ed98c65e525247b37cf98e8a12c2e232 444 PANTHER PTHR30008:SF0 6 442 3.0E-120 T 22-04-2016 RMA_RS05725 ed98c65e525247b37cf98e8a12c2e232 444 Pfam PF13742 OB-fold nucleic acid binding domain 14 106 1.8E-24 T 22-04-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 RMA_RS05725 ed98c65e525247b37cf98e8a12c2e232 444 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 15 441 1.2E-116 T 22-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RMA_RS05725 ed98c65e525247b37cf98e8a12c2e232 444 Pfam PF02601 Exonuclease VII, large subunit 136 441 2.6E-81 T 22-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 RMA_RS05725 ed98c65e525247b37cf98e8a12c2e232 444 PANTHER PTHR30008 6 442 3.0E-120 T 22-04-2016 RMA_RS00370 ee2f4894144ab0f9f390e6a596bbb053 121 TIGRFAM TIGR00166 S6: ribosomal protein bS6 2 94 1.2E-22 T 22-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS00370 ee2f4894144ab0f9f390e6a596bbb053 121 Pfam PF01250 Ribosomal protein S6 4 91 1.2E-25 T 22-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS00370 ee2f4894144ab0f9f390e6a596bbb053 121 SUPERFAMILY SSF54995 1 103 6.15E-31 T 22-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS00370 ee2f4894144ab0f9f390e6a596bbb053 121 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 95 20.169 T 22-04-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 RMA_RS00370 ee2f4894144ab0f9f390e6a596bbb053 121 Gene3D G3DSA:3.30.70.60 1 104 1.3E-32 T 22-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RMA_RS00370 ee2f4894144ab0f9f390e6a596bbb053 121 PANTHER PTHR21011 1 106 7.1E-24 T 22-04-2016 RMA_RS00205 89b263b056bd9f617e37fb8a318cee4a 360 SUPERFAMILY SSF52540 5 355 1.2E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00205 89b263b056bd9f617e37fb8a318cee4a 360 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 360 74.486 T 22-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RMA_RS00205 89b263b056bd9f617e37fb8a318cee4a 360 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 5 353 2.6E-54 T 22-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RMA_RS00205 89b263b056bd9f617e37fb8a318cee4a 360 ProSitePatterns PS00618 RecF protein signature 2. 309 327 - T 22-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 RMA_RS00205 89b263b056bd9f617e37fb8a318cee4a 360 ProSitePatterns PS00617 RecF protein signature 1. 120 140 - T 22-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 RMA_RS00205 89b263b056bd9f617e37fb8a318cee4a 360 PANTHER PTHR32182 1 352 9.7E-26 T 22-04-2016 RMA_RS00205 89b263b056bd9f617e37fb8a318cee4a 360 Pfam PF02463 RecF/RecN/SMC N terminal domain 5 350 1.8E-20 T 22-04-2016 IPR003395 RecF/RecN/SMC, N-terminal RMA_RS00205 89b263b056bd9f617e37fb8a318cee4a 360 Gene3D G3DSA:3.40.50.300 174 191 8.0E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00205 89b263b056bd9f617e37fb8a318cee4a 360 Gene3D G3DSA:3.40.50.300 5 140 8.0E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00205 89b263b056bd9f617e37fb8a318cee4a 360 Gene3D G3DSA:3.40.50.300 240 353 8.0E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS07360 9aa6eb763ccd5a1ab1e2db21358f1ddd 316 ProDom PD214932 TRANSMEMBRANE MEMBRANE RP853 1 316 2.0E-174 T 22-04-2016 IPR020180 Uncharacterised protein family RP853 RMA_RS03765 d458a2bfae4591824b9497a08c889dd2 304 Gene3D G3DSA:3.90.226.10 38 149 3.8E-42 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS03765 d458a2bfae4591824b9497a08c889dd2 304 Gene3D G3DSA:3.90.226.10 187 261 3.8E-42 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS03765 d458a2bfae4591824b9497a08c889dd2 304 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 54 259 9.0E-84 T 22-04-2016 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 RMA_RS03765 d458a2bfae4591824b9497a08c889dd2 304 SUPERFAMILY SSF52096 46 157 6.96E-37 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS03765 d458a2bfae4591824b9497a08c889dd2 304 SUPERFAMILY SSF52096 186 248 6.96E-37 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS03765 d458a2bfae4591824b9497a08c889dd2 304 PANTHER PTHR33209 7 260 2.4E-66 T 22-04-2016 RMA_RS03765 d458a2bfae4591824b9497a08c889dd2 304 Pfam PF01343 Peptidase family S49 111 260 5.8E-46 T 22-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RMA_RS06365 826c8d7f1b2d2fa35b11bf6a6a6ec7de 1584 Gene3D G3DSA:3.40.50.720 921 1032 8.4E-36 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS06365 826c8d7f1b2d2fa35b11bf6a6a6ec7de 1584 Gene3D G3DSA:3.40.50.720 1067 1180 8.4E-36 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS06365 826c8d7f1b2d2fa35b11bf6a6a6ec7de 1584 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 95 1575 0.0 T 22-04-2016 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 RMA_RS06365 826c8d7f1b2d2fa35b11bf6a6a6ec7de 1584 SUPERFAMILY SSF53223 736 934 8.34E-21 T 22-04-2016 RMA_RS06365 826c8d7f1b2d2fa35b11bf6a6a6ec7de 1584 SUPERFAMILY SSF51735 1062 1206 3.54E-28 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS06365 826c8d7f1b2d2fa35b11bf6a6a6ec7de 1584 SUPERFAMILY SSF51735 924 1026 3.54E-28 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS06365 826c8d7f1b2d2fa35b11bf6a6a6ec7de 1584 PANTHER PTHR11606:SF1 659 1076 0.0 T 22-04-2016 RMA_RS06365 826c8d7f1b2d2fa35b11bf6a6a6ec7de 1584 PANTHER PTHR11606:SF1 1101 1346 0.0 T 22-04-2016 RMA_RS06365 826c8d7f1b2d2fa35b11bf6a6a6ec7de 1584 PANTHER PTHR11606:SF1 97 152 0.0 T 22-04-2016 RMA_RS06365 826c8d7f1b2d2fa35b11bf6a6a6ec7de 1584 PANTHER PTHR11606:SF1 214 552 0.0 T 22-04-2016 RMA_RS06365 826c8d7f1b2d2fa35b11bf6a6a6ec7de 1584 PIRSF PIRSF036761 1 1584 0.0 T 22-04-2016 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 RMA_RS06365 826c8d7f1b2d2fa35b11bf6a6a6ec7de 1584 PANTHER PTHR11606 659 1076 0.0 T 22-04-2016 RMA_RS06365 826c8d7f1b2d2fa35b11bf6a6a6ec7de 1584 PANTHER PTHR11606 1101 1346 0.0 T 22-04-2016 RMA_RS06365 826c8d7f1b2d2fa35b11bf6a6a6ec7de 1584 PANTHER PTHR11606 97 152 0.0 T 22-04-2016 RMA_RS06365 826c8d7f1b2d2fa35b11bf6a6a6ec7de 1584 PANTHER PTHR11606 214 552 0.0 T 22-04-2016 RMA_RS03995 b9e7f437f43df34dc3e8a3e5aac316e4 197 Pfam PF01695 IstB-like ATP binding protein 54 193 4.9E-42 T 22-04-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 RMA_RS03995 b9e7f437f43df34dc3e8a3e5aac316e4 197 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 100 113 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RMA_RS03995 b9e7f437f43df34dc3e8a3e5aac316e4 197 Gene3D G3DSA:3.40.50.300 82 191 1.2E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03995 b9e7f437f43df34dc3e8a3e5aac316e4 197 SUPERFAMILY SSF52540 65 191 6.81E-17 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03995 b9e7f437f43df34dc3e8a3e5aac316e4 197 PANTHER PTHR30050 1 190 3.1E-33 T 22-04-2016 RMA_RS03995 b9e7f437f43df34dc3e8a3e5aac316e4 197 Gene3D G3DSA:3.40.50.300 14 51 3.7E-5 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS07520 0c44d9937db948eeb09cf5a7f66d1967 69 Gene3D G3DSA:1.25.40.10 2 59 2.6E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS07520 0c44d9937db948eeb09cf5a7f66d1967 69 SUPERFAMILY SSF48452 2 60 6.64E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS03220 3c0353f7500af88f56dd8ef1b79ac869 226 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 3 225 35.895 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RMA_RS03220 3c0353f7500af88f56dd8ef1b79ac869 226 SUPERFAMILY SSF64005 5 220 3.79E-74 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RMA_RS03220 3c0353f7500af88f56dd8ef1b79ac869 226 Pfam PF01255 Putative undecaprenyl diphosphate synthase 10 224 1.4E-74 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RMA_RS03220 3c0353f7500af88f56dd8ef1b79ac869 226 PANTHER PTHR10291 5 226 5.9E-97 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RMA_RS03220 3c0353f7500af88f56dd8ef1b79ac869 226 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 5 224 8.2E-77 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RMA_RS03220 3c0353f7500af88f56dd8ef1b79ac869 226 Gene3D G3DSA:3.40.1180.10 5 225 2.6E-82 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RMA_RS03220 3c0353f7500af88f56dd8ef1b79ac869 226 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 170 187 - T 22-04-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 RMA_RS02740 db7f189a0211ba2caf6868e3037660c2 267 SUPERFAMILY SSF55846 20 175 1.37E-26 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RMA_RS02740 db7f189a0211ba2caf6868e3037660c2 267 Gene3D G3DSA:1.10.101.10 187 232 3.4E-5 T 22-04-2016 IPR002477 Peptidoglycan binding-like RMA_RS02740 db7f189a0211ba2caf6868e3037660c2 267 SUPERFAMILY SSF47090 186 232 2.35E-5 T 22-04-2016 IPR002477 Peptidoglycan binding-like RMA_RS02740 db7f189a0211ba2caf6868e3037660c2 267 Gene3D G3DSA:3.40.80.10 25 174 1.6E-24 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RMA_RS02740 db7f189a0211ba2caf6868e3037660c2 267 PANTHER PTHR30417 53 231 5.5E-15 T 22-04-2016 RMA_RS02740 db7f189a0211ba2caf6868e3037660c2 267 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 31 140 2.1E-6 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RMA_RS02740 db7f189a0211ba2caf6868e3037660c2 267 Pfam PF01471 Putative peptidoglycan binding domain 193 231 2.6E-5 T 22-04-2016 IPR002477 Peptidoglycan binding-like RMA_RS05695 e4cb00cf5b350c4ee32ddd289e8094a3 70 Pfam PF00313 'Cold-shock' DNA-binding domain 7 68 2.1E-22 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RMA_RS05695 e4cb00cf5b350c4ee32ddd289e8094a3 70 PIRSF PIRSF002599 1 70 5.5E-20 T 22-04-2016 IPR012156 Cold shock, CspA GO:0003676 RMA_RS05695 e4cb00cf5b350c4ee32ddd289e8094a3 70 SUPERFAMILY SSF50249 3 68 7.5E-20 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS05695 e4cb00cf5b350c4ee32ddd289e8094a3 70 PANTHER PTHR11544 1 68 9.9E-14 T 22-04-2016 RMA_RS05695 e4cb00cf5b350c4ee32ddd289e8094a3 70 Gene3D G3DSA:2.40.50.140 6 68 1.1E-23 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS05695 e4cb00cf5b350c4ee32ddd289e8094a3 70 SMART SM00357 6 70 8.5E-25 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 RMA_RS05695 e4cb00cf5b350c4ee32ddd289e8094a3 70 PRINTS PR00050 Cold shock protein signature 28 37 4.3E-11 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RMA_RS05695 e4cb00cf5b350c4ee32ddd289e8094a3 70 PRINTS PR00050 Cold shock protein signature 43 61 4.3E-11 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RMA_RS05695 e4cb00cf5b350c4ee32ddd289e8094a3 70 PRINTS PR00050 Cold shock protein signature 7 22 4.3E-11 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RMA_RS05695 e4cb00cf5b350c4ee32ddd289e8094a3 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 22-04-2016 IPR019844 Cold-shock conserved site RMA_RS05840 f589f8fc082ce1220fb7efa72bff9201 454 PANTHER PTHR23508 10 229 7.8E-48 T 22-04-2016 RMA_RS05840 f589f8fc082ce1220fb7efa72bff9201 454 PANTHER PTHR23508 253 440 7.8E-48 T 22-04-2016 RMA_RS05840 f589f8fc082ce1220fb7efa72bff9201 454 SUPERFAMILY SSF103473 246 439 7.85E-32 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS05840 f589f8fc082ce1220fb7efa72bff9201 454 SUPERFAMILY SSF103473 10 209 7.85E-32 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS05840 f589f8fc082ce1220fb7efa72bff9201 454 Pfam PF00083 Sugar (and other) transporter 13 432 9.9E-6 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RMA_RS05840 f589f8fc082ce1220fb7efa72bff9201 454 Gene3D G3DSA:1.20.1250.20 265 441 4.6E-6 T 22-04-2016 RMA_RS05840 f589f8fc082ce1220fb7efa72bff9201 454 Gene3D G3DSA:1.20.1250.20 12 197 1.1E-8 T 22-04-2016 RMA_RS02775 15e0cadd793ca72f1103bf6d895634f6 522 TIGRFAM TIGR00467 lysS_arch: lysine--tRNA ligase 37 518 1.4E-63 T 22-04-2016 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RMA_RS02775 15e0cadd793ca72f1103bf6d895634f6 522 Gene3D G3DSA:3.40.50.620 231 277 4.0E-41 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS02775 15e0cadd793ca72f1103bf6d895634f6 522 Gene3D G3DSA:3.40.50.620 14 194 4.0E-41 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS02775 15e0cadd793ca72f1103bf6d895634f6 522 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 44 53 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS02775 15e0cadd793ca72f1103bf6d895634f6 522 Gene3D G3DSA:1.10.730.10 278 365 3.0E-5 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS02775 15e0cadd793ca72f1103bf6d895634f6 522 Hamap MF_00177 Lysine--tRNA ligase [lysS]. 12 522 30.542 T 22-04-2016 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RMA_RS02775 15e0cadd793ca72f1103bf6d895634f6 522 Pfam PF01921 tRNA synthetases class I (K) 13 366 7.7E-130 T 22-04-2016 RMA_RS02775 15e0cadd793ca72f1103bf6d895634f6 522 Gene3D G3DSA:1.10.10.350 428 519 2.4E-25 T 22-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RMA_RS02775 15e0cadd793ca72f1103bf6d895634f6 522 SUPERFAMILY SSF48163 329 519 1.44E-35 T 22-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RMA_RS02775 15e0cadd793ca72f1103bf6d895634f6 522 SUPERFAMILY SSF52374 13 330 1.26E-64 T 22-04-2016 RMA_RS02775 15e0cadd793ca72f1103bf6d895634f6 522 PANTHER PTHR37940 3 522 3.0E-146 T 22-04-2016 RMA_RS05615 ad4071e067cc217407809a4400f757de 105 SUPERFAMILY SSF54999 4 100 1.96E-33 T 22-04-2016 IPR027486 Ribosomal protein S10 domain RMA_RS05615 ad4071e067cc217407809a4400f757de 105 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 2 101 24.246 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RMA_RS05615 ad4071e067cc217407809a4400f757de 105 PRINTS PR00971 Ribosomal protein S10 family signature 60 74 1.4E-16 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RMA_RS05615 ad4071e067cc217407809a4400f757de 105 PRINTS PR00971 Ribosomal protein S10 family signature 39 54 1.4E-16 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RMA_RS05615 ad4071e067cc217407809a4400f757de 105 PRINTS PR00971 Ribosomal protein S10 family signature 4 17 1.4E-16 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RMA_RS05615 ad4071e067cc217407809a4400f757de 105 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 3 100 8.8E-43 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RMA_RS05615 ad4071e067cc217407809a4400f757de 105 PANTHER PTHR11700 1 102 4.0E-41 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RMA_RS05615 ad4071e067cc217407809a4400f757de 105 Gene3D G3DSA:3.30.70.600 3 102 5.2E-39 T 22-04-2016 IPR027486 Ribosomal protein S10 domain RMA_RS05615 ad4071e067cc217407809a4400f757de 105 Pfam PF00338 Ribosomal protein S10p/S20e 6 99 1.2E-31 T 22-04-2016 IPR027486 Ribosomal protein S10 domain RMA_RS05615 ad4071e067cc217407809a4400f757de 105 SMART SM01403 6 100 3.5E-46 T 22-04-2016 IPR027486 Ribosomal protein S10 domain RMA_RS05355 139379e1e28234b74322c7ec77f69784 253 Pfam PF00950 ABC 3 transport family 4 244 9.0E-40 T 22-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 RMA_RS05355 139379e1e28234b74322c7ec77f69784 253 PANTHER PTHR30477:SF0 5 253 1.4E-37 T 22-04-2016 RMA_RS05355 139379e1e28234b74322c7ec77f69784 253 Gene3D G3DSA:1.10.3470.10 44 250 2.6E-8 T 22-04-2016 IPR029022 ABC transporter, BtuC-like RMA_RS05355 139379e1e28234b74322c7ec77f69784 253 SUPERFAMILY SSF81345 5 250 1.83E-23 T 22-04-2016 IPR029022 ABC transporter, BtuC-like RMA_RS05355 139379e1e28234b74322c7ec77f69784 253 PANTHER PTHR30477 5 253 1.4E-37 T 22-04-2016 RMA_RS01025 ffe0039304b7eaee44609790d8bea006 500 PANTHER PTHR11963 23 500 1.0E-177 T 22-04-2016 RMA_RS01025 ffe0039304b7eaee44609790d8bea006 500 PRINTS PR00481 Cytosol aminopeptidase signature 282 303 4.2E-53 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RMA_RS01025 ffe0039304b7eaee44609790d8bea006 500 PRINTS PR00481 Cytosol aminopeptidase signature 319 340 4.2E-53 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RMA_RS01025 ffe0039304b7eaee44609790d8bea006 500 PRINTS PR00481 Cytosol aminopeptidase signature 370 385 4.2E-53 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RMA_RS01025 ffe0039304b7eaee44609790d8bea006 500 PRINTS PR00481 Cytosol aminopeptidase signature 260 277 4.2E-53 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RMA_RS01025 ffe0039304b7eaee44609790d8bea006 500 PRINTS PR00481 Cytosol aminopeptidase signature 341 361 4.2E-53 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RMA_RS01025 ffe0039304b7eaee44609790d8bea006 500 Gene3D G3DSA:3.40.220.10 8 155 2.9E-17 T 22-04-2016 RMA_RS01025 ffe0039304b7eaee44609790d8bea006 500 PANTHER PTHR11963:SF13 23 500 1.0E-177 T 22-04-2016 RMA_RS01025 ffe0039304b7eaee44609790d8bea006 500 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 2 500 36.798 T 22-04-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 RMA_RS01025 ffe0039304b7eaee44609790d8bea006 500 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 345 352 - T 22-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RMA_RS01025 ffe0039304b7eaee44609790d8bea006 500 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 18 146 1.6E-26 T 22-04-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RMA_RS01025 ffe0039304b7eaee44609790d8bea006 500 Gene3D G3DSA:3.40.630.10 175 498 5.4E-132 T 22-04-2016 RMA_RS01025 ffe0039304b7eaee44609790d8bea006 500 SUPERFAMILY SSF53187 178 498 2.01E-119 T 22-04-2016 RMA_RS01025 ffe0039304b7eaee44609790d8bea006 500 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 184 492 8.3E-118 T 22-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RMA_RS01025 ffe0039304b7eaee44609790d8bea006 500 SUPERFAMILY SSF52949 4 182 8.83E-27 T 22-04-2016 RMA_RS05550 3e3a863542d1daf062a463c690681bb5 179 PIRSF PIRSF002161 1 179 6.0E-66 T 22-04-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 RMA_RS05550 3e3a863542d1daf062a463c690681bb5 179 PANTHER PTHR11994 1 177 1.3E-89 T 22-04-2016 RMA_RS05550 3e3a863542d1daf062a463c690681bb5 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 42.765 T 22-04-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05550 3e3a863542d1daf062a463c690681bb5 179 Gene3D G3DSA:3.30.1440.10 2 178 9.2E-78 T 22-04-2016 IPR022803 Ribosomal protein L5 domain RMA_RS05550 3e3a863542d1daf062a463c690681bb5 179 SUPERFAMILY SSF55282 3 179 9.18E-77 T 22-04-2016 IPR022803 Ribosomal protein L5 domain RMA_RS05550 3e3a863542d1daf062a463c690681bb5 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 22-04-2016 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05550 3e3a863542d1daf062a463c690681bb5 179 Pfam PF00281 Ribosomal protein L5 24 80 4.8E-26 T 22-04-2016 IPR031310 Ribosomal protein L5, N-terminal RMA_RS05550 3e3a863542d1daf062a463c690681bb5 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 1.2E-40 T 22-04-2016 IPR031309 Ribosomal protein L5, C-terminal RMA_RS01990 0d5154f578843ef8bd88016c3785aaaf 121 Pfam PF06250 Protein of unknown function (DUF1016) 15 116 1.6E-30 T 22-04-2016 IPR009362 Protein of unknown function DUF1016 RMA_RS01990 0d5154f578843ef8bd88016c3785aaaf 121 PANTHER PTHR30547 1 116 5.0E-37 T 22-04-2016 RMA_RS01990 0d5154f578843ef8bd88016c3785aaaf 121 PANTHER PTHR30547:SF0 1 116 5.0E-37 T 22-04-2016 RMA_RS06230 d695c71354a63012491a971b73c42d0c 296 Pfam PF04055 Radical SAM superfamily 60 219 1.6E-13 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RMA_RS06230 d695c71354a63012491a971b73c42d0c 296 PIRSF PIRSF005963 1 295 7.9E-135 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RMA_RS06230 d695c71354a63012491a971b73c42d0c 296 SMART SM00729 53 260 9.6E-15 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RMA_RS06230 d695c71354a63012491a971b73c42d0c 296 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 7 42 6.4E-7 T 22-04-2016 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RMA_RS06230 d695c71354a63012491a971b73c42d0c 296 TIGRFAM TIGR00510 lipA: lipoyl synthase 3 287 2.4E-119 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RMA_RS06230 d695c71354a63012491a971b73c42d0c 296 PANTHER PTHR10949 6 285 5.0E-156 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RMA_RS06230 d695c71354a63012491a971b73c42d0c 296 Hamap MF_00206 Lipoyl synthase [lipA]. 1 292 152.054 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RMA_RS06230 d695c71354a63012491a971b73c42d0c 296 SUPERFAMILY SSF102114 21 282 2.49E-63 T 22-04-2016 RMA_RS06230 d695c71354a63012491a971b73c42d0c 296 Gene3D G3DSA:3.20.20.70 22 288 6.5E-70 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RMA_RS00920 e3e64f7a1f13e994f31ca5ee9dbb8594 346 PANTHER PTHR10264:SF51 51 118 3.3E-81 T 22-04-2016 IPR010201 HflK GO:0016021 RMA_RS00920 e3e64f7a1f13e994f31ca5ee9dbb8594 346 PANTHER PTHR10264:SF51 140 336 3.3E-81 T 22-04-2016 IPR010201 HflK GO:0016021 RMA_RS00920 e3e64f7a1f13e994f31ca5ee9dbb8594 346 Pfam PF01145 SPFH domain / Band 7 family 69 261 1.6E-25 T 22-04-2016 IPR001107 Band 7 domain RMA_RS00920 e3e64f7a1f13e994f31ca5ee9dbb8594 346 SMART SM00244 65 246 2.3E-31 T 22-04-2016 IPR001107 Band 7 domain RMA_RS00920 e3e64f7a1f13e994f31ca5ee9dbb8594 346 SUPERFAMILY SSF117892 140 252 9.29E-17 T 22-04-2016 IPR001107 Band 7 domain RMA_RS00920 e3e64f7a1f13e994f31ca5ee9dbb8594 346 TIGRFAM TIGR01933 hflK: HflK protein 67 336 1.2E-71 T 22-04-2016 IPR010201 HflK GO:0016021 RMA_RS00920 e3e64f7a1f13e994f31ca5ee9dbb8594 346 PANTHER PTHR10264 51 118 3.3E-81 T 22-04-2016 IPR001972 Stomatin family GO:0016020 RMA_RS00920 e3e64f7a1f13e994f31ca5ee9dbb8594 346 PANTHER PTHR10264 140 336 3.3E-81 T 22-04-2016 IPR001972 Stomatin family GO:0016020 RMA_RS05095 4140eb8a3fd7f00b22969d69056768c4 449 Gene3D G3DSA:3.40.1190.10 87 311 3.8E-63 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS05095 4140eb8a3fd7f00b22969d69056768c4 449 PANTHER PTHR23135 9 447 8.9E-117 T 22-04-2016 RMA_RS05095 4140eb8a3fd7f00b22969d69056768c4 449 Gene3D G3DSA:3.90.190.20 313 447 1.3E-35 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RMA_RS05095 4140eb8a3fd7f00b22969d69056768c4 449 SUPERFAMILY SSF53623 99 312 1.15E-42 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS05095 4140eb8a3fd7f00b22969d69056768c4 449 SUPERFAMILY SSF53244 314 447 4.73E-31 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RMA_RS05095 4140eb8a3fd7f00b22969d69056768c4 449 Pfam PF01225 Mur ligase family, catalytic domain 25 93 5.4E-7 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS05095 4140eb8a3fd7f00b22969d69056768c4 449 SUPERFAMILY SSF63418 3 95 2.35E-19 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS05095 4140eb8a3fd7f00b22969d69056768c4 449 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 12 449 30.908 T 22-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS05095 4140eb8a3fd7f00b22969d69056768c4 449 Gene3D G3DSA:3.40.1390.10 18 86 1.4E-17 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS05095 4140eb8a3fd7f00b22969d69056768c4 449 Pfam PF08245 Mur ligase middle domain 104 292 6.9E-44 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RMA_RS05095 4140eb8a3fd7f00b22969d69056768c4 449 Pfam PF02875 Mur ligase family, glutamate ligase domain 314 394 6.9E-12 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RMA_RS05095 4140eb8a3fd7f00b22969d69056768c4 449 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 27 448 1.9E-135 T 22-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS05095 4140eb8a3fd7f00b22969d69056768c4 449 PANTHER PTHR23135:SF3 9 447 8.9E-117 T 22-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS03525 cce17b31f0054106f0ee4dee3f006807 363 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 60 354 25.825 T 22-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RMA_RS03525 cce17b31f0054106f0ee4dee3f006807 363 Pfam PF01715 IPP transferase 93 337 8.2E-66 T 22-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RMA_RS03525 cce17b31f0054106f0ee4dee3f006807 363 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 60 339 1.3E-77 T 22-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RMA_RS03525 cce17b31f0054106f0ee4dee3f006807 363 SUPERFAMILY SSF52540 56 123 6.92E-9 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03525 cce17b31f0054106f0ee4dee3f006807 363 SUPERFAMILY SSF52540 223 290 6.92E-9 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03525 cce17b31f0054106f0ee4dee3f006807 363 PANTHER PTHR11088 49 338 5.6E-87 T 22-04-2016 RMA_RS03525 cce17b31f0054106f0ee4dee3f006807 363 Gene3D G3DSA:1.10.287.890 256 337 3.8E-24 T 22-04-2016 RMA_RS03525 cce17b31f0054106f0ee4dee3f006807 363 Gene3D G3DSA:3.40.50.300 56 226 4.2E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03525 cce17b31f0054106f0ee4dee3f006807 363 SUPERFAMILY SSF52540 60 210 8.22E-22 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03865 5a186669977aaf4162d1ce422cea528a 839 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 13 212 1.6E-26 T 22-04-2016 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase RMA_RS03865 5a186669977aaf4162d1ce422cea528a 839 Gene3D G3DSA:3.40.50.300 581 622 7.2E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03865 5a186669977aaf4162d1ce422cea528a 839 SUPERFAMILY SSF52540 409 743 1.8E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03865 5a186669977aaf4162d1ce422cea528a 839 Pfam PF12846 AAA-like domain 461 722 1.7E-14 T 22-04-2016 RMA_RS03865 5a186669977aaf4162d1ce422cea528a 839 PANTHER PTHR38467 460 836 5.0E-20 T 22-04-2016 RMA_RS03865 5a186669977aaf4162d1ce422cea528a 839 Gene3D G3DSA:3.40.50.300 623 749 1.2E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03865 5a186669977aaf4162d1ce422cea528a 839 Gene3D G3DSA:3.40.50.300 460 526 1.2E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05705 7e8aeb3c9581cd1108bb788336a467a1 303 TIGRFAM TIGR03774 RPE2: rickettsial palindromic element RPE2 domain 110 144 4.2E-20 T 22-04-2016 IPR022436 Rickettsia palindromic element RPE2 RMA_RS05705 7e8aeb3c9581cd1108bb788336a467a1 303 SUPERFAMILY SSF53335 15 302 1.47E-74 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS05705 7e8aeb3c9581cd1108bb788336a467a1 303 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 14 303 50.529 T 22-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RMA_RS05705 7e8aeb3c9581cd1108bb788336a467a1 303 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 46 74 - T 22-04-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 RMA_RS05705 7e8aeb3c9581cd1108bb788336a467a1 303 Gene3D G3DSA:1.10.8.100 245 303 1.1E-14 T 22-04-2016 IPR023165 rRNA adenine dimethylase-like RMA_RS05705 7e8aeb3c9581cd1108bb788336a467a1 303 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 15 302 1.1E-80 T 22-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RMA_RS05705 7e8aeb3c9581cd1108bb788336a467a1 303 SMART SM00650 30 236 6.6E-71 T 22-04-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 RMA_RS05705 7e8aeb3c9581cd1108bb788336a467a1 303 PANTHER PTHR11727 142 303 3.8E-89 T 22-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RMA_RS05705 7e8aeb3c9581cd1108bb788336a467a1 303 PANTHER PTHR11727 2 119 3.8E-89 T 22-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RMA_RS05705 7e8aeb3c9581cd1108bb788336a467a1 303 Pfam PF00398 Ribosomal RNA adenine dimethylase 18 303 7.1E-58 T 22-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RMA_RS05705 7e8aeb3c9581cd1108bb788336a467a1 303 Gene3D G3DSA:3.40.50.150 139 237 6.7E-65 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS05705 7e8aeb3c9581cd1108bb788336a467a1 303 Gene3D G3DSA:3.40.50.150 3 102 6.7E-65 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS07365 e61fdfbdbd72196aef4b8e811ae9ca12 48 Gene3D G3DSA:1.20.1250.20 3 44 4.0E-5 T 22-04-2016 RMA_RS07365 e61fdfbdbd72196aef4b8e811ae9ca12 48 SUPERFAMILY SSF103473 5 43 2.09E-7 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS00045 11b376dfa9859137e3bfb612dd37b84d 345 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 151 179 - T 22-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RMA_RS00045 11b376dfa9859137e3bfb612dd37b84d 345 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 133 161 - T 22-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RMA_RS00045 11b376dfa9859137e3bfb612dd37b84d 345 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 161 193 0.0016 T 22-04-2016 IPR001451 Hexapeptide repeat RMA_RS00045 11b376dfa9859137e3bfb612dd37b84d 345 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 236 270 3.3E-5 T 22-04-2016 IPR001451 Hexapeptide repeat RMA_RS00045 11b376dfa9859137e3bfb612dd37b84d 345 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 124 159 1.3E-11 T 22-04-2016 IPR001451 Hexapeptide repeat RMA_RS00045 11b376dfa9859137e3bfb612dd37b84d 345 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 6 339 33.426 T 22-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 RMA_RS00045 11b376dfa9859137e3bfb612dd37b84d 345 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 34 102 7.2E-19 T 22-04-2016 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 UniPathway: UPA00973 RMA_RS00045 11b376dfa9859137e3bfb612dd37b84d 345 Gene3D G3DSA:2.160.10.10 164 323 3.3E-37 T 22-04-2016 RMA_RS00045 11b376dfa9859137e3bfb612dd37b84d 345 Gene3D G3DSA:2.160.10.10 113 163 3.2E-13 T 22-04-2016 RMA_RS00045 11b376dfa9859137e3bfb612dd37b84d 345 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 274 301 0.051 T 22-04-2016 IPR001451 Hexapeptide repeat RMA_RS00045 11b376dfa9859137e3bfb612dd37b84d 345 SUPERFAMILY SSF51161 44 329 1.39E-75 T 22-04-2016 IPR011004 Trimeric LpxA-like RMA_RS00045 11b376dfa9859137e3bfb612dd37b84d 345 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 31 342 1.7E-102 T 22-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 RMA_RS00045 11b376dfa9859137e3bfb612dd37b84d 345 PANTHER PTHR22572 99 309 1.2E-44 T 22-04-2016 RMA_RS00045 11b376dfa9859137e3bfb612dd37b84d 345 PANTHER PTHR22572:SF117 99 309 1.2E-44 T 22-04-2016 RMA_RS02550 f8b31e8bb67dddc0f369ccd65432ba46 264 Pfam PF11019 Protein of unknown function (DUF2608) 7 249 1.6E-57 T 22-04-2016 IPR022565 Protein of unknown function DUF2608 RMA_RS02550 f8b31e8bb67dddc0f369ccd65432ba46 264 SUPERFAMILY SSF56784 155 199 7.73E-5 T 22-04-2016 IPR023214 HAD-like domain RMA_RS02550 f8b31e8bb67dddc0f369ccd65432ba46 264 SUPERFAMILY SSF56784 23 121 7.73E-5 T 22-04-2016 IPR023214 HAD-like domain RMA_RS02550 f8b31e8bb67dddc0f369ccd65432ba46 264 ProDom PD187055 MEMBRANE OUTER PRECURSOR SIGNAL EXPORTED CT371 CPN1072 CPN1073/CP0776/CPJ1073/CPB1118 CP0777 CPJ1072 122 239 7.0E-7 T 22-04-2016 RMA_RS02550 f8b31e8bb67dddc0f369ccd65432ba46 264 Gene3D G3DSA:3.40.50.1000 25 198 3.1E-5 T 22-04-2016 IPR023214 HAD-like domain RMA_RS01050 3bcc01be31612500f6aaee04acdc1b80 236 PANTHER PTHR23291 19 235 4.5E-65 T 22-04-2016 IPR006214 Bax inhibitor 1-related RMA_RS01050 3bcc01be31612500f6aaee04acdc1b80 236 PANTHER PTHR23291:SF42 19 235 4.5E-65 T 22-04-2016 RMA_RS01050 3bcc01be31612500f6aaee04acdc1b80 236 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 22 231 9.0E-58 T 22-04-2016 RMA_RS06885 69a52d3a846d1f98326c11f62a1487f8 1971 Gene3D G3DSA:2.40.128.130 1686 1971 3.0E-42 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS06885 69a52d3a846d1f98326c11f62a1487f8 1971 SUPERFAMILY SSF103515 1650 1971 4.45E-52 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS06885 69a52d3a846d1f98326c11f62a1487f8 1971 Pfam PF03797 Autotransporter beta-domain 1687 1957 3.2E-48 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS06885 69a52d3a846d1f98326c11f62a1487f8 1971 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 1494 1971 3.3E-82 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RMA_RS06885 69a52d3a846d1f98326c11f62a1487f8 1971 SMART SM00869 1688 1961 9.7E-38 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS02875 ab232c5956b0ac82ae8722bbe9143598 537 Pfam PF06418 CTP synthase N-terminus 4 265 1.7E-110 T 22-04-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RMA_RS02875 ab232c5956b0ac82ae8722bbe9143598 537 Hamap MF_01227 CTP synthase [pyrG]. 2 534 46.935 T 22-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RMA_RS02875 ab232c5956b0ac82ae8722bbe9143598 537 Pfam PF00117 Glutamine amidotransferase class-I 300 529 1.4E-54 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RMA_RS02875 ab232c5956b0ac82ae8722bbe9143598 537 SUPERFAMILY SSF52317 288 534 2.37E-68 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RMA_RS02875 ab232c5956b0ac82ae8722bbe9143598 537 TIGRFAM TIGR00337 PyrG: CTP synthase 2 529 7.0E-214 T 22-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RMA_RS02875 ab232c5956b0ac82ae8722bbe9143598 537 SUPERFAMILY SSF52540 1 267 4.52E-111 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02875 ab232c5956b0ac82ae8722bbe9143598 537 Gene3D G3DSA:3.40.50.300 2 283 9.0E-117 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02875 ab232c5956b0ac82ae8722bbe9143598 537 PANTHER PTHR11550 1 533 7.3E-273 T 22-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RMA_RS02875 ab232c5956b0ac82ae8722bbe9143598 537 Gene3D G3DSA:3.40.50.880 286 535 4.0E-93 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RMA_RS01185 4748d4b1766d0dd25ad1ffa05c155549 264 SUPERFAMILY SSF52540 67 181 8.15E-25 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01185 4748d4b1766d0dd25ad1ffa05c155549 264 Gene3D G3DSA:3.40.50.300 49 147 1.8E-24 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01185 4748d4b1766d0dd25ad1ffa05c155549 264 PANTHER PTHR11669 49 147 2.3E-22 T 22-04-2016 RMA_RS01185 4748d4b1766d0dd25ad1ffa05c155549 264 Pfam PF13177 DNA polymerase III, delta subunit 49 147 1.6E-25 T 22-04-2016 RMA_RS01185 4748d4b1766d0dd25ad1ffa05c155549 264 PANTHER PTHR11669:SF8 49 147 2.3E-22 T 22-04-2016 RMA_RS00470 41676e3aabe5548a568436e537c52241 224 Gene3D G3DSA:3.90.45.10 46 219 1.6E-40 T 22-04-2016 IPR023635 Peptide deformylase RMA_RS00470 41676e3aabe5548a568436e537c52241 224 PIRSF PIRSF004749 19 224 2.0E-50 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS00470 41676e3aabe5548a568436e537c52241 224 PANTHER PTHR10458 79 214 1.1E-35 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS00470 41676e3aabe5548a568436e537c52241 224 Pfam PF01327 Polypeptide deformylase 45 202 2.0E-36 T 22-04-2016 IPR023635 Peptide deformylase RMA_RS00470 41676e3aabe5548a568436e537c52241 224 Hamap MF_00163 Peptide deformylase [def]. 38 212 23.657 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS00470 41676e3aabe5548a568436e537c52241 224 SUPERFAMILY SSF56420 36 207 1.83E-40 T 22-04-2016 IPR023635 Peptide deformylase RMA_RS00470 41676e3aabe5548a568436e537c52241 224 PRINTS PR01576 Peptide deformylase signature 71 100 1.4E-18 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS00470 41676e3aabe5548a568436e537c52241 224 PRINTS PR01576 Peptide deformylase signature 152 170 1.4E-18 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS00470 41676e3aabe5548a568436e537c52241 224 PRINTS PR01576 Peptide deformylase signature 171 200 1.4E-18 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS00470 41676e3aabe5548a568436e537c52241 224 PRINTS PR01576 Peptide deformylase signature 140 151 1.4E-18 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS00660 02ac012e5d95c937b4c21ccbd192cc6b 459 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 5 458 36.432 T 22-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 RMA_RS00660 02ac012e5d95c937b4c21ccbd192cc6b 459 SMART SM00840 345 404 7.6E-8 T 22-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 RMA_RS00660 02ac012e5d95c937b4c21ccbd192cc6b 459 Gene3D G3DSA:3.40.50.620 21 314 2.2E-94 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS00660 02ac012e5d95c937b4c21ccbd192cc6b 459 PANTHER PTHR10890 4 457 2.7E-182 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RMA_RS00660 02ac012e5d95c937b4c21ccbd192cc6b 459 Pfam PF09190 DALR domain 346 404 1.0E-4 T 22-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 RMA_RS00660 02ac012e5d95c937b4c21ccbd192cc6b 459 SUPERFAMILY SSF52374 6 322 1.31E-84 T 22-04-2016 RMA_RS00660 02ac012e5d95c937b4c21ccbd192cc6b 459 SUPERFAMILY SSF47323 325 457 1.15E-23 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS00660 02ac012e5d95c937b4c21ccbd192cc6b 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 28 39 5.3E-27 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RMA_RS00660 02ac012e5d95c937b4c21ccbd192cc6b 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 198 216 5.3E-27 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RMA_RS00660 02ac012e5d95c937b4c21ccbd192cc6b 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 229 250 5.3E-27 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RMA_RS00660 02ac012e5d95c937b4c21ccbd192cc6b 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 66 75 5.3E-27 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RMA_RS00660 02ac012e5d95c937b4c21ccbd192cc6b 459 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 6 458 4.5E-146 T 22-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 RMA_RS00660 02ac012e5d95c937b4c21ccbd192cc6b 459 Gene3D G3DSA:1.20.120.640 315 381 1.2E-6 T 22-04-2016 RMA_RS00660 02ac012e5d95c937b4c21ccbd192cc6b 459 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 18 322 3.3E-114 T 22-04-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 RMA_RS02970 59ea81e4a4046317b3d055e183c7d760 320 TIGRFAM TIGR03776 RPE5: rickettsial palindromic element RPE5 domain 47 85 1.1E-13 T 22-04-2016 IPR022438 Rickettsia palindromic element RPE5 RMA_RS02970 59ea81e4a4046317b3d055e183c7d760 320 PANTHER PTHR34183:SF1 144 262 3.5E-43 T 22-04-2016 RMA_RS02970 59ea81e4a4046317b3d055e183c7d760 320 SUPERFAMILY SSF50685 169 262 2.41E-10 T 22-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RMA_RS02970 59ea81e4a4046317b3d055e183c7d760 320 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 169 304 6.1E-40 T 22-04-2016 IPR012997 Rare lipoprotein A RMA_RS02970 59ea81e4a4046317b3d055e183c7d760 320 Pfam PF03330 Lytic transglycolase 166 259 2.9E-24 T 22-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RMA_RS02970 59ea81e4a4046317b3d055e183c7d760 320 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 13 47 1.1E-14 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS02970 59ea81e4a4046317b3d055e183c7d760 320 PANTHER PTHR34183 144 262 3.5E-43 T 22-04-2016 RMA_RS07290 c62c5de76968ae854f867cbf20082e26 231 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 114 230 1.3E-40 T 22-04-2016 IPR011969 Clan AA aspartic peptidase, C-terminal RMA_RS07290 c62c5de76968ae854f867cbf20082e26 231 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 137 148 - T 22-04-2016 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 RMA_RS07290 c62c5de76968ae854f867cbf20082e26 231 SUPERFAMILY SSF50630 116 219 5.63E-19 T 22-04-2016 IPR021109 Aspartic peptidase domain RMA_RS07290 c62c5de76968ae854f867cbf20082e26 231 PANTHER PTHR41535:SF1 48 229 2.5E-19 T 22-04-2016 RMA_RS07290 c62c5de76968ae854f867cbf20082e26 231 Pfam PF13975 gag-polyprotein putative aspartyl protease 127 216 1.8E-19 T 22-04-2016 RMA_RS07290 c62c5de76968ae854f867cbf20082e26 231 PANTHER PTHR41535 48 229 2.5E-19 T 22-04-2016 RMA_RS05455 c4bf17b247c5b59c46e5d5bc6242e2d6 81 SUPERFAMILY SSF103473 6 73 4.71E-5 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS06500 749d3b49d5e80d00611526bd673f6048 94 PANTHER PTHR11964 1 86 9.9E-47 T 22-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RMA_RS06500 749d3b49d5e80d00611526bd673f6048 94 Gene3D G3DSA:3.30.300.10 12 88 7.1E-33 T 22-04-2016 RMA_RS06500 749d3b49d5e80d00611526bd673f6048 94 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 3 89 4.5E-37 T 22-04-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RMA_RS06500 749d3b49d5e80d00611526bd673f6048 94 SUPERFAMILY SSF55973 3 90 1.57E-36 T 22-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RMA_RS04415 d50fb1a6dd7207cd71743d3a9665f709 410 PIRSF PIRSF005572 9 390 1.4E-133 T 22-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RMA_RS04415 d50fb1a6dd7207cd71743d3a9665f709 410 Pfam PF00266 Aminotransferase class-V 12 374 6.0E-90 T 22-04-2016 IPR000192 Aminotransferase class V domain RMA_RS04415 d50fb1a6dd7207cd71743d3a9665f709 410 PANTHER PTHR11601:SF34 11 410 9.1E-248 T 22-04-2016 RMA_RS04415 d50fb1a6dd7207cd71743d3a9665f709 410 SUPERFAMILY SSF53383 12 397 5.05E-108 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RMA_RS04415 d50fb1a6dd7207cd71743d3a9665f709 410 PANTHER PTHR11601 11 410 9.1E-248 T 22-04-2016 RMA_RS04415 d50fb1a6dd7207cd71743d3a9665f709 410 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 202 221 - T 22-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RMA_RS04415 d50fb1a6dd7207cd71743d3a9665f709 410 Gene3D G3DSA:3.40.640.10 23 257 2.3E-98 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RMA_RS04415 d50fb1a6dd7207cd71743d3a9665f709 410 Gene3D G3DSA:3.90.1150.10 258 379 9.3E-46 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RMA_RS04415 d50fb1a6dd7207cd71743d3a9665f709 410 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 8 401 55.877 T 22-04-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 RMA_RS04415 d50fb1a6dd7207cd71743d3a9665f709 410 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 8 410 5.5E-225 T 22-04-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 RMA_RS02665 fcd7fce397bbd8bdace290d37a4745f2 391 Gene3D G3DSA:1.10.645.10 234 374 4.1E-18 T 22-04-2016 IPR029014 NiFe hydrogenase-like RMA_RS02665 fcd7fce397bbd8bdace290d37a4745f2 391 Gene3D G3DSA:1.10.645.10 3 232 7.8E-48 T 22-04-2016 IPR029014 NiFe hydrogenase-like RMA_RS02665 fcd7fce397bbd8bdace290d37a4745f2 391 PANTHER PTHR11993 3 386 5.1E-248 T 22-04-2016 RMA_RS02665 fcd7fce397bbd8bdace290d37a4745f2 391 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 121 391 2.6E-126 T 22-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 RMA_RS02665 fcd7fce397bbd8bdace290d37a4745f2 391 PANTHER PTHR11993:SF10 3 386 5.1E-248 T 22-04-2016 RMA_RS02665 fcd7fce397bbd8bdace290d37a4745f2 391 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 44 55 - T 22-04-2016 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 RMA_RS02665 fcd7fce397bbd8bdace290d37a4745f2 391 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 2 391 49.887 T 22-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 RMA_RS02665 fcd7fce397bbd8bdace290d37a4745f2 391 SUPERFAMILY SSF56762 17 391 3.92E-141 T 22-04-2016 IPR029014 NiFe hydrogenase-like RMA_RS02665 fcd7fce397bbd8bdace290d37a4745f2 391 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 7 391 1.2E-194 T 22-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 RMA_RS00775 19e17a62a9634ac882e754b689b08790 97 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 56 4.2E-22 T 22-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00775 19e17a62a9634ac882e754b689b08790 97 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 68 19.901 T 22-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00775 19e17a62a9634ac882e754b689b08790 97 Gene3D G3DSA:2.30.170.40 2 76 2.9E-24 T 22-04-2016 RMA_RS00775 19e17a62a9634ac882e754b689b08790 97 Pfam PF00830 Ribosomal L28 family 3 61 4.6E-18 T 22-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 RMA_RS00775 19e17a62a9634ac882e754b689b08790 97 PANTHER PTHR13528 1 90 1.5E-21 T 22-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 RMA_RS00775 19e17a62a9634ac882e754b689b08790 97 SUPERFAMILY SSF143800 1 84 2.16E-22 T 22-04-2016 RMA_RS02675 9f2f1f7bcb13ed0bc84e0b2afe94e3aa 174 PANTHER PTHR11995 21 163 7.3E-121 T 22-04-2016 RMA_RS02675 9f2f1f7bcb13ed0bc84e0b2afe94e3aa 174 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 47 156 7.1E-22 T 22-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RMA_RS02675 9f2f1f7bcb13ed0bc84e0b2afe94e3aa 174 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 21 162 1.5E-77 T 22-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RMA_RS02675 9f2f1f7bcb13ed0bc84e0b2afe94e3aa 174 Gene3D G3DSA:3.40.50.700 32 160 3.3E-33 T 22-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RMA_RS02675 9f2f1f7bcb13ed0bc84e0b2afe94e3aa 174 SUPERFAMILY SSF56770 19 164 2.09E-67 T 22-04-2016 RMA_RS02675 9f2f1f7bcb13ed0bc84e0b2afe94e3aa 174 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 128 144 - T 22-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RMA_RS02675 9f2f1f7bcb13ed0bc84e0b2afe94e3aa 174 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 10 161 42.777 T 22-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RMA_RS02675 9f2f1f7bcb13ed0bc84e0b2afe94e3aa 174 PANTHER PTHR11995:SF19 21 163 7.3E-121 T 22-04-2016 RMA_RS00740 9f63ff3313e94c5706110980e4d8aa9c 251 Gene3D G3DSA:3.40.50.300 8 241 1.9E-66 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00740 9f63ff3313e94c5706110980e4d8aa9c 251 SMART SM00382 32 219 1.5E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS00740 9f63ff3313e94c5706110980e4d8aa9c 251 Pfam PF00005 ABC transporter 23 169 5.7E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS00740 9f63ff3313e94c5706110980e4d8aa9c 251 SUPERFAMILY SSF52540 8 235 2.66E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00740 9f63ff3313e94c5706110980e4d8aa9c 251 PANTHER PTHR24220:SF567 9 250 7.6E-104 T 22-04-2016 RMA_RS00740 9f63ff3313e94c5706110980e4d8aa9c 251 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS00740 9f63ff3313e94c5706110980e4d8aa9c 251 PANTHER PTHR24220 9 250 7.6E-104 T 22-04-2016 RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 Gene3D G3DSA:3.40.50.10050 632 710 7.6E-24 T 22-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 SUPERFAMILY SSF50447 733 829 1.67E-29 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 Gene3D G3DSA:3.40.50.300 323 490 4.2E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 248 830 8.7E-235 T 22-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 332 485 1.1E-29 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 SUPERFAMILY SSF52540 322 500 1.27E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 Pfam PF11987 Translation-initiation factor 2 625 721 6.4E-37 T 22-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 Gene3D G3DSA:2.40.30.10 504 594 2.0E-21 T 22-04-2016 RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 PANTHER PTHR23115 307 659 1.2E-191 T 22-04-2016 RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 PANTHER PTHR23115 684 831 1.2E-191 T 22-04-2016 RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 SUPERFAMILY SSF50447 505 585 1.55E-21 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 PANTHER PTHR23115:SF184 307 659 1.2E-191 T 22-04-2016 RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 PANTHER PTHR23115:SF184 684 831 1.2E-191 T 22-04-2016 RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 257 304 7.4E-12 T 22-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 SUPERFAMILY SSF52156 622 738 3.01E-37 T 22-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 Gene3D G3DSA:2.40.30.10 733 829 2.7E-35 T 22-04-2016 RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 Pfam PF00009 Elongation factor Tu GTP binding domain 333 491 3.2E-31 T 22-04-2016 RMA_RS04590 1cc5e4cac7a5d54dc536457375587a45 831 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 16 829 16.477 T 22-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RMA_RS01085 cb632781dc46dc08f45757bf230ac866 186 Hamap MF_00040 Ribosome-recycling factor [frr]. 4 186 26.206 T 22-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RMA_RS01085 cb632781dc46dc08f45757bf230ac866 186 SUPERFAMILY SSF55194 5 185 7.98E-67 T 22-04-2016 IPR023584 Ribosome recycling factor domain RMA_RS01085 cb632781dc46dc08f45757bf230ac866 186 Pfam PF01765 Ribosome recycling factor 22 184 7.2E-60 T 22-04-2016 IPR023584 Ribosome recycling factor domain RMA_RS01085 cb632781dc46dc08f45757bf230ac866 186 TIGRFAM TIGR00496 frr: ribosome recycling factor 13 186 1.7E-68 T 22-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RMA_RS01085 cb632781dc46dc08f45757bf230ac866 186 PANTHER PTHR20982 6 186 1.2E-70 T 22-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RMA_RS01085 cb632781dc46dc08f45757bf230ac866 186 Gene3D G3DSA:1.10.132.20 68 186 1.9E-41 T 22-04-2016 IPR023584 Ribosome recycling factor domain RMA_RS07400 4d903a1fe804e80dc3a3ff8db3753b21 346 TIGRFAM TIGR00109 hemH: ferrochelatase 6 313 1.6E-82 T 22-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RMA_RS07400 4d903a1fe804e80dc3a3ff8db3753b21 346 Gene3D G3DSA:3.40.50.1400 197 314 4.3E-37 T 22-04-2016 RMA_RS07400 4d903a1fe804e80dc3a3ff8db3753b21 346 Pfam PF00762 Ferrochelatase 9 312 1.7E-92 T 22-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RMA_RS07400 4d903a1fe804e80dc3a3ff8db3753b21 346 Hamap MF_00323 Ferrochelatase [hemH]. 7 316 33.312 T 22-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RMA_RS07400 4d903a1fe804e80dc3a3ff8db3753b21 346 SUPERFAMILY SSF53800 6 320 2.13E-87 T 22-04-2016 RMA_RS07400 4d903a1fe804e80dc3a3ff8db3753b21 346 Gene3D G3DSA:3.40.50.1400 7 196 3.0E-49 T 22-04-2016 RMA_RS07400 4d903a1fe804e80dc3a3ff8db3753b21 346 ProSitePatterns PS00534 Ferrochelatase signature. 187 205 - T 22-04-2016 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RMA_RS07400 4d903a1fe804e80dc3a3ff8db3753b21 346 PANTHER PTHR11108 4 311 6.3E-93 T 22-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RMA_RS03585 0fa1accadbd48ee734b833b1ccd1ba1b 1027 Pfam PF12574 120 KDa Rickettsia surface antigen 106 354 2.6E-139 T 22-04-2016 IPR020954 Rickettsia surface antigen, 120kDa RMA_RS03545 c7573afefda72b955b7c27ebbf34fe2e 169 Pfam PF03968 OstA-like protein 58 164 9.8E-9 T 22-04-2016 IPR005653 Organic solvent tolerance-like, N-terminal RMA_RS03545 c7573afefda72b955b7c27ebbf34fe2e 169 Gene3D G3DSA:2.60.450.10 55 164 9.7E-17 T 22-04-2016 RMA_RS03545 c7573afefda72b955b7c27ebbf34fe2e 169 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 1 33 2.2E-15 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS00915 ff9652e61a0d9883e0660e7148c99faf 319 PANTHER PTHR23264 94 306 1.3E-97 T 22-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RMA_RS00915 ff9652e61a0d9883e0660e7148c99faf 319 SUPERFAMILY SSF52540 85 307 1.51E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00915 ff9652e61a0d9883e0660e7148c99faf 319 ProSitePatterns PS01215 Mrp family signature. 201 217 - T 22-04-2016 IPR000808 Mrp, conserved site GO:0005524 RMA_RS00915 ff9652e61a0d9883e0660e7148c99faf 319 Gene3D G3DSA:3.40.50.300 90 307 9.5E-81 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00915 ff9652e61a0d9883e0660e7148c99faf 319 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 95 306 7.5E-79 T 22-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RMA_RS00915 ff9652e61a0d9883e0660e7148c99faf 319 Hamap MF_02040 Iron-sulfur cluster carrier protein. 80 318 33.544 T 22-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RMA_RS05540 ca11e07becf456d14bd3cd3bec7ade65 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RMA_RS05540 ca11e07becf456d14bd3cd3bec7ade65 132 Pfam PF00410 Ribosomal protein S8 5 132 2.0E-42 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RMA_RS05540 ca11e07becf456d14bd3cd3bec7ade65 132 Gene3D G3DSA:3.30.1490.10 76 132 9.0E-23 T 22-04-2016 RMA_RS05540 ca11e07becf456d14bd3cd3bec7ade65 132 PANTHER PTHR11758 1 132 5.4E-40 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RMA_RS05540 ca11e07becf456d14bd3cd3bec7ade65 132 SUPERFAMILY SSF56047 2 132 1.96E-43 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RMA_RS05540 ca11e07becf456d14bd3cd3bec7ade65 132 Gene3D G3DSA:3.30.1370.30 2 70 1.2E-23 T 22-04-2016 RMA_RS05540 ca11e07becf456d14bd3cd3bec7ade65 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 27.273 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RMA_RS02645 d5338069e48e9306a9442babac5a2dcf 181 Gene3D G3DSA:3.10.300.10 4 171 4.1E-51 T 22-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 RMA_RS02645 d5338069e48e9306a9442babac5a2dcf 181 SUPERFAMILY SSF50486 5 171 8.63E-57 T 22-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 RMA_RS02645 d5338069e48e9306a9442babac5a2dcf 181 PANTHER PTHR10429 1 169 4.2E-52 T 22-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 RMA_RS02645 d5338069e48e9306a9442babac5a2dcf 181 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 7 172 1.4E-41 T 22-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 RMA_RS02645 d5338069e48e9306a9442babac5a2dcf 181 PANTHER PTHR10429:SF0 1 169 4.2E-52 T 22-04-2016 RMA_RS02645 d5338069e48e9306a9442babac5a2dcf 181 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 9 176 30.373 T 22-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 RMA_RS02645 d5338069e48e9306a9442babac5a2dcf 181 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 10 171 8.9E-52 T 22-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 RMA_RS02585 b1e97a2926db5dc292bb43f625514ef7 305 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 21 296 3.8E-108 T 22-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 RMA_RS02585 b1e97a2926db5dc292bb43f625514ef7 305 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 73 95 - T 22-04-2016 IPR030470 UbiA prenyltransferase conserved site RMA_RS02585 b1e97a2926db5dc292bb43f625514ef7 305 PANTHER PTHR11048:SF3 19 294 4.8E-73 T 22-04-2016 RMA_RS02585 b1e97a2926db5dc292bb43f625514ef7 305 PANTHER PTHR11048 19 294 4.8E-73 T 22-04-2016 RMA_RS02585 b1e97a2926db5dc292bb43f625514ef7 305 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 19 300 19.407 T 22-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 RMA_RS02585 b1e97a2926db5dc292bb43f625514ef7 305 Pfam PF01040 UbiA prenyltransferase family 36 283 7.4E-57 T 22-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 22 533 2.6E-221 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 Pfam PF00575 S1 RNA binding domain 201 273 7.2E-19 T 22-04-2016 IPR003029 S1 domain GO:0003676 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 Pfam PF00575 S1 RNA binding domain 287 360 2.1E-18 T 22-04-2016 IPR003029 S1 domain GO:0003676 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 Pfam PF00575 S1 RNA binding domain 37 99 1.7E-4 T 22-04-2016 IPR003029 S1 domain GO:0003676 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 Pfam PF00575 S1 RNA binding domain 376 447 3.3E-13 T 22-04-2016 IPR003029 S1 domain GO:0003676 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 Pfam PF00575 S1 RNA binding domain 117 184 8.6E-7 T 22-04-2016 IPR003029 S1 domain GO:0003676 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 Pfam PF00575 S1 RNA binding domain 461 533 1.5E-12 T 22-04-2016 IPR003029 S1 domain GO:0003676 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 SUPERFAMILY SSF50249 31 125 6.73E-17 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 Gene3D G3DSA:2.40.50.140 205 285 3.9E-29 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 SUPERFAMILY SSF50249 359 453 7.01E-20 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 SMART SM00316 37 100 2.2E-10 T 22-04-2016 IPR022967 RNA-binding domain, S1 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 SMART SM00316 288 360 4.6E-23 T 22-04-2016 IPR022967 RNA-binding domain, S1 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 SMART SM00316 203 273 2.2E-26 T 22-04-2016 IPR022967 RNA-binding domain, S1 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 SMART SM00316 116 184 3.0E-6 T 22-04-2016 IPR022967 RNA-binding domain, S1 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 SMART SM00316 462 533 5.0E-17 T 22-04-2016 IPR022967 RNA-binding domain, S1 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 SMART SM00316 375 447 2.4E-20 T 22-04-2016 IPR022967 RNA-binding domain, S1 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 PRINTS PR00681 Ribosomal protein S1 signature 57 71 2.5E-72 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 PRINTS PR00681 Ribosomal protein S1 signature 139 156 2.5E-72 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 PRINTS PR00681 Ribosomal protein S1 signature 303 322 2.5E-72 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 PRINTS PR00681 Ribosomal protein S1 signature 39 57 2.5E-72 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 PRINTS PR00681 Ribosomal protein S1 signature 225 246 2.5E-72 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 PRINTS PR00681 Ribosomal protein S1 signature 97 116 2.5E-72 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 PRINTS PR00681 Ribosomal protein S1 signature 121 137 2.5E-72 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 PRINTS PR00681 Ribosomal protein S1 signature 343 361 2.5E-72 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 PRINTS PR00681 Ribosomal protein S1 signature 168 188 2.5E-72 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 SUPERFAMILY SSF50249 117 198 2.5E-13 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 PIRSF PIRSF002111 6 547 5.1E-204 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 SUPERFAMILY SSF50249 442 551 6.29E-20 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 Gene3D G3DSA:2.40.50.140 286 361 3.7E-27 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 Gene3D G3DSA:2.40.50.140 457 534 1.1E-17 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 Gene3D G3DSA:2.40.50.140 110 185 1.8E-11 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 SUPERFAMILY SSF50249 269 366 1.14E-24 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 Gene3D G3DSA:2.40.50.140 371 456 6.1E-23 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 Gene3D G3DSA:2.40.50.140 35 109 5.6E-9 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 PANTHER PTHR10724:SF6 13 527 1.9E-191 T 22-04-2016 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 PANTHER PTHR10724 13 527 1.9E-191 T 22-04-2016 RMA_RS04055 7a79f0d1cb97f6a16eaf3076fbaa3526 568 SUPERFAMILY SSF50249 203 290 8.95E-26 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS05650 1ddda8a8ac793faf516925e350badae8 81 Gene3D G3DSA:3.40.1620.10 7 44 5.5E-5 T 22-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RMA_RS05650 1ddda8a8ac793faf516925e350badae8 81 SUPERFAMILY SSF143120 8 46 5.23E-7 T 22-04-2016 RMA_RS05650 1ddda8a8ac793faf516925e350badae8 81 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 12 59 3.5E-6 T 22-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RMA_RS07270 e79e6936a464a3c19e7fb9dd0e10ee31 240 Gene3D G3DSA:3.40.50.300 1 233 5.4E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS07270 e79e6936a464a3c19e7fb9dd0e10ee31 240 SUPERFAMILY SSF52540 2 225 1.95E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS07270 e79e6936a464a3c19e7fb9dd0e10ee31 240 PIRSF PIRSF039085 1 238 3.6E-85 T 22-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RMA_RS07270 e79e6936a464a3c19e7fb9dd0e10ee31 240 PANTHER PTHR24220 3 236 8.5E-104 T 22-04-2016 RMA_RS07270 e79e6936a464a3c19e7fb9dd0e10ee31 240 PANTHER PTHR24220:SF327 3 236 8.5E-104 T 22-04-2016 RMA_RS07270 e79e6936a464a3c19e7fb9dd0e10ee31 240 Pfam PF00005 ABC transporter 18 163 3.6E-36 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS07270 e79e6936a464a3c19e7fb9dd0e10ee31 240 SMART SM00382 26 210 2.9E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS07405 847706885650d252bb142611adeb84e2 346 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 1 338 45.715 T 22-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS07405 847706885650d252bb142611adeb84e2 346 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 8 335 3.8E-129 T 22-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS07405 847706885650d252bb142611adeb84e2 346 Gene3D G3DSA:3.20.20.210 14 339 1.1E-115 T 22-04-2016 RMA_RS07405 847706885650d252bb142611adeb84e2 346 PANTHER PTHR21091 15 340 3.2E-110 T 22-04-2016 RMA_RS07405 847706885650d252bb142611adeb84e2 346 PANTHER PTHR21091:SF2 15 340 3.2E-110 T 22-04-2016 RMA_RS07405 847706885650d252bb142611adeb84e2 346 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 16 25 - T 22-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS07405 847706885650d252bb142611adeb84e2 346 SUPERFAMILY SSF51726 13 339 5.93E-96 T 22-04-2016 RMA_RS07405 847706885650d252bb142611adeb84e2 346 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 14 335 3.5E-107 T 22-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS07405 847706885650d252bb142611adeb84e2 346 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 134 150 - T 22-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS05545 544abfdbc6ac3ec30581634ce5cd7e2d 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 22-04-2016 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 RMA_RS05545 544abfdbc6ac3ec30581634ce5cd7e2d 101 PANTHER PTHR19836 1 101 1.7E-45 T 22-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05545 544abfdbc6ac3ec30581634ce5cd7e2d 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 24.941 T 22-04-2016 IPR023036 Ribosomal protein S14, bacterial/plastid RMA_RS05545 544abfdbc6ac3ec30581634ce5cd7e2d 101 Gene3D G3DSA:4.10.830.10 42 101 1.3E-28 T 22-04-2016 RMA_RS05545 544abfdbc6ac3ec30581634ce5cd7e2d 101 SUPERFAMILY SSF57716 2 101 2.64E-32 T 22-04-2016 RMA_RS05545 544abfdbc6ac3ec30581634ce5cd7e2d 101 Pfam PF00253 Ribosomal protein S14p/S29e 48 100 2.6E-24 T 22-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS06100 6d100b6f8775ec5863ce31ad50eeaee9 157 Gene3D G3DSA:2.30.30.220 2 114 9.9E-41 T 22-04-2016 IPR007481 Stringent starvation protein B RMA_RS06100 6d100b6f8775ec5863ce31ad50eeaee9 157 SUPERFAMILY SSF101738 3 114 1.07E-35 T 22-04-2016 IPR007481 Stringent starvation protein B RMA_RS06100 6d100b6f8775ec5863ce31ad50eeaee9 157 Pfam PF04386 Stringent starvation protein B 9 136 5.0E-28 T 22-04-2016 IPR007481 Stringent starvation protein B RMA_RS03235 f5b4befcf7b91154bb7d0ca7e9683e76 290 SUPERFAMILY SSF56752 12 285 2.09E-75 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RMA_RS03235 f5b4befcf7b91154bb7d0ca7e9683e76 290 PANTHER PTHR11825:SF7 13 290 2.0E-71 T 22-04-2016 RMA_RS03235 f5b4befcf7b91154bb7d0ca7e9683e76 290 PANTHER PTHR11825 13 290 2.0E-71 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RMA_RS03235 f5b4befcf7b91154bb7d0ca7e9683e76 290 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 14 289 3.1E-74 T 22-04-2016 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|UniPathway: UPA00047|UniPathway: UPA00048|UniPathway: UPA00049 RMA_RS03235 f5b4befcf7b91154bb7d0ca7e9683e76 290 Gene3D G3DSA:3.20.10.10 128 289 6.5E-43 T 22-04-2016 RMA_RS03235 f5b4befcf7b91154bb7d0ca7e9683e76 290 Gene3D G3DSA:3.30.470.10 2 111 5.0E-38 T 22-04-2016 RMA_RS03235 f5b4befcf7b91154bb7d0ca7e9683e76 290 Pfam PF01063 Amino-transferase class IV 40 262 1.8E-51 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RMA_RS03235 f5b4befcf7b91154bb7d0ca7e9683e76 290 ProSitePatterns PS00770 Aminotransferases class-IV signature. 189 217 - T 22-04-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 RMA_RS02655 de362b875f54ced57202d8d0d2d8be13 167 PANTHER PTHR10371 2 167 3.7E-97 T 22-04-2016 RMA_RS02655 de362b875f54ced57202d8d0d2d8be13 167 Gene3D G3DSA:3.40.30.10 85 163 1.5E-13 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS02655 de362b875f54ced57202d8d0d2d8be13 167 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 18 165 1.2E-66 T 22-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RMA_RS02655 de362b875f54ced57202d8d0d2d8be13 167 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 19 165 1.4E-64 T 22-04-2016 RMA_RS02655 de362b875f54ced57202d8d0d2d8be13 167 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 122 140 - T 22-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RMA_RS02655 de362b875f54ced57202d8d0d2d8be13 167 PIRSF PIRSF000216 1 167 9.8E-77 T 22-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RMA_RS02655 de362b875f54ced57202d8d0d2d8be13 167 PANTHER PTHR10371:SF3 2 167 3.7E-97 T 22-04-2016 RMA_RS02655 de362b875f54ced57202d8d0d2d8be13 167 SUPERFAMILY SSF52833 10 166 5.14E-58 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS03900 bdca71fa658eae017b105210abbb40f5 291 Gene3D G3DSA:3.40.30.10 184 276 3.5E-7 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS03900 bdca71fa658eae017b105210abbb40f5 291 Pfam PF13728 F plasmid transfer operon protein 64 280 3.6E-49 T 22-04-2016 RMA_RS03900 bdca71fa658eae017b105210abbb40f5 291 SUPERFAMILY SSF52833 179 283 5.21E-7 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS07235 399bcfc58a7684cb920ec8289091e92b 381 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 3 380 1.1E-158 T 22-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 RMA_RS07235 399bcfc58a7684cb920ec8289091e92b 381 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 1 381 43.183 T 22-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 RMA_RS07235 399bcfc58a7684cb920ec8289091e92b 381 Pfam PF01546 Peptidase family M20/M25/M40 66 378 3.8E-37 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RMA_RS07235 399bcfc58a7684cb920ec8289091e92b 381 Pfam PF07687 Peptidase dimerisation domain 179 286 4.2E-20 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain RMA_RS07235 399bcfc58a7684cb920ec8289091e92b 381 PANTHER PTHR11014 2 381 3.2E-72 T 22-04-2016 RMA_RS07235 399bcfc58a7684cb920ec8289091e92b 381 Gene3D G3DSA:3.40.630.10 324 380 1.8E-63 T 22-04-2016 RMA_RS07235 399bcfc58a7684cb920ec8289091e92b 381 Gene3D G3DSA:3.40.630.10 3 191 1.8E-63 T 22-04-2016 RMA_RS07235 399bcfc58a7684cb920ec8289091e92b 381 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 101 139 - T 22-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RMA_RS07235 399bcfc58a7684cb920ec8289091e92b 381 SUPERFAMILY SSF53187 300 380 5.19E-55 T 22-04-2016 RMA_RS07235 399bcfc58a7684cb920ec8289091e92b 381 SUPERFAMILY SSF53187 3 182 5.19E-55 T 22-04-2016 RMA_RS07235 399bcfc58a7684cb920ec8289091e92b 381 SUPERFAMILY SSF55031 183 294 5.23E-25 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain RMA_RS07235 399bcfc58a7684cb920ec8289091e92b 381 Gene3D G3DSA:3.30.70.360 192 294 8.7E-36 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain RMA_RS04965 45be0b3b14918ebaba62b03c001ba1c1 286 PANTHER PTHR19288 6 284 1.8E-42 T 22-04-2016 RMA_RS04965 45be0b3b14918ebaba62b03c001ba1c1 286 Pfam PF13344 Haloacid dehalogenase-like hydrolase 19 95 3.2E-11 T 22-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA RMA_RS04965 45be0b3b14918ebaba62b03c001ba1c1 286 Pfam PF13242 HAD-hyrolase-like 200 284 2.3E-19 T 22-04-2016 RMA_RS04965 45be0b3b14918ebaba62b03c001ba1c1 286 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 19 249 2.5E-62 T 22-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA RMA_RS04965 45be0b3b14918ebaba62b03c001ba1c1 286 Gene3D G3DSA:3.40.50.1000 198 283 4.0E-33 T 22-04-2016 IPR023214 HAD-like domain RMA_RS04965 45be0b3b14918ebaba62b03c001ba1c1 286 Gene3D G3DSA:3.40.50.1000 6 82 4.0E-33 T 22-04-2016 IPR023214 HAD-like domain RMA_RS04965 45be0b3b14918ebaba62b03c001ba1c1 286 SUPERFAMILY SSF56784 15 258 4.75E-35 T 22-04-2016 IPR023214 HAD-like domain RMA_RS04965 45be0b3b14918ebaba62b03c001ba1c1 286 TIGRFAM TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family 9 248 7.2E-111 T 22-04-2016 IPR006356 HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 RMA_RS04965 45be0b3b14918ebaba62b03c001ba1c1 286 PANTHER PTHR19288:SF3 6 284 1.8E-42 T 22-04-2016 RMA_RS03665 c13363976f1a1a68dd11058cb4310181 598 Pfam PF01734 Patatin-like phospholipase 66 276 4.5E-29 T 22-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 RMA_RS03665 c13363976f1a1a68dd11058cb4310181 598 Gene3D G3DSA:3.40.1090.10 55 275 5.5E-16 T 22-04-2016 RMA_RS03665 c13363976f1a1a68dd11058cb4310181 598 PANTHER PTHR14226 65 272 2.6E-21 T 22-04-2016 RMA_RS03665 c13363976f1a1a68dd11058cb4310181 598 SUPERFAMILY SSF52151 305 409 4.45E-38 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RMA_RS03665 c13363976f1a1a68dd11058cb4310181 598 SUPERFAMILY SSF52151 24 272 4.45E-38 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RMA_RS01645 f71f685d87210df9ad60aadd8884f9c0 165 SMART SM00382 5 164 3.6E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS01645 f71f685d87210df9ad60aadd8884f9c0 165 SUPERFAMILY SSF52540 1 153 1.21E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01645 f71f685d87210df9ad60aadd8884f9c0 165 Gene3D G3DSA:3.40.50.300 1 154 9.7E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01645 f71f685d87210df9ad60aadd8884f9c0 165 ProSitePatterns PS00211 ABC transporters family signature. 117 131 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS01645 f71f685d87210df9ad60aadd8884f9c0 165 PANTHER PTHR24221 1 153 8.8E-76 T 22-04-2016 RMA_RS01645 f71f685d87210df9ad60aadd8884f9c0 165 Pfam PF00005 ABC transporter 1 145 5.9E-32 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS02235 85a4f487d43e26df59d25c3422f5cf5e 294 Pfam PF02511 Thymidylate synthase complementing protein 30 241 3.7E-57 T 22-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 RMA_RS02235 85a4f487d43e26df59d25c3422f5cf5e 294 SUPERFAMILY SSF69796 20 255 2.62E-72 T 22-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 RMA_RS02235 85a4f487d43e26df59d25c3422f5cf5e 294 PANTHER PTHR34934 22 293 5.2E-53 T 22-04-2016 RMA_RS02235 85a4f487d43e26df59d25c3422f5cf5e 294 TIGRFAM TIGR02170 thyX: thymidylate synthase, flavin-dependent 28 247 2.3E-72 T 22-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 RMA_RS02235 85a4f487d43e26df59d25c3422f5cf5e 294 Hamap MF_01408 Thymidylate synthase ThyX [thyX]. 24 255 29.881 T 22-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 RMA_RS02725 f89404ab4b8a3e2e8f54d82a608eb288 260 SUPERFAMILY SSF51735 7 255 1.94E-61 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS02725 f89404ab4b8a3e2e8f54d82a608eb288 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 253 1.6E-82 T 22-04-2016 RMA_RS02725 f89404ab4b8a3e2e8f54d82a608eb288 260 PANTHER PTHR24322 13 144 1.6E-47 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS02725 f89404ab4b8a3e2e8f54d82a608eb288 260 PANTHER PTHR24322 160 192 1.6E-47 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS02725 f89404ab4b8a3e2e8f54d82a608eb288 260 PANTHER PTHR24322:SF317 13 144 1.6E-47 T 22-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RMA_RS02725 f89404ab4b8a3e2e8f54d82a608eb288 260 PANTHER PTHR24322:SF317 160 192 1.6E-47 T 22-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RMA_RS02725 f89404ab4b8a3e2e8f54d82a608eb288 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.8E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS02725 f89404ab4b8a3e2e8f54d82a608eb288 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.8E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS02725 f89404ab4b8a3e2e8f54d82a608eb288 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.8E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS02725 f89404ab4b8a3e2e8f54d82a608eb288 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 2.8E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS02725 f89404ab4b8a3e2e8f54d82a608eb288 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 2.8E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS02725 f89404ab4b8a3e2e8f54d82a608eb288 260 Gene3D G3DSA:3.40.50.720 8 202 2.0E-61 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS02725 f89404ab4b8a3e2e8f54d82a608eb288 260 PIRSF PIRSF000094 3 260 5.5E-119 T 22-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RMA_RS07115 1b9d3b9dd9d37ea0d87900f50351ce8a 511 Gene3D G3DSA:3.40.50.150 90 291 9.6E-61 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS07115 1b9d3b9dd9d37ea0d87900f50351ce8a 511 Gene3D G3DSA:3.40.50.150 336 476 3.8E-9 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS07115 1b9d3b9dd9d37ea0d87900f50351ce8a 511 PANTHER PTHR18895 7 323 2.5E-90 T 22-04-2016 RMA_RS07115 1b9d3b9dd9d37ea0d87900f50351ce8a 511 Pfam PF05175 Methyltransferase small domain 127 217 1.7E-16 T 22-04-2016 IPR007848 Methyltransferase small domain GO:0008168 RMA_RS07115 1b9d3b9dd9d37ea0d87900f50351ce8a 511 SUPERFAMILY SSF53335 13 278 1.94E-57 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS07115 1b9d3b9dd9d37ea0d87900f50351ce8a 511 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 27 289 1.0E-83 T 22-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RMA_RS07115 1b9d3b9dd9d37ea0d87900f50351ce8a 511 PANTHER PTHR18895:SF64 7 323 2.5E-90 T 22-04-2016 RMA_RS07115 1b9d3b9dd9d37ea0d87900f50351ce8a 511 Gene3D G3DSA:1.10.8.10 4 88 5.4E-26 T 22-04-2016 RMA_RS07115 1b9d3b9dd9d37ea0d87900f50351ce8a 511 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 5 290 7.7E-76 T 22-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 RMA_RS07115 1b9d3b9dd9d37ea0d87900f50351ce8a 511 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 301 507 24.703 T 22-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RMA_RS07115 1b9d3b9dd9d37ea0d87900f50351ce8a 511 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 197 203 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RMA_RS07115 1b9d3b9dd9d37ea0d87900f50351ce8a 511 Pfam PF02390 Putative methyltransferase 335 498 1.3E-49 T 22-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RMA_RS07115 1b9d3b9dd9d37ea0d87900f50351ce8a 511 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 328 502 8.2E-37 T 22-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RMA_RS07115 1b9d3b9dd9d37ea0d87900f50351ce8a 511 SUPERFAMILY SSF53335 324 500 5.28E-22 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS07115 1b9d3b9dd9d37ea0d87900f50351ce8a 511 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 5 293 40.353 T 22-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RMA_RS03385 fef249c734a0061d376beee0007059f1 653 SUPERFAMILY SSF52540 4 636 2.79E-166 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03385 fef249c734a0061d376beee0007059f1 653 TIGRFAM TIGR01073 pcrA: ATP-dependent DNA helicase PcrA 6 643 2.3E-292 T 22-04-2016 IPR005751 ATP-dependent DNA helicase PcrA GO:0004003|GO:0005737|GO:0006268 RMA_RS03385 fef249c734a0061d376beee0007059f1 653 Gene3D G3DSA:3.40.50.300 547 637 7.1E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03385 fef249c734a0061d376beee0007059f1 653 Gene3D G3DSA:3.40.50.300 288 390 7.1E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03385 fef249c734a0061d376beee0007059f1 653 PANTHER PTHR11070:SF7 1 648 4.4E-193 T 22-04-2016 RMA_RS03385 fef249c734a0061d376beee0007059f1 653 PANTHER PTHR11070 1 648 4.4E-193 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RMA_RS03385 fef249c734a0061d376beee0007059f1 653 Gene3D G3DSA:3.40.50.300 4 108 6.5E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03385 fef249c734a0061d376beee0007059f1 653 Gene3D G3DSA:3.40.50.300 193 287 6.5E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03385 fef249c734a0061d376beee0007059f1 653 Pfam PF13361 UvrD-like helicase C-terminal domain 279 613 1.4E-67 T 22-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RMA_RS03385 fef249c734a0061d376beee0007059f1 653 Gene3D G3DSA:1.10.10.160 116 192 2.0E-18 T 22-04-2016 IPR013986 DExx box DNA helicase domain RMA_RS03385 fef249c734a0061d376beee0007059f1 653 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 273 2.1E-75 T 22-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RMA_RS03385 fef249c734a0061d376beee0007059f1 653 Gene3D G3DSA:1.10.486.10 391 535 3.0E-41 T 22-04-2016 RMA_RS02510 5b89f4df015a393de33339b96be93f27 107 PANTHER PTHR36924 8 107 1.3E-35 T 22-04-2016 RMA_RS02510 5b89f4df015a393de33339b96be93f27 107 Pfam PF01381 Helix-turn-helix 22 76 2.7E-9 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RMA_RS02510 5b89f4df015a393de33339b96be93f27 107 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 12 90 2.3E-30 T 22-04-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 RMA_RS02510 5b89f4df015a393de33339b96be93f27 107 Gene3D G3DSA:1.10.260.40 3 94 5.0E-33 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RMA_RS02510 5b89f4df015a393de33339b96be93f27 107 PANTHER PTHR36924:SF1 8 107 1.3E-35 T 22-04-2016 RMA_RS02510 5b89f4df015a393de33339b96be93f27 107 SUPERFAMILY SSF47413 17 91 2.79E-25 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RMA_RS02510 5b89f4df015a393de33339b96be93f27 107 SMART SM00530 21 76 1.6E-7 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RMA_RS06665 9f437d12d51d5c1bdd46b2fae1e49899 323 PANTHER PTHR11693 1 323 1.4E-88 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RMA_RS06665 9f437d12d51d5c1bdd46b2fae1e49899 323 SUPERFAMILY SSF52943 3 202 4.71E-75 T 22-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain RMA_RS06665 9f437d12d51d5c1bdd46b2fae1e49899 323 SUPERFAMILY SSF52943 240 323 4.71E-75 T 22-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain RMA_RS06665 9f437d12d51d5c1bdd46b2fae1e49899 323 Pfam PF00231 ATP synthase 3 322 2.1E-73 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RMA_RS06665 9f437d12d51d5c1bdd46b2fae1e49899 323 PRINTS PR00126 ATP synthase gamma subunit signature 301 322 3.0E-27 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RMA_RS06665 9f437d12d51d5c1bdd46b2fae1e49899 323 PRINTS PR00126 ATP synthase gamma subunit signature 270 289 3.0E-27 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RMA_RS06665 9f437d12d51d5c1bdd46b2fae1e49899 323 PRINTS PR00126 ATP synthase gamma subunit signature 170 187 3.0E-27 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RMA_RS06665 9f437d12d51d5c1bdd46b2fae1e49899 323 PRINTS PR00126 ATP synthase gamma subunit signature 77 96 3.0E-27 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RMA_RS06665 9f437d12d51d5c1bdd46b2fae1e49899 323 Gene3D G3DSA:1.10.287.80 3 36 1.6E-46 T 22-04-2016 RMA_RS06665 9f437d12d51d5c1bdd46b2fae1e49899 323 Gene3D G3DSA:1.10.287.80 257 323 1.6E-46 T 22-04-2016 RMA_RS06665 9f437d12d51d5c1bdd46b2fae1e49899 323 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 323 29.24 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RMA_RS06665 9f437d12d51d5c1bdd46b2fae1e49899 323 Gene3D G3DSA:3.40.1380.10 70 195 1.2E-33 T 22-04-2016 RMA_RS06665 9f437d12d51d5c1bdd46b2fae1e49899 323 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 323 1.4E-80 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RMA_RS06665 9f437d12d51d5c1bdd46b2fae1e49899 323 TIGRFAM TIGR03774 RPE2: rickettsial palindromic element RPE2 domain 208 242 2.5E-22 T 22-04-2016 IPR022436 Rickettsia palindromic element RPE2 RMA_RS01955 1ebc74c33c1055d66b3b3afbc667aacf 398 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 274 375 7.7E-44 T 22-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 RMA_RS01955 1ebc74c33c1055d66b3b3afbc667aacf 398 Gene3D G3DSA:1.20.810.10 15 392 4.4E-179 T 22-04-2016 IPR027387 Cytochrome b/b6-like domain RMA_RS01955 1ebc74c33c1055d66b3b3afbc667aacf 398 Pfam PF00033 Cytochrome b/b6/petB 32 218 2.4E-80 T 22-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RMA_RS01955 1ebc74c33c1055d66b3b3afbc667aacf 398 PANTHER PTHR19271:SF5 11 393 9.9E-238 T 22-04-2016 RMA_RS01955 1ebc74c33c1055d66b3b3afbc667aacf 398 SUPERFAMILY SSF81342 15 276 6.12E-113 T 22-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RMA_RS01955 1ebc74c33c1055d66b3b3afbc667aacf 398 PANTHER PTHR19271 11 393 9.9E-238 T 22-04-2016 RMA_RS01955 1ebc74c33c1055d66b3b3afbc667aacf 398 SUPERFAMILY SSF81648 277 394 2.4E-44 T 22-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 RMA_RS01955 1ebc74c33c1055d66b3b3afbc667aacf 398 PIRSF PIRSF038885 6 398 1.5E-202 T 22-04-2016 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 RMA_RS04390 42c3a16b3ad9289bbd5082cdea4a63f4 427 PIRSF PIRSF006060 1 426 1.3E-74 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RMA_RS04390 42c3a16b3ad9289bbd5082cdea4a63f4 427 Pfam PF13520 Amino acid permease 5 397 3.4E-50 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RMA_RS04390 42c3a16b3ad9289bbd5082cdea4a63f4 427 PANTHER PTHR11785 1 418 1.7E-71 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RMA_RS04390 42c3a16b3ad9289bbd5082cdea4a63f4 427 PANTHER PTHR11785:SF259 1 418 1.7E-71 T 22-04-2016 RMA_RS05445 d189a8adfb06265b20c5d8158ea25e29 351 PANTHER PTHR21716 1 337 1.2E-68 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like RMA_RS05445 d189a8adfb06265b20c5d8158ea25e29 351 Pfam PF01594 Domain of unknown function DUF20 5 336 1.1E-55 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like RMA_RS06060 b56dc155623f5ab9b1f26925dfd61618 361 Pfam PF01702 Queuine tRNA-ribosyltransferase 130 354 8.8E-79 T 22-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RMA_RS06060 b56dc155623f5ab9b1f26925dfd61618 361 Gene3D G3DSA:3.20.20.105 3 355 3.6E-151 T 22-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RMA_RS06060 b56dc155623f5ab9b1f26925dfd61618 361 PANTHER PTHR21148:SF26 1 352 7.6E-154 T 22-04-2016 RMA_RS06060 b56dc155623f5ab9b1f26925dfd61618 361 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 6 356 2.6E-150 T 22-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RMA_RS06060 b56dc155623f5ab9b1f26925dfd61618 361 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 6 358 4.0E-145 T 22-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RMA_RS06060 b56dc155623f5ab9b1f26925dfd61618 361 PANTHER PTHR21148 1 352 7.6E-154 T 22-04-2016 RMA_RS06060 b56dc155623f5ab9b1f26925dfd61618 361 SUPERFAMILY SSF51713 3 355 4.05E-148 T 22-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RMA_RS06060 b56dc155623f5ab9b1f26925dfd61618 361 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 4 361 56.597 T 22-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RMA_RS03425 e45480c45aa62335d08b28c4853c4bc9 192 PANTHER PTHR33231 1 186 5.1E-27 T 22-04-2016 RMA_RS03425 e45480c45aa62335d08b28c4853c4bc9 192 SUPERFAMILY SSF69754 1 106 2.75E-26 T 22-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RMA_RS03425 e45480c45aa62335d08b28c4853c4bc9 192 Gene3D G3DSA:3.30.160.100 1 99 1.9E-22 T 22-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RMA_RS03425 e45480c45aa62335d08b28c4853c4bc9 192 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 96 6.5E-18 T 22-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RMA_RS03425 e45480c45aa62335d08b28c4853c4bc9 192 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 103 4.0E-31 T 22-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RMA_RS03425 e45480c45aa62335d08b28c4853c4bc9 192 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 134 186 5.4E-15 T 22-04-2016 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal RMA_RS03165 8a6611344034cdd147f2d8a5ede6d7c0 270 PANTHER PTHR31689 4 270 3.3E-77 T 22-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS03165 8a6611344034cdd147f2d8a5ede6d7c0 270 SUPERFAMILY SSF54506 147 265 1.1E-31 T 22-04-2016 RMA_RS03165 8a6611344034cdd147f2d8a5ede6d7c0 270 Gene3D G3DSA:3.10.310.10 121 255 4.3E-29 T 22-04-2016 RMA_RS03165 8a6611344034cdd147f2d8a5ede6d7c0 270 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 5 268 30.896 T 22-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS03165 8a6611344034cdd147f2d8a5ede6d7c0 270 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 5 267 7.0E-84 T 22-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS03165 8a6611344034cdd147f2d8a5ede6d7c0 270 Gene3D G3DSA:3.10.310.10 5 120 8.6E-34 T 22-04-2016 RMA_RS03165 8a6611344034cdd147f2d8a5ede6d7c0 270 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 22-04-2016 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS03165 8a6611344034cdd147f2d8a5ede6d7c0 270 Pfam PF01678 Diaminopimelate epimerase 7 123 1.4E-18 T 22-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS03165 8a6611344034cdd147f2d8a5ede6d7c0 270 Pfam PF01678 Diaminopimelate epimerase 150 260 1.8E-13 T 22-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS03165 8a6611344034cdd147f2d8a5ede6d7c0 270 SUPERFAMILY SSF54506 5 129 2.98E-30 T 22-04-2016 RMA_RS03285 0b730a5039f808e7f78544c77dbdd812 678 Pfam PF00326 Prolyl oligopeptidase family 428 640 2.0E-47 T 22-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RMA_RS03285 0b730a5039f808e7f78544c77dbdd812 678 SUPERFAMILY SSF53474 377 640 3.3E-68 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS03285 0b730a5039f808e7f78544c77dbdd812 678 Gene3D G3DSA:2.130.10.10 348 374 8.3E-26 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RMA_RS03285 0b730a5039f808e7f78544c77dbdd812 678 Gene3D G3DSA:2.130.10.10 31 313 8.3E-26 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RMA_RS03285 0b730a5039f808e7f78544c77dbdd812 678 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 495 515 9.4E-6 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RMA_RS03285 0b730a5039f808e7f78544c77dbdd812 678 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 437 461 9.4E-6 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RMA_RS03285 0b730a5039f808e7f78544c77dbdd812 678 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 573 595 9.4E-6 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RMA_RS03285 0b730a5039f808e7f78544c77dbdd812 678 PANTHER PTHR11731 276 651 2.4E-127 T 22-04-2016 RMA_RS03285 0b730a5039f808e7f78544c77dbdd812 678 PANTHER PTHR11731 26 131 2.4E-127 T 22-04-2016 RMA_RS03285 0b730a5039f808e7f78544c77dbdd812 678 Gene3D G3DSA:3.40.50.1820 376 640 3.9E-70 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS03285 0b730a5039f808e7f78544c77dbdd812 678 PANTHER PTHR11731:SF140 276 651 2.4E-127 T 22-04-2016 RMA_RS03285 0b730a5039f808e7f78544c77dbdd812 678 PANTHER PTHR11731:SF140 26 131 2.4E-127 T 22-04-2016 RMA_RS03285 0b730a5039f808e7f78544c77dbdd812 678 SUPERFAMILY SSF82171 320 373 5.1E-16 T 22-04-2016 RMA_RS03285 0b730a5039f808e7f78544c77dbdd812 678 SUPERFAMILY SSF82171 45 272 5.1E-16 T 22-04-2016 RMA_RS05070 4c1835699f133ca139a45c72f420be56 176 Pfam PF01144 Coenzyme A transferase 6 165 2.2E-30 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RMA_RS05070 4c1835699f133ca139a45c72f420be56 176 SUPERFAMILY SSF100950 2 175 2.89E-54 T 22-04-2016 RMA_RS05070 4c1835699f133ca139a45c72f420be56 176 Gene3D G3DSA:3.40.810.20 2 174 1.6E-71 T 22-04-2016 RMA_RS05070 4c1835699f133ca139a45c72f420be56 176 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 1 174 3.6E-78 T 22-04-2016 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 RMA_RS05070 4c1835699f133ca139a45c72f420be56 176 SMART SM00882 1 167 1.3E-39 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RMA_RS05070 4c1835699f133ca139a45c72f420be56 176 PANTHER PTHR13707 1 174 3.6E-100 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 SUPERFAMILY SSF55874 3 212 2.23E-65 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 Pfam PF00183 Hsp90 protein 215 619 1.6E-110 T 22-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 SMART SM00387 26 182 1.8E-8 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 26 153 3.2E-14 T 22-04-2016 RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 Gene3D G3DSA:3.30.565.10 4 229 1.9E-80 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 Hamap MF_00505 Chaperone protein HtpG [htpG]. 1 617 29.411 T 22-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 PANTHER PTHR11528 4 620 6.6E-258 T 22-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 PRINTS PR00775 90kDa heat shock protein signature 25 47 1.31E-59 T 22-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 PRINTS PR00775 90kDa heat shock protein signature 92 109 1.31E-59 T 22-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 PRINTS PR00775 90kDa heat shock protein signature 4 24 1.31E-59 T 22-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 PRINTS PR00775 90kDa heat shock protein signature 119 141 1.31E-59 T 22-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 PRINTS PR00775 90kDa heat shock protein signature 188 206 1.31E-59 T 22-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 PRINTS PR00775 90kDa heat shock protein signature 74 91 1.31E-59 T 22-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 PRINTS PR00775 90kDa heat shock protein signature 170 187 1.31E-59 T 22-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 24 33 - T 22-04-2016 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 SUPERFAMILY SSF110942 503 616 9.42E-29 T 22-04-2016 RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 SUPERFAMILY SSF54211 222 473 5.61E-84 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 PANTHER PTHR11528:SF44 4 620 6.6E-258 T 22-04-2016 RMA_RS07050 27a1b47b3ccc8427b7cb6be29f8fbfec 621 PIRSF PIRSF002583 1 620 9.9E-212 T 22-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RMA_RS00670 2e08cddbb105738ae34b943da1b10273 309 Gene3D G3DSA:1.10.8.10 5 57 1.7E-27 T 22-04-2016 RMA_RS00670 2e08cddbb105738ae34b943da1b10273 309 ProSitePatterns PS01127 Elongation factor Ts signature 2. 77 87 - T 22-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 RMA_RS00670 2e08cddbb105738ae34b943da1b10273 309 Hamap MF_00050 Elongation factor Ts [tsf]. 1 307 71.718 T 22-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RMA_RS00670 2e08cddbb105738ae34b943da1b10273 309 Gene3D G3DSA:3.30.479.20 152 199 1.8E-19 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RMA_RS00670 2e08cddbb105738ae34b943da1b10273 309 Gene3D G3DSA:3.30.479.20 248 289 1.8E-19 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RMA_RS00670 2e08cddbb105738ae34b943da1b10273 309 SUPERFAMILY SSF46934 5 58 3.21E-19 T 22-04-2016 IPR009060 UBA-like GO:0005515 RMA_RS00670 2e08cddbb105738ae34b943da1b10273 309 Gene3D G3DSA:1.10.286.20 206 247 5.1E-19 T 22-04-2016 RMA_RS00670 2e08cddbb105738ae34b943da1b10273 309 Gene3D G3DSA:3.30.479.20 59 150 6.9E-18 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RMA_RS00670 2e08cddbb105738ae34b943da1b10273 309 SUPERFAMILY SSF54713 150 307 3.92E-43 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RMA_RS00670 2e08cddbb105738ae34b943da1b10273 309 Pfam PF00889 Elongation factor TS 73 290 5.7E-66 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RMA_RS00670 2e08cddbb105738ae34b943da1b10273 309 SUPERFAMILY SSF54713 58 146 5.49E-21 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RMA_RS00670 2e08cddbb105738ae34b943da1b10273 309 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 5 307 1.4E-90 T 22-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RMA_RS00670 2e08cddbb105738ae34b943da1b10273 309 PANTHER PTHR11741 1 309 8.8E-127 T 22-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RMA_RS00670 2e08cddbb105738ae34b943da1b10273 309 ProSitePatterns PS01126 Elongation factor Ts signature 1. 14 29 - T 22-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 RMA_RS00170 98d951ce6d11f12799c99fa27a8e2c48 157 Pfam PF02326 Plant ATP synthase F0 2 77 1.9E-11 T 22-04-2016 IPR003319 ATP synthase YMF19-like, N-terminal RMA_RS06135 76aef6cb932a61bb44e15608d067b2b4 314 Gene3D G3DSA:3.40.366.10 2 125 7.9E-59 T 22-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RMA_RS06135 76aef6cb932a61bb44e15608d067b2b4 314 Gene3D G3DSA:3.40.366.10 199 307 7.9E-59 T 22-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RMA_RS06135 76aef6cb932a61bb44e15608d067b2b4 314 SUPERFAMILY SSF55048 131 199 2.75E-13 T 22-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 RMA_RS06135 76aef6cb932a61bb44e15608d067b2b4 314 SUPERFAMILY SSF52151 3 125 2.62E-65 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RMA_RS06135 76aef6cb932a61bb44e15608d067b2b4 314 SUPERFAMILY SSF52151 192 310 2.62E-65 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RMA_RS06135 76aef6cb932a61bb44e15608d067b2b4 314 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 1 291 1.2E-82 T 22-04-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 RMA_RS06135 76aef6cb932a61bb44e15608d067b2b4 314 PIRSF PIRSF000446 1 313 5.5E-86 T 22-04-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388|UniPathway: UPA00094 RMA_RS06135 76aef6cb932a61bb44e15608d067b2b4 314 PANTHER PTHR10982 1 312 2.4E-110 T 22-04-2016 RMA_RS06135 76aef6cb932a61bb44e15608d067b2b4 314 Gene3D G3DSA:3.30.70.250 128 198 2.5E-20 T 22-04-2016 RMA_RS06135 76aef6cb932a61bb44e15608d067b2b4 314 Pfam PF00698 Acyl transferase domain 5 288 2.6E-30 T 22-04-2016 IPR014043 Acyl transferase RMA_RS06135 76aef6cb932a61bb44e15608d067b2b4 314 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 302 2.0E-16 T 22-04-2016 IPR020801 Polyketide synthase, acyl transferase domain RMA_RS06115 9b1c1b2fe44370a6a7aa2c1d34c35d2d 229 Gene3D G3DSA:3.30.420.10 3 178 1.6E-64 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS06115 9b1c1b2fe44370a6a7aa2c1d34c35d2d 229 PANTHER PTHR30231 1 227 7.9E-86 T 22-04-2016 RMA_RS06115 9b1c1b2fe44370a6a7aa2c1d34c35d2d 229 PANTHER PTHR30231:SF0 1 227 7.9E-86 T 22-04-2016 RMA_RS06115 9b1c1b2fe44370a6a7aa2c1d34c35d2d 229 SMART SM00479 5 178 9.6E-52 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RMA_RS06115 9b1c1b2fe44370a6a7aa2c1d34c35d2d 229 SUPERFAMILY SSF53098 3 176 8.29E-53 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS06115 9b1c1b2fe44370a6a7aa2c1d34c35d2d 229 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 6 218 1.8E-61 T 22-04-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS06115 9b1c1b2fe44370a6a7aa2c1d34c35d2d 229 Pfam PF00929 Exonuclease 7 169 5.3E-42 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RMA_RS06115 9b1c1b2fe44370a6a7aa2c1d34c35d2d 229 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 5 227 9.3E-102 T 22-04-2016 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS05205 0b601f3d0331f9963c832801629177fb 44 PANTHER PTHR14503 1 44 5.1E-20 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05205 0b601f3d0331f9963c832801629177fb 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 39 1.0E-14 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05205 0b601f3d0331f9963c832801629177fb 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.78 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05205 0b601f3d0331f9963c832801629177fb 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 1.3E-24 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05205 0b601f3d0331f9963c832801629177fb 44 Pfam PF00468 Ribosomal protein L34 1 44 3.0E-23 T 22-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05205 0b601f3d0331f9963c832801629177fb 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 22-04-2016 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05775 7a81144e3eb45d8b50b3aaf996ed6c11 478 Gene3D G3DSA:3.90.1200.10 266 332 1.1E-9 T 22-04-2016 RMA_RS05775 7a81144e3eb45d8b50b3aaf996ed6c11 478 PANTHER PTHR10566:SF79 2 115 3.2E-141 T 22-04-2016 RMA_RS05775 7a81144e3eb45d8b50b3aaf996ed6c11 478 PANTHER PTHR10566:SF79 138 460 3.2E-141 T 22-04-2016 RMA_RS05775 7a81144e3eb45d8b50b3aaf996ed6c11 478 PANTHER PTHR10566 2 115 3.2E-141 T 22-04-2016 RMA_RS05775 7a81144e3eb45d8b50b3aaf996ed6c11 478 PANTHER PTHR10566 138 460 3.2E-141 T 22-04-2016 RMA_RS05775 7a81144e3eb45d8b50b3aaf996ed6c11 478 SUPERFAMILY SSF56112 214 452 6.26E-33 T 22-04-2016 IPR011009 Protein kinase-like domain RMA_RS05775 7a81144e3eb45d8b50b3aaf996ed6c11 478 SUPERFAMILY SSF56112 148 180 6.26E-33 T 22-04-2016 IPR011009 Protein kinase-like domain RMA_RS05775 7a81144e3eb45d8b50b3aaf996ed6c11 478 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 5 462 2.9E-188 T 22-04-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 RMA_RS05775 7a81144e3eb45d8b50b3aaf996ed6c11 478 Pfam PF03109 ABC1 family 144 252 6.5E-35 T 22-04-2016 IPR004147 UbiB domain RMA_RS01595 02d70966b24921a9500e2986946ebf3f 86 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 4 84 4.4E-7 T 22-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family RMA_RS01595 02d70966b24921a9500e2986946ebf3f 86 PANTHER PTHR38039:SF1 2 86 2.1E-13 T 22-04-2016 RMA_RS01595 02d70966b24921a9500e2986946ebf3f 86 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 22 85 4.6E-10 T 22-04-2016 IPR009614 Toxin YoeB GO:0004519|GO:0006401 RMA_RS01595 02d70966b24921a9500e2986946ebf3f 86 PANTHER PTHR38039 2 86 2.1E-13 T 22-04-2016 RMA_RS01595 02d70966b24921a9500e2986946ebf3f 86 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 6 85 1.2E-31 T 22-04-2016 IPR009614 Toxin YoeB GO:0004519|GO:0006401 RMA_RS01595 02d70966b24921a9500e2986946ebf3f 86 SUPERFAMILY SSF143011 2 80 1.7E-17 T 22-04-2016 RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 Gene3D G3DSA:4.10.860.10 617 657 1.4E-15 T 22-04-2016 IPR001943 UVR domain GO:0005515 RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 Pfam PF04851 Type III restriction enzyme, res subunit 12 137 1.3E-10 T 22-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 4 653 0.0 T 22-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 SMART SM00487 8 420 9.2E-25 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 SUPERFAMILY SSF46600 617 656 7.45E-11 T 22-04-2016 IPR001943 UVR domain GO:0005515 RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 Gene3D G3DSA:3.40.50.300 419 579 2.4E-37 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 656 42.944 T 22-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 Gene3D G3DSA:3.40.50.300 277 337 1.3E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 Gene3D G3DSA:3.40.50.300 7 88 1.3E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 Gene3D G3DSA:3.40.50.300 387 408 1.3E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 Pfam PF12344 Ultra-violet resistance protein B 551 592 4.2E-20 T 22-04-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 Pfam PF00271 Helicase conserved C-terminal domain 431 544 2.7E-18 T 22-04-2016 IPR001650 Helicase, C-terminal RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 PANTHER PTHR24029 1 660 0.0 T 22-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 SUPERFAMILY SSF52540 458 570 2.05E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 SUPERFAMILY SSF52540 32 81 2.05E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 Gene3D G3DSA:3.30.2060.10 158 238 7.6E-14 T 22-04-2016 RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 SUPERFAMILY SSF52540 1 414 1.08E-133 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 Pfam PF02151 UvrB/uvrC motif 624 655 2.5E-9 T 22-04-2016 IPR001943 UVR domain GO:0005515 RMA_RS01445 847d2563383c3ad9dabbb89d6d25291c 661 SMART SM00490 459 545 2.0E-18 T 22-04-2016 IPR001650 Helicase, C-terminal RMA_RS03815 808d1ac6c9c0670c56be07ce5abf0472 382 PANTHER PTHR30629 4 378 1.4E-55 T 22-04-2016 RMA_RS03815 808d1ac6c9c0670c56be07ce5abf0472 382 Gene3D G3DSA:1.10.443.10 201 370 3.2E-39 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RMA_RS03815 808d1ac6c9c0670c56be07ce5abf0472 382 Gene3D G3DSA:1.10.150.130 101 197 2.4E-15 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal RMA_RS03815 808d1ac6c9c0670c56be07ce5abf0472 382 SUPERFAMILY SSF56349 100 371 1.21E-64 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RMA_RS03815 808d1ac6c9c0670c56be07ce5abf0472 382 Pfam PF13356 Domain of unknown function (DUF4102) 15 94 3.1E-11 T 22-04-2016 IPR025166 Domain of unknown function DUF4102 RMA_RS03815 808d1ac6c9c0670c56be07ce5abf0472 382 PANTHER PTHR30629:SF2 4 378 1.4E-55 T 22-04-2016 RMA_RS03815 808d1ac6c9c0670c56be07ce5abf0472 382 Pfam PF00589 Phage integrase family 202 362 3.4E-26 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 Gene3D G3DSA:3.30.65.10 600 634 6.7E-9 T 22-04-2016 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 Hamap MF_00952 DNA topoisomerase 1 [topA]. 1 686 56.091 T 22-04-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 SUPERFAMILY SSF56712 1 570 6.02E-190 T 22-04-2016 IPR023405 DNA topoisomerase, type IA, core domain RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 SUPERFAMILY SSF56712 598 605 6.02E-190 T 22-04-2016 IPR023405 DNA topoisomerase, type IA, core domain RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 SMART SM00493 1 101 4.9E-32 T 22-04-2016 IPR006171 Toprim domain RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 PANTHER PTHR11390:SF27 1 682 0.0 T 22-04-2016 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 3 633 7.5E-277 T 22-04-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 Pfam PF13368 Topoisomerase C-terminal repeat 719 770 2.5E-9 T 22-04-2016 IPR025589 Topoisomerase C-terminal repeat RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 Pfam PF13368 Topoisomerase C-terminal repeat 660 714 8.8E-9 T 22-04-2016 IPR025589 Topoisomerase C-terminal repeat RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 599 633 9.3E-12 T 22-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 SUPERFAMILY SSF57783 598 634 2.38E-7 T 22-04-2016 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 SMART SM00437 249 519 1.2E-132 T 22-04-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 75 88 6.6E-34 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 377 393 6.6E-34 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 482 496 6.6E-34 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 299 308 6.6E-34 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 165 183 6.6E-34 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 Pfam PF01131 DNA topoisomerase 131 556 1.3E-130 T 22-04-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 286 308 - T 22-04-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 Gene3D G3DSA:2.70.20.10 325 458 7.3E-32 T 22-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 Gene3D G3DSA:2.70.20.10 189 319 1.5E-32 T 22-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 Gene3D G3DSA:1.10.460.10 136 188 8.0E-57 T 22-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 Gene3D G3DSA:1.10.460.10 459 570 8.0E-57 T 22-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 Pfam PF01751 Toprim domain 3 116 1.2E-27 T 22-04-2016 IPR006171 Toprim domain RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 PANTHER PTHR11390 1 682 0.0 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 Gene3D G3DSA:3.40.50.140 1 135 1.7E-45 T 22-04-2016 IPR006171 Toprim domain RMA_RS02470 b2cad4217c21a5506189c8a93f51fe2f 776 SMART SM00436 107 195 4.0E-52 T 22-04-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 RMA_RS07125 5f32eae0464274b4022b10f5d90a306e 665 SUPERFAMILY SSF109604 330 475 1.46E-10 T 22-04-2016 RMA_RS07125 5f32eae0464274b4022b10f5d90a306e 665 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 1 665 23.479 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS07125 5f32eae0464274b4022b10f5d90a306e 665 Pfam PF05746 DALR anticodon binding domain 558 655 1.8E-6 T 22-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RMA_RS07125 5f32eae0464274b4022b10f5d90a306e 665 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 3 664 2.7E-167 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS07125 5f32eae0464274b4022b10f5d90a306e 665 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 4 531 2.3E-175 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS07125 5f32eae0464274b4022b10f5d90a306e 665 PANTHER PTHR30075:SF2 3 665 7.5E-222 T 22-04-2016 RMA_RS07125 5f32eae0464274b4022b10f5d90a306e 665 PANTHER PTHR30075 3 665 7.5E-222 T 22-04-2016 RMA_RS07125 5f32eae0464274b4022b10f5d90a306e 665 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 47 59 2.0E-24 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS07125 5f32eae0464274b4022b10f5d90a306e 665 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 5 18 2.0E-24 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS07125 5f32eae0464274b4022b10f5d90a306e 665 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 379 398 2.0E-24 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS07125 5f32eae0464274b4022b10f5d90a306e 665 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 235 250 2.0E-24 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS07125 5f32eae0464274b4022b10f5d90a306e 665 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 307 323 2.0E-24 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS00905 69ca40bc820aa71da5f1649262fa6cf4 101 Pfam PF01909 Nucleotidyltransferase domain 11 94 6.9E-11 T 22-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 RMA_RS00905 69ca40bc820aa71da5f1649262fa6cf4 101 SUPERFAMILY SSF81301 10 97 2.24E-14 T 22-04-2016 RMA_RS00905 69ca40bc820aa71da5f1649262fa6cf4 101 Gene3D G3DSA:3.30.460.10 10 99 8.7E-22 T 22-04-2016 RMA_RS01880 6f11b91d4d274d0e02c080a58f40b7cc 303 SMART SM00363 11 66 2.0E-9 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RMA_RS01880 6f11b91d4d274d0e02c080a58f40b7cc 303 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 136 150 - T 22-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS01880 6f11b91d4d274d0e02c080a58f40b7cc 303 PANTHER PTHR11079 12 302 3.8E-53 T 22-04-2016 RMA_RS01880 6f11b91d4d274d0e02c080a58f40b7cc 303 SUPERFAMILY SSF55120 92 301 1.04E-49 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS01880 6f11b91d4d274d0e02c080a58f40b7cc 303 Gene3D G3DSA:3.10.290.10 11 62 1.9E-7 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RMA_RS01880 6f11b91d4d274d0e02c080a58f40b7cc 303 SUPERFAMILY SSF55174 10 65 8.9E-9 T 22-04-2016 RMA_RS01880 6f11b91d4d274d0e02c080a58f40b7cc 303 Pfam PF00849 RNA pseudouridylate synthase 97 245 7.6E-29 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS01880 6f11b91d4d274d0e02c080a58f40b7cc 303 PANTHER PTHR11079:SF74 12 302 3.8E-53 T 22-04-2016 RMA_RS01880 6f11b91d4d274d0e02c080a58f40b7cc 303 Pfam PF01479 S4 domain 12 57 1.8E-6 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RMA_RS02580 0bd92ced20529a67c1e5386751c678c6 205 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 205 30.037 T 22-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RMA_RS02580 0bd92ced20529a67c1e5386751c678c6 205 SMART SM00363 94 158 2.2E-16 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RMA_RS02580 0bd92ced20529a67c1e5386751c678c6 205 Gene3D G3DSA:1.10.1050.10 3 96 9.0E-35 T 22-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RMA_RS02580 0bd92ced20529a67c1e5386751c678c6 205 PANTHER PTHR11831:SF4 1 205 5.4E-70 T 22-04-2016 RMA_RS02580 0bd92ced20529a67c1e5386751c678c6 205 Gene3D G3DSA:3.10.290.10 97 192 1.6E-24 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RMA_RS02580 0bd92ced20529a67c1e5386751c678c6 205 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 6 93 5.3E-22 T 22-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RMA_RS02580 0bd92ced20529a67c1e5386751c678c6 205 SMART SM01390 3 93 5.7E-35 T 22-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RMA_RS02580 0bd92ced20529a67c1e5386751c678c6 205 SUPERFAMILY SSF55174 4 205 6.41E-56 T 22-04-2016 RMA_RS02580 0bd92ced20529a67c1e5386751c678c6 205 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 205 3.6E-77 T 22-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RMA_RS02580 0bd92ced20529a67c1e5386751c678c6 205 PANTHER PTHR11831 1 205 5.4E-70 T 22-04-2016 IPR022801 Ribosomal protein S4/S9 RMA_RS02580 0bd92ced20529a67c1e5386751c678c6 205 ProSitePatterns PS00632 Ribosomal protein S4 signature. 92 116 - T 22-04-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 RMA_RS02580 0bd92ced20529a67c1e5386751c678c6 205 Pfam PF01479 S4 domain 95 141 8.9E-17 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RMA_RS04815 d2ff210835040c7d3f611338c840a9d5 561 Pfam PF00905 Penicillin binding protein transpeptidase domain 240 522 3.7E-57 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RMA_RS04815 d2ff210835040c7d3f611338c840a9d5 561 Gene3D G3DSA:3.40.710.10 212 547 1.3E-74 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS04815 d2ff210835040c7d3f611338c840a9d5 561 Pfam PF03717 Penicillin-binding Protein dimerisation domain 69 193 2.2E-14 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RMA_RS04815 d2ff210835040c7d3f611338c840a9d5 561 PANTHER PTHR30627:SF1 13 561 4.8E-125 T 22-04-2016 RMA_RS04815 d2ff210835040c7d3f611338c840a9d5 561 SUPERFAMILY SSF56601 212 551 9.86E-76 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS04815 d2ff210835040c7d3f611338c840a9d5 561 PANTHER PTHR30627 13 561 4.8E-125 T 22-04-2016 RMA_RS04815 d2ff210835040c7d3f611338c840a9d5 561 Gene3D G3DSA:3.90.1310.10 137 197 3.8E-13 T 22-04-2016 RMA_RS04815 d2ff210835040c7d3f611338c840a9d5 561 SUPERFAMILY SSF56519 67 197 6.02E-32 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RMA_RS06000 6f48d9b895731861f883192dbda38ec1 1654 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 1213 1654 1.2E-72 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RMA_RS06000 6f48d9b895731861f883192dbda38ec1 1654 Pfam PF03797 Autotransporter beta-domain 1370 1645 2.3E-29 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS06000 6f48d9b895731861f883192dbda38ec1 1654 Gene3D G3DSA:2.40.128.130 1321 1654 3.5E-37 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS06000 6f48d9b895731861f883192dbda38ec1 1654 SMART SM00869 1370 1644 1.2E-34 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS06000 6f48d9b895731861f883192dbda38ec1 1654 SUPERFAMILY SSF103515 1311 1334 3.01E-45 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS06000 6f48d9b895731861f883192dbda38ec1 1654 SUPERFAMILY SSF103515 1366 1654 3.01E-45 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS06000 6f48d9b895731861f883192dbda38ec1 1654 Pfam PF12334 Rickettsia outer membrane protein B 705 926 6.1E-79 T 22-04-2016 IPR022095 Rickettsia outer membrane protein B RMA_RS04005 e1c19cf44007ab5c446f282257576e4b 478 SUPERFAMILY SSF53098 8 475 2.81E-105 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS04005 e1c19cf44007ab5c446f282257576e4b 478 Gene3D G3DSA:1.10.740.10 369 473 1.3E-28 T 22-04-2016 IPR014737 Transposase, Tn5-like, C-terminal RMA_RS04005 e1c19cf44007ab5c446f282257576e4b 478 Pfam PF01609 Transposase DDE domain 183 382 2.5E-11 T 22-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RMA_RS04005 e1c19cf44007ab5c446f282257576e4b 478 PANTHER PTHR37319 3 472 3.4E-32 T 22-04-2016 RMA_RS04005 e1c19cf44007ab5c446f282257576e4b 478 Pfam PF02281 Transposase Tn5 dimerisation domain 382 471 9.7E-10 T 22-04-2016 IPR003201 Transposase Tn5, dimerisation RMA_RS04005 e1c19cf44007ab5c446f282257576e4b 478 PANTHER PTHR37319:SF1 3 472 3.4E-32 T 22-04-2016 RMA_RS04005 e1c19cf44007ab5c446f282257576e4b 478 Gene3D G3DSA:3.90.350.10 68 367 3.5E-79 T 22-04-2016 IPR014736 Transposase, Tn5-like, core RMA_RS04005 e1c19cf44007ab5c446f282257576e4b 478 Pfam PF14706 Transposase DNA-binding 8 64 7.2E-15 T 22-04-2016 IPR014735 Transposase, Tn5-like, N-terminal RMA_RS04005 e1c19cf44007ab5c446f282257576e4b 478 Gene3D G3DSA:1.10.246.40 8 64 2.0E-14 T 22-04-2016 IPR014735 Transposase, Tn5-like, N-terminal RMA_RS03205 18a338b96ef8a3fd7435222099c277bf 203 Gene3D G3DSA:3.30.420.10 17 180 4.1E-24 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS03205 18a338b96ef8a3fd7435222099c277bf 203 SMART SM00474 1 169 3.8E-45 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RMA_RS03205 18a338b96ef8a3fd7435222099c277bf 203 Pfam PF01612 3'-5' exonuclease 19 168 1.8E-42 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RMA_RS03205 18a338b96ef8a3fd7435222099c277bf 203 PANTHER PTHR12124:SF48 17 203 2.7E-63 T 22-04-2016 RMA_RS03205 18a338b96ef8a3fd7435222099c277bf 203 PANTHER PTHR12124 17 203 2.7E-63 T 22-04-2016 RMA_RS03205 18a338b96ef8a3fd7435222099c277bf 203 SUPERFAMILY SSF53098 17 191 1.48E-49 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS03565 917f5e1889854fb59b9d7e0679a13df3 91 SUPERFAMILY SSF47060 3 89 5.89E-34 T 22-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 RMA_RS03565 917f5e1889854fb59b9d7e0679a13df3 91 Gene3D G3DSA:1.10.287.10 3 89 3.6E-36 T 22-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 RMA_RS03565 917f5e1889854fb59b9d7e0679a13df3 91 Pfam PF00312 Ribosomal protein S15 8 88 6.0E-35 T 22-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS03565 917f5e1889854fb59b9d7e0679a13df3 91 PANTHER PTHR23321 1 90 2.1E-37 T 22-04-2016 RMA_RS03565 917f5e1889854fb59b9d7e0679a13df3 91 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 4 89 1.3E-40 T 22-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 RMA_RS03565 917f5e1889854fb59b9d7e0679a13df3 91 SMART SM01387 8 88 1.3E-47 T 22-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS03565 917f5e1889854fb59b9d7e0679a13df3 91 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 22-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS03565 917f5e1889854fb59b9d7e0679a13df3 91 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.829 T 22-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 RMA_RS03565 917f5e1889854fb59b9d7e0679a13df3 91 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 12 88 3.0E-28 T 22-04-2016 RMA_RS01435 3d31954c13424b007a07d81d43d1792b 166 Gene3D G3DSA:1.20.1280.20 110 163 9.9E-5 T 22-04-2016 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 RMA_RS01435 3d31954c13424b007a07d81d43d1792b 166 PANTHER PTHR14021 3 162 7.2E-21 T 22-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 RMA_RS01435 3d31954c13424b007a07d81d43d1792b 166 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 2 166 16.624 T 22-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 RMA_RS01435 3d31954c13424b007a07d81d43d1792b 166 SMART SM00271 2 65 1.7E-9 T 22-04-2016 IPR001623 DnaJ domain RMA_RS01435 3d31954c13424b007a07d81d43d1792b 166 Pfam PF00226 DnaJ domain 3 69 2.1E-9 T 22-04-2016 IPR001623 DnaJ domain RMA_RS01435 3d31954c13424b007a07d81d43d1792b 166 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 14 166 3.8E-48 T 22-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 RMA_RS01435 3d31954c13424b007a07d81d43d1792b 166 SUPERFAMILY SSF47144 96 164 8.37E-10 T 22-04-2016 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 RMA_RS01435 3d31954c13424b007a07d81d43d1792b 166 Gene3D G3DSA:1.10.287.110 2 76 3.0E-20 T 22-04-2016 IPR001623 DnaJ domain RMA_RS01435 3d31954c13424b007a07d81d43d1792b 166 Pfam PF07743 HSCB C-terminal oligomerisation domain 109 158 5.5E-5 T 22-04-2016 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 RMA_RS01435 3d31954c13424b007a07d81d43d1792b 166 SUPERFAMILY SSF46565 3 73 4.71E-16 T 22-04-2016 IPR001623 DnaJ domain RMA_RS01435 3d31954c13424b007a07d81d43d1792b 166 PANTHER PTHR14021:SF15 3 162 7.2E-21 T 22-04-2016 RMA_RS01710 cfece4c022ae33d1572f1d7d65002a44 414 SUPERFAMILY SSF50998 73 374 1.7E-43 T 22-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RMA_RS01710 cfece4c022ae33d1572f1d7d65002a44 414 SMART SM00564 259 290 6.9E-4 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RMA_RS01710 cfece4c022ae33d1572f1d7d65002a44 414 SMART SM00564 296 328 130.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RMA_RS01710 cfece4c022ae33d1572f1d7d65002a44 414 SMART SM00564 75 106 110.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RMA_RS01710 cfece4c022ae33d1572f1d7d65002a44 414 SMART SM00564 160 192 170.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RMA_RS01710 cfece4c022ae33d1572f1d7d65002a44 414 SMART SM00564 206 237 6.2E-5 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RMA_RS01710 cfece4c022ae33d1572f1d7d65002a44 414 SMART SM00564 119 151 82.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RMA_RS01710 cfece4c022ae33d1572f1d7d65002a44 414 Pfam PF13360 PQQ-like domain 90 324 3.6E-29 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RMA_RS01710 cfece4c022ae33d1572f1d7d65002a44 414 Gene3D G3DSA:2.140.10.10 70 240 2.4E-25 T 22-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RMA_RS01710 cfece4c022ae33d1572f1d7d65002a44 414 Gene3D G3DSA:2.140.10.10 254 410 2.7E-10 T 22-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RMA_RS03185 83424780341f2a624a003a085232e6d9 379 Pfam PF02767 DNA polymerase III beta subunit, central domain 130 247 7.6E-26 T 22-04-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS03185 83424780341f2a624a003a085232e6d9 379 SMART SM00480 18 375 1.8E-140 T 22-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS03185 83424780341f2a624a003a085232e6d9 379 SUPERFAMILY SSF55979 126 248 6.51E-23 T 22-04-2016 RMA_RS03185 83424780341f2a624a003a085232e6d9 379 SUPERFAMILY SSF55979 3 117 1.79E-20 T 22-04-2016 RMA_RS03185 83424780341f2a624a003a085232e6d9 379 SUPERFAMILY SSF55979 251 379 3.53E-26 T 22-04-2016 RMA_RS03185 83424780341f2a624a003a085232e6d9 379 Gene3D G3DSA:3.10.150.10 119 249 3.0E-30 T 22-04-2016 RMA_RS03185 83424780341f2a624a003a085232e6d9 379 Gene3D G3DSA:3.10.150.10 3 118 2.7E-18 T 22-04-2016 RMA_RS03185 83424780341f2a624a003a085232e6d9 379 PIRSF PIRSF000804 2 379 3.4E-91 T 22-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS03185 83424780341f2a624a003a085232e6d9 379 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 2 120 4.1E-23 T 22-04-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS03185 83424780341f2a624a003a085232e6d9 379 Gene3D G3DSA:3.10.150.10 252 379 6.9E-37 T 22-04-2016 RMA_RS03185 83424780341f2a624a003a085232e6d9 379 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 2 378 8.9E-79 T 22-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS03185 83424780341f2a624a003a085232e6d9 379 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 251 377 8.8E-23 T 22-04-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS03185 83424780341f2a624a003a085232e6d9 379 PANTHER PTHR30478 3 379 8.9E-89 T 22-04-2016 RMA_RS05710 4acd1aad6dc3683889b65e5bea78eabd 295 Pfam PF13624 SurA N-terminal domain 4 133 9.8E-15 T 22-04-2016 RMA_RS05710 4acd1aad6dc3683889b65e5bea78eabd 295 SUPERFAMILY SSF109998 22 181 5.49E-25 T 22-04-2016 IPR027304 Trigger factor/SurA domain RMA_RS04955 7b26022a6f36a24d72e66de546479ecd 419 PANTHER PTHR21090 1 419 3.8E-167 T 22-04-2016 RMA_RS04955 7b26022a6f36a24d72e66de546479ecd 419 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 418 5.2E-177 T 22-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS04955 7b26022a6f36a24d72e66de546479ecd 419 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 419 43.805 T 22-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS04955 7b26022a6f36a24d72e66de546479ecd 419 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 409 8.8E-92 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RMA_RS04955 7b26022a6f36a24d72e66de546479ecd 419 Gene3D G3DSA:3.65.10.10 224 418 2.5E-50 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RMA_RS04955 7b26022a6f36a24d72e66de546479ecd 419 Gene3D G3DSA:3.65.10.10 21 223 7.5E-59 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RMA_RS04955 7b26022a6f36a24d72e66de546479ecd 419 SUPERFAMILY SSF55205 1 418 6.54E-127 T 22-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RMA_RS01580 cfc76d755aeb5462f25a456384d8bdd7 456 PIRSF PIRSF006446 1 452 6.2E-191 T 22-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 RMA_RS01580 cfc76d755aeb5462f25a456384d8bdd7 456 PANTHER PTHR30365 1 455 1.1E-232 T 22-04-2016 RMA_RS01580 cfc76d755aeb5462f25a456384d8bdd7 456 PANTHER PTHR30365:SF8 1 455 1.1E-232 T 22-04-2016 RMA_RS01580 cfc76d755aeb5462f25a456384d8bdd7 456 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 8 434 1.0E-158 T 22-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 RMA_RS03330 19551bcb2c829e60c3b5ae14b413b468 255 PANTHER PTHR20275 18 249 4.8E-78 T 22-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RMA_RS03330 19551bcb2c829e60c3b5ae14b413b468 255 Pfam PF01513 ATP-NAD kinase 33 181 1.3E-19 T 22-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RMA_RS03330 19551bcb2c829e60c3b5ae14b413b468 255 SUPERFAMILY SSF111331 25 240 8.11E-53 T 22-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain RMA_RS03330 19551bcb2c829e60c3b5ae14b413b468 255 Gene3D G3DSA:3.40.50.10330 22 110 2.0E-17 T 22-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RMA_RS03330 19551bcb2c829e60c3b5ae14b413b468 255 Hamap MF_00361 NAD kinase [nadK]. 4 255 20.954 T 22-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RMA_RS03330 19551bcb2c829e60c3b5ae14b413b468 255 PANTHER PTHR20275:SF7 18 249 4.8E-78 T 22-04-2016 RMA_RS03330 19551bcb2c829e60c3b5ae14b413b468 255 Gene3D G3DSA:2.60.200.30 111 224 2.2E-28 T 22-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RMA_RS00890 6a9f501b2745415c9e1569ceea45cf18 157 SUPERFAMILY SSF53098 1 154 7.84E-42 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS00890 6a9f501b2745415c9e1569ceea45cf18 157 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 148 - T 22-04-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 RMA_RS00890 6a9f501b2745415c9e1569ceea45cf18 157 PANTHER PTHR30194 1 150 9.3E-57 T 22-04-2016 RMA_RS00890 6a9f501b2745415c9e1569ceea45cf18 157 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 3 150 8.0E-34 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RMA_RS00890 6a9f501b2745415c9e1569ceea45cf18 157 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 139 151 4.1E-21 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RMA_RS00890 6a9f501b2745415c9e1569ceea45cf18 157 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 4 17 4.1E-21 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RMA_RS00890 6a9f501b2745415c9e1569ceea45cf18 157 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 4.1E-21 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RMA_RS00890 6a9f501b2745415c9e1569ceea45cf18 157 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 4.1E-21 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RMA_RS00890 6a9f501b2745415c9e1569ceea45cf18 157 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 4.1E-21 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RMA_RS00890 6a9f501b2745415c9e1569ceea45cf18 157 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 1 154 40.355 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RMA_RS00890 6a9f501b2745415c9e1569ceea45cf18 157 Gene3D G3DSA:3.30.420.10 1 155 1.3E-48 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS00890 6a9f501b2745415c9e1569ceea45cf18 157 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 3 150 6.5E-38 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RMA_RS03595 fd0785749a93dd55468fd485dca5421a 275 PANTHER PTHR30213 1 275 2.6E-47 T 22-04-2016 RMA_RS03595 fd0785749a93dd55468fd485dca5421a 275 Pfam PF03631 Virulence factor BrkB 17 270 9.9E-58 T 22-04-2016 IPR017039 Virulence factor BrkB RMA_RS03595 fd0785749a93dd55468fd485dca5421a 275 PIRSF PIRSF035875 1 275 6.9E-73 T 22-04-2016 IPR017039 Virulence factor BrkB RMA_RS03595 fd0785749a93dd55468fd485dca5421a 275 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 16 270 5.7E-29 T 22-04-2016 IPR017039 Virulence factor BrkB RMA_RS03080 bf8dfaa52ad8ee5f80fccb1d3938c815 83 Pfam PF11233 Protein of unknown function (DUF3035) 14 58 5.8E-8 T 22-04-2016 IPR021395 Protein of unknown function DUF3035 RMA_RS01965 4cf49b742386fb2650cf61a2309a10e3 251 Pfam PF02167 Cytochrome C1 family 32 249 1.4E-100 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RMA_RS01965 4cf49b742386fb2650cf61a2309a10e3 251 PRINTS PR00603 Cytochrome C1 signature 50 69 7.2E-64 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RMA_RS01965 4cf49b742386fb2650cf61a2309a10e3 251 PRINTS PR00603 Cytochrome C1 signature 197 216 7.2E-64 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RMA_RS01965 4cf49b742386fb2650cf61a2309a10e3 251 PRINTS PR00603 Cytochrome C1 signature 177 196 7.2E-64 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RMA_RS01965 4cf49b742386fb2650cf61a2309a10e3 251 PRINTS PR00603 Cytochrome C1 signature 30 49 7.2E-64 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RMA_RS01965 4cf49b742386fb2650cf61a2309a10e3 251 PRINTS PR00603 Cytochrome C1 signature 128 152 7.2E-64 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RMA_RS01965 4cf49b742386fb2650cf61a2309a10e3 251 PRINTS PR00603 Cytochrome C1 signature 166 177 7.2E-64 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RMA_RS01965 4cf49b742386fb2650cf61a2309a10e3 251 PRINTS PR00603 Cytochrome C1 signature 95 115 7.2E-64 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RMA_RS01965 4cf49b742386fb2650cf61a2309a10e3 251 PRINTS PR00603 Cytochrome C1 signature 216 231 7.2E-64 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RMA_RS01965 4cf49b742386fb2650cf61a2309a10e3 251 SUPERFAMILY SSF46626 23 215 8.83E-72 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RMA_RS01965 4cf49b742386fb2650cf61a2309a10e3 251 Gene3D G3DSA:1.20.5.100 217 251 1.3E-15 T 22-04-2016 RMA_RS01965 4cf49b742386fb2650cf61a2309a10e3 251 PANTHER PTHR10266 6 251 8.5E-136 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RMA_RS01965 4cf49b742386fb2650cf61a2309a10e3 251 Gene3D G3DSA:1.10.760.10 23 216 1.2E-83 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RMA_RS01965 4cf49b742386fb2650cf61a2309a10e3 251 SUPERFAMILY SSF81496 216 251 1.83E-5 T 22-04-2016 IPR021157 Cytochrome c1, transmembrane anchor, C-terminal RMA_RS01965 4cf49b742386fb2650cf61a2309a10e3 251 PANTHER PTHR10266:SF3 6 251 8.5E-136 T 22-04-2016 RMA_RS02055 b7bcc22ea5ea794041d59c73c01dbb14 111 Gene3D G3DSA:1.25.10.10 8 24 6.8E-4 T 22-04-2016 IPR011989 Armadillo-like helical RMA_RS02055 b7bcc22ea5ea794041d59c73c01dbb14 111 Gene3D G3DSA:1.25.10.10 70 110 6.8E-4 T 22-04-2016 IPR011989 Armadillo-like helical RMA_RS03925 ebe936b9301ca4548616f5c4cb97ebba 347 Pfam PF04754 Putative transposase, YhgA-like 19 216 3.8E-69 T 22-04-2016 IPR006842 Transposase (putative), YhgA-like RMA_RS03925 ebe936b9301ca4548616f5c4cb97ebba 347 PANTHER PTHR34611 292 346 5.3E-51 T 22-04-2016 RMA_RS03925 ebe936b9301ca4548616f5c4cb97ebba 347 PANTHER PTHR34611 12 267 5.3E-51 T 22-04-2016 RMA_RS03925 ebe936b9301ca4548616f5c4cb97ebba 347 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 19 344 5.3E-26 T 22-04-2016 IPR010106 Conserved hypothetical protein CHP01784 RMA_RS03925 ebe936b9301ca4548616f5c4cb97ebba 347 PANTHER PTHR34611:SF3 292 346 5.3E-51 T 22-04-2016 RMA_RS03925 ebe936b9301ca4548616f5c4cb97ebba 347 PANTHER PTHR34611:SF3 12 267 5.3E-51 T 22-04-2016 RMA_RS00745 d08cbdcc603a34095bc257ecb52d1199 82 ProDom PD195745 TRANSMEMBRANE MEMBRANE RC0131 RP098 1 82 1.0E-29 T 22-04-2016 RMA_RS07120 b64b7cb5a705ad80476c22a700279d3d 312 Gene3D G3DSA:3.90.870.10 2 192 3.0E-61 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RMA_RS07120 b64b7cb5a705ad80476c22a700279d3d 312 PIRSF PIRSF004930 1 312 5.9E-100 T 22-04-2016 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 RMA_RS07120 b64b7cb5a705ad80476c22a700279d3d 312 Pfam PF03481 Putative GTP-binding controlling metal-binding 189 310 4.0E-18 T 22-04-2016 IPR005145 Putative GTP-binding controlling metal-binding domain RMA_RS07120 b64b7cb5a705ad80476c22a700279d3d 312 PANTHER PTHR17490:SF3 1 310 1.8E-77 T 22-04-2016 RMA_RS07120 b64b7cb5a705ad80476c22a700279d3d 312 PANTHER PTHR17490 1 310 1.8E-77 T 22-04-2016 RMA_RS07120 b64b7cb5a705ad80476c22a700279d3d 312 SUPERFAMILY SSF55821 2 193 8.85E-54 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RMA_RS07120 b64b7cb5a705ad80476c22a700279d3d 312 Pfam PF01300 Telomere recombination 8 187 6.7E-48 T 22-04-2016 IPR006070 YrdC-like domain GO:0003725 RMA_RS07120 b64b7cb5a705ad80476c22a700279d3d 312 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 2 193 4.7E-51 T 22-04-2016 IPR006070 YrdC-like domain GO:0003725 RMA_RS01060 e9d516324b964ea8f7f8eec0282eef29 159 PANTHER PTHR30466 4 159 3.1E-43 T 22-04-2016 RMA_RS01060 e9d516324b964ea8f7f8eec0282eef29 159 Pfam PF01613 Flavin reductase like domain 14 158 3.8E-38 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RMA_RS01060 e9d516324b964ea8f7f8eec0282eef29 159 Gene3D G3DSA:2.30.110.10 7 159 4.8E-53 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RMA_RS01060 e9d516324b964ea8f7f8eec0282eef29 159 PANTHER PTHR30466:SF1 4 159 3.1E-43 T 22-04-2016 RMA_RS01060 e9d516324b964ea8f7f8eec0282eef29 159 SUPERFAMILY SSF50475 7 157 1.08E-47 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RMA_RS01060 e9d516324b964ea8f7f8eec0282eef29 159 SMART SM00903 14 158 3.6E-47 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 Gene3D G3DSA:1.10.1420.10 282 491 4.4E-48 T 22-04-2016 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 Pfam PF05192 MutS domain III 288 583 1.2E-36 T 22-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 SMART SM00533 302 615 9.2E-104 T 22-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 PANTHER PTHR11361:SF86 16 884 0.0 T 22-04-2016 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 Gene3D G3DSA:3.40.50.300 591 825 5.4E-83 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 Pfam PF05190 MutS family domain IV 451 542 1.6E-22 T 22-04-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 715 731 - T 22-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 Gene3D G3DSA:3.30.420.110 141 271 4.5E-27 T 22-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 SUPERFAMILY SSF48334 286 590 2.88E-74 T 22-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 Gene3D G3DSA:3.40.1170.10 10 134 4.4E-49 T 22-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 Pfam PF01624 MutS domain I 16 133 3.8E-42 T 22-04-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 SMART SM00534 634 821 2.3E-121 T 22-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 Pfam PF05188 MutS domain II 142 272 1.1E-24 T 22-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 15 878 23.058 T 22-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 PIRSF PIRSF037677 9 871 4.0E-172 T 22-04-2016 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 PANTHER PTHR11361 16 884 0.0 T 22-04-2016 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 Pfam PF00488 MutS domain V 637 823 2.3E-84 T 22-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 SUPERFAMILY SSF52540 591 824 4.43E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 SUPERFAMILY SSF53150 131 298 8.5E-32 T 22-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 SUPERFAMILY SSF55271 15 129 1.05E-39 T 22-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 RMA_RS02215 b902fb0ddb7afedc0c8226b5405bbbcf 886 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 16 884 7.3E-259 T 22-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 RMA_RS05605 c4f9da42432d52f43074644d347f6aa0 207 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 204 1.6E-65 T 22-04-2016 IPR013005 50S ribosomal protein uL4 RMA_RS05605 c4f9da42432d52f43074644d347f6aa0 207 PANTHER PTHR10746 5 206 2.2E-83 T 22-04-2016 IPR013005 50S ribosomal protein uL4 RMA_RS05605 c4f9da42432d52f43074644d347f6aa0 207 Pfam PF00573 Ribosomal protein L4/L1 family 16 205 1.0E-56 T 22-04-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 RMA_RS05605 c4f9da42432d52f43074644d347f6aa0 207 Gene3D G3DSA:3.40.1370.10 59 206 1.2E-53 T 22-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 RMA_RS05605 c4f9da42432d52f43074644d347f6aa0 207 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 207 29.528 T 22-04-2016 IPR013005 50S ribosomal protein uL4 RMA_RS05605 c4f9da42432d52f43074644d347f6aa0 207 SUPERFAMILY SSF52166 1 206 4.97E-65 T 22-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 RMA_RS07525 7c86374d11d147003087f8c83b87da78 72 Pfam PF13181 Tetratricopeptide repeat 8 34 0.086 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RMA_RS07525 7c86374d11d147003087f8c83b87da78 72 Pfam PF13181 Tetratricopeptide repeat 41 65 0.0016 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RMA_RS07525 7c86374d11d147003087f8c83b87da78 72 Gene3D G3DSA:1.25.40.10 7 65 3.4E-10 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS07525 7c86374d11d147003087f8c83b87da78 72 SUPERFAMILY SSF48452 7 68 6.42E-10 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 5 307 4.7E-94 T 22-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 Gene3D G3DSA:3.40.50.620 184 233 3.5E-51 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 Gene3D G3DSA:3.40.50.620 5 69 3.5E-51 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 337 379 2.5E-22 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 SUPERFAMILY SSF48163 396 511 5.14E-26 T 22-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 SUPERFAMILY SSF48163 282 367 5.14E-26 T 22-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 Gene3D G3DSA:3.90.800.10 70 183 8.3E-30 T 22-04-2016 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 Gene3D G3DSA:1.10.1160.10 236 317 6.0E-31 T 22-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 Gene3D G3DSA:1.10.10.350 418 511 3.6E-25 T 22-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 PRINTS PR00987 Glutamyl-tRNA synthetase signature 22 33 8.3E-26 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 PRINTS PR00987 Glutamyl-tRNA synthetase signature 182 192 8.3E-26 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 PRINTS PR00987 Glutamyl-tRNA synthetase signature 8 20 8.3E-26 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 PRINTS PR00987 Glutamyl-tRNA synthetase signature 198 206 8.3E-26 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 PRINTS PR00987 Glutamyl-tRNA synthetase signature 37 50 8.3E-26 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 SUPERFAMILY SSF52374 5 299 2.95E-105 T 22-04-2016 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 5 339 2.4E-136 T 22-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 PANTHER PTHR11451 3 337 9.4E-86 T 22-04-2016 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 PANTHER PTHR11451 500 513 9.4E-86 T 22-04-2016 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 PANTHER PTHR11451:SF41 3 337 9.4E-86 T 22-04-2016 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 PANTHER PTHR11451:SF41 500 513 9.4E-86 T 22-04-2016 RMA_RS05365 42287013cb6bdad21f8d8211b1592a4a 513 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 5 513 30.597 T 22-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RMA_RS03155 4e965a1bde452ce4b95a7e2cf1115010 338 Pfam PF13439 Glycosyltransferase Family 4 13 150 2.5E-9 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RMA_RS03155 4e965a1bde452ce4b95a7e2cf1115010 338 PANTHER PTHR12526 13 336 4.8E-54 T 22-04-2016 RMA_RS03155 4e965a1bde452ce4b95a7e2cf1115010 338 Pfam PF00534 Glycosyl transferases group 1 151 314 9.8E-43 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 RMA_RS03155 4e965a1bde452ce4b95a7e2cf1115010 338 SUPERFAMILY SSF53756 7 336 9.16E-69 T 22-04-2016 RMA_RS03155 4e965a1bde452ce4b95a7e2cf1115010 338 Gene3D G3DSA:3.40.50.2000 161 313 1.3E-26 T 22-04-2016 RMA_RS05570 ef5b173e0e96c28427a78c3b778864d4 71 SUPERFAMILY SSF46561 10 67 2.49E-16 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05570 ef5b173e0e96c28427a78c3b778864d4 71 Gene3D G3DSA:1.10.287.310 10 65 4.2E-20 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05570 ef5b173e0e96c28427a78c3b778864d4 71 TIGRFAM TIGR00012 L29: ribosomal protein uL29 13 64 1.6E-16 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05570 ef5b173e0e96c28427a78c3b778864d4 71 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 65 14.689 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05570 ef5b173e0e96c28427a78c3b778864d4 71 Pfam PF00831 Ribosomal L29 protein 10 65 9.1E-18 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05570 ef5b173e0e96c28427a78c3b778864d4 71 PANTHER PTHR10916 15 65 2.5E-14 T 22-04-2016 RMA_RS00805 64d3b507bbd6cc0de074b1d99c05f5c7 805 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 15 801 5.2E-293 T 22-04-2016 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 RMA_RS00805 64d3b507bbd6cc0de074b1d99c05f5c7 805 SMART SM00382 450 708 3.9E-6 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS00805 64d3b507bbd6cc0de074b1d99c05f5c7 805 Gene3D G3DSA:3.40.50.300 565 566 1.9E-14 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00805 64d3b507bbd6cc0de074b1d99c05f5c7 805 Gene3D G3DSA:3.40.50.300 647 712 1.9E-14 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00805 64d3b507bbd6cc0de074b1d99c05f5c7 805 Gene3D G3DSA:3.40.50.300 426 523 1.9E-14 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00805 64d3b507bbd6cc0de074b1d99c05f5c7 805 SUPERFAMILY SSF52540 421 718 3.18E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00805 64d3b507bbd6cc0de074b1d99c05f5c7 805 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 195 399 6.5E-70 T 22-04-2016 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 RMA_RS06195 e4b8ee0f0e9da7cb214f631430510ab6 499 TIGRFAM TIGR00769 AAA: ADP/ATP carrier protein family 20 492 2.0E-123 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RMA_RS06195 e4b8ee0f0e9da7cb214f631430510ab6 499 Pfam PF03219 TLC ATP/ADP transporter 6 495 7.6E-185 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RMA_RS06195 e4b8ee0f0e9da7cb214f631430510ab6 499 PANTHER PTHR31187 11 489 4.4E-96 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RMA_RS01270 69b61ddcafac79f5c80e097644ca7d67 251 Gene3D G3DSA:1.25.40.10 35 103 2.2E-9 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS01270 69b61ddcafac79f5c80e097644ca7d67 251 Gene3D G3DSA:1.25.40.10 172 227 3.5E-6 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS01270 69b61ddcafac79f5c80e097644ca7d67 251 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 6 239 7.4E-78 T 22-04-2016 IPR017689 Outer membrane protein assembly factor BamD RMA_RS01270 69b61ddcafac79f5c80e097644ca7d67 251 PANTHER PTHR37423 5 247 3.6E-53 T 22-04-2016 RMA_RS01270 69b61ddcafac79f5c80e097644ca7d67 251 SUPERFAMILY SSF48452 117 249 1.69E-7 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS01270 69b61ddcafac79f5c80e097644ca7d67 251 Pfam PF13525 Outer membrane lipoprotein 34 225 1.1E-45 T 22-04-2016 RMA_RS01270 69b61ddcafac79f5c80e097644ca7d67 251 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 1 234 42.974 T 22-04-2016 IPR017689 Outer membrane protein assembly factor BamD RMA_RS01270 69b61ddcafac79f5c80e097644ca7d67 251 SUPERFAMILY SSF48452 34 152 3.16E-11 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 PANTHER PTHR24322 11 132 1.6E-47 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 PANTHER PTHR24322 148 180 1.6E-47 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 10 238 6.7E-97 T 22-04-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 6.8E-13 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 6.8E-13 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 6.8E-13 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 1.8E-44 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 1.8E-44 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.8E-44 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 1.8E-44 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 1.8E-44 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.8E-44 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 238 5.5E-60 T 22-04-2016 RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 SUPERFAMILY SSF51735 6 240 1.59E-82 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 Gene3D G3DSA:3.40.50.720 2 240 1.5E-83 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 179 0.0027 T 22-04-2016 RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 PANTHER PTHR24322:SF328 11 132 1.6E-47 T 22-04-2016 RMA_RS06405 d6a9a4480aee1e5f1476a18abd056f80 241 PANTHER PTHR24322:SF328 148 180 1.6E-47 T 22-04-2016 RMA_RS05350 851403daf6b9476162a34d5f4fa4adb4 75 SUPERFAMILY SSF159894 4 70 6.02E-14 T 22-04-2016 RMA_RS05350 851403daf6b9476162a34d5f4fa4adb4 75 Pfam PF04993 TfoX N-terminal domain 12 51 1.5E-8 T 22-04-2016 IPR007076 TfoX, N-terminal RMA_RS05350 851403daf6b9476162a34d5f4fa4adb4 75 Gene3D G3DSA:3.30.1460.30 4 53 1.8E-14 T 22-04-2016 IPR007076 TfoX, N-terminal RMA_RS02135 ba620a19a8e1f97f8f014b83dd3e5f12 59 Pfam PF10913 Protein of unknown function (DUF2706) 1 58 1.7E-40 T 22-04-2016 IPR024444 Protein of unknown function DUF2706 RMA_RS02135 ba620a19a8e1f97f8f014b83dd3e5f12 59 ProDom PD194885 TRANSMEMBRANE MEMBRANE RP288 19 58 5.0E-16 T 22-04-2016 IPR024444 Protein of unknown function DUF2706 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 53 64 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 SUPERFAMILY SSF52374 12 203 1.78E-128 T 22-04-2016 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 SUPERFAMILY SSF52374 405 644 1.78E-128 T 22-04-2016 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 SUPERFAMILY SSF50677 210 405 5.23E-46 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 Hamap MF_02003 Isoleucine--tRNA ligase [ileS]. 8 1086 13.848 T 22-04-2016 IPR023586 Isoleucine-tRNA ligase, type 2 GO:0004822 KEGG: 00970+6.1.1.5 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 PANTHER PTHR11946 1 257 0.0 T 22-04-2016 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 PANTHER PTHR11946 283 797 0.0 T 22-04-2016 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 PANTHER PTHR11946 990 1019 0.0 T 22-04-2016 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 PANTHER PTHR11946 839 960 0.0 T 22-04-2016 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 PANTHER PTHR11946:SF73 1 257 0.0 T 22-04-2016 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 PANTHER PTHR11946:SF73 283 797 0.0 T 22-04-2016 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 PANTHER PTHR11946:SF73 990 1019 0.0 T 22-04-2016 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 PANTHER PTHR11946:SF73 839 960 0.0 T 22-04-2016 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 Gene3D G3DSA:3.90.740.10 237 408 7.5E-55 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 23 647 1.5E-188 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 46 57 4.7E-30 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 403 418 4.7E-30 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 572 581 4.7E-30 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 236 259 4.7E-30 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 532 545 4.7E-30 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 SUPERFAMILY SSF47323 840 948 2.62E-41 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 SUPERFAMILY SSF47323 669 797 2.62E-41 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 Pfam PF08264 Anticodon-binding domain of tRNA 700 886 3.3E-17 T 22-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 Gene3D G3DSA:1.10.730.10 836 881 5.4E-48 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 Gene3D G3DSA:1.10.730.10 661 797 5.4E-48 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 11 902 6.5E-259 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 Gene3D G3DSA:3.40.50.620 10 199 4.0E-146 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS05305 dba14ddfa7bd3a6a57432c355ce9a848 1092 Gene3D G3DSA:3.40.50.620 409 646 4.0E-146 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 SUPERFAMILY SSF53474 464 712 4.27E-41 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 Gene3D G3DSA:2.130.10.120 221 455 8.1E-102 T 22-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 Gene3D G3DSA:2.130.10.120 76 178 8.1E-102 T 22-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 PANTHER PTHR11757:SF3 201 727 1.3E-292 T 22-04-2016 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 PANTHER PTHR11757:SF3 1 166 1.3E-292 T 22-04-2016 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 Pfam PF00326 Prolyl oligopeptidase family 511 726 5.0E-66 T 22-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 PANTHER PTHR11757 201 727 1.3E-292 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 PANTHER PTHR11757 1 166 1.3E-292 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 SUPERFAMILY SSF50993 216 459 1.02E-70 T 22-04-2016 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 SUPERFAMILY SSF50993 1 173 1.02E-70 T 22-04-2016 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 TIGRFAM TIGR03775 RPE3: rickettsial palindromic element RPE3 domain 175 217 3.7E-20 T 22-04-2016 IPR022437 Rickettsia palindromic element RPE3 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 Gene3D G3DSA:3.40.50.1820 470 702 3.2E-32 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 637 652 8.8E-44 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 549 568 8.8E-44 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 521 545 8.8E-44 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 579 599 8.8E-44 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 495 513 8.8E-44 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 655 677 8.8E-44 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RMA_RS02090 e61bac2ba0c588281da087cb74d8c860 729 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 3 451 2.8E-108 T 22-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RMA_RS00200 7ac628a236d84f0ef972535a985b0479 534 PANTHER PTHR10108 356 386 4.3E-23 T 22-04-2016 RMA_RS00200 7ac628a236d84f0ef972535a985b0479 534 PANTHER PTHR10108 10 157 4.3E-23 T 22-04-2016 RMA_RS00200 7ac628a236d84f0ef972535a985b0479 534 Pfam PF13847 Methyltransferase domain 45 152 5.8E-16 T 22-04-2016 IPR025714 Methyltransferase domain RMA_RS00200 7ac628a236d84f0ef972535a985b0479 534 SUPERFAMILY SSF53335 12 182 1.47E-28 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS00200 7ac628a236d84f0ef972535a985b0479 534 Pfam PF10119 Predicted methyltransferase regulatory domain 217 298 1.0E-24 T 22-04-2016 IPR018773 Methyltransferase regulatory domain, predicted RMA_RS00200 7ac628a236d84f0ef972535a985b0479 534 Gene3D G3DSA:3.40.50.150 17 159 9.1E-29 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS00200 7ac628a236d84f0ef972535a985b0479 534 PANTHER PTHR10108:SF730 356 386 4.3E-23 T 22-04-2016 RMA_RS00200 7ac628a236d84f0ef972535a985b0479 534 PANTHER PTHR10108:SF730 10 157 4.3E-23 T 22-04-2016 RMA_RS00870 468f95ee0040d509e082657b07df4fd1 421 SUPERFAMILY SSF140490 325 417 6.41E-35 T 22-04-2016 RMA_RS00870 468f95ee0040d509e082657b07df4fd1 421 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 166 181 - T 22-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RMA_RS00870 468f95ee0040d509e082657b07df4fd1 421 Pfam PF10531 SLBB domain 242 291 4.0E-9 T 22-04-2016 IPR019554 Soluble ligand binding domain RMA_RS00870 468f95ee0040d509e082657b07df4fd1 421 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 332 413 4.6E-29 T 22-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RMA_RS00870 468f95ee0040d509e082657b07df4fd1 421 SUPERFAMILY SSF142984 240 324 7.59E-25 T 22-04-2016 RMA_RS00870 468f95ee0040d509e082657b07df4fd1 421 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 47 218 1.6E-48 T 22-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain RMA_RS00870 468f95ee0040d509e082657b07df4fd1 421 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 342 353 - T 22-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RMA_RS00870 468f95ee0040d509e082657b07df4fd1 421 SUPERFAMILY SSF142019 6 239 7.72E-84 T 22-04-2016 RMA_RS00870 468f95ee0040d509e082657b07df4fd1 421 PANTHER PTHR11780 2 418 2.3E-260 T 22-04-2016 RMA_RS00870 468f95ee0040d509e082657b07df4fd1 421 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 8 415 1.2E-205 T 22-04-2016 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 RMA_RS00870 468f95ee0040d509e082657b07df4fd1 421 SMART SM00928 329 374 2.6E-24 T 22-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RMA_RS05600 d4bd945666701bf5e50802efe26ab329 98 Pfam PF00276 Ribosomal protein L23 8 93 3.1E-28 T 22-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RMA_RS05600 d4bd945666701bf5e50802efe26ab329 98 PANTHER PTHR11620 7 97 1.3E-22 T 22-04-2016 RMA_RS05600 d4bd945666701bf5e50802efe26ab329 98 Gene3D G3DSA:3.30.70.330 5 97 1.7E-32 T 22-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 RMA_RS05600 d4bd945666701bf5e50802efe26ab329 98 SUPERFAMILY SSF54189 5 95 1.01E-29 T 22-04-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05600 d4bd945666701bf5e50802efe26ab329 98 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 96 21.559 T 22-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RMA_RS03625 bca19ffefb9a9bd5310bdb236eb53f2d 231 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 7 184 3.3E-43 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal RMA_RS03625 bca19ffefb9a9bd5310bdb236eb53f2d 231 SMART SM01007 5 185 7.3E-54 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal RMA_RS03625 bca19ffefb9a9bd5310bdb236eb53f2d 231 PANTHER PTHR10672 7 210 1.7E-67 T 22-04-2016 RMA_RS03625 bca19ffefb9a9bd5310bdb236eb53f2d 231 Gene3D G3DSA:3.40.225.10 3 199 3.4E-53 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal RMA_RS03625 bca19ffefb9a9bd5310bdb236eb53f2d 231 SUPERFAMILY SSF53639 3 200 5.1E-55 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal RMA_RS01175 66c08884a71718624ee40780f0104061 1008 SUPERFAMILY SSF82866 290 487 2.22E-45 T 22-04-2016 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 PANTHER PTHR32063 1 1005 0.0 T 22-04-2016 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 SUPERFAMILY SSF82693 136 181 2.88E-18 T 22-04-2016 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 Pfam PF00873 AcrB/AcrD/AcrF family 4 1005 3.8E-277 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 SUPERFAMILY SSF82693 40 134 8.11E-23 T 22-04-2016 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 Gene3D G3DSA:3.30.70.1430 557 646 1.2E-14 T 22-04-2016 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 SUPERFAMILY SSF82714 700 784 6.54E-17 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RMA_RS01175 66c08884a71718624ee40780f0104061 1008 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 2.2E-73 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 PRINTS PR00702 Acriflavin resistance protein family signature 604 618 2.2E-73 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 2.2E-73 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 2.2E-73 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.2E-73 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.2E-73 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 2.2E-73 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 2.2E-73 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 2.2E-73 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 SUPERFAMILY SSF82693 554 646 1.83E-17 T 22-04-2016 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 SUPERFAMILY SSF82714 182 263 9.94E-15 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RMA_RS01175 66c08884a71718624ee40780f0104061 1008 Gene3D G3DSA:1.10.3850.10 271 490 1.8E-54 T 22-04-2016 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 Gene3D G3DSA:1.10.3850.10 792 1007 2.6E-63 T 22-04-2016 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 SUPERFAMILY SSF82693 267 321 2.88E-18 T 22-04-2016 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 Gene3D G3DSA:3.30.2090.10 700 784 9.5E-16 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RMA_RS01175 66c08884a71718624ee40780f0104061 1008 Gene3D G3DSA:3.30.2090.10 182 265 5.9E-17 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RMA_RS01175 66c08884a71718624ee40780f0104061 1008 Gene3D G3DSA:3.30.70.1430 40 140 7.8E-27 T 22-04-2016 RMA_RS01175 66c08884a71718624ee40780f0104061 1008 SUPERFAMILY SSF82866 788 1007 5.36E-47 T 22-04-2016 RMA_RS01885 ef0e9c08a587cad104f66b466cad7c57 393 PANTHER PTHR22935 20 357 4.3E-42 T 22-04-2016 RMA_RS01885 ef0e9c08a587cad104f66b466cad7c57 393 Pfam PF00144 Beta-lactamase 29 370 6.7E-64 T 22-04-2016 IPR001466 Beta-lactamase-related RMA_RS01885 ef0e9c08a587cad104f66b466cad7c57 393 Gene3D G3DSA:3.40.710.10 38 359 1.5E-58 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS01885 ef0e9c08a587cad104f66b466cad7c57 393 SUPERFAMILY SSF56601 23 359 4.85E-59 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS03600 ed2540f293bee58f7b532e60f5397f97 277 Gene3D G3DSA:3.30.590.10 65 272 2.2E-35 T 22-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 RMA_RS03600 ed2540f293bee58f7b532e60f5397f97 277 SUPERFAMILY SSF55931 25 274 1.67E-44 T 22-04-2016 RMA_RS03600 ed2540f293bee58f7b532e60f5397f97 277 PANTHER PTHR20852 25 274 2.1E-18 T 22-04-2016 RMA_RS03600 ed2540f293bee58f7b532e60f5397f97 277 Pfam PF00120 Glutamine synthetase, catalytic domain 67 273 7.1E-27 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RMA_RS03600 ed2540f293bee58f7b532e60f5397f97 277 SMART SM01230 18 230 7.2E-13 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RMA_RS00925 ca90e3c36ea51abe5e4cb0863f0620a2 286 TIGRFAM TIGR01932 hflC: HflC protein 140 283 4.0E-40 T 22-04-2016 IPR010200 HflC GO:0016021|GO:0052547 RMA_RS00925 ca90e3c36ea51abe5e4cb0863f0620a2 286 SMART SM00244 21 183 8.4E-49 T 22-04-2016 IPR001107 Band 7 domain RMA_RS00925 ca90e3c36ea51abe5e4cb0863f0620a2 286 SUPERFAMILY SSF117892 53 190 1.7E-26 T 22-04-2016 IPR001107 Band 7 domain RMA_RS00925 ca90e3c36ea51abe5e4cb0863f0620a2 286 PANTHER PTHR10264:SF80 8 283 6.2E-81 T 22-04-2016 RMA_RS00925 ca90e3c36ea51abe5e4cb0863f0620a2 286 PANTHER PTHR10264 8 283 6.2E-81 T 22-04-2016 IPR001972 Stomatin family GO:0016020 RMA_RS00925 ca90e3c36ea51abe5e4cb0863f0620a2 286 Pfam PF01145 SPFH domain / Band 7 family 25 199 8.8E-29 T 22-04-2016 IPR001107 Band 7 domain RMA_RS00925 ca90e3c36ea51abe5e4cb0863f0620a2 286 PIRSF PIRSF005651 1 286 2.8E-88 T 22-04-2016 IPR010200 HflC GO:0016021|GO:0052547 RMA_RS00485 7edafc7853f3465b870dddf700ba431b 140 PANTHER PTHR11349 1 140 3.1E-54 T 22-04-2016 RMA_RS00485 7edafc7853f3465b870dddf700ba431b 140 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 22-04-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RMA_RS00485 7edafc7853f3465b870dddf700ba431b 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 8.7E-36 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RMA_RS00485 7edafc7853f3465b870dddf700ba431b 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 8.7E-36 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RMA_RS00485 7edafc7853f3465b870dddf700ba431b 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 8.7E-36 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RMA_RS00485 7edafc7853f3465b870dddf700ba431b 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 8.7E-36 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RMA_RS00485 7edafc7853f3465b870dddf700ba431b 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 8.7E-36 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RMA_RS00485 7edafc7853f3465b870dddf700ba431b 140 Gene3D G3DSA:3.30.70.141 1 139 1.2E-52 T 22-04-2016 RMA_RS00485 7edafc7853f3465b870dddf700ba431b 140 Pfam PF00334 Nucleoside diphosphate kinase 4 138 4.4E-51 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RMA_RS00485 7edafc7853f3465b870dddf700ba431b 140 SMART SM00562 3 140 5.9E-80 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RMA_RS00485 7edafc7853f3465b870dddf700ba431b 140 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 33.049 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RMA_RS00485 7edafc7853f3465b870dddf700ba431b 140 SUPERFAMILY SSF54919 1 139 6.29E-52 T 22-04-2016 RMA_RS07080 5a13caaaf9f7dfefc2b4c5d81227a884 70 Pfam PF01381 Helix-turn-helix 18 57 2.5E-5 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RMA_RS07080 5a13caaaf9f7dfefc2b4c5d81227a884 70 SUPERFAMILY SSF47413 18 59 3.33E-5 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RMA_RS07080 5a13caaaf9f7dfefc2b4c5d81227a884 70 Gene3D G3DSA:1.10.260.40 18 57 2.8E-5 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RMA_RS01055 f1fb2dd812dc03242b555643ab61eeab 239 PANTHER PTHR20836 1 236 3.8E-58 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS01055 f1fb2dd812dc03242b555643ab61eeab 239 SUPERFAMILY SSF55347 107 209 5.89E-29 T 22-04-2016 RMA_RS01055 f1fb2dd812dc03242b555643ab61eeab 239 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 238 30.251 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS01055 f1fb2dd812dc03242b555643ab61eeab 239 PIRSF PIRSF000161 1 239 2.7E-81 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS01055 f1fb2dd812dc03242b555643ab61eeab 239 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 108 236 5.2E-39 T 22-04-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS01055 f1fb2dd812dc03242b555643ab61eeab 239 SUPERFAMILY SSF51735 1 106 1.61E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS01055 f1fb2dd812dc03242b555643ab61eeab 239 SUPERFAMILY SSF51735 209 238 1.61E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS01055 f1fb2dd812dc03242b555643ab61eeab 239 Gene3D G3DSA:3.40.50.720 1 139 1.4E-44 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS01055 f1fb2dd812dc03242b555643ab61eeab 239 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 3 105 8.6E-25 T 22-04-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS01055 f1fb2dd812dc03242b555643ab61eeab 239 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 47 236 5.1E-57 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS01055 f1fb2dd812dc03242b555643ab61eeab 239 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 129 146 - T 22-04-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RMA_RS04110 51d8df22646b394ea01a988e2e9f8db4 148 Pfam PF13508 Acetyltransferase (GNAT) domain 50 135 6.7E-10 T 22-04-2016 IPR000182 GNAT domain GO:0008080 RMA_RS04110 51d8df22646b394ea01a988e2e9f8db4 148 SUPERFAMILY SSF55729 1 140 5.24E-20 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase RMA_RS04110 51d8df22646b394ea01a988e2e9f8db4 148 PANTHER PTHR23091 1 106 7.4E-12 T 22-04-2016 RMA_RS04110 51d8df22646b394ea01a988e2e9f8db4 148 Gene3D G3DSA:3.40.630.30 2 139 1.2E-24 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase RMA_RS06960 cdf666c3e229c2d6de04375620c11e03 188 PANTHER PTHR11079 15 160 6.1E-41 T 22-04-2016 RMA_RS06960 cdf666c3e229c2d6de04375620c11e03 188 SUPERFAMILY SSF53927 12 160 3.18E-46 T 22-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RMA_RS06960 cdf666c3e229c2d6de04375620c11e03 188 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 16 159 45.263 T 22-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 RMA_RS06960 cdf666c3e229c2d6de04375620c11e03 188 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 63 100 - T 22-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RMA_RS06960 cdf666c3e229c2d6de04375620c11e03 188 Gene3D G3DSA:3.40.140.10 11 157 1.4E-49 T 22-04-2016 RMA_RS06960 cdf666c3e229c2d6de04375620c11e03 188 Pfam PF14437 MafB19-like deaminase 15 159 3.2E-31 T 22-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 PANTHER PTHR11540:SF16 2 311 4.6E-155 T 22-04-2016 RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 6 144 1.2E-42 T 22-04-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 SUPERFAMILY SSF56327 145 313 9.66E-53 T 22-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 Gene3D G3DSA:3.40.50.720 2 145 1.2E-52 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 148 313 2.4E-29 T 22-04-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 PANTHER PTHR11540 2 311 4.6E-155 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 PRINTS PR00086 L-lactate dehydrogenase signature 6 30 2.4E-30 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 PRINTS PR00086 L-lactate dehydrogenase signature 30 54 2.4E-30 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 PRINTS PR00086 L-lactate dehydrogenase signature 142 160 2.4E-30 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 PRINTS PR00086 L-lactate dehydrogenase signature 172 185 2.4E-30 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 PRINTS PR00086 L-lactate dehydrogenase signature 118 138 2.4E-30 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 6 312 2.6E-126 T 22-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 Gene3D G3DSA:3.90.110.10 146 314 2.2E-56 T 22-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 SUPERFAMILY SSF51735 6 145 1.17E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 Hamap MF_00487 Malate dehydrogenase [mdh]. 5 314 42.867 T 22-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RMA_RS02845 380b1ad21765affe3513f481da4f47dd 314 PIRSF PIRSF000102 1 314 1.7E-105 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RMA_RS01245 1af670fd945783ce05ac341bd890e8ed 138 SUPERFAMILY SSF55620 1 137 3.06E-37 T 22-04-2016 RMA_RS01245 1af670fd945783ce05ac341bd890e8ed 138 PANTHER PTHR12589 5 137 3.0E-27 T 22-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein RMA_RS01245 1af670fd945783ce05ac341bd890e8ed 138 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 4 137 3.4E-34 T 22-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein RMA_RS01245 1af670fd945783ce05ac341bd890e8ed 138 Gene3D G3DSA:3.30.479.10 1 138 6.6E-35 T 22-04-2016 RMA_RS05495 406ca67bd082bc33abb5fb8efde73530 127 SUPERFAMILY SSF53137 12 127 9.48E-41 T 22-04-2016 RMA_RS05495 406ca67bd082bc33abb5fb8efde73530 127 Gene3D G3DSA:3.30.420.80 5 127 4.8E-44 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RMA_RS05495 406ca67bd082bc33abb5fb8efde73530 127 Pfam PF00411 Ribosomal protein S11 17 126 2.0E-37 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RMA_RS05495 406ca67bd082bc33abb5fb8efde73530 127 ProSitePatterns PS00054 Ribosomal protein S11 signature. 95 117 - T 22-04-2016 IPR018102 Ribosomal S11, conserved site RMA_RS05495 406ca67bd082bc33abb5fb8efde73530 127 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 8 124 5.7E-49 T 22-04-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05495 406ca67bd082bc33abb5fb8efde73530 127 PIRSF PIRSF002131 1 127 1.7E-46 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RMA_RS05495 406ca67bd082bc33abb5fb8efde73530 127 PANTHER PTHR11759 7 127 2.9E-47 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RMA_RS05495 406ca67bd082bc33abb5fb8efde73530 127 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 6 127 27.982 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RMA_RS00855 9827315a96d89344dacd28355bfe8b15 138 PANTHER PTHR15680 2 126 5.9E-41 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00855 9827315a96d89344dacd28355bfe8b15 138 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 1 126 3.2E-48 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00855 9827315a96d89344dacd28355bfe8b15 138 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 127 31.148 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00855 9827315a96d89344dacd28355bfe8b15 138 PRINTS PR00061 Ribosomal protein L19 signature 101 126 6.8E-20 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00855 9827315a96d89344dacd28355bfe8b15 138 PRINTS PR00061 Ribosomal protein L19 signature 8 37 6.8E-20 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00855 9827315a96d89344dacd28355bfe8b15 138 PIRSF PIRSF002191 1 138 3.8E-43 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00855 9827315a96d89344dacd28355bfe8b15 138 SUPERFAMILY SSF50104 1 127 2.31E-38 T 22-04-2016 IPR008991 Translation protein SH3-like domain RMA_RS00855 9827315a96d89344dacd28355bfe8b15 138 Pfam PF01245 Ribosomal protein L19 10 126 5.3E-40 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00855 9827315a96d89344dacd28355bfe8b15 138 ProSitePatterns PS01015 Ribosomal protein L19 signature. 99 114 - T 22-04-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS01285 833125b74daaac156b95f1387a35f446 627 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 624 37.189 T 22-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 RMA_RS01285 833125b74daaac156b95f1387a35f446 627 PANTHER PTHR19375 2 627 0.0 T 22-04-2016 RMA_RS01285 833125b74daaac156b95f1387a35f446 627 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 331 345 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site RMA_RS01285 833125b74daaac156b95f1387a35f446 627 Pfam PF00012 Hsp70 protein 4 598 4.4E-273 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01285 833125b74daaac156b95f1387a35f446 627 Gene3D G3DSA:3.30.420.40 4 52 1.0E-66 T 22-04-2016 RMA_RS01285 833125b74daaac156b95f1387a35f446 627 Gene3D G3DSA:3.30.420.40 118 190 1.0E-66 T 22-04-2016 RMA_RS01285 833125b74daaac156b95f1387a35f446 627 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site RMA_RS01285 833125b74daaac156b95f1387a35f446 627 SUPERFAMILY SSF100920 379 534 4.58E-63 T 22-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RMA_RS01285 833125b74daaac156b95f1387a35f446 627 PANTHER PTHR19375:SF173 2 627 0.0 T 22-04-2016 RMA_RS01285 833125b74daaac156b95f1387a35f446 627 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 598 3.1E-294 T 22-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 RMA_RS01285 833125b74daaac156b95f1387a35f446 627 Gene3D G3DSA:3.90.640.10 224 308 3.0E-29 T 22-04-2016 RMA_RS01285 833125b74daaac156b95f1387a35f446 627 SUPERFAMILY SSF100934 501 598 1.83E-20 T 22-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RMA_RS01285 833125b74daaac156b95f1387a35f446 627 Gene3D G3DSA:2.60.34.10 384 525 4.8E-74 T 22-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RMA_RS01285 833125b74daaac156b95f1387a35f446 627 Gene3D G3DSA:1.20.1270.10 526 597 2.2E-29 T 22-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RMA_RS01285 833125b74daaac156b95f1387a35f446 627 PRINTS PR00301 70kDa heat shock protein signature 196 206 2.3E-79 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01285 833125b74daaac156b95f1387a35f446 627 PRINTS PR00301 70kDa heat shock protein signature 328 344 2.3E-79 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01285 833125b74daaac156b95f1387a35f446 627 PRINTS PR00301 70kDa heat shock protein signature 463 479 2.3E-79 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01285 833125b74daaac156b95f1387a35f446 627 PRINTS PR00301 70kDa heat shock protein signature 137 157 2.3E-79 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01285 833125b74daaac156b95f1387a35f446 627 PRINTS PR00301 70kDa heat shock protein signature 3 16 2.3E-79 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01285 833125b74daaac156b95f1387a35f446 627 PRINTS PR00301 70kDa heat shock protein signature 359 379 2.3E-79 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01285 833125b74daaac156b95f1387a35f446 627 PRINTS PR00301 70kDa heat shock protein signature 53 61 2.3E-79 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01285 833125b74daaac156b95f1387a35f446 627 PRINTS PR00301 70kDa heat shock protein signature 382 401 2.3E-79 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01285 833125b74daaac156b95f1387a35f446 627 PRINTS PR00301 70kDa heat shock protein signature 31 43 2.3E-79 T 22-04-2016 IPR013126 Heat shock protein 70 family RMA_RS01285 833125b74daaac156b95f1387a35f446 627 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 190 203 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site RMA_RS01285 833125b74daaac156b95f1387a35f446 627 SUPERFAMILY SSF53067 186 376 8.03E-68 T 22-04-2016 RMA_RS01285 833125b74daaac156b95f1387a35f446 627 Gene3D G3DSA:3.30.420.40 313 355 8.3E-37 T 22-04-2016 RMA_RS01285 833125b74daaac156b95f1387a35f446 627 Gene3D G3DSA:3.30.420.40 191 223 8.3E-37 T 22-04-2016 RMA_RS01285 833125b74daaac156b95f1387a35f446 627 SUPERFAMILY SSF53067 1 182 2.59E-66 T 22-04-2016 RMA_RS01285 833125b74daaac156b95f1387a35f446 627 Gene3D G3DSA:3.30.30.30 53 105 1.0E-24 T 22-04-2016 RMA_RS03645 39db5a0d3b21647710bdc25d822e4f97 250 PIRSF PIRSF016642 1 250 1.3E-96 T 22-04-2016 IPR015834 Uncharacterised conserved protein UCP016642 RMA_RS03645 39db5a0d3b21647710bdc25d822e4f97 250 PANTHER PTHR12835 2 221 2.5E-53 T 22-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RMA_RS03645 39db5a0d3b21647710bdc25d822e4f97 250 PANTHER PTHR12835:SF7 2 221 2.5E-53 T 22-04-2016 IPR015834 Uncharacterised conserved protein UCP016642 RMA_RS03645 39db5a0d3b21647710bdc25d822e4f97 250 Gene3D G3DSA:3.40.50.880 42 99 7.7E-5 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RMA_RS03645 39db5a0d3b21647710bdc25d822e4f97 250 Pfam PF09825 Biotin-protein ligase, N terminal 1 240 2.5E-74 T 22-04-2016 IPR019197 Biotin-protein ligase, N-terminal RMA_RS03645 39db5a0d3b21647710bdc25d822e4f97 250 SUPERFAMILY SSF52317 27 207 4.58E-13 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RMA_RS05285 2f4c3a977d245cdc84a2dde31bfe9311 66 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 3 58 7.8E-22 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RMA_RS05285 2f4c3a977d245cdc84a2dde31bfe9311 66 Pfam PF01165 Ribosomal protein S21 4 56 6.8E-16 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RMA_RS05285 2f4c3a977d245cdc84a2dde31bfe9311 66 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 56 14.861 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RMA_RS05285 2f4c3a977d245cdc84a2dde31bfe9311 66 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 41 1.0E-8 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RMA_RS05195 e47e2bc1cbbcddb1a6de00efae4fbc33 68 SUPERFAMILY SSF143034 2 62 8.5E-19 T 22-04-2016 RMA_RS05195 e47e2bc1cbbcddb1a6de00efae4fbc33 68 PANTHER PTHR33343 1 65 1.8E-19 T 22-04-2016 RMA_RS05195 e47e2bc1cbbcddb1a6de00efae4fbc33 68 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 16.339 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RMA_RS05195 e47e2bc1cbbcddb1a6de00efae4fbc33 68 Pfam PF01632 Ribosomal protein L35 2 60 7.1E-20 T 22-04-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05195 e47e2bc1cbbcddb1a6de00efae4fbc33 68 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 65 5.0E-24 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RMA_RS05195 e47e2bc1cbbcddb1a6de00efae4fbc33 68 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.7E-11 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RMA_RS05195 e47e2bc1cbbcddb1a6de00efae4fbc33 68 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.7E-11 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RMA_RS05195 e47e2bc1cbbcddb1a6de00efae4fbc33 68 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.7E-11 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RMA_RS05195 e47e2bc1cbbcddb1a6de00efae4fbc33 68 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 22-04-2016 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS04525 155fd721d2f98d0d43b1174e2cd1e8c1 191 SUPERFAMILY SSF52507 6 188 1.7E-60 T 22-04-2016 IPR003382 Flavoprotein GO:0003824 RMA_RS04525 155fd721d2f98d0d43b1174e2cd1e8c1 191 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 5 188 36.541 T 22-04-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 RMA_RS04525 155fd721d2f98d0d43b1174e2cd1e8c1 191 Gene3D G3DSA:3.40.50.1950 6 188 6.3E-77 T 22-04-2016 IPR003382 Flavoprotein GO:0003824 RMA_RS04525 155fd721d2f98d0d43b1174e2cd1e8c1 191 PANTHER PTHR30108 1 191 4.6E-82 T 22-04-2016 RMA_RS04525 155fd721d2f98d0d43b1174e2cd1e8c1 191 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 6 186 1.6E-76 T 22-04-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 RMA_RS04525 155fd721d2f98d0d43b1174e2cd1e8c1 191 Pfam PF02441 Flavoprotein 6 129 3.7E-28 T 22-04-2016 IPR003382 Flavoprotein GO:0003824 RMA_RS04525 155fd721d2f98d0d43b1174e2cd1e8c1 191 PANTHER PTHR30108:SF2 1 191 4.6E-82 T 22-04-2016 RMA_RS03120 22f6c68c51077d7dc875d422730033c6 195 PRINTS PR00702 Acriflavin resistance protein family signature 105 128 4.9E-25 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS03120 22f6c68c51077d7dc875d422730033c6 195 PRINTS PR00702 Acriflavin resistance protein family signature 27 51 4.9E-25 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS03120 22f6c68c51077d7dc875d422730033c6 195 PRINTS PR00702 Acriflavin resistance protein family signature 80 103 4.9E-25 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS03120 22f6c68c51077d7dc875d422730033c6 195 PANTHER PTHR32063:SF21 155 195 1.5E-73 T 22-04-2016 RMA_RS03120 22f6c68c51077d7dc875d422730033c6 195 SUPERFAMILY SSF82866 2 133 2.09E-29 T 22-04-2016 RMA_RS03120 22f6c68c51077d7dc875d422730033c6 195 Pfam PF00873 AcrB/AcrD/AcrF family 2 194 5.1E-51 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS03120 22f6c68c51077d7dc875d422730033c6 195 PANTHER PTHR32063 2 138 1.5E-73 T 22-04-2016 RMA_RS03120 22f6c68c51077d7dc875d422730033c6 195 PANTHER PTHR32063 155 195 1.5E-73 T 22-04-2016 RMA_RS03120 22f6c68c51077d7dc875d422730033c6 195 Gene3D G3DSA:1.20.1640.10 2 141 3.0E-37 T 22-04-2016 RMA_RS03120 22f6c68c51077d7dc875d422730033c6 195 PANTHER PTHR32063:SF21 2 138 1.5E-73 T 22-04-2016 RMA_RS06400 61998946df2cd281f68272bec8e91294 343 PANTHER PTHR22942:SF1 6 336 1.4E-200 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RMA_RS06400 61998946df2cd281f68272bec8e91294 343 PRINTS PR00142 RecA protein signature 298 315 2.0E-85 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RMA_RS06400 61998946df2cd281f68272bec8e91294 343 PRINTS PR00142 RecA protein signature 211 239 2.0E-85 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RMA_RS06400 61998946df2cd281f68272bec8e91294 343 PRINTS PR00142 RecA protein signature 128 157 2.0E-85 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RMA_RS06400 61998946df2cd281f68272bec8e91294 343 PRINTS PR00142 RecA protein signature 94 123 2.0E-85 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RMA_RS06400 61998946df2cd281f68272bec8e91294 343 PRINTS PR00142 RecA protein signature 244 273 2.0E-85 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RMA_RS06400 61998946df2cd281f68272bec8e91294 343 PRINTS PR00142 RecA protein signature 166 195 2.0E-85 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RMA_RS06400 61998946df2cd281f68272bec8e91294 343 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 5 325 1.9E-171 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RMA_RS06400 61998946df2cd281f68272bec8e91294 343 Hamap MF_00268 Protein RecA [recA]. 6 330 51.511 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RMA_RS06400 61998946df2cd281f68272bec8e91294 343 SUPERFAMILY SSF52540 6 268 3.44E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06400 61998946df2cd281f68272bec8e91294 343 Pfam PF00154 recA bacterial DNA recombination protein 8 269 1.8E-145 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RMA_RS06400 61998946df2cd281f68272bec8e91294 343 Gene3D G3DSA:3.40.50.300 29 268 8.8E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06400 61998946df2cd281f68272bec8e91294 343 ProSitePatterns PS00321 recA signature. 214 222 - T 22-04-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 RMA_RS06400 61998946df2cd281f68272bec8e91294 343 Gene3D G3DSA:3.30.250.10 269 326 4.9E-29 T 22-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal RMA_RS06400 61998946df2cd281f68272bec8e91294 343 SUPERFAMILY SSF54752 269 326 2.49E-22 T 22-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal RMA_RS06400 61998946df2cd281f68272bec8e91294 343 PANTHER PTHR22942 6 336 1.4E-200 T 22-04-2016 RMA_RS06400 61998946df2cd281f68272bec8e91294 343 SMART SM00382 58 229 6.3E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS00735 279ebfafae838915f5d83a5c4c2df29a 259 Pfam PF02405 Permease MlaE 44 254 4.3E-78 T 22-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 RMA_RS00735 279ebfafae838915f5d83a5c4c2df29a 259 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 6 258 2.5E-75 T 22-04-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria RMA_RS00735 279ebfafae838915f5d83a5c4c2df29a 259 PANTHER PTHR30188:SF4 1 259 1.5E-94 T 22-04-2016 RMA_RS00735 279ebfafae838915f5d83a5c4c2df29a 259 PANTHER PTHR30188 1 259 1.5E-94 T 22-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 RMA_RS01775 a582ce93608487a1245f7042e58b9d1e 107 Pfam PF11020 Domain of unknown function (DUF2610) 4 83 1.9E-36 T 22-04-2016 IPR021277 Protein of unknown function DUF2610 RMA_RS00895 00e8345308d0e113af7bf939861c4c61 230 SUPERFAMILY SSF75217 2 174 9.16E-31 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases RMA_RS00895 00e8345308d0e113af7bf939861c4c61 230 PANTHER PTHR12029:SF54 5 176 1.6E-25 T 22-04-2016 RMA_RS00895 00e8345308d0e113af7bf939861c4c61 230 Pfam PF00588 SpoU rRNA Methylase family 4 149 8.1E-30 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RMA_RS00895 00e8345308d0e113af7bf939861c4c61 230 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 4 229 2.2E-51 T 22-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RMA_RS00895 00e8345308d0e113af7bf939861c4c61 230 PIRSF PIRSF004808 1 230 2.8E-75 T 22-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RMA_RS00895 00e8345308d0e113af7bf939861c4c61 230 PANTHER PTHR12029 5 176 1.6E-25 T 22-04-2016 RMA_RS00895 00e8345308d0e113af7bf939861c4c61 230 Gene3D G3DSA:3.40.1280.10 2 163 5.7E-29 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RMA_RS01935 75d1b18d9ef6842a85fae7ca9db54a60 357 PANTHER PTHR33932 27 195 2.5E-37 T 22-04-2016 RMA_RS01935 75d1b18d9ef6842a85fae7ca9db54a60 357 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 223 346 2.1E-24 T 22-04-2016 IPR007182 Na+/H+ antiporter MnhB subunit-related protein RMA_RS01935 75d1b18d9ef6842a85fae7ca9db54a60 357 PANTHER PTHR33932:SF1 27 195 2.5E-37 T 22-04-2016 RMA_RS01935 75d1b18d9ef6842a85fae7ca9db54a60 357 Pfam PF13244 Domain of unknown function (DUF4040) 30 94 5.3E-18 T 22-04-2016 IPR025383 Domain of unknown function DUF4040 RMA_RS03045 4a6e5d931e427131cc47296585ebb12d 242 PANTHER PTHR11922 88 239 1.4E-49 T 22-04-2016 RMA_RS03045 4a6e5d931e427131cc47296585ebb12d 242 PANTHER PTHR11922 32 72 1.4E-49 T 22-04-2016 RMA_RS03045 4a6e5d931e427131cc47296585ebb12d 242 SUPERFAMILY SSF52317 27 240 2.13E-44 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RMA_RS03045 4a6e5d931e427131cc47296585ebb12d 242 PANTHER PTHR11922:SF18 88 239 1.4E-49 T 22-04-2016 RMA_RS03045 4a6e5d931e427131cc47296585ebb12d 242 PANTHER PTHR11922:SF18 32 72 1.4E-49 T 22-04-2016 RMA_RS03045 4a6e5d931e427131cc47296585ebb12d 242 Gene3D G3DSA:3.40.50.880 3 240 1.5E-68 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RMA_RS03045 4a6e5d931e427131cc47296585ebb12d 242 Pfam PF07722 Peptidase C26 5 222 5.4E-72 T 22-04-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 RMA_RS04050 c5f9856ab749d6bb51e9b21646fe9d62 219 Pfam PF02224 Cytidylate kinase 17 215 7.2E-69 T 22-04-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RMA_RS04050 c5f9856ab749d6bb51e9b21646fe9d62 219 TIGRFAM TIGR00017 cmk: cytidylate kinase 14 212 2.0E-51 T 22-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RMA_RS04050 c5f9856ab749d6bb51e9b21646fe9d62 219 PANTHER PTHR21299:SF2 17 217 1.2E-32 T 22-04-2016 RMA_RS04050 c5f9856ab749d6bb51e9b21646fe9d62 219 PANTHER PTHR21299 17 217 1.2E-32 T 22-04-2016 RMA_RS04050 c5f9856ab749d6bb51e9b21646fe9d62 219 SUPERFAMILY SSF52540 15 217 1.12E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04050 c5f9856ab749d6bb51e9b21646fe9d62 219 Gene3D G3DSA:3.40.50.300 14 215 8.1E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04050 c5f9856ab749d6bb51e9b21646fe9d62 219 Hamap MF_00238 Cytidylate kinase [cmk]. 15 218 27.897 T 22-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RMA_RS04120 ef0c449dbbece5b7a6a440e4b9bf94e5 61 PANTHER PTHR30547 1 61 2.4E-19 T 22-04-2016 RMA_RS04120 ef0c449dbbece5b7a6a440e4b9bf94e5 61 PANTHER PTHR30547:SF0 1 61 2.4E-19 T 22-04-2016 RMA_RS04120 ef0c449dbbece5b7a6a440e4b9bf94e5 61 Pfam PF06250 Protein of unknown function (DUF1016) 2 61 3.1E-15 T 22-04-2016 IPR009362 Protein of unknown function DUF1016 RMA_RS04410 8727ffcf6c45eec789a6c3704b832767 131 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 126 8.1E-72 T 22-04-2016 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 RMA_RS04410 8727ffcf6c45eec789a6c3704b832767 131 PANTHER PTHR10093 1 130 5.4E-92 T 22-04-2016 RMA_RS04410 8727ffcf6c45eec789a6c3704b832767 131 Pfam PF01592 NifU-like N terminal domain 2 126 1.8E-57 T 22-04-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 RMA_RS04410 8727ffcf6c45eec789a6c3704b832767 131 SUPERFAMILY SSF82649 1 125 3.14E-49 T 22-04-2016 RMA_RS04410 8727ffcf6c45eec789a6c3704b832767 131 Gene3D G3DSA:3.90.1010.10 2 128 3.1E-57 T 22-04-2016 RMA_RS01635 297e722382e33f69c158cf16cd161d18 79 Pfam PF13612 Transposase DDE domain 1 79 7.5E-27 T 22-04-2016 IPR025668 Transposase DDE domain RMA_RS06760 297e722382e33f69c158cf16cd161d18 79 Pfam PF13612 Transposase DDE domain 1 79 7.5E-27 T 22-04-2016 IPR025668 Transposase DDE domain RMA_RS03125 297e722382e33f69c158cf16cd161d18 79 Pfam PF13612 Transposase DDE domain 1 79 7.5E-27 T 22-04-2016 IPR025668 Transposase DDE domain RMA_RS05255 297e722382e33f69c158cf16cd161d18 79 Pfam PF13612 Transposase DDE domain 1 79 7.5E-27 T 22-04-2016 IPR025668 Transposase DDE domain RMA_RS06350 dc42c9e969144c1c2c889bb5887012c8 105 SUPERFAMILY SSF102829 4 78 1.02E-15 T 22-04-2016 IPR007838 Cell division protein ZapA-like RMA_RS06350 dc42c9e969144c1c2c889bb5887012c8 105 Pfam PF05164 Cell division protein ZapA 4 84 1.3E-15 T 22-04-2016 IPR007838 Cell division protein ZapA-like RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 67 123 2.3E-20 T 22-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 PANTHER PTHR22773 1 554 6.8E-231 T 22-04-2016 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 PANTHER PTHR22773 570 604 6.8E-231 T 22-04-2016 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 Pfam PF00361 Proton-conducting membrane transporter 135 427 6.5E-82 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 231 252 1.2E-60 T 22-04-2016 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 253 279 1.2E-60 T 22-04-2016 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 321 333 1.2E-60 T 22-04-2016 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 112 132 1.2E-60 T 22-04-2016 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 84 109 1.2E-60 T 22-04-2016 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 159 180 1.2E-60 T 22-04-2016 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 421 440 1.2E-60 T 22-04-2016 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 6 650 3.3E-245 T 22-04-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 PANTHER PTHR22773:SF50 1 554 6.8E-231 T 22-04-2016 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 PANTHER PTHR22773:SF50 570 604 6.8E-231 T 22-04-2016 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 504 525 1.5E-13 T 22-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 271 293 1.5E-13 T 22-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 420 442 1.5E-13 T 22-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RMA_RS06610 dbea351dc0bf8b612799cdc5b774acfb 657 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 86 106 1.5E-13 T 22-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RMA_RS01530 65ef43525d47e6b486ea65a0f60d0384 350 Pfam PF03969 AFG1-like ATPase 11 343 3.3E-83 T 22-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 RMA_RS01530 65ef43525d47e6b486ea65a0f60d0384 350 Gene3D G3DSA:3.40.50.300 21 169 1.7E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01530 65ef43525d47e6b486ea65a0f60d0384 350 SUPERFAMILY SSF52540 39 168 6.75E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01530 65ef43525d47e6b486ea65a0f60d0384 350 PANTHER PTHR12169 46 343 1.4E-88 T 22-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 RMA_RS05290 03b3f7a8e1a221e8a0af91e49096f583 203 PANTHER PTHR21427 76 182 1.0E-11 T 22-04-2016 RMA_RS05290 03b3f7a8e1a221e8a0af91e49096f583 203 Pfam PF08511 COQ9 116 182 4.1E-22 T 22-04-2016 IPR013718 COQ9 UniPathway: UPA00232 RMA_RS05290 03b3f7a8e1a221e8a0af91e49096f583 203 TIGRFAM TIGR02396 diverge_rpsU: rpsU-divergently transcribed protein 11 189 8.1E-62 T 22-04-2016 IPR012762 Ubiquinone biosynthesis protein COQ9 GO:0006744 UniPathway: UPA00232 RMA_RS05165 313378bd12bc09ff5d422a6a991e7ff5 56 SUPERFAMILY SSF55729 1 56 2.02E-10 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase RMA_RS05165 313378bd12bc09ff5d422a6a991e7ff5 56 Gene3D G3DSA:3.40.630.30 1 56 3.9E-12 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase RMA_RS00645 3ecdddf8842f4966e2dfd13e47adcd9d 100 Pfam PF03840 Preprotein translocase SecG subunit 4 71 2.8E-16 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RMA_RS00645 3ecdddf8842f4966e2dfd13e47adcd9d 100 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 1.1E-13 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RMA_RS00645 3ecdddf8842f4966e2dfd13e47adcd9d 100 PRINTS PR01651 Protein-export SecG membrane protein signature 53 75 1.1E-13 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RMA_RS00645 3ecdddf8842f4966e2dfd13e47adcd9d 100 PRINTS PR01651 Protein-export SecG membrane protein signature 37 53 1.1E-13 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RMA_RS00645 3ecdddf8842f4966e2dfd13e47adcd9d 100 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 4 73 6.0E-19 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RMA_RS04870 562fce9e6fa3cccdef9edeb452b4d07e 126 PANTHER PTHR34070 3 126 1.0E-22 T 22-04-2016 RMA_RS04870 562fce9e6fa3cccdef9edeb452b4d07e 126 Pfam PF08713 DNA alkylation repair enzyme 4 126 3.0E-36 T 22-04-2016 IPR014825 DNA alkylation repair enzyme RMA_RS04870 562fce9e6fa3cccdef9edeb452b4d07e 126 SUPERFAMILY SSF48371 4 126 1.84E-22 T 22-04-2016 IPR016024 Armadillo-type fold GO:0005488 RMA_RS04870 562fce9e6fa3cccdef9edeb452b4d07e 126 PANTHER PTHR34070:SF1 3 126 1.0E-22 T 22-04-2016 RMA_RS04870 562fce9e6fa3cccdef9edeb452b4d07e 126 Gene3D G3DSA:1.25.40.290 70 126 3.1E-10 T 22-04-2016 RMA_RS00655 f9aeb05bc7d537cd43ddb44791213bfe 1789 SUPERFAMILY SSF103515 1513 1787 2.22E-30 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS00655 f9aeb05bc7d537cd43ddb44791213bfe 1789 Pfam PF03797 Autotransporter beta-domain 1514 1772 1.3E-37 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS00655 f9aeb05bc7d537cd43ddb44791213bfe 1789 Gene3D G3DSA:2.40.128.130 1514 1787 2.0E-24 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS00655 f9aeb05bc7d537cd43ddb44791213bfe 1789 SMART SM00869 1514 1779 3.3E-20 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS04520 efa4355e4d45fe5f349570dbb4d59bca 648 PANTHER PTHR30580 1 648 1.6E-190 T 22-04-2016 RMA_RS04520 efa4355e4d45fe5f349570dbb4d59bca 648 Hamap MF_00983 Probable primosomal protein N' [priA]. 6 647 24.065 T 22-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RMA_RS04520 efa4355e4d45fe5f349570dbb4d59bca 648 SMART SM00490 415 512 1.0E-6 T 22-04-2016 IPR001650 Helicase, C-terminal RMA_RS04520 efa4355e4d45fe5f349570dbb4d59bca 648 SMART SM00487 118 312 2.0E-24 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RMA_RS04520 efa4355e4d45fe5f349570dbb4d59bca 648 Gene3D G3DSA:3.40.50.300 122 300 4.4E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04520 efa4355e4d45fe5f349570dbb4d59bca 648 SUPERFAMILY SSF52540 429 534 6.83E-28 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04520 efa4355e4d45fe5f349570dbb4d59bca 648 SUPERFAMILY SSF52540 137 188 6.83E-28 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04520 efa4355e4d45fe5f349570dbb4d59bca 648 Pfam PF00271 Helicase conserved C-terminal domain 405 511 9.6E-6 T 22-04-2016 IPR001650 Helicase, C-terminal RMA_RS04520 efa4355e4d45fe5f349570dbb4d59bca 648 Pfam PF00270 DEAD/DEAH box helicase 126 285 6.5E-16 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RMA_RS04520 efa4355e4d45fe5f349570dbb4d59bca 648 TIGRFAM TIGR00595 priA: primosomal protein N' 141 644 2.9E-178 T 22-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RMA_RS04520 efa4355e4d45fe5f349570dbb4d59bca 648 SUPERFAMILY SSF52540 64 295 2.83E-38 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04520 efa4355e4d45fe5f349570dbb4d59bca 648 Gene3D G3DSA:3.40.50.300 381 556 4.3E-26 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03490 dee1c9824ba11fa956d73f657e9c5f8f 607 PANTHER PTHR11573 24 607 4.3E-227 T 22-04-2016 RMA_RS03490 dee1c9824ba11fa956d73f657e9c5f8f 607 Pfam PF02867 Ribonucleotide reductase, barrel domain 418 563 2.4E-36 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RMA_RS03490 dee1c9824ba11fa956d73f657e9c5f8f 607 Pfam PF02867 Ribonucleotide reductase, barrel domain 89 408 2.5E-75 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RMA_RS03490 dee1c9824ba11fa956d73f657e9c5f8f 607 PRINTS PR01183 Ribonucleotide reductase large chain signature 162 181 7.3E-19 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RMA_RS03490 dee1c9824ba11fa956d73f657e9c5f8f 607 PRINTS PR01183 Ribonucleotide reductase large chain signature 353 375 7.3E-19 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RMA_RS03490 dee1c9824ba11fa956d73f657e9c5f8f 607 PRINTS PR01183 Ribonucleotide reductase large chain signature 381 404 7.3E-19 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RMA_RS03490 dee1c9824ba11fa956d73f657e9c5f8f 607 PRINTS PR01183 Ribonucleotide reductase large chain signature 274 285 7.3E-19 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RMA_RS03490 dee1c9824ba11fa956d73f657e9c5f8f 607 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 21 85 2.5E-13 T 22-04-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 RMA_RS03490 dee1c9824ba11fa956d73f657e9c5f8f 607 Gene3D G3DSA:3.20.70.20 523 566 4.2E-64 T 22-04-2016 RMA_RS03490 dee1c9824ba11fa956d73f657e9c5f8f 607 Gene3D G3DSA:3.20.70.20 8 462 4.2E-64 T 22-04-2016 RMA_RS03490 dee1c9824ba11fa956d73f657e9c5f8f 607 SUPERFAMILY SSF51998 497 568 8.24E-136 T 22-04-2016 RMA_RS03490 dee1c9824ba11fa956d73f657e9c5f8f 607 SUPERFAMILY SSF51998 87 466 8.24E-136 T 22-04-2016 RMA_RS03490 dee1c9824ba11fa956d73f657e9c5f8f 607 SUPERFAMILY SSF48168 12 84 1.1E-12 T 22-04-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 RMA_RS05575 21b827221b0e7fc807a0e11c7462d7e7 136 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 22-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05575 21b827221b0e7fc807a0e11c7462d7e7 136 PANTHER PTHR12220 1 134 1.1E-59 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RMA_RS05575 21b827221b0e7fc807a0e11c7462d7e7 136 SUPERFAMILY SSF54686 1 134 9.55E-50 T 22-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RMA_RS05575 21b827221b0e7fc807a0e11c7462d7e7 136 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 1.8E-42 T 22-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RMA_RS05575 21b827221b0e7fc807a0e11c7462d7e7 136 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 35.744 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RMA_RS05575 21b827221b0e7fc807a0e11c7462d7e7 136 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 2.6E-53 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RMA_RS05575 21b827221b0e7fc807a0e11c7462d7e7 136 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 22-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05575 21b827221b0e7fc807a0e11c7462d7e7 136 Gene3D G3DSA:3.90.1170.10 23 134 1.7E-46 T 22-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RMA_RS05575 21b827221b0e7fc807a0e11c7462d7e7 136 PRINTS PR00060 Ribosomal protein L16 signature 42 53 3.2E-35 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RMA_RS05575 21b827221b0e7fc807a0e11c7462d7e7 136 PRINTS PR00060 Ribosomal protein L16 signature 58 87 3.2E-35 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RMA_RS05575 21b827221b0e7fc807a0e11c7462d7e7 136 PRINTS PR00060 Ribosomal protein L16 signature 24 36 3.2E-35 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RMA_RS05575 21b827221b0e7fc807a0e11c7462d7e7 136 PRINTS PR00060 Ribosomal protein L16 signature 88 117 3.2E-35 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RMA_RS02770 18f95b93b53ebae35dc7a73250627222 70 Pfam PF12796 Ankyrin repeats (3 copies) 3 53 1.2E-7 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain RMA_RS02770 18f95b93b53ebae35dc7a73250627222 70 Gene3D G3DSA:1.25.40.20 3 65 1.1E-13 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain RMA_RS02770 18f95b93b53ebae35dc7a73250627222 70 SUPERFAMILY SSF48403 3 65 5.44E-14 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain RMA_RS01920 51f1e4d5343a69dbf02222cc60a03f9b 184 Pfam PF03938 Outer membrane protein (OmpH-like) 19 170 5.3E-22 T 22-04-2016 IPR005632 Chaperone protein Skp GO:0051082 RMA_RS01920 51f1e4d5343a69dbf02222cc60a03f9b 184 SMART SM00935 11 174 8.9E-31 T 22-04-2016 IPR005632 Chaperone protein Skp GO:0051082 RMA_RS01920 51f1e4d5343a69dbf02222cc60a03f9b 184 PANTHER PTHR35089 30 180 2.7E-15 T 22-04-2016 RMA_RS01920 51f1e4d5343a69dbf02222cc60a03f9b 184 SUPERFAMILY SSF111384 33 174 5.36E-26 T 22-04-2016 IPR024930 Skp domain RMA_RS01920 51f1e4d5343a69dbf02222cc60a03f9b 184 Gene3D G3DSA:3.30.910.20 33 170 3.7E-11 T 22-04-2016 RMA_RS01425 e5735163ab37caeaf4f10a866eb1cac6 112 PANTHER PTHR23426 4 110 3.0E-58 T 22-04-2016 RMA_RS01425 e5735163ab37caeaf4f10a866eb1cac6 112 Gene3D G3DSA:3.10.20.30 3 104 2.0E-43 T 22-04-2016 IPR012675 Beta-grasp domain RMA_RS01425 e5735163ab37caeaf4f10a866eb1cac6 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 93 1.1E-13 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RMA_RS01425 e5735163ab37caeaf4f10a866eb1cac6 112 PANTHER PTHR23426:SF25 4 110 3.0E-58 T 22-04-2016 RMA_RS01425 e5735163ab37caeaf4f10a866eb1cac6 112 PRINTS PR00355 Adrenodoxin signature 61 75 9.7E-11 T 22-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 RMA_RS01425 e5735163ab37caeaf4f10a866eb1cac6 112 PRINTS PR00355 Adrenodoxin signature 42 52 9.7E-11 T 22-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 RMA_RS01425 e5735163ab37caeaf4f10a866eb1cac6 112 PRINTS PR00355 Adrenodoxin signature 84 92 9.7E-11 T 22-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 RMA_RS01425 e5735163ab37caeaf4f10a866eb1cac6 112 SUPERFAMILY SSF54292 6 105 3.48E-32 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RMA_RS01425 e5735163ab37caeaf4f10a866eb1cac6 112 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 22-04-2016 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 RMA_RS05975 814c1aaa74c6e16c9e00fb23f5fb7560 632 Gene3D G3DSA:3.30.310.130 475 560 1.4E-6 T 22-04-2016 RMA_RS05975 814c1aaa74c6e16c9e00fb23f5fb7560 632 Pfam PF02902 Ulp1 protease family, C-terminal catalytic domain 479 568 6.0E-5 T 22-04-2016 IPR003653 Ulp1 protease family, C-terminal catalytic domain GO:0006508|GO:0008234 RMA_RS05975 814c1aaa74c6e16c9e00fb23f5fb7560 632 SUPERFAMILY SSF54001 443 594 1.2E-15 T 22-04-2016 RMA_RS01945 dc367a5f7189ce413e6cc443a643ce4a 152 ProDom PD203944 RP269 1 135 4.0E-75 T 22-04-2016 IPR022714 Protein of unknown function DUF2670 RMA_RS01945 dc367a5f7189ce413e6cc443a643ce4a 152 Pfam PF10875 Protein of unknown function (DUF2670) 1 139 1.1E-80 T 22-04-2016 IPR022714 Protein of unknown function DUF2670 RMA_RS06345 1e387b2c24dd7fabd0d67db139f0f3db 413 SUPERFAMILY SSF103473 1 412 3.53E-44 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS06345 1e387b2c24dd7fabd0d67db139f0f3db 413 Pfam PF07690 Major Facilitator Superfamily 14 353 1.3E-23 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RMA_RS06345 1e387b2c24dd7fabd0d67db139f0f3db 413 Gene3D G3DSA:1.20.1250.20 236 407 9.1E-7 T 22-04-2016 RMA_RS06345 1e387b2c24dd7fabd0d67db139f0f3db 413 PANTHER PTHR23508 5 413 2.8E-76 T 22-04-2016 RMA_RS06345 1e387b2c24dd7fabd0d67db139f0f3db 413 Gene3D G3DSA:1.20.1250.20 9 210 4.2E-17 T 22-04-2016 RMA_RS05010 7daf85c698ec272feecdac41f5a81185 76 SUPERFAMILY SSF47598 5 45 1.78E-7 T 22-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RMA_RS01415 012f9029486cd7460516d5c63f59c2a9 313 Pfam PF16868 NMT1-like family 28 306 2.4E-50 T 22-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RMA_RS01415 012f9029486cd7460516d5c63f59c2a9 313 PANTHER PTHR30024:SF13 21 260 1.4E-28 T 22-04-2016 RMA_RS01415 012f9029486cd7460516d5c63f59c2a9 313 PANTHER PTHR30024 21 260 1.4E-28 T 22-04-2016 RMA_RS01415 012f9029486cd7460516d5c63f59c2a9 313 Gene3D G3DSA:3.40.190.10 116 247 1.1E-20 T 22-04-2016 RMA_RS01415 012f9029486cd7460516d5c63f59c2a9 313 SUPERFAMILY SSF53850 23 283 3.35E-47 T 22-04-2016 RMA_RS01415 012f9029486cd7460516d5c63f59c2a9 313 Gene3D G3DSA:3.40.190.10 23 107 4.5E-31 T 22-04-2016 RMA_RS01415 012f9029486cd7460516d5c63f59c2a9 313 Gene3D G3DSA:3.40.190.10 248 307 4.5E-31 T 22-04-2016 RMA_RS01415 012f9029486cd7460516d5c63f59c2a9 313 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 7 296 4.8E-50 T 22-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RMA_RS02975 0201167e13956651ebd12e1c31a67bf3 205 Pfam PF04972 BON domain 126 187 1.3E-7 T 22-04-2016 IPR007055 BON domain RMA_RS02975 0201167e13956651ebd12e1c31a67bf3 205 Pfam PF04972 BON domain 44 112 4.5E-18 T 22-04-2016 IPR007055 BON domain RMA_RS02975 0201167e13956651ebd12e1c31a67bf3 205 PANTHER PTHR34606:SF4 2 186 3.4E-19 T 22-04-2016 RMA_RS02975 0201167e13956651ebd12e1c31a67bf3 205 PANTHER PTHR34606 2 186 3.4E-19 T 22-04-2016 RMA_RS01865 5734cb770eba247d56a04ea0840319c4 382 Gene3D G3DSA:1.20.1250.20 8 177 3.1E-8 T 22-04-2016 RMA_RS01865 5734cb770eba247d56a04ea0840319c4 382 SUPERFAMILY SSF103473 5 378 2.75E-15 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS06660 c818d44edac892989cf4a02f7326548b 473 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 5 472 2.3E-257 T 22-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06660 c818d44edac892989cf4a02f7326548b 473 PIRSF PIRSF039072 1 473 7.3E-275 T 22-04-2016 RMA_RS06660 c818d44edac892989cf4a02f7326548b 473 PANTHER PTHR15184 4 472 0.0 T 22-04-2016 RMA_RS06660 c818d44edac892989cf4a02f7326548b 473 Gene3D G3DSA:2.40.10.170 2 78 1.4E-33 T 22-04-2016 RMA_RS06660 c818d44edac892989cf4a02f7326548b 473 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 133 354 1.2E-59 T 22-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06660 c818d44edac892989cf4a02f7326548b 473 SMART SM00382 145 331 3.6E-4 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS06660 c818d44edac892989cf4a02f7326548b 473 SUPERFAMILY SSF50615 3 78 2.55E-25 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06660 c818d44edac892989cf4a02f7326548b 473 Hamap MF_01347 ATP synthase subunit beta [atpB]. 3 472 56.651 T 22-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06660 c818d44edac892989cf4a02f7326548b 473 PANTHER PTHR15184:SF44 4 472 0.0 T 22-04-2016 RMA_RS06660 c818d44edac892989cf4a02f7326548b 473 Gene3D G3DSA:3.40.50.300 79 355 8.7E-106 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06660 c818d44edac892989cf4a02f7326548b 473 Gene3D G3DSA:1.10.1140.10 357 472 4.9E-55 T 22-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06660 c818d44edac892989cf4a02f7326548b 473 SUPERFAMILY SSF47917 357 472 1.62E-53 T 22-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06660 c818d44edac892989cf4a02f7326548b 473 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 8 76 2.4E-22 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06660 c818d44edac892989cf4a02f7326548b 473 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 345 354 - T 22-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RMA_RS06660 c818d44edac892989cf4a02f7326548b 473 SUPERFAMILY SSF52540 80 360 6.83E-87 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01830 c4736ff305f511dfa9ce42f206e129c8 321 PANTHER PTHR23132 25 317 6.7E-62 T 22-04-2016 RMA_RS01830 c4736ff305f511dfa9ce42f206e129c8 321 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 259 288 - T 22-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS01830 c4736ff305f511dfa9ce42f206e129c8 321 Pfam PF07478 D-ala D-ala ligase C-terminus 147 315 4.5E-41 T 22-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS01830 c4736ff305f511dfa9ce42f206e129c8 321 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 83 94 - T 22-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS01830 c4736ff305f511dfa9ce42f206e129c8 321 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 25 317 2.9E-94 T 22-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS01830 c4736ff305f511dfa9ce42f206e129c8 321 Gene3D G3DSA:3.30.470.20 191 317 2.6E-38 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RMA_RS01830 c4736ff305f511dfa9ce42f206e129c8 321 Gene3D G3DSA:3.30.470.20 106 123 2.6E-38 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RMA_RS01830 c4736ff305f511dfa9ce42f206e129c8 321 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 23 318 31.931 T 22-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS01830 c4736ff305f511dfa9ce42f206e129c8 321 Pfam PF01820 D-ala D-ala ligase N-terminus 25 104 1.9E-18 T 22-04-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RMA_RS01830 c4736ff305f511dfa9ce42f206e129c8 321 SUPERFAMILY SSF52440 22 116 1.63E-28 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RMA_RS01830 c4736ff305f511dfa9ce42f206e129c8 321 Gene3D G3DSA:3.40.50.20 22 104 4.6E-25 T 22-04-2016 IPR016185 Pre-ATP-grasp domain RMA_RS01830 c4736ff305f511dfa9ce42f206e129c8 321 Gene3D G3DSA:3.30.1490.20 128 190 4.5E-9 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RMA_RS01830 c4736ff305f511dfa9ce42f206e129c8 321 SUPERFAMILY SSF56059 116 317 4.09E-40 T 22-04-2016 RMA_RS07175 5a227972a7bfead623bd9b8951f28fbe 111 PANTHER PTHR12919 2 111 3.0E-41 T 22-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS07175 5a227972a7bfead623bd9b8951f28fbe 111 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 82 5.1E-32 T 22-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS07175 5a227972a7bfead623bd9b8951f28fbe 111 SUPERFAMILY SSF54565 2 96 2.88E-30 T 22-04-2016 IPR023803 Ribosomal protein S16 domain RMA_RS07175 5a227972a7bfead623bd9b8951f28fbe 111 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 80 23.752 T 22-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS07175 5a227972a7bfead623bd9b8951f28fbe 111 ProSitePatterns PS00732 Ribosomal protein S16 signature. 3 12 - T 22-04-2016 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS07175 5a227972a7bfead623bd9b8951f28fbe 111 Pfam PF00886 Ribosomal protein S16 9 70 6.1E-25 T 22-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS07175 5a227972a7bfead623bd9b8951f28fbe 111 Gene3D G3DSA:3.30.1320.10 2 82 3.6E-32 T 22-04-2016 IPR023803 Ribosomal protein S16 domain RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 PANTHER PTHR11206:SF90 265 471 6.8E-60 T 22-04-2016 RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 PANTHER PTHR11206 265 471 6.8E-60 T 22-04-2016 RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 PANTHER PTHR11206 117 129 6.8E-60 T 22-04-2016 RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 PRINTS PR01806 Virulence factor MviN signature 100 116 1.4E-70 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 PRINTS PR01806 Virulence factor MviN signature 204 225 1.4E-70 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 PRINTS PR01806 Virulence factor MviN signature 81 100 1.4E-70 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 PRINTS PR01806 Virulence factor MviN signature 454 471 1.4E-70 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 PRINTS PR01806 Virulence factor MviN signature 304 330 1.4E-70 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 PRINTS PR01806 Virulence factor MviN signature 402 421 1.4E-70 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 PRINTS PR01806 Virulence factor MviN signature 180 204 1.4E-70 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 51 547 1.3E-123 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 PIRSF PIRSF002869 46 555 7.7E-175 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 4 48 1.2E-21 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 PANTHER PTHR11206:SF90 117 129 6.8E-60 T 22-04-2016 RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 Pfam PF03023 MviN-like protein 76 524 8.3E-148 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 PANTHER PTHR11206:SF90 165 170 6.8E-60 T 22-04-2016 RMA_RS05040 1f269b69ee9f19beb635b959ea120fe5 555 PANTHER PTHR11206 165 170 6.8E-60 T 22-04-2016 RMA_RS04095 339fa386c2a5d0dbccf9a36c3240355e 342 Gene3D G3DSA:3.20.20.70 29 340 8.8E-119 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RMA_RS04095 339fa386c2a5d0dbccf9a36c3240355e 342 PANTHER PTHR10578:SF3 248 340 3.2E-110 T 22-04-2016 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 RMA_RS04095 339fa386c2a5d0dbccf9a36c3240355e 342 PANTHER PTHR10578:SF3 30 226 3.2E-110 T 22-04-2016 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 RMA_RS04095 339fa386c2a5d0dbccf9a36c3240355e 342 PANTHER PTHR10578 248 340 3.2E-110 T 22-04-2016 RMA_RS04095 339fa386c2a5d0dbccf9a36c3240355e 342 PANTHER PTHR10578 30 226 3.2E-110 T 22-04-2016 RMA_RS04095 339fa386c2a5d0dbccf9a36c3240355e 342 Hamap MF_00354 Isopentenyl-diphosphate delta-isomerase [fni]. 8 342 39.45 T 22-04-2016 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 RMA_RS04095 339fa386c2a5d0dbccf9a36c3240355e 342 TIGRFAM TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2 10 340 9.0E-133 T 22-04-2016 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 RMA_RS04095 339fa386c2a5d0dbccf9a36c3240355e 342 SUPERFAMILY SSF51395 30 339 9.77E-75 T 22-04-2016 RMA_RS04095 339fa386c2a5d0dbccf9a36c3240355e 342 Pfam PF01070 FMN-dependent dehydrogenase 170 340 5.3E-15 T 22-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 RMA_RS04095 339fa386c2a5d0dbccf9a36c3240355e 342 Pfam PF01070 FMN-dependent dehydrogenase 29 101 8.0E-9 T 22-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 RMA_RS04095 339fa386c2a5d0dbccf9a36c3240355e 342 PIRSF PIRSF003314 5 342 7.2E-123 T 22-04-2016 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 RMA_RS06555 fb190ba79928caa3ad2a0d20e034ad0c 251 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 2 242 16.975 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RMA_RS06555 fb190ba79928caa3ad2a0d20e034ad0c 251 PANTHER PTHR30371:SF0 5 242 3.9E-72 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RMA_RS06555 fb190ba79928caa3ad2a0d20e034ad0c 251 ProSitePatterns PS01218 TatC family signature. 156 175 - T 22-04-2016 IPR019820 Sec-independent periplasmic protein translocase, conserved site RMA_RS06555 fb190ba79928caa3ad2a0d20e034ad0c 251 PANTHER PTHR30371 5 242 3.9E-72 T 22-04-2016 RMA_RS06555 fb190ba79928caa3ad2a0d20e034ad0c 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 156 184 2.46E-34 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RMA_RS06555 fb190ba79928caa3ad2a0d20e034ad0c 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 101 127 2.46E-34 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RMA_RS06555 fb190ba79928caa3ad2a0d20e034ad0c 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 5 32 2.46E-34 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RMA_RS06555 fb190ba79928caa3ad2a0d20e034ad0c 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 83 101 2.46E-34 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RMA_RS06555 fb190ba79928caa3ad2a0d20e034ad0c 251 Pfam PF00902 Sec-independent protein translocase protein (TatC) 8 223 3.9E-60 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RMA_RS06555 fb190ba79928caa3ad2a0d20e034ad0c 251 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 7 228 3.4E-58 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RMA_RS04555 dd8322df3e8902aefd1d9c5206ef7896 265 PANTHER PTHR18895 2 109 5.8E-20 T 22-04-2016 RMA_RS04555 dd8322df3e8902aefd1d9c5206ef7896 265 Pfam PF03602 Conserved hypothetical protein 95 164 232 2.5E-14 T 22-04-2016 RMA_RS04555 dd8322df3e8902aefd1d9c5206ef7896 265 Pfam PF03602 Conserved hypothetical protein 95 2 115 3.9E-22 T 22-04-2016 RMA_RS04555 dd8322df3e8902aefd1d9c5206ef7896 265 PANTHER PTHR18895 162 230 5.8E-20 T 22-04-2016 RMA_RS04555 dd8322df3e8902aefd1d9c5206ef7896 265 PANTHER PTHR18895:SF60 2 109 5.8E-20 T 22-04-2016 RMA_RS04555 dd8322df3e8902aefd1d9c5206ef7896 265 PANTHER PTHR18895:SF60 162 230 5.8E-20 T 22-04-2016 RMA_RS04555 dd8322df3e8902aefd1d9c5206ef7896 265 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 171 177 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RMA_RS04555 dd8322df3e8902aefd1d9c5206ef7896 265 Gene3D G3DSA:3.40.50.150 170 234 5.4E-50 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS04555 dd8322df3e8902aefd1d9c5206ef7896 265 Gene3D G3DSA:3.40.50.150 2 121 5.4E-50 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS04555 dd8322df3e8902aefd1d9c5206ef7896 265 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 117 164 1.6E-24 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS04555 dd8322df3e8902aefd1d9c5206ef7896 265 SUPERFAMILY SSF53335 2 116 7.71E-35 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS04555 dd8322df3e8902aefd1d9c5206ef7896 265 SUPERFAMILY SSF53335 162 231 7.71E-35 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS00085 7484856d99c78efe5c97e25f6d8e21c6 177 SUPERFAMILY SSF52540 17 136 7.07E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00085 7484856d99c78efe5c97e25f6d8e21c6 177 PANTHER PTHR33540:SF2 3 155 1.5E-36 T 22-04-2016 RMA_RS00085 7484856d99c78efe5c97e25f6d8e21c6 177 PANTHER PTHR33540 3 155 1.5E-36 T 22-04-2016 RMA_RS00085 7484856d99c78efe5c97e25f6d8e21c6 177 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 5 131 3.2E-29 T 22-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RMA_RS00085 7484856d99c78efe5c97e25f6d8e21c6 177 Gene3D G3DSA:3.40.50.300 2 143 6.1E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00085 7484856d99c78efe5c97e25f6d8e21c6 177 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 5 126 4.1E-34 T 22-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RMA_RS02115 883c466e2e466b20c18976e398da87e1 433 PANTHER PTHR22773 1 425 1.4E-47 T 22-04-2016 RMA_RS02115 883c466e2e466b20c18976e398da87e1 433 Pfam PF00361 Proton-conducting membrane transporter 137 405 1.2E-25 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RMA_RS02115 883c466e2e466b20c18976e398da87e1 433 PANTHER PTHR22773:SF49 1 425 1.4E-47 T 22-04-2016 RMA_RS04115 ca9ca8dcae3fd8193588fc799a03f88f 155 PANTHER PTHR30547 1 151 6.3E-71 T 22-04-2016 RMA_RS04115 ca9ca8dcae3fd8193588fc799a03f88f 155 Pfam PF06250 Protein of unknown function (DUF1016) 2 149 1.1E-64 T 22-04-2016 IPR009362 Protein of unknown function DUF1016 RMA_RS04115 ca9ca8dcae3fd8193588fc799a03f88f 155 PANTHER PTHR30547:SF0 1 151 6.3E-71 T 22-04-2016 RMA_RS00800 8e5da16998b321f59591de5c9fcab3d5 95 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 8 89 1.1E-24 T 22-04-2016 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB RMA_RS06700 2e67057afd816942c551e2d6599b9b73 82 SUPERFAMILY SSF56601 8 78 8.59E-8 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS06700 2e67057afd816942c551e2d6599b9b73 82 Pfam PF00905 Penicillin binding protein transpeptidase domain 9 76 2.9E-8 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RMA_RS06700 2e67057afd816942c551e2d6599b9b73 82 Gene3D G3DSA:3.40.710.10 4 81 1.8E-14 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS01810 eed5de8ddbd29691888ae664df42e647 80 PANTHER PTHR12735:SF21 1 79 9.5E-13 T 22-04-2016 RMA_RS01810 eed5de8ddbd29691888ae664df42e647 80 Pfam PF01722 BolA-like protein 14 79 1.2E-19 T 22-04-2016 IPR002634 BolA protein RMA_RS01810 eed5de8ddbd29691888ae664df42e647 80 Gene3D G3DSA:3.30.70.1500 2 79 8.7E-20 T 22-04-2016 RMA_RS01810 eed5de8ddbd29691888ae664df42e647 80 SUPERFAMILY SSF82657 2 78 3.01E-16 T 22-04-2016 IPR002634 BolA protein RMA_RS01810 eed5de8ddbd29691888ae664df42e647 80 PIRSF PIRSF003113 1 80 3.9E-20 T 22-04-2016 IPR002634 BolA protein RMA_RS01810 eed5de8ddbd29691888ae664df42e647 80 PANTHER PTHR12735 1 79 9.5E-13 T 22-04-2016 RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 PANTHER PTHR11451 232 419 3.0E-132 T 22-04-2016 RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 PANTHER PTHR11451 4 216 3.0E-132 T 22-04-2016 RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 225 4.0E-101 T 22-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 Gene3D G3DSA:3.30.930.10 11 331 9.3E-93 T 22-04-2016 RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 PANTHER PTHR11451:SF3 232 419 3.0E-132 T 22-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 PANTHER PTHR11451:SF3 4 216 3.0E-132 T 22-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 SUPERFAMILY SSF52954 324 425 6.38E-25 T 22-04-2016 IPR004154 Anticodon-binding RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 320 8.8E-36 T 22-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 Hamap MF_01570 Proline--tRNA ligase [proS]. 1 428 58.404 T 22-04-2016 IPR023716 Proline-tRNA ligase, class IIa, type 2 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 3.4E-13 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 3.4E-13 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 3.4E-13 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 3.4E-13 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 SUPERFAMILY SSF55681 10 231 3.78E-89 T 22-04-2016 RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 SUPERFAMILY SSF55681 268 338 3.78E-89 T 22-04-2016 RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 Gene3D G3DSA:3.40.50.800 332 419 2.6E-22 T 22-04-2016 IPR004154 Anticodon-binding RMA_RS02915 df94765f5af884b5eaa01711fac1a677 428 Pfam PF03129 Anticodon binding domain 336 420 9.3E-17 T 22-04-2016 IPR004154 Anticodon-binding RMA_RS02120 7caed47b207419bb80eaada1287e745b 111 PANTHER PTHR34583:SF2 1 107 4.4E-29 T 22-04-2016 RMA_RS02120 7caed47b207419bb80eaada1287e745b 111 PANTHER PTHR34583 1 107 4.4E-29 T 22-04-2016 RMA_RS02120 7caed47b207419bb80eaada1287e745b 111 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 107 1.8E-22 T 22-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RMA_RS07600 29f4bb8c4006fbe1946bc6d969974e34 129 Pfam PF13612 Transposase DDE domain 2 118 2.8E-47 T 22-04-2016 IPR025668 Transposase DDE domain RMA_RS04325 fc0598124220631ea3612176010b0a8d 253 TIGRFAM TIGR03774 RPE2: rickettsial palindromic element RPE2 domain 103 137 6.2E-22 T 22-04-2016 IPR022436 Rickettsia palindromic element RPE2 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 SMART SM00863 656 699 1.2E-22 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 656 699 2.1E-19 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 Gene3D G3DSA:3.30.930.10 4 243 6.9E-111 T 22-04-2016 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 SUPERFAMILY SSF55681 4 247 1.96E-105 T 22-04-2016 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 8 858 2.8E-286 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 SUPERFAMILY SSF50447 455 553 4.94E-14 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 SUPERFAMILY SSF101353 249 463 6.41E-62 T 22-04-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 SUPERFAMILY SSF55186 555 714 1.44E-50 T 22-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 77 88 1.1E-31 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 276 292 1.1E-31 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 300 313 1.1E-31 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 201 212 1.1E-31 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 228 241 1.1E-31 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 Pfam PF01411 tRNA synthetases class II (A) 8 557 3.5E-223 T 22-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 PANTHER PTHR11777:SF9 1 876 0.0 T 22-04-2016 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 PANTHER PTHR11777 1 876 0.0 T 22-04-2016 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 Gene3D G3DSA:3.30.980.10 565 624 1.8E-6 T 22-04-2016 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 Gene3D G3DSA:3.30.980.10 675 686 1.8E-6 T 22-04-2016 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 878 175.62 T 22-04-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 RMA_RS07345 8b3df66de9e5e75c4a60c5325eb1f758 878 Pfam PF02272 DHHA1 domain 804 870 2.2E-8 T 22-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 RMA_RS00720 121bff7b79901a11ca9899feadf7f33f 199 Gene3D G3DSA:3.10.450.50 30 67 6.3E-9 T 22-04-2016 IPR032710 NTF2-like domain RMA_RS00720 121bff7b79901a11ca9899feadf7f33f 199 Gene3D G3DSA:3.10.450.50 111 170 6.3E-9 T 22-04-2016 IPR032710 NTF2-like domain RMA_RS00720 121bff7b79901a11ca9899feadf7f33f 199 Gene3D G3DSA:1.10.10.640 68 108 6.2E-9 T 22-04-2016 IPR023094 Toluene tolerance protein, alpha-helical RMA_RS00720 121bff7b79901a11ca9899feadf7f33f 199 Gene3D G3DSA:1.10.10.640 171 198 6.2E-9 T 22-04-2016 IPR023094 Toluene tolerance protein, alpha-helical RMA_RS00720 121bff7b79901a11ca9899feadf7f33f 199 Pfam PF05494 MlaC protein 33 196 2.3E-36 T 22-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC RMA_RS00720 121bff7b79901a11ca9899feadf7f33f 199 PANTHER PTHR36573 1 198 5.0E-16 T 22-04-2016 RMA_RS03370 b6c70c5269e9da56ee40480cabaad163 475 Gene3D G3DSA:3.40.605.10 10 263 2.6E-87 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RMA_RS03370 b6c70c5269e9da56ee40480cabaad163 475 Gene3D G3DSA:3.40.309.10 264 445 8.1E-66 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RMA_RS03370 b6c70c5269e9da56ee40480cabaad163 475 SUPERFAMILY SSF53720 6 474 3.01E-153 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RMA_RS03370 b6c70c5269e9da56ee40480cabaad163 475 PANTHER PTHR11699:SF49 10 475 2.5E-236 T 22-04-2016 RMA_RS03370 b6c70c5269e9da56ee40480cabaad163 475 Pfam PF00171 Aldehyde dehydrogenase family 22 470 1.7E-155 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RMA_RS03370 b6c70c5269e9da56ee40480cabaad163 475 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 250 257 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 RMA_RS03370 b6c70c5269e9da56ee40480cabaad163 475 PANTHER PTHR11699 10 475 2.5E-236 T 22-04-2016 RMA_RS01320 0c50782fb32ff11ab98f02364a9e9dff 179 Gene3D G3DSA:1.20.1260.10 10 133 1.1E-4 T 22-04-2016 IPR012347 Ferritin-related RMA_RS01320 0c50782fb32ff11ab98f02364a9e9dff 179 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 13 179 3.9E-55 T 22-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 RMA_RS01320 0c50782fb32ff11ab98f02364a9e9dff 179 PANTHER PTHR11237 10 179 3.6E-70 T 22-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 RMA_RS01320 0c50782fb32ff11ab98f02364a9e9dff 179 SUPERFAMILY SSF47240 4 89 1.08E-12 T 22-04-2016 IPR009078 Ferritin-like superfamily RMA_RS02100 878d897c57d9ab0a9da642a3756bee48 37 Gene3D G3DSA:3.40.50.1010 1 34 5.5E-11 T 22-04-2016 IPR029060 PIN domain-like RMA_RS02100 878d897c57d9ab0a9da642a3756bee48 37 SUPERFAMILY SSF88723 1 33 1.14E-8 T 22-04-2016 IPR029060 PIN domain-like RMA_RS01875 cf3aab53272ac4a63d9af4219db6b0a6 337 Pfam PF02628 Cytochrome oxidase assembly protein 8 327 2.6E-100 T 22-04-2016 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 UniPathway: UPA00269 RMA_RS01875 cf3aab53272ac4a63d9af4219db6b0a6 337 PANTHER PTHR23289:SF2 5 329 1.2E-98 T 22-04-2016 RMA_RS01875 cf3aab53272ac4a63d9af4219db6b0a6 337 PANTHER PTHR23289 5 329 1.2E-98 T 22-04-2016 RMA_RS01875 cf3aab53272ac4a63d9af4219db6b0a6 337 Hamap MF_01665 Heme A synthase [ctaA]. 3 337 22.817 T 22-04-2016 IPR023754 Heme A synthase, type 2 GO:0006784|GO:0016020|GO:0016627|GO:0055114 UniPathway: UPA00269 RMA_RS00415 ef2740563b1fc68e7c9aed48a677f249 406 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 329 376 1.1E-27 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS00415 ef2740563b1fc68e7c9aed48a677f249 406 SUPERFAMILY SSF53335 6 336 2.65E-89 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS00415 ef2740563b1fc68e7c9aed48a677f249 406 PANTHER PTHR12049:SF7 11 349 3.0E-70 T 22-04-2016 RMA_RS00415 ef2740563b1fc68e7c9aed48a677f249 406 PANTHER PTHR12049:SF7 392 406 3.0E-70 T 22-04-2016 RMA_RS00415 ef2740563b1fc68e7c9aed48a677f249 406 PANTHER PTHR12049 11 349 3.0E-70 T 22-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA RMA_RS00415 ef2740563b1fc68e7c9aed48a677f249 406 PANTHER PTHR12049 392 406 3.0E-70 T 22-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA RMA_RS00415 ef2740563b1fc68e7c9aed48a677f249 406 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 61 300 3.0E-55 T 22-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA RMA_RS06850 b466cb7a57d53df0a0d7a887a1aaa8c1 305 Pfam PF00589 Phage integrase family 126 288 1.4E-30 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RMA_RS06850 b466cb7a57d53df0a0d7a887a1aaa8c1 305 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 6 304 29.952 T 22-04-2016 IPR023009 Tyrosine recombinase XerC/XerD RMA_RS06850 b466cb7a57d53df0a0d7a887a1aaa8c1 305 PANTHER PTHR30349:SF5 4 302 4.8E-65 T 22-04-2016 RMA_RS06850 b466cb7a57d53df0a0d7a887a1aaa8c1 305 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 10 95 8.5E-22 T 22-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RMA_RS06850 b466cb7a57d53df0a0d7a887a1aaa8c1 305 PANTHER PTHR30349 4 302 4.8E-65 T 22-04-2016 RMA_RS06850 b466cb7a57d53df0a0d7a887a1aaa8c1 305 Gene3D G3DSA:1.10.443.10 120 297 1.3E-41 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RMA_RS06850 b466cb7a57d53df0a0d7a887a1aaa8c1 305 SUPERFAMILY SSF56349 6 293 5.3E-46 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RMA_RS06850 b466cb7a57d53df0a0d7a887a1aaa8c1 305 Gene3D G3DSA:1.10.150.130 7 101 6.1E-19 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal RMA_RS01340 d228e2a1cd038b67736cd4ea079b7016 274 SUPERFAMILY SSF51161 32 259 9.56E-64 T 22-04-2016 IPR011004 Trimeric LpxA-like RMA_RS01340 d228e2a1cd038b67736cd4ea079b7016 274 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 177 211 9.3E-13 T 22-04-2016 IPR001451 Hexapeptide repeat RMA_RS01340 d228e2a1cd038b67736cd4ea079b7016 274 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 4 274 2.5E-150 T 22-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RMA_RS01340 d228e2a1cd038b67736cd4ea079b7016 274 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 4 68 3.3E-20 T 22-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RMA_RS01340 d228e2a1cd038b67736cd4ea079b7016 274 Gene3D G3DSA:1.10.166.10 1 68 1.4E-21 T 22-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RMA_RS01340 d228e2a1cd038b67736cd4ea079b7016 274 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 274 51.994 T 22-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RMA_RS01340 d228e2a1cd038b67736cd4ea079b7016 274 Gene3D G3DSA:2.160.10.10 93 257 3.2E-53 T 22-04-2016 RMA_RS01340 d228e2a1cd038b67736cd4ea079b7016 274 PANTHER PTHR19136 17 274 1.7E-107 T 22-04-2016 RMA_RS01340 d228e2a1cd038b67736cd4ea079b7016 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 134 168 8.0E-6 T 22-04-2016 IPR001451 Hexapeptide repeat RMA_RS01340 d228e2a1cd038b67736cd4ea079b7016 274 PANTHER PTHR19136:SF52 17 274 1.7E-107 T 22-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RMA_RS01600 afe9b30197a70b12a9f27fb2faf308d6 282 SUPERFAMILY SSF53448 8 230 3.62E-20 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RMA_RS01600 afe9b30197a70b12a9f27fb2faf308d6 282 Gene3D G3DSA:3.90.550.10 8 166 4.2E-9 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RMA_RS01600 afe9b30197a70b12a9f27fb2faf308d6 282 PANTHER PTHR10859:SF99 6 141 1.0E-20 T 22-04-2016 RMA_RS01600 afe9b30197a70b12a9f27fb2faf308d6 282 Pfam PF00535 Glycosyl transferase family 2 10 97 3.6E-15 T 22-04-2016 IPR001173 Glycosyltransferase 2-like RMA_RS01600 afe9b30197a70b12a9f27fb2faf308d6 282 PANTHER PTHR10859 6 141 1.0E-20 T 22-04-2016 RMA_RS01740 cc4812bfccdd9babaa219f619e3ac413 99 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 18 97 4.9E-26 T 22-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RMA_RS01740 cc4812bfccdd9babaa219f619e3ac413 99 SUPERFAMILY SSF55248 16 97 6.15E-26 T 22-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RMA_RS01740 cc4812bfccdd9babaa219f619e3ac413 99 PANTHER PTHR12599 1 96 6.2E-23 T 22-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RMA_RS01740 cc4812bfccdd9babaa219f619e3ac413 99 Gene3D G3DSA:3.30.1360.20 36 97 9.5E-24 T 22-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RMA_RS05030 c9c0fd80ee10944306b1d3700acd0e22 128 SUPERFAMILY SSF82093 31 128 3.27E-28 T 22-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RMA_RS05030 c9c0fd80ee10944306b1d3700acd0e22 128 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 128 24.258 T 22-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RMA_RS05030 c9c0fd80ee10944306b1d3700acd0e22 128 PANTHER PTHR34128:SF1 1 127 1.1E-32 T 22-04-2016 RMA_RS05030 c9c0fd80ee10944306b1d3700acd0e22 128 Gene3D G3DSA:2.40.50.140 26 121 1.4E-27 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS05030 c9c0fd80ee10944306b1d3700acd0e22 128 PANTHER PTHR34128 1 127 1.1E-32 T 22-04-2016 RMA_RS05030 c9c0fd80ee10944306b1d3700acd0e22 128 Pfam PF03100 CcmE 6 127 1.7E-33 T 22-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RMA_RS05530 00b80751d075b02a6fb1e09a902bdd32 119 Gene3D G3DSA:3.30.420.100 23 115 1.3E-35 T 22-04-2016 RMA_RS05530 00b80751d075b02a6fb1e09a902bdd32 119 PANTHER PTHR12899 12 115 2.6E-34 T 22-04-2016 RMA_RS05530 00b80751d075b02a6fb1e09a902bdd32 119 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 10 116 4.4E-41 T 22-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05530 00b80751d075b02a6fb1e09a902bdd32 119 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 8 116 3.1E-42 T 22-04-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05530 00b80751d075b02a6fb1e09a902bdd32 119 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 4 119 27.062 T 22-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05530 00b80751d075b02a6fb1e09a902bdd32 119 SUPERFAMILY SSF53137 8 115 2.01E-45 T 22-04-2016 RMA_RS02150 109c0dbd8a868e7ed4a9f40fd66a7ac7 480 Pfam PF03743 Bacterial conjugation TrbI-like protein 191 468 1.2E-34 T 22-04-2016 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI RMA_RS02320 e0298a89e7488f2ff4b294e07e247098 324 Gene3D G3DSA:3.30.1150.10 202 322 3.2E-9 T 22-04-2016 RMA_RS02320 e0298a89e7488f2ff4b294e07e247098 324 SUPERFAMILY SSF74653 214 322 9.42E-12 T 22-04-2016 RMA_RS02950 0127d1d41fcd3c8ffc09f87fab7e1a63 343 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 343 155.235 T 22-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RMA_RS02950 0127d1d41fcd3c8ffc09f87fab7e1a63 343 Gene3D G3DSA:1.10.10.10 256 327 2.5E-31 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RMA_RS02950 0127d1d41fcd3c8ffc09f87fab7e1a63 343 PANTHER PTHR13779:SF25 9 331 9.0E-158 T 22-04-2016 RMA_RS02950 0127d1d41fcd3c8ffc09f87fab7e1a63 343 Gene3D G3DSA:3.40.50.300 19 173 5.0E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02950 0127d1d41fcd3c8ffc09f87fab7e1a63 343 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 250 324 7.0E-37 T 22-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RMA_RS02950 0127d1d41fcd3c8ffc09f87fab7e1a63 343 SUPERFAMILY SSF52540 19 246 2.57E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02950 0127d1d41fcd3c8ffc09f87fab7e1a63 343 PANTHER PTHR13779 9 331 9.0E-158 T 22-04-2016 RMA_RS02950 0127d1d41fcd3c8ffc09f87fab7e1a63 343 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 24 326 3.8E-137 T 22-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RMA_RS02950 0127d1d41fcd3c8ffc09f87fab7e1a63 343 SUPERFAMILY SSF46785 255 329 1.36E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RMA_RS02950 0127d1d41fcd3c8ffc09f87fab7e1a63 343 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 8 234 4.5E-111 T 22-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 RMA_RS02950 0127d1d41fcd3c8ffc09f87fab7e1a63 343 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 252 325 4.5E-31 T 22-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RMA_RS02950 0127d1d41fcd3c8ffc09f87fab7e1a63 343 SMART SM00382 50 181 8.3E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS02950 0127d1d41fcd3c8ffc09f87fab7e1a63 343 Gene3D G3DSA:1.10.8.60 182 254 3.7E-28 T 22-04-2016 RMA_RS03965 1428cf1d52667be70f6d91e9f51955c5 183 Pfam PF00665 Integrase core domain 1 103 9.2E-21 T 22-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RMA_RS03965 1428cf1d52667be70f6d91e9f51955c5 183 SUPERFAMILY SSF53098 3 153 1.52E-30 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS03965 1428cf1d52667be70f6d91e9f51955c5 183 PANTHER PTHR24559 6 104 6.6E-13 T 22-04-2016 RMA_RS03965 1428cf1d52667be70f6d91e9f51955c5 183 Gene3D G3DSA:3.30.420.10 3 138 1.3E-26 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS07200 db1d031a0bf35d5d9ea8fde35a59930f 393 Pfam PF06965 Na+/H+ antiporter 1 9 386 3.1E-109 T 22-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RMA_RS07200 db1d031a0bf35d5d9ea8fde35a59930f 393 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 7 393 19.455 T 22-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RMA_RS07200 db1d031a0bf35d5d9ea8fde35a59930f 393 PANTHER PTHR30341:SF0 1 387 1.2E-110 T 22-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RMA_RS07200 db1d031a0bf35d5d9ea8fde35a59930f 393 PANTHER PTHR30341 1 387 1.2E-110 T 22-04-2016 RMA_RS07200 db1d031a0bf35d5d9ea8fde35a59930f 393 Gene3D G3DSA:1.20.1530.10 6 390 2.2E-118 T 22-04-2016 IPR023171 Na/H antiporter domain RMA_RS07200 db1d031a0bf35d5d9ea8fde35a59930f 393 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 11 386 8.1E-102 T 22-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 Gene3D G3DSA:3.50.50.60 3 246 3.5E-129 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 Gene3D G3DSA:3.50.50.60 354 427 3.5E-129 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 Gene3D G3DSA:1.20.58.100 436 542 2.6E-40 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 Gene3D G3DSA:3.90.700.10 247 352 6.7E-43 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 SUPERFAMILY SSF51905 362 438 1.58E-80 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 SUPERFAMILY SSF51905 8 263 1.58E-80 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 10 596 0.0 T 22-04-2016 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 PIRSF PIRSF000171 2 585 1.5E-42 T 22-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 SUPERFAMILY SSF46977 454 596 4.58E-51 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 Pfam PF00890 FAD binding domain 13 408 5.5E-130 T 22-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 SUPERFAMILY SSF56425 240 358 3.29E-42 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 PANTHER PTHR11632:SF51 1 591 0.0 T 22-04-2016 RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 Pfam PF02910 Fumarate reductase flavoprotein C-term 463 596 1.8E-43 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 PANTHER PTHR11632 1 591 0.0 T 22-04-2016 RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 Gene3D G3DSA:4.10.80.40 543 596 1.2E-28 T 22-04-2016 RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 13 596 4.5E-262 T 22-04-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RMA_RS00950 4ed08e85e2e4fb77b7e585a34299f25c 596 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 47 56 - T 22-04-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 RMA_RS05400 05a49ebe3be9944a411f7254ee9db5fc 95 PANTHER PTHR10772 1 94 7.2E-40 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RMA_RS05400 05a49ebe3be9944a411f7254ee9db5fc 95 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 22-04-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 RMA_RS05400 05a49ebe3be9944a411f7254ee9db5fc 95 Gene3D G3DSA:2.30.33.40 2 94 1.5E-35 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RMA_RS05400 05a49ebe3be9944a411f7254ee9db5fc 95 PRINTS PR00297 10kDa chaperonin signature 3 18 1.7E-30 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RMA_RS05400 05a49ebe3be9944a411f7254ee9db5fc 95 PRINTS PR00297 10kDa chaperonin signature 25 46 1.7E-30 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RMA_RS05400 05a49ebe3be9944a411f7254ee9db5fc 95 PRINTS PR00297 10kDa chaperonin signature 60 72 1.7E-30 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RMA_RS05400 05a49ebe3be9944a411f7254ee9db5fc 95 PRINTS PR00297 10kDa chaperonin signature 81 94 1.7E-30 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RMA_RS05400 05a49ebe3be9944a411f7254ee9db5fc 95 SUPERFAMILY SSF50129 1 94 2.35E-33 T 22-04-2016 IPR011032 GroES-like RMA_RS05400 05a49ebe3be9944a411f7254ee9db5fc 95 SMART SM00883 2 94 1.2E-50 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RMA_RS05400 05a49ebe3be9944a411f7254ee9db5fc 95 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 25.338 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RMA_RS05400 05a49ebe3be9944a411f7254ee9db5fc 95 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 8.9E-33 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RMA_RS06390 7d9ba9957d6854c2444ddf855a2da9a0 176 PANTHER PTHR23501 1 139 7.3E-19 T 22-04-2016 RMA_RS06390 7d9ba9957d6854c2444ddf855a2da9a0 176 SUPERFAMILY SSF103473 89 143 1.7E-5 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS06390 7d9ba9957d6854c2444ddf855a2da9a0 176 SUPERFAMILY SSF103473 1 41 1.7E-5 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS07160 652282c63a390222404f865c80871d13 183 PANTHER PTHR24322:SF462 78 110 6.2E-37 T 22-04-2016 RMA_RS07160 652282c63a390222404f865c80871d13 183 PANTHER PTHR24322:SF462 3 62 6.2E-37 T 22-04-2016 RMA_RS07160 652282c63a390222404f865c80871d13 183 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 52 68 8.1E-30 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS07160 652282c63a390222404f865c80871d13 183 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 99 116 8.1E-30 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS07160 652282c63a390222404f865c80871d13 183 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 16 8.1E-30 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS07160 652282c63a390222404f865c80871d13 183 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 97 8.1E-30 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS07160 652282c63a390222404f865c80871d13 183 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 164 8.1E-30 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS07160 652282c63a390222404f865c80871d13 183 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 97 3.4E-14 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS07160 652282c63a390222404f865c80871d13 183 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 58 66 3.4E-14 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS07160 652282c63a390222404f865c80871d13 183 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 5 16 3.4E-14 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS07160 652282c63a390222404f865c80871d13 183 PANTHER PTHR24322 78 110 6.2E-37 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS07160 652282c63a390222404f865c80871d13 183 PANTHER PTHR24322 3 62 6.2E-37 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RMA_RS07160 652282c63a390222404f865c80871d13 183 Gene3D G3DSA:3.40.50.720 2 182 7.4E-58 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS07160 652282c63a390222404f865c80871d13 183 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 65 93 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RMA_RS07160 652282c63a390222404f865c80871d13 183 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 2 181 1.6E-43 T 22-04-2016 RMA_RS07160 652282c63a390222404f865c80871d13 183 SUPERFAMILY SSF51735 2 182 7.15E-56 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 4 460 2.3E-248 T 22-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 Gene3D G3DSA:1.10.40.30 405 462 3.1E-31 T 22-04-2016 RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 22-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 Pfam PF10415 Fumarase C C-terminus 408 460 5.7E-26 T 22-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 PANTHER PTHR11444 1 462 4.4E-251 T 22-04-2016 IPR000362 Fumarate lyase family RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 Gene3D G3DSA:1.10.275.10 3 138 1.5E-59 T 22-04-2016 IPR024083 Fumarase/histidase, N-terminal RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 462 89.828 T 22-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 PRINTS PR00145 Argininosuccinate lyase family signature 317 333 3.6E-5 T 22-04-2016 RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 PRINTS PR00145 Argininosuccinate lyase family signature 133 155 3.6E-5 T 22-04-2016 RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 PRINTS PR00145 Argininosuccinate lyase family signature 175 195 3.6E-5 T 22-04-2016 RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 SUPERFAMILY SSF48557 4 461 2.67E-150 T 22-04-2016 IPR008948 L-Aspartase-like GO:0003824 RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 Pfam PF00206 Lyase 12 342 3.0E-111 T 22-04-2016 IPR022761 Fumarate lyase, N-terminal RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 PANTHER PTHR11444:SF1 1 462 4.4E-251 T 22-04-2016 RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 Gene3D G3DSA:1.20.200.10 139 400 1.7E-102 T 22-04-2016 RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 9.3E-36 T 22-04-2016 IPR000362 Fumarate lyase family RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 9.3E-36 T 22-04-2016 IPR000362 Fumarate lyase family RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 9.3E-36 T 22-04-2016 IPR000362 Fumarate lyase family RMA_RS05645 7a88d40d3fbdb6410f7a1a6bd480d247 463 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 9.3E-36 T 22-04-2016 IPR000362 Fumarate lyase family RMA_RS06035 ce618a755665b974218a0913742ff818 290 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 1 290 5.6E-90 T 22-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RMA_RS06035 ce618a755665b974218a0913742ff818 290 PANTHER PTHR30606 1 290 1.5E-52 T 22-04-2016 RMA_RS01940 705e1e73befd759ea7fd3cfd55a12dcc 215 Pfam PF03379 CcmB protein 6 200 6.3E-8 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 765 783 - T 22-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 Gene3D G3DSA:3.50.30.10 408 510 2.6E-37 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 SUPERFAMILY SSF56059 1 385 5.18E-127 T 22-04-2016 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 21 298 5.0E-42 T 22-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 305 364 7.4E-11 T 22-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 Gene3D G3DSA:3.30.470.20 246 348 6.4E-37 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 Gene3D G3DSA:1.10.189.10 349 407 8.9E-27 T 22-04-2016 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 454 465 - T 22-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 PANTHER PTHR22931 1 877 0.0 T 22-04-2016 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 524 874 6.2E-84 T 22-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 Pfam PF00391 PEP-utilising enzyme, mobile domain 426 507 6.6E-27 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 PIRSF PIRSF000853 1 878 0.0 T 22-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 SUPERFAMILY SSF52009 397 516 4.06E-35 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 2 875 0.0 T 22-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 PANTHER PTHR22931:SF9 1 877 0.0 T 22-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 Gene3D G3DSA:3.20.20.60 537 876 6.9E-128 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 Gene3D G3DSA:3.30.1490.20 202 245 3.4E-51 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 Gene3D G3DSA:3.30.1490.20 4 114 3.4E-51 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 Gene3D G3DSA:1.20.80.30 115 195 2.8E-22 T 22-04-2016 RMA_RS03635 33a899f76c1ce1d0bd8da9e678fd8b7a 878 SUPERFAMILY SSF51621 516 876 9.74E-119 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RMA_RS03065 7d6bce6f08cd78392158ce995dfd7f96 184 SUPERFAMILY SSF52374 47 182 9.12E-20 T 22-04-2016 RMA_RS03065 7d6bce6f08cd78392158ce995dfd7f96 184 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 47 112 1.5E-16 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RMA_RS03065 7d6bce6f08cd78392158ce995dfd7f96 184 Pfam PF01467 Cytidylyltransferase-like 49 115 4.5E-11 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RMA_RS03065 7d6bce6f08cd78392158ce995dfd7f96 184 PANTHER PTHR10739 42 115 5.8E-19 T 22-04-2016 RMA_RS03065 7d6bce6f08cd78392158ce995dfd7f96 184 PANTHER PTHR10739:SF26 42 115 5.8E-19 T 22-04-2016 RMA_RS03065 7d6bce6f08cd78392158ce995dfd7f96 184 Gene3D G3DSA:3.40.50.620 46 184 1.4E-23 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 Gene3D G3DSA:3.50.50.60 3 118 8.7E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 236 257 4.02E-75 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 143 167 4.02E-75 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 271 289 4.02E-75 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 128 140 4.02E-75 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 39 54 4.02E-75 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 4.02E-75 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 60 70 4.02E-75 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 195 211 4.02E-75 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 106 114 4.02E-75 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 SUPERFAMILY SSF51905 1 306 3.73E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 Gene3D G3DSA:3.50.50.60 119 232 3.7E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 6 308 2.7E-131 T 22-04-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 Gene3D G3DSA:3.50.50.60 233 303 3.1E-7 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PANTHER PTHR22912 1 309 4.5E-159 T 22-04-2016 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PANTHER PTHR22912:SF48 1 309 4.5E-159 T 22-04-2016 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 297 1.6E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.86E-38 T 22-04-2016 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 2.86E-38 T 22-04-2016 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 2.86E-38 T 22-04-2016 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 2.86E-38 T 22-04-2016 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 2.86E-38 T 22-04-2016 RMA_RS03360 0db469cd51f7273fc1f60abc5835fda2 310 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 135 155 - T 22-04-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 RMA_RS05685 5e807ef00830f8f89d4b153ea9fcdb71 398 SUPERFAMILY SSF103473 3 394 3.01E-27 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS05685 5e807ef00830f8f89d4b153ea9fcdb71 398 Gene3D G3DSA:1.20.1250.20 4 186 2.2E-8 T 22-04-2016 RMA_RS05685 5e807ef00830f8f89d4b153ea9fcdb71 398 Pfam PF07690 Major Facilitator Superfamily 8 329 4.5E-13 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RMA_RS05685 5e807ef00830f8f89d4b153ea9fcdb71 398 PANTHER PTHR12778 1 389 3.2E-30 T 22-04-2016 RMA_RS05685 5e807ef00830f8f89d4b153ea9fcdb71 398 Gene3D G3DSA:1.20.1250.20 214 393 1.8E-14 T 22-04-2016 RMA_RS04425 9a3c09886cff3e8d71da9c1788798fe2 139 PANTHER PTHR33221:SF1 2 131 1.6E-38 T 22-04-2016 RMA_RS04425 9a3c09886cff3e8d71da9c1788798fe2 139 Pfam PF02082 Transcriptional regulator 1 83 8.9E-24 T 22-04-2016 IPR000944 Transcription regulator Rrf2-type RMA_RS04425 9a3c09886cff3e8d71da9c1788798fe2 139 PANTHER PTHR33221 2 131 1.6E-38 T 22-04-2016 RMA_RS04425 9a3c09886cff3e8d71da9c1788798fe2 139 SUPERFAMILY SSF46785 2 134 6.96E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RMA_RS04425 9a3c09886cff3e8d71da9c1788798fe2 139 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 132 1.3E-35 T 22-04-2016 IPR000944 Transcription regulator Rrf2-type RMA_RS04425 9a3c09886cff3e8d71da9c1788798fe2 139 Gene3D G3DSA:1.10.10.10 1 134 1.6E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RMA_RS00590 134499859f1fa784d9fb21e8e0e50623 152 Hamap MF_00821 Protein-export protein SecB [secB]. 1 151 28.967 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RMA_RS00590 134499859f1fa784d9fb21e8e0e50623 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 103 125 2.1E-28 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RMA_RS00590 134499859f1fa784d9fb21e8e0e50623 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 129 147 2.1E-28 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RMA_RS00590 134499859f1fa784d9fb21e8e0e50623 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 79 99 2.1E-28 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RMA_RS00590 134499859f1fa784d9fb21e8e0e50623 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 17 34 2.1E-28 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RMA_RS00590 134499859f1fa784d9fb21e8e0e50623 152 SUPERFAMILY SSF54611 14 147 4.58E-43 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RMA_RS00590 134499859f1fa784d9fb21e8e0e50623 152 Gene3D G3DSA:3.10.420.10 7 151 8.5E-51 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RMA_RS00590 134499859f1fa784d9fb21e8e0e50623 152 Pfam PF02556 Preprotein translocase subunit SecB 10 149 2.0E-47 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RMA_RS00590 134499859f1fa784d9fb21e8e0e50623 152 PANTHER PTHR36918:SF1 1 143 2.5E-35 T 22-04-2016 RMA_RS00590 134499859f1fa784d9fb21e8e0e50623 152 PANTHER PTHR36918 1 143 2.5E-35 T 22-04-2016 RMA_RS00590 134499859f1fa784d9fb21e8e0e50623 152 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 9 149 3.6E-64 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RMA_RS01690 30caadfbc3c9306f868354a312ecb744 449 SMART SM00228 95 166 3.7E-8 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS01690 30caadfbc3c9306f868354a312ecb744 449 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 48 371 3.6E-96 T 22-04-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 RMA_RS01690 30caadfbc3c9306f868354a312ecb744 449 Gene3D G3DSA:3.90.226.10 177 363 2.9E-65 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS01690 30caadfbc3c9306f868354a312ecb744 449 Gene3D G3DSA:3.90.226.10 411 441 2.9E-65 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS01690 30caadfbc3c9306f868354a312ecb744 449 SUPERFAMILY SSF52096 34 113 6.96E-77 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS01690 30caadfbc3c9306f868354a312ecb744 449 SUPERFAMILY SSF52096 187 365 6.96E-77 T 22-04-2016 IPR029045 ClpP/crotonase-like domain RMA_RS01690 30caadfbc3c9306f868354a312ecb744 449 SUPERFAMILY SSF50156 87 177 1.3E-12 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS01690 30caadfbc3c9306f868354a312ecb744 449 Pfam PF03572 Peptidase family S41 193 359 4.1E-57 T 22-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 RMA_RS01690 30caadfbc3c9306f868354a312ecb744 449 SMART SM00245 168 361 1.1E-89 T 22-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 RMA_RS01690 30caadfbc3c9306f868354a312ecb744 449 Gene3D G3DSA:2.30.42.10 101 176 1.0E-20 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS01690 30caadfbc3c9306f868354a312ecb744 449 PANTHER PTHR32060 39 432 1.1E-109 T 22-04-2016 RMA_RS01690 30caadfbc3c9306f868354a312ecb744 449 Gene3D G3DSA:3.30.750.44 48 100 2.4E-8 T 22-04-2016 RMA_RS01690 30caadfbc3c9306f868354a312ecb744 449 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 92 162 2.3E-6 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 Gene3D G3DSA:1.10.486.10 571 693 3.4E-8 T 22-04-2016 RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 SUPERFAMILY SSF52540 11 67 5.11E-102 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 SUPERFAMILY SSF52540 775 801 5.11E-102 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 SUPERFAMILY SSF52540 207 235 5.11E-102 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 SUPERFAMILY SSF52540 106 159 5.11E-102 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 SUPERFAMILY SSF52540 290 748 5.11E-102 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 Gene3D G3DSA:3.40.50.300 300 409 2.1E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 Gene3D G3DSA:3.40.50.300 114 176 2.1E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 Gene3D G3DSA:3.40.50.300 8 63 2.1E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 Pfam PF13361 UvrD-like helicase C-terminal domain 703 796 1.0E-16 T 22-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 407 9.2E-70 T 22-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 PANTHER PTHR11070 774 798 3.7E-80 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 PANTHER PTHR11070 265 477 3.7E-80 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 PANTHER PTHR11070 501 749 3.7E-80 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 PANTHER PTHR11070 105 196 3.7E-80 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 PANTHER PTHR11070 15 75 3.7E-80 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 Gene3D G3DSA:3.40.50.300 427 559 5.4E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06125 e49675642160cdf1a704fc7a987f02ab 822 Gene3D G3DSA:3.40.50.300 702 816 5.4E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04865 ea04e1a8508db961571df132e3cdadd8 175 Pfam PF04314 Protein of unknown function (DUF461) 50 157 1.8E-25 T 22-04-2016 IPR007410 DR1885-like metal-binding protein RMA_RS04865 ea04e1a8508db961571df132e3cdadd8 175 SUPERFAMILY SSF110087 46 169 3.27E-32 T 22-04-2016 IPR007410 DR1885-like metal-binding protein RMA_RS04865 ea04e1a8508db961571df132e3cdadd8 175 PANTHER PTHR36302 64 165 1.5E-19 T 22-04-2016 RMA_RS04865 ea04e1a8508db961571df132e3cdadd8 175 PANTHER PTHR36302:SF1 64 165 1.5E-19 T 22-04-2016 RMA_RS01960 0e65009053929d6c90884f41052e9655 93 Pfam PF01541 GIY-YIG catalytic domain 2 74 1.6E-13 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily RMA_RS01960 0e65009053929d6c90884f41052e9655 93 SUPERFAMILY SSF82771 5 87 1.31E-15 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily RMA_RS01960 0e65009053929d6c90884f41052e9655 93 PANTHER PTHR34477:SF2 2 91 6.1E-33 T 22-04-2016 RMA_RS01960 0e65009053929d6c90884f41052e9655 93 PANTHER PTHR34477 2 91 6.1E-33 T 22-04-2016 RMA_RS02520 2492070c20414173dd63214b4e93bb4a 341 Gene3D G3DSA:3.40.50.720 5 182 2.2E-37 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS02520 2492070c20414173dd63214b4e93bb4a 341 PANTHER PTHR10366 6 263 2.5E-161 T 22-04-2016 RMA_RS02520 2492070c20414173dd63214b4e93bb4a 341 PANTHER PTHR10366 282 334 2.5E-161 T 22-04-2016 RMA_RS02520 2492070c20414173dd63214b4e93bb4a 341 Pfam PF02719 Polysaccharide biosynthesis protein 7 285 1.5E-101 T 22-04-2016 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain RMA_RS02520 2492070c20414173dd63214b4e93bb4a 341 Gene3D G3DSA:3.90.25.10 183 264 3.2E-8 T 22-04-2016 RMA_RS02520 2492070c20414173dd63214b4e93bb4a 341 Pfam PF08485 Polysaccharide biosynthesis protein C-terminal 288 335 6.7E-24 T 22-04-2016 IPR013692 UDP-glucose 4-epimerase CapD, C-terminal domain GO:0003978|GO:0009103 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344 RMA_RS02520 2492070c20414173dd63214b4e93bb4a 341 PANTHER PTHR10366:SF360 6 263 2.5E-161 T 22-04-2016 RMA_RS02520 2492070c20414173dd63214b4e93bb4a 341 PANTHER PTHR10366:SF360 282 334 2.5E-161 T 22-04-2016 RMA_RS02520 2492070c20414173dd63214b4e93bb4a 341 SUPERFAMILY SSF51735 1 265 2.7E-50 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS00240 a6d198a0464576eb870b36c78c84b424 222 ProDom PD210227 COIL COILED RC0039 RP030 1 222 1.0E-107 T 22-04-2016 IPR020171 Uncharacterised protein family RC0039 RMA_RS05960 2b77120d7432c094c04f4e513112ebf3 391 PANTHER PTHR23502:SF19 3 373 1.7E-47 T 22-04-2016 RMA_RS05960 2b77120d7432c094c04f4e513112ebf3 391 SUPERFAMILY SSF103473 4 382 1.06E-56 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS05960 2b77120d7432c094c04f4e513112ebf3 391 Pfam PF07690 Major Facilitator Superfamily 8 345 3.2E-44 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RMA_RS05960 2b77120d7432c094c04f4e513112ebf3 391 PANTHER PTHR23502 3 373 1.7E-47 T 22-04-2016 RMA_RS05960 2b77120d7432c094c04f4e513112ebf3 391 Gene3D G3DSA:1.20.1250.20 202 373 2.1E-8 T 22-04-2016 RMA_RS05960 2b77120d7432c094c04f4e513112ebf3 391 Gene3D G3DSA:1.20.1250.20 5 181 3.4E-32 T 22-04-2016 RMA_RS04880 8ff2e53724bc95b7422609930d727d3e 170 SUPERFAMILY SSF46767 84 165 1.44E-29 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RMA_RS04880 8ff2e53724bc95b7422609930d727d3e 170 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 135 141 - T 22-04-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 RMA_RS04880 8ff2e53724bc95b7422609930d727d3e 170 SUPERFAMILY SSF53155 4 89 6.67E-12 T 22-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 RMA_RS04880 8ff2e53724bc95b7422609930d727d3e 170 Gene3D G3DSA:1.10.10.10 84 166 7.7E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RMA_RS04880 8ff2e53724bc95b7422609930d727d3e 170 PANTHER PTHR10815:SF5 1 164 1.5E-55 T 22-04-2016 RMA_RS04880 8ff2e53724bc95b7422609930d727d3e 170 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 86 164 1.1E-33 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RMA_RS04880 8ff2e53724bc95b7422609930d727d3e 170 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 86 165 8.9E-29 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RMA_RS04880 8ff2e53724bc95b7422609930d727d3e 170 PANTHER PTHR10815 1 164 1.5E-55 T 22-04-2016 RMA_RS03540 28a35e466d43fcd92a532786e399daa3 240 Gene3D G3DSA:3.40.50.300 3 233 1.1E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03540 28a35e466d43fcd92a532786e399daa3 240 PANTHER PTHR24220:SF497 5 237 3.5E-123 T 22-04-2016 RMA_RS03540 28a35e466d43fcd92a532786e399daa3 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS03540 28a35e466d43fcd92a532786e399daa3 240 PANTHER PTHR24220 5 237 3.5E-123 T 22-04-2016 RMA_RS03540 28a35e466d43fcd92a532786e399daa3 240 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 4 239 8.5E-114 T 22-04-2016 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 RMA_RS03540 28a35e466d43fcd92a532786e399daa3 240 SUPERFAMILY SSF52540 4 235 4.75E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03540 28a35e466d43fcd92a532786e399daa3 240 SMART SM00382 28 215 2.6E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS03540 28a35e466d43fcd92a532786e399daa3 240 Pfam PF00005 ABC transporter 19 164 6.3E-33 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS01610 a204043de9e9332f5152dfce1ccbb5a7 236 SUPERFAMILY SSF56104 11 234 2.35E-50 T 22-04-2016 RMA_RS01610 a204043de9e9332f5152dfce1ccbb5a7 236 Pfam PF01259 SAICAR synthetase 3 208 1.0E-33 T 22-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RMA_RS01610 a204043de9e9332f5152dfce1ccbb5a7 236 PANTHER PTHR11609:SF2 1 233 4.7E-54 T 22-04-2016 RMA_RS01610 a204043de9e9332f5152dfce1ccbb5a7 236 PANTHER PTHR11609 1 233 4.7E-54 T 22-04-2016 RMA_RS01610 a204043de9e9332f5152dfce1ccbb5a7 236 Gene3D G3DSA:3.30.470.20 89 212 2.1E-31 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RMA_RS01610 a204043de9e9332f5152dfce1ccbb5a7 236 Gene3D G3DSA:3.30.200.20 2 88 4.6E-22 T 22-04-2016 RMA_RS01610 a204043de9e9332f5152dfce1ccbb5a7 236 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 2 235 24.363 T 22-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RMA_RS00610 2f810994fae2fcc3cb3826430ef54b37 465 SUPERFAMILY SSF52467 295 464 6.0E-71 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RMA_RS00610 2f810994fae2fcc3cb3826430ef54b37 465 PANTHER PTHR10160 4 465 2.6E-212 T 22-04-2016 RMA_RS00610 2f810994fae2fcc3cb3826430ef54b37 465 Gene3D G3DSA:3.40.50.1220 294 463 6.4E-84 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RMA_RS00610 2f810994fae2fcc3cb3826430ef54b37 465 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 460 1.3E-181 T 22-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 RMA_RS00610 2f810994fae2fcc3cb3826430ef54b37 465 PANTHER PTHR10160:SF24 4 465 2.6E-212 T 22-04-2016 RMA_RS00610 2f810994fae2fcc3cb3826430ef54b37 465 PIRSF PIRSF000204 1 464 3.6E-218 T 22-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 RMA_RS02270 6807b6da141826b14f6d5b71cb4a4e91 414 Pfam PF03129 Anticodon binding domain 327 414 7.5E-8 T 22-04-2016 IPR004154 Anticodon-binding RMA_RS02270 6807b6da141826b14f6d5b71cb4a4e91 414 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 403 1.0E-134 T 22-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 RMA_RS02270 6807b6da141826b14f6d5b71cb4a4e91 414 SUPERFAMILY SSF55681 5 317 5.94E-89 T 22-04-2016 RMA_RS02270 6807b6da141826b14f6d5b71cb4a4e91 414 PIRSF PIRSF001549 1 414 2.8E-120 T 22-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RMA_RS02270 6807b6da141826b14f6d5b71cb4a4e91 414 Gene3D G3DSA:3.40.50.800 327 413 7.2E-13 T 22-04-2016 IPR004154 Anticodon-binding RMA_RS02270 6807b6da141826b14f6d5b71cb4a4e91 414 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 414 30.366 T 22-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 RMA_RS02270 6807b6da141826b14f6d5b71cb4a4e91 414 SUPERFAMILY SSF52954 327 414 1.96E-14 T 22-04-2016 IPR004154 Anticodon-binding RMA_RS02270 6807b6da141826b14f6d5b71cb4a4e91 414 PANTHER PTHR11476 1 414 2.8E-157 T 22-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RMA_RS02270 6807b6da141826b14f6d5b71cb4a4e91 414 Gene3D G3DSA:3.30.930.10 221 316 2.6E-83 T 22-04-2016 RMA_RS02270 6807b6da141826b14f6d5b71cb4a4e91 414 Gene3D G3DSA:3.30.930.10 4 185 2.6E-83 T 22-04-2016 RMA_RS02270 6807b6da141826b14f6d5b71cb4a4e91 414 PANTHER PTHR11476:SF9 1 414 2.8E-157 T 22-04-2016 RMA_RS02270 6807b6da141826b14f6d5b71cb4a4e91 414 Pfam PF13393 Histidyl-tRNA synthetase 10 313 9.6E-42 T 22-04-2016 RMA_RS06090 7bb385c9457f23b9c29724662c744e26 99 Pfam PF05071 NADH ubiquinone oxidoreductase subunit NDUFA12 15 99 1.2E-16 T 22-04-2016 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 RMA_RS06090 7bb385c9457f23b9c29724662c744e26 99 PANTHER PTHR12910:SF2 16 92 2.5E-15 T 22-04-2016 RMA_RS06090 7bb385c9457f23b9c29724662c744e26 99 PANTHER PTHR12910 16 92 2.5E-15 T 22-04-2016 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 RMA_RS05560 375f792716360e3e101f3d17c2c0b025 122 PANTHER PTHR11761:SF3 1 122 5.0E-67 T 22-04-2016 RMA_RS05560 375f792716360e3e101f3d17c2c0b025 122 PANTHER PTHR11761 1 122 5.0E-67 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RMA_RS05560 375f792716360e3e101f3d17c2c0b025 122 SUPERFAMILY SSF50193 1 122 3.92E-49 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RMA_RS05560 375f792716360e3e101f3d17c2c0b025 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 22-04-2016 IPR019972 Ribosomal protein L14P, conserved site RMA_RS05560 375f792716360e3e101f3d17c2c0b025 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.464 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RMA_RS05560 375f792716360e3e101f3d17c2c0b025 122 SMART SM01374 1 122 7.4E-80 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RMA_RS05560 375f792716360e3e101f3d17c2c0b025 122 Gene3D G3DSA:2.40.150.20 1 122 2.0E-52 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RMA_RS05560 375f792716360e3e101f3d17c2c0b025 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 7.4E-53 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RMA_RS05560 375f792716360e3e101f3d17c2c0b025 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 2.8E-57 T 22-04-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 RMA_RS05565 e15e2d0c3be3fd47ac3fc0262cf41984 77 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 4 74 1.1E-33 T 22-04-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05565 e15e2d0c3be3fd47ac3fc0262cf41984 77 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 1 77 22.389 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05565 e15e2d0c3be3fd47ac3fc0262cf41984 77 Pfam PF00366 Ribosomal protein S17 8 74 2.6E-29 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05565 e15e2d0c3be3fd47ac3fc0262cf41984 77 SUPERFAMILY SSF50249 3 75 5.57E-29 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS05565 e15e2d0c3be3fd47ac3fc0262cf41984 77 Gene3D G3DSA:2.40.50.140 3 75 6.4E-31 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS05565 e15e2d0c3be3fd47ac3fc0262cf41984 77 PANTHER PTHR10744 1 74 1.4E-31 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05565 e15e2d0c3be3fd47ac3fc0262cf41984 77 ProSitePatterns PS00056 Ribosomal protein S17 signature. 54 66 - T 22-04-2016 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05565 e15e2d0c3be3fd47ac3fc0262cf41984 77 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 1 74 4.0E-35 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05565 e15e2d0c3be3fd47ac3fc0262cf41984 77 PRINTS PR00973 Ribosomal protein S17 family signature 54 64 1.0E-12 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05565 e15e2d0c3be3fd47ac3fc0262cf41984 77 PRINTS PR00973 Ribosomal protein S17 family signature 22 45 1.0E-12 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05565 e15e2d0c3be3fd47ac3fc0262cf41984 77 PRINTS PR00973 Ribosomal protein S17 family signature 64 71 1.0E-12 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS07185 e0e27ef5700b6630fd6ebbc794143304 247 PANTHER PTHR30417:SF5 1 247 2.5E-82 T 22-04-2016 RMA_RS07185 e0e27ef5700b6630fd6ebbc794143304 247 SUPERFAMILY SSF47090 177 244 6.47E-19 T 22-04-2016 IPR002477 Peptidoglycan binding-like RMA_RS07185 e0e27ef5700b6630fd6ebbc794143304 247 SUPERFAMILY SSF55846 7 165 1.83E-51 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RMA_RS07185 e0e27ef5700b6630fd6ebbc794143304 247 Gene3D G3DSA:3.40.80.10 3 168 2.7E-58 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RMA_RS07185 e0e27ef5700b6630fd6ebbc794143304 247 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 16 150 4.5E-22 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RMA_RS07185 e0e27ef5700b6630fd6ebbc794143304 247 Pfam PF01471 Putative peptidoglycan binding domain 181 235 3.7E-7 T 22-04-2016 IPR002477 Peptidoglycan binding-like RMA_RS07185 e0e27ef5700b6630fd6ebbc794143304 247 PANTHER PTHR30417 1 247 2.5E-82 T 22-04-2016 RMA_RS07185 e0e27ef5700b6630fd6ebbc794143304 247 SMART SM00644 6 149 3.8E-24 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RMA_RS02250 2000281024841db9b040e1d0374a7bdb 188 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 27 174 1.1E-55 T 22-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RMA_RS02250 2000281024841db9b040e1d0374a7bdb 188 Gene3D G3DSA:2.60.370.10 53 179 1.3E-51 T 22-04-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain RMA_RS02250 2000281024841db9b040e1d0374a7bdb 188 PANTHER PTHR21320 3 181 4.7E-67 T 22-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RMA_RS02250 2000281024841db9b040e1d0374a7bdb 188 PANTHER PTHR21320:SF3 3 181 4.7E-67 T 22-04-2016 RMA_RS02250 2000281024841db9b040e1d0374a7bdb 188 Hamap MF_00155 Cytochrome c oxidase assembly protein CtaG [ctaG]. 1 180 38.802 T 22-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RMA_RS02250 2000281024841db9b040e1d0374a7bdb 188 SUPERFAMILY SSF110111 53 176 1.02E-47 T 22-04-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain RMA_RS02250 2000281024841db9b040e1d0374a7bdb 188 PIRSF PIRSF005413 1 185 7.5E-72 T 22-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RMA_RS06835 e6ca88252cc63d84b55e2711fd0e20fd 71 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 1.1E-25 T 22-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 RMA_RS06835 e6ca88252cc63d84b55e2711fd0e20fd 71 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 71 24.008 T 22-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RMA_RS06835 e6ca88252cc63d84b55e2711fd0e20fd 71 PANTHER PTHR33370 1 71 1.9E-39 T 22-04-2016 RMA_RS06835 e6ca88252cc63d84b55e2711fd0e20fd 71 Gene3D G3DSA:2.40.50.140 1 71 8.4E-36 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS06835 e6ca88252cc63d84b55e2711fd0e20fd 71 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 1.2E-32 T 22-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RMA_RS06835 e6ca88252cc63d84b55e2711fd0e20fd 71 SUPERFAMILY SSF50249 1 71 2.86E-26 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS04945 0ecc7ac7264bc8d41945f4cb479245fb 131 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 88 8.0E-39 T 22-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RMA_RS04945 0ecc7ac7264bc8d41945f4cb479245fb 131 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 3 124 1.2E-26 T 22-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RMA_RS04945 0ecc7ac7264bc8d41945f4cb479245fb 131 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 124 25.682 T 22-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RMA_RS04945 0ecc7ac7264bc8d41945f4cb479245fb 131 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 125 5.1E-33 T 22-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RMA_RS04945 0ecc7ac7264bc8d41945f4cb479245fb 131 SUPERFAMILY SSF56214 1 123 2.62E-28 T 22-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RMA_RS04945 0ecc7ac7264bc8d41945f4cb479245fb 131 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 117 2.8E-20 T 22-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RMA_RS04945 0ecc7ac7264bc8d41945f4cb479245fb 131 Gene3D G3DSA:3.90.470.20 1 124 1.4E-34 T 22-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RMA_RS06095 6f6db9b1c287ffd567ed521017d0905b 155 Gene3D G3DSA:3.30.420.10 6 145 8.9E-56 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS06095 6f6db9b1c287ffd567ed521017d0905b 155 Hamap MF_00042 Ribonuclease H [rnhA]. 5 153 29.409 T 22-04-2016 IPR022892 Ribonuclease H GO:0004523 RMA_RS06095 6f6db9b1c287ffd567ed521017d0905b 155 SUPERFAMILY SSF53098 7 145 2.53E-53 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS06095 6f6db9b1c287ffd567ed521017d0905b 155 Pfam PF00075 RNase H 7 144 8.3E-49 T 22-04-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 RMA_RS06095 6f6db9b1c287ffd567ed521017d0905b 155 PANTHER PTHR10642 1 145 3.7E-54 T 22-04-2016 RMA_RS06215 2be98ead167e4f4704e718749c243337 299 PANTHER PTHR22777 60 295 3.9E-66 T 22-04-2016 RMA_RS06215 2be98ead167e4f4704e718749c243337 299 Gene3D G3DSA:3.10.580.10 62 190 7.2E-16 T 22-04-2016 RMA_RS06215 2be98ead167e4f4704e718749c243337 299 SUPERFAMILY SSF54631 64 199 2.15E-26 T 22-04-2016 RMA_RS06215 2be98ead167e4f4704e718749c243337 299 SMART SM01091 213 294 2.7E-12 T 22-04-2016 IPR005170 Transporter-associated domain RMA_RS06215 2be98ead167e4f4704e718749c243337 299 Pfam PF00571 CBS domain 150 196 5.1E-7 T 22-04-2016 IPR000644 CBS domain RMA_RS06215 2be98ead167e4f4704e718749c243337 299 Pfam PF03471 Transporter associated domain 215 293 8.8E-13 T 22-04-2016 IPR005170 Transporter-associated domain RMA_RS06215 2be98ead167e4f4704e718749c243337 299 SUPERFAMILY SSF56176 210 291 1.39E-12 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RMA_RS06215 2be98ead167e4f4704e718749c243337 299 Gene3D G3DSA:3.30.465.10 191 292 6.1E-20 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RMA_RS06715 bbd63a1a035b4dec4d3eae132ffbad1e 449 PANTHER PTHR11918 1 445 6.3E-180 T 22-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RMA_RS06715 bbd63a1a035b4dec4d3eae132ffbad1e 449 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 156 176 - T 22-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RMA_RS06715 bbd63a1a035b4dec4d3eae132ffbad1e 449 Pfam PF01938 TRAM domain 384 445 2.3E-13 T 22-04-2016 IPR002792 TRAM domain RMA_RS06715 bbd63a1a035b4dec4d3eae132ffbad1e 449 Pfam PF00919 Uncharacterized protein family UPF0004 4 108 1.6E-28 T 22-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 RMA_RS06715 bbd63a1a035b4dec4d3eae132ffbad1e 449 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 442 1.5E-158 T 22-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 RMA_RS06715 bbd63a1a035b4dec4d3eae132ffbad1e 449 SUPERFAMILY SSF102114 107 378 1.44E-58 T 22-04-2016 RMA_RS06715 bbd63a1a035b4dec4d3eae132ffbad1e 449 Pfam PF04055 Radical SAM superfamily 156 330 2.7E-28 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RMA_RS06715 bbd63a1a035b4dec4d3eae132ffbad1e 449 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 446 70.267 T 22-04-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 RMA_RS06715 bbd63a1a035b4dec4d3eae132ffbad1e 449 PANTHER PTHR11918:SF43 1 445 6.3E-180 T 22-04-2016 RMA_RS06715 bbd63a1a035b4dec4d3eae132ffbad1e 449 Gene3D G3DSA:3.80.30.20 151 383 8.4E-73 T 22-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RMA_RS06715 bbd63a1a035b4dec4d3eae132ffbad1e 449 SMART SM00729 152 372 1.3E-53 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RMA_RS06715 bbd63a1a035b4dec4d3eae132ffbad1e 449 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 444 6.6E-155 T 22-04-2016 RMA_RS06580 1fa235600bca6a3634d69f86f5168fe3 237 Gene3D G3DSA:2.40.160.20 22 234 8.0E-18 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RMA_RS06580 1fa235600bca6a3634d69f86f5168fe3 237 ProDom PD052653 PRECURSOR RP787 SIGNAL 23 54 3.0E-10 T 22-04-2016 RMA_RS06580 1fa235600bca6a3634d69f86f5168fe3 237 SUPERFAMILY SSF56925 22 234 1.26E-17 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RMA_RS06580 1fa235600bca6a3634d69f86f5168fe3 237 Pfam PF13505 Outer membrane protein beta-barrel domain 19 212 2.6E-7 T 22-04-2016 IPR027385 Outer membrane protein beta-barrel RMA_RS03270 20eb9dd98baeba6ad31aacd722bd7a62 84 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 6 48 3.1E-16 T 22-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RMA_RS03270 20eb9dd98baeba6ad31aacd722bd7a62 84 SUPERFAMILY SSF89447 4 41 2.96E-9 T 22-04-2016 RMA_RS03270 20eb9dd98baeba6ad31aacd722bd7a62 84 SMART SM00966 7 53 8.7E-10 T 22-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RMA_RS03270 20eb9dd98baeba6ad31aacd722bd7a62 84 Gene3D G3DSA:2.10.260.10 7 40 1.1E-8 T 22-04-2016 RMA_RS01330 3cd6e4c1b82dd93b698aba7348e0c75e 120 Pfam PF04956 TrbC/VIRB2 family 16 108 5.4E-18 T 22-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 RMA_RS06475 1661194195943a98e1bd464a83ea29aa 317 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 228 317 3.2E-34 T 22-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RMA_RS06475 1661194195943a98e1bd464a83ea29aa 317 PANTHER PTHR34069:SF2 1 317 2.4E-121 T 22-04-2016 RMA_RS06475 1661194195943a98e1bd464a83ea29aa 317 Gene3D G3DSA:3.40.47.10 1 160 1.7E-65 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RMA_RS06475 1661194195943a98e1bd464a83ea29aa 317 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 184 2.4E-31 T 22-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RMA_RS06475 1661194195943a98e1bd464a83ea29aa 317 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 317 67.558 T 22-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RMA_RS06475 1661194195943a98e1bd464a83ea29aa 317 PANTHER PTHR34069 1 317 2.4E-121 T 22-04-2016 RMA_RS06475 1661194195943a98e1bd464a83ea29aa 317 Gene3D G3DSA:3.40.47.10 161 317 2.0E-49 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RMA_RS06475 1661194195943a98e1bd464a83ea29aa 317 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 317 8.5E-142 T 22-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RMA_RS06475 1661194195943a98e1bd464a83ea29aa 317 SUPERFAMILY SSF53901 4 317 6.07E-66 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RMA_RS07090 781b01e5e3edf16aa7889174ee865987 261 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 82 255 2.9E-74 T 22-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain RMA_RS07090 781b01e5e3edf16aa7889174ee865987 261 PANTHER PTHR33693 61 259 2.1E-62 T 22-04-2016 RMA_RS07090 781b01e5e3edf16aa7889174ee865987 261 SMART SM00987 95 248 3.4E-39 T 22-04-2016 RMA_RS07090 781b01e5e3edf16aa7889174ee865987 261 Pfam PF03167 Uracil DNA glycosylase superfamily 95 247 9.5E-41 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RMA_RS07090 781b01e5e3edf16aa7889174ee865987 261 PANTHER PTHR33693:SF1 61 259 2.1E-62 T 22-04-2016 RMA_RS07090 781b01e5e3edf16aa7889174ee865987 261 SMART SM00986 95 248 3.4E-39 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RMA_RS07090 781b01e5e3edf16aa7889174ee865987 261 Gene3D G3DSA:3.40.470.10 70 254 3.6E-61 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RMA_RS07090 781b01e5e3edf16aa7889174ee865987 261 SUPERFAMILY SSF52141 66 254 1.77E-56 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like RMA_RS04600 6783b08143618a79f93db7686e7dc48a 161 Gene3D G3DSA:2.30.30.180 89 149 1.8E-11 T 22-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal RMA_RS04600 6783b08143618a79f93db7686e7dc48a 161 Pfam PF02576 Putative ribosome maturation factor RimP 12 148 7.3E-37 T 22-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 RMA_RS04600 6783b08143618a79f93db7686e7dc48a 161 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 152 20.443 T 22-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 RMA_RS04600 6783b08143618a79f93db7686e7dc48a 161 SUPERFAMILY SSF74942 85 152 9.15E-15 T 22-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal RMA_RS04600 6783b08143618a79f93db7686e7dc48a 161 PANTHER PTHR33867 1 150 8.3E-34 T 22-04-2016 RMA_RS04600 6783b08143618a79f93db7686e7dc48a 161 PANTHER PTHR33867:SF1 1 150 8.3E-34 T 22-04-2016 RMA_RS04600 6783b08143618a79f93db7686e7dc48a 161 SUPERFAMILY SSF75420 2 84 2.48E-17 T 22-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal RMA_RS04600 6783b08143618a79f93db7686e7dc48a 161 Gene3D G3DSA:3.30.300.70 1 80 4.3E-21 T 22-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal RMA_RS03030 390d5d1a8e79ea84425d9c9fb44951bf 315 SUPERFAMILY SSF52317 28 175 8.7E-27 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like RMA_RS03030 390d5d1a8e79ea84425d9c9fb44951bf 315 Gene3D G3DSA:3.50.30.60 191 304 5.1E-33 T 22-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain RMA_RS03030 390d5d1a8e79ea84425d9c9fb44951bf 315 PIRSF PIRSF028757 23 313 8.5E-90 T 22-04-2016 IPR003507 Peptidase family S66 RMA_RS03030 390d5d1a8e79ea84425d9c9fb44951bf 315 PANTHER PTHR30237 30 297 5.4E-42 T 22-04-2016 RMA_RS03030 390d5d1a8e79ea84425d9c9fb44951bf 315 SUPERFAMILY SSF141986 184 303 1.1E-31 T 22-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain RMA_RS03030 390d5d1a8e79ea84425d9c9fb44951bf 315 Gene3D G3DSA:3.40.50.10740 30 176 4.8E-29 T 22-04-2016 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal domain RMA_RS03030 390d5d1a8e79ea84425d9c9fb44951bf 315 Pfam PF02016 LD-carboxypeptidase 30 301 1.0E-58 T 22-04-2016 IPR003507 Peptidase family S66 RMA_RS03030 390d5d1a8e79ea84425d9c9fb44951bf 315 PANTHER PTHR30237:SF2 30 297 5.4E-42 T 22-04-2016 RMA_RS03150 6f833e2d24656e150e67303bed020e41 35 Gene3D G3DSA:1.20.1600.10 3 35 8.6E-5 T 22-04-2016 RMA_RS03090 8b1f554a3c9b5870f3c6a8953382d86b 377 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 18 363 5.7E-109 T 22-04-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 RMA_RS03090 8b1f554a3c9b5870f3c6a8953382d86b 377 Pfam PF01098 Cell cycle protein 21 364 3.4E-74 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RMA_RS03090 8b1f554a3c9b5870f3c6a8953382d86b 377 PANTHER PTHR30474 1 364 9.0E-98 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RMA_RS03090 8b1f554a3c9b5870f3c6a8953382d86b 377 PANTHER PTHR30474:SF2 1 364 9.0E-98 T 22-04-2016 RMA_RS07135 fa3851dff9a9614fcc103fd29bd17503 135 SUPERFAMILY SSF88723 1 133 1.32E-25 T 22-04-2016 IPR029060 PIN domain-like RMA_RS07135 fa3851dff9a9614fcc103fd29bd17503 135 Gene3D G3DSA:3.40.50.1010 1 125 2.1E-18 T 22-04-2016 IPR029060 PIN domain-like RMA_RS07135 fa3851dff9a9614fcc103fd29bd17503 135 PANTHER PTHR33653 1 135 3.5E-22 T 22-04-2016 RMA_RS07135 fa3851dff9a9614fcc103fd29bd17503 135 PANTHER PTHR33653:SF1 1 135 3.5E-22 T 22-04-2016 RMA_RS07135 fa3851dff9a9614fcc103fd29bd17503 135 Pfam PF01850 PIN domain 3 121 6.7E-15 T 22-04-2016 IPR002716 PIN domain RMA_RS06460 7bcd8b5ae139f997d567cb31d51ca7a0 362 Pfam PF03739 Predicted permease YjgP/YjgQ family 9 357 1.7E-46 T 22-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 RMA_RS06460 7bcd8b5ae139f997d567cb31d51ca7a0 362 PANTHER PTHR33529 1 361 1.0E-30 T 22-04-2016 RMA_RS06460 7bcd8b5ae139f997d567cb31d51ca7a0 362 PANTHER PTHR33529:SF1 1 361 1.0E-30 T 22-04-2016 RMA_RS00380 b3507a3d6d0f9c31e30f774211995297 171 SUPERFAMILY SSF55653 57 148 7.06E-23 T 22-04-2016 IPR020069 Ribosomal protein L9, C-terminal RMA_RS00380 b3507a3d6d0f9c31e30f774211995297 171 Gene3D G3DSA:3.40.5.10 1 51 4.4E-20 T 22-04-2016 IPR020070 Ribosomal protein L9, N-terminal RMA_RS00380 b3507a3d6d0f9c31e30f774211995297 171 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 22-04-2016 IPR020070 Ribosomal protein L9, N-terminal RMA_RS00380 b3507a3d6d0f9c31e30f774211995297 171 Gene3D G3DSA:3.10.430.100 61 147 2.3E-22 T 22-04-2016 IPR020069 Ribosomal protein L9, C-terminal RMA_RS00380 b3507a3d6d0f9c31e30f774211995297 171 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 146 2.0E-33 T 22-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00380 b3507a3d6d0f9c31e30f774211995297 171 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 146 2.3E-21 T 22-04-2016 IPR020069 Ribosomal protein L9, C-terminal RMA_RS00380 b3507a3d6d0f9c31e30f774211995297 171 PANTHER PTHR21368 1 164 3.9E-39 T 22-04-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00380 b3507a3d6d0f9c31e30f774211995297 171 SUPERFAMILY SSF55658 1 57 1.53E-15 T 22-04-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal RMA_RS00380 b3507a3d6d0f9c31e30f774211995297 171 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 22.86 T 22-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00380 b3507a3d6d0f9c31e30f774211995297 171 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 45 3.4E-19 T 22-04-2016 IPR020070 Ribosomal protein L9, N-terminal RMA_RS01575 cf653cbf1c1270d948eb584654337eec 90 Pfam PF10877 Protein of unknown function (DUF2671) 1 90 1.1E-59 T 22-04-2016 IPR022715 Protein of unknown function DUF2671 RMA_RS01575 cf653cbf1c1270d948eb584654337eec 90 ProDom PD197819 RP215 1 89 1.0E-45 T 22-04-2016 IPR022715 Protein of unknown function DUF2671 RMA_RS04775 0e3c35452b8682e7d73b25ab9d877ab9 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 326 341 6.71E-16 T 22-04-2016 RMA_RS04775 0e3c35452b8682e7d73b25ab9d877ab9 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 202 217 6.71E-16 T 22-04-2016 RMA_RS04775 0e3c35452b8682e7d73b25ab9d877ab9 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 341 357 6.71E-16 T 22-04-2016 RMA_RS04775 0e3c35452b8682e7d73b25ab9d877ab9 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 57 79 6.71E-16 T 22-04-2016 RMA_RS04775 0e3c35452b8682e7d73b25ab9d877ab9 428 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 58 426 2.2E-108 T 22-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 RMA_RS04775 0e3c35452b8682e7d73b25ab9d877ab9 428 SUPERFAMILY SSF51905 313 420 8.26E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS04775 0e3c35452b8682e7d73b25ab9d877ab9 428 SUPERFAMILY SSF51905 58 223 8.26E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS04775 0e3c35452b8682e7d73b25ab9d877ab9 428 PANTHER PTHR13789 59 428 7.0E-98 T 22-04-2016 RMA_RS04775 0e3c35452b8682e7d73b25ab9d877ab9 428 PANTHER PTHR13789:SF240 59 428 7.0E-98 T 22-04-2016 RMA_RS04775 0e3c35452b8682e7d73b25ab9d877ab9 428 Gene3D G3DSA:3.50.50.60 314 392 5.0E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS04775 0e3c35452b8682e7d73b25ab9d877ab9 428 Gene3D G3DSA:3.50.50.60 59 228 5.0E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RMA_RS04775 0e3c35452b8682e7d73b25ab9d877ab9 428 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 57 426 2.2E-131 T 22-04-2016 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 KEGG: 00130+1.14.13.-|KEGG: 00140+1.14.13.-|KEGG: 00232+1.14.13.-|KEGG: 00261+1.14.13.-|KEGG: 00340+1.14.13.-|KEGG: 00360+1.14.13.-|KEGG: 00361+1.14.13.-|KEGG: 00362+1.14.13.-|KEGG: 00363+1.14.13.-|KEGG: 00380+1.14.13.-|KEGG: 00403+1.14.13.-|KEGG: 00590+1.14.13.-|KEGG: 00591+1.14.13.-|KEGG: 00622+1.14.13.-|KEGG: 00623+1.14.13.-|KEGG: 00624+1.14.13.-|KEGG: 00625+1.14.13.-|KEGG: 00626+1.14.13.-|KEGG: 00627+1.14.13.-|KEGG: 00640+1.14.13.-|KEGG: 00643+1.14.13.-|KEGG: 00830+1.14.13.-|KEGG: 00903+1.14.13.-|KEGG: 00904+1.14.13.-|KEGG: 00905+1.14.13.-|KEGG: 00906+1.14.13.-|KEGG: 00930+1.14.13.-|KEGG: 00940+1.14.13.-|KEGG: 00941+1.14.13.-|KEGG: 00943+1.14.13.-|KEGG: 00945+1.14.13.-|KEGG: 00950+1.14.13.-|KEGG: 00966+1.14.13.-|KEGG: 00980+1.14.13.-|KEGG: 00982+1.14.13.-|KEGG: 00983+1.14.13.-|UniPathway: UPA00232 RMA_RS04775 0e3c35452b8682e7d73b25ab9d877ab9 428 Pfam PF01494 FAD binding domain 58 357 1.6E-19 T 22-04-2016 IPR002938 FAD-binding domain GO:0071949 RMA_RS04775 0e3c35452b8682e7d73b25ab9d877ab9 428 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 340 353 - T 22-04-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 UniPathway: UPA00232 RMA_RS04775 0e3c35452b8682e7d73b25ab9d877ab9 428 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 8 56 6.4E-26 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS01570 88135fc0becee6d5db5dd52045ff954a 589 Gene3D G3DSA:3.40.50.300 346 578 7.7E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01570 88135fc0becee6d5db5dd52045ff954a 589 Pfam PF00005 ABC transporter 368 513 1.4E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS01570 88135fc0becee6d5db5dd52045ff954a 589 SUPERFAMILY SSF90123 18 320 2.09E-34 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RMA_RS01570 88135fc0becee6d5db5dd52045ff954a 589 Pfam PF00664 ABC transporter transmembrane region 27 295 2.8E-12 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RMA_RS01570 88135fc0becee6d5db5dd52045ff954a 589 PANTHER PTHR24221 16 583 2.9E-152 T 22-04-2016 RMA_RS01570 88135fc0becee6d5db5dd52045ff954a 589 SUPERFAMILY SSF52540 339 583 4.0E-87 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS01570 88135fc0becee6d5db5dd52045ff954a 589 Gene3D G3DSA:1.20.1560.10 18 325 7.0E-25 T 22-04-2016 RMA_RS01570 88135fc0becee6d5db5dd52045ff954a 589 ProSitePatterns PS00211 ABC transporters family signature. 485 499 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS01570 88135fc0becee6d5db5dd52045ff954a 589 SMART SM00382 373 559 9.7E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS00390 d9e5f94e39a238666b70be4c27c44632 637 Gene3D G3DSA:1.10.8.60 333 399 2.8E-24 T 22-04-2016 RMA_RS00390 d9e5f94e39a238666b70be4c27c44632 637 Pfam PF01434 Peptidase family M41 385 592 3.5E-74 T 22-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 RMA_RS00390 d9e5f94e39a238666b70be4c27c44632 637 SUPERFAMILY SSF140990 406 598 1.28E-68 T 22-04-2016 RMA_RS00390 d9e5f94e39a238666b70be4c27c44632 637 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 192 322 5.4E-45 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RMA_RS00390 d9e5f94e39a238666b70be4c27c44632 637 ProSitePatterns PS00674 AAA-protein family signature. 294 312 - T 22-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 RMA_RS00390 d9e5f94e39a238666b70be4c27c44632 637 SUPERFAMILY SSF52540 146 394 1.4E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00390 d9e5f94e39a238666b70be4c27c44632 637 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 605 35.983 T 22-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 RMA_RS00390 d9e5f94e39a238666b70be4c27c44632 637 Pfam PF06480 FtsH Extracellular 8 93 4.0E-10 T 22-04-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 RMA_RS00390 d9e5f94e39a238666b70be4c27c44632 637 PANTHER PTHR23076 8 603 0.0 T 22-04-2016 RMA_RS00390 d9e5f94e39a238666b70be4c27c44632 637 SMART SM00382 187 326 3.1E-23 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS00390 d9e5f94e39a238666b70be4c27c44632 637 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 104 593 1.1E-236 T 22-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 RMA_RS00390 d9e5f94e39a238666b70be4c27c44632 637 Gene3D G3DSA:3.40.50.300 148 332 8.9E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00615 c88de7324cd47473432a71845a4e298e 244 Gene3D G3DSA:2.40.160.20 44 244 2.8E-26 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RMA_RS00615 c88de7324cd47473432a71845a4e298e 244 SUPERFAMILY SSF56925 81 244 4.19E-11 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RMA_RS00615 c88de7324cd47473432a71845a4e298e 244 PANTHER PTHR36920 137 244 4.3E-13 T 22-04-2016 RMA_RS00615 c88de7324cd47473432a71845a4e298e 244 PANTHER PTHR36920:SF1 137 244 4.3E-13 T 22-04-2016 RMA_RS00615 c88de7324cd47473432a71845a4e298e 244 Pfam PF03922 OmpW family 44 244 3.3E-54 T 22-04-2016 IPR005618 Outer membrane protein, OmpW GO:0019867 RMA_RS00040 10e2afa105a4b066dc31ff16b1186a7d 145 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 3 141 2.7E-55 T 22-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RMA_RS00040 10e2afa105a4b066dc31ff16b1186a7d 145 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 3 143 34.086 T 22-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RMA_RS00040 10e2afa105a4b066dc31ff16b1186a7d 145 Pfam PF07977 FabA-like domain 12 135 5.9E-35 T 22-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RMA_RS00040 10e2afa105a4b066dc31ff16b1186a7d 145 PANTHER PTHR30272 2 145 1.1E-67 T 22-04-2016 RMA_RS00040 10e2afa105a4b066dc31ff16b1186a7d 145 Gene3D G3DSA:3.10.129.10 2 143 2.1E-55 T 22-04-2016 IPR029069 HotDog domain RMA_RS00040 10e2afa105a4b066dc31ff16b1186a7d 145 SUPERFAMILY SSF54637 2 141 1.83E-47 T 22-04-2016 IPR029069 HotDog domain RMA_RS05690 71c041c769a95fae86bf80a789426947 410 SUPERFAMILY SSF52540 65 348 3.24E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05690 71c041c769a95fae86bf80a789426947 410 Pfam PF00270 DEAD/DEAH box helicase 23 183 1.9E-46 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RMA_RS05690 71c041c769a95fae86bf80a789426947 410 Gene3D G3DSA:3.40.50.300 2 202 1.6E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05690 71c041c769a95fae86bf80a789426947 410 Gene3D G3DSA:3.40.50.300 203 362 8.8E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05690 71c041c769a95fae86bf80a789426947 410 SMART SM00487 18 213 6.9E-58 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RMA_RS05690 71c041c769a95fae86bf80a789426947 410 PANTHER PTHR24031:SF261 2 355 9.1E-164 T 22-04-2016 RMA_RS05690 71c041c769a95fae86bf80a789426947 410 PANTHER PTHR24031 2 355 9.1E-164 T 22-04-2016 RMA_RS05690 71c041c769a95fae86bf80a789426947 410 Pfam PF00271 Helicase conserved C-terminal domain 223 329 2.7E-29 T 22-04-2016 IPR001650 Helicase, C-terminal RMA_RS05690 71c041c769a95fae86bf80a789426947 410 SMART SM00490 248 329 1.5E-34 T 22-04-2016 IPR001650 Helicase, C-terminal RMA_RS01950 7bbb2daa2da1dc2e748dcc1fe90e6765 175 PANTHER PTHR10134 4 175 5.2E-78 T 22-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 RMA_RS01950 7bbb2daa2da1dc2e748dcc1fe90e6765 175 SUPERFAMILY SSF50022 32 172 4.58E-42 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RMA_RS01950 7bbb2daa2da1dc2e748dcc1fe90e6765 175 Pfam PF00355 Rieske [2Fe-2S] domain 58 162 5.7E-13 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RMA_RS01950 7bbb2daa2da1dc2e748dcc1fe90e6765 175 PRINTS PR00162 Rieske 2Fe-2S subunit signature 113 124 3.3E-17 T 22-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RMA_RS01950 7bbb2daa2da1dc2e748dcc1fe90e6765 175 PRINTS PR00162 Rieske 2Fe-2S subunit signature 135 147 3.3E-17 T 22-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RMA_RS01950 7bbb2daa2da1dc2e748dcc1fe90e6765 175 PRINTS PR00162 Rieske 2Fe-2S subunit signature 147 159 3.3E-17 T 22-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RMA_RS01950 7bbb2daa2da1dc2e748dcc1fe90e6765 175 PANTHER PTHR10134:SF1 4 175 5.2E-78 T 22-04-2016 RMA_RS01950 7bbb2daa2da1dc2e748dcc1fe90e6765 175 Gene3D G3DSA:1.20.5.510 4 42 1.8E-16 T 22-04-2016 RMA_RS01950 7bbb2daa2da1dc2e748dcc1fe90e6765 175 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 10 34 4.8E-4 T 22-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RMA_RS01950 7bbb2daa2da1dc2e748dcc1fe90e6765 175 Gene3D G3DSA:2.102.10.10 50 172 7.2E-39 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RMA_RS01950 7bbb2daa2da1dc2e748dcc1fe90e6765 175 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 11 175 1.4E-70 T 22-04-2016 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RMA_RS01950 7bbb2daa2da1dc2e748dcc1fe90e6765 175 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 4 42 1.3E-17 T 22-04-2016 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 Gene3D G3DSA:3.40.50.300 251 338 1.2E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 Gene3D G3DSA:3.40.50.300 16 121 1.2E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 PANTHER PTHR11262:SF3 223 450 4.8E-187 T 22-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 PANTHER PTHR11262:SF3 15 116 4.8E-187 T 22-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 PANTHER PTHR11262 223 450 4.8E-187 T 22-04-2016 RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 PANTHER PTHR11262 15 116 4.8E-187 T 22-04-2016 RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 12 450 41.117 T 22-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 15 450 1.3E-174 T 22-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 Gene3D G3DSA:1.10.8.60 341 450 2.3E-33 T 22-04-2016 RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 Gene3D G3DSA:1.10.8.10 125 177 8.2E-24 T 22-04-2016 RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 Gene3D G3DSA:1.10.8.10 218 248 8.2E-24 T 22-04-2016 RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 Pfam PF07728 AAA domain (dynein-related subfamily) 63 99 3.3E-5 T 22-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 SMART SM00382 60 339 6.9E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 SMART SM01086 342 438 4.0E-17 T 22-04-2016 IPR019489 Clp ATPase, C-terminal RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 Pfam PF07724 AAA domain (Cdc48 subfamily) 173 336 2.4E-39 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RMA_RS02365 d8a5c7769fadc229bdb607b118343519 450 SUPERFAMILY SSF52540 16 445 6.29E-80 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03890 5a91a0b6d57d2b6f8ac72a1ba3a51846 140 TIGRFAM TIGR02742 TrbC_Ftype: type-F conjugative transfer system pilin assembly protein TrbC 41 137 3.9E-21 T 22-04-2016 IPR014113 Type-F conjugative transfer system pilin assembly protein TrbC, subgroup RMA_RS03890 5a91a0b6d57d2b6f8ac72a1ba3a51846 140 Pfam PF09673 Type-F conjugative transfer system pilin assembly protein 43 118 6.1E-19 T 22-04-2016 IPR019106 Type-F conjugative transfer system pilin assembly protein TrbC RMA_RS03890 5a91a0b6d57d2b6f8ac72a1ba3a51846 140 SUPERFAMILY SSF52833 26 135 1.88E-6 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS03890 5a91a0b6d57d2b6f8ac72a1ba3a51846 140 Gene3D G3DSA:3.40.30.10 79 137 2.5E-7 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS01240 760bc28239819b6102e0c7d68860fe67 104 Pfam PF03091 CutA1 divalent ion tolerance protein 5 101 1.3E-29 T 22-04-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 RMA_RS01240 760bc28239819b6102e0c7d68860fe67 104 SUPERFAMILY SSF54913 2 102 6.3E-33 T 22-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta RMA_RS01240 760bc28239819b6102e0c7d68860fe67 104 PANTHER PTHR23419 6 102 4.7E-21 T 22-04-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 RMA_RS01240 760bc28239819b6102e0c7d68860fe67 104 Gene3D G3DSA:3.30.70.830 2 102 1.2E-34 T 22-04-2016 RMA_RS01240 760bc28239819b6102e0c7d68860fe67 104 PANTHER PTHR23419:SF0 6 102 4.7E-21 T 22-04-2016 RMA_RS02360 d7f4d18eaae50459601cc7ea0a600c47 182 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 9 181 39.694 T 22-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RMA_RS02360 d7f4d18eaae50459601cc7ea0a600c47 182 Pfam PF00227 Proteasome subunit 8 179 2.8E-26 T 22-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 RMA_RS02360 d7f4d18eaae50459601cc7ea0a600c47 182 PIRSF PIRSF039093 3 182 4.1E-78 T 22-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RMA_RS02360 d7f4d18eaae50459601cc7ea0a600c47 182 SUPERFAMILY SSF56235 7 180 1.42E-56 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RMA_RS02360 d7f4d18eaae50459601cc7ea0a600c47 182 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 10 180 8.3E-78 T 22-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RMA_RS02360 d7f4d18eaae50459601cc7ea0a600c47 182 Gene3D G3DSA:3.60.20.10 10 181 1.2E-75 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RMA_RS02360 d7f4d18eaae50459601cc7ea0a600c47 182 PANTHER PTHR32194 2 179 1.8E-99 T 22-04-2016 RMA_RS06595 21063f28ad87f696a4dea3db84be3f31 107 Pfam PF01381 Helix-turn-helix 49 85 6.9E-9 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RMA_RS06595 21063f28ad87f696a4dea3db84be3f31 107 SUPERFAMILY SSF47413 49 91 1.8E-10 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RMA_RS06595 21063f28ad87f696a4dea3db84be3f31 107 Gene3D G3DSA:1.10.260.40 47 98 5.3E-19 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RMA_RS06595 21063f28ad87f696a4dea3db84be3f31 107 PANTHER PTHR36511:SF2 46 105 1.8E-17 T 22-04-2016 RMA_RS06595 21063f28ad87f696a4dea3db84be3f31 107 SMART SM00530 47 101 3.7E-5 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RMA_RS06595 21063f28ad87f696a4dea3db84be3f31 107 PANTHER PTHR36511 46 105 1.8E-17 T 22-04-2016 RMA_RS01760 fe0cd4e9da107cedddaaddd45999e51d 450 Pfam PF00072 Response regulator receiver domain 154 265 1.2E-7 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RMA_RS01760 fe0cd4e9da107cedddaaddd45999e51d 450 Pfam PF00072 Response regulator receiver domain 4 115 7.6E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RMA_RS01760 fe0cd4e9da107cedddaaddd45999e51d 450 SMART SM00267 278 450 1.0E-53 T 22-04-2016 IPR000160 GGDEF domain RMA_RS01760 fe0cd4e9da107cedddaaddd45999e51d 450 SUPERFAMILY SSF52172 1 132 6.83E-39 T 22-04-2016 IPR011006 CheY-like superfamily RMA_RS01760 fe0cd4e9da107cedddaaddd45999e51d 450 Gene3D G3DSA:3.40.50.2300 151 278 1.7E-15 T 22-04-2016 RMA_RS01760 fe0cd4e9da107cedddaaddd45999e51d 450 Gene3D G3DSA:3.40.50.2300 2 128 6.7E-42 T 22-04-2016 RMA_RS01760 fe0cd4e9da107cedddaaddd45999e51d 450 Gene3D G3DSA:3.30.70.270 291 448 2.4E-53 T 22-04-2016 RMA_RS01760 fe0cd4e9da107cedddaaddd45999e51d 450 SUPERFAMILY SSF52172 147 281 2.28E-18 T 22-04-2016 IPR011006 CheY-like superfamily RMA_RS01760 fe0cd4e9da107cedddaaddd45999e51d 450 SMART SM00448 152 264 0.0077 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RMA_RS01760 fe0cd4e9da107cedddaaddd45999e51d 450 SMART SM00448 2 115 2.8E-40 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RMA_RS01760 fe0cd4e9da107cedddaaddd45999e51d 450 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 287 448 1.4E-52 T 22-04-2016 IPR000160 GGDEF domain RMA_RS01760 fe0cd4e9da107cedddaaddd45999e51d 450 SUPERFAMILY SSF55073 293 448 6.04E-48 T 22-04-2016 IPR029787 Nucleotide cyclase RMA_RS01760 fe0cd4e9da107cedddaaddd45999e51d 450 PANTHER PTHR24423 3 157 3.8E-38 T 22-04-2016 RMA_RS01760 fe0cd4e9da107cedddaaddd45999e51d 450 Pfam PF00990 Diguanylate cyclase, GGDEF domain 288 446 8.4E-50 T 22-04-2016 IPR000160 GGDEF domain RMA_RS03020 575340a41ab0e96853083e57d717db58 653 SUPERFAMILY SSF48435 27 474 1.96E-44 T 22-04-2016 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 RMA_RS03020 575340a41ab0e96853083e57d717db58 653 Gene3D G3DSA:1.10.530.10 492 638 2.1E-37 T 22-04-2016 RMA_RS03020 575340a41ab0e96853083e57d717db58 653 Pfam PF01464 Transglycosylase SLT domain 492 594 7.4E-21 T 22-04-2016 IPR008258 Transglycosylase SLT domain 1 RMA_RS03020 575340a41ab0e96853083e57d717db58 653 Gene3D G3DSA:1.25.20.10 28 228 4.0E-11 T 22-04-2016 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 RMA_RS03020 575340a41ab0e96853083e57d717db58 653 Gene3D G3DSA:1.25.20.10 349 388 6.4E-7 T 22-04-2016 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 RMA_RS03020 575340a41ab0e96853083e57d717db58 653 SUPERFAMILY SSF53955 492 638 1.81E-37 T 22-04-2016 IPR023346 Lysozyme-like domain RMA_RS03020 575340a41ab0e96853083e57d717db58 653 PANTHER PTHR21666 492 634 3.8E-30 T 22-04-2016 RMA_RS07020 7fa153a683b440d65f4b7414fa65cea7 274 Gene3D G3DSA:3.40.50.1820 134 260 4.3E-12 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS07020 7fa153a683b440d65f4b7414fa65cea7 274 SUPERFAMILY SSF53474 45 261 2.43E-14 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS06220 612a01f2f17c2424b8172f261a0e2468 167 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 131 141 - T 22-04-2016 IPR020549 Endoribonuclease YbeY, conserved site RMA_RS06220 612a01f2f17c2424b8172f261a0e2468 167 Pfam PF02130 Uncharacterized protein family UPF0054 17 159 1.4E-33 T 22-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RMA_RS06220 612a01f2f17c2424b8172f261a0e2468 167 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 45 160 5.4E-31 T 22-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RMA_RS06220 612a01f2f17c2424b8172f261a0e2468 167 PANTHER PTHR22881 43 167 2.6E-29 T 22-04-2016 RMA_RS06220 612a01f2f17c2424b8172f261a0e2468 167 SUPERFAMILY SSF55486 23 167 2.7E-39 T 22-04-2016 RMA_RS06220 612a01f2f17c2424b8172f261a0e2468 167 Gene3D G3DSA:3.40.390.30 4 163 1.3E-40 T 22-04-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 RMA_RS06220 612a01f2f17c2424b8172f261a0e2468 167 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 1 165 20.648 T 22-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RMA_RS03115 8fb9ee120b657a00a03de0d3fe366096 181 PANTHER PTHR32063 1 181 1.5E-69 T 22-04-2016 RMA_RS03115 8fb9ee120b657a00a03de0d3fe366096 181 PANTHER PTHR32063:SF21 1 181 1.5E-69 T 22-04-2016 RMA_RS03115 8fb9ee120b657a00a03de0d3fe366096 181 PRINTS PR00702 Acriflavin resistance protein family signature 114 137 5.6E-5 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS03115 8fb9ee120b657a00a03de0d3fe366096 181 PRINTS PR00702 Acriflavin resistance protein family signature 7 28 5.6E-5 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS03115 8fb9ee120b657a00a03de0d3fe366096 181 PRINTS PR00702 Acriflavin resistance protein family signature 35 59 5.6E-5 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS03115 8fb9ee120b657a00a03de0d3fe366096 181 Pfam PF00873 AcrB/AcrD/AcrF family 1 137 6.0E-40 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RMA_RS03115 8fb9ee120b657a00a03de0d3fe366096 181 Gene3D G3DSA:1.10.3850.10 2 141 9.4E-30 T 22-04-2016 RMA_RS03115 8fb9ee120b657a00a03de0d3fe366096 181 SUPERFAMILY SSF82866 2 146 1.83E-26 T 22-04-2016 RMA_RS02535 c6441c1ad5c081c8d90ce002820343de 127 PANTHER PTHR10108 19 95 2.7E-13 T 22-04-2016 RMA_RS02535 c6441c1ad5c081c8d90ce002820343de 127 SUPERFAMILY SSF53335 11 103 2.63E-20 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS02535 c6441c1ad5c081c8d90ce002820343de 127 Pfam PF13649 Methyltransferase domain 20 95 2.2E-13 T 22-04-2016 RMA_RS02535 c6441c1ad5c081c8d90ce002820343de 127 PANTHER PTHR10108:SF358 19 95 2.7E-13 T 22-04-2016 RMA_RS02535 c6441c1ad5c081c8d90ce002820343de 127 Gene3D G3DSA:3.40.50.150 10 116 1.4E-21 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS04405 d583ea493518ec7bc8e0356d9feb95ab 117 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 5 109 1.0E-38 T 22-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RMA_RS04405 d583ea493518ec7bc8e0356d9feb95ab 117 SUPERFAMILY SSF89360 3 96 3.34E-28 T 22-04-2016 IPR000361 FeS cluster biogenesis RMA_RS04405 d583ea493518ec7bc8e0356d9feb95ab 117 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 91 108 - T 22-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site RMA_RS04405 d583ea493518ec7bc8e0356d9feb95ab 117 Pfam PF01521 Iron-sulphur cluster biosynthesis 5 106 5.2E-20 T 22-04-2016 IPR000361 FeS cluster biogenesis RMA_RS04405 d583ea493518ec7bc8e0356d9feb95ab 117 PANTHER PTHR10072:SF41 1 110 1.4E-48 T 22-04-2016 RMA_RS04405 d583ea493518ec7bc8e0356d9feb95ab 117 PANTHER PTHR10072 1 110 1.4E-48 T 22-04-2016 RMA_RS04405 d583ea493518ec7bc8e0356d9feb95ab 117 Gene3D G3DSA:2.60.300.12 4 99 4.1E-33 T 22-04-2016 IPR000361 FeS cluster biogenesis RMA_RS03610 7b01e67fa55c0621b63b7f4a5b6a8875 183 PRINTS PR01576 Peptide deformylase signature 95 106 1.2E-27 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS03610 7b01e67fa55c0621b63b7f4a5b6a8875 183 PRINTS PR01576 Peptide deformylase signature 126 155 1.2E-27 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS03610 7b01e67fa55c0621b63b7f4a5b6a8875 183 PRINTS PR01576 Peptide deformylase signature 37 66 1.2E-27 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS03610 7b01e67fa55c0621b63b7f4a5b6a8875 183 PRINTS PR01576 Peptide deformylase signature 107 125 1.2E-27 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS03610 7b01e67fa55c0621b63b7f4a5b6a8875 183 Gene3D G3DSA:3.90.45.10 9 170 2.7E-51 T 22-04-2016 IPR023635 Peptide deformylase RMA_RS03610 7b01e67fa55c0621b63b7f4a5b6a8875 183 PIRSF PIRSF004749 1 182 3.2E-55 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS03610 7b01e67fa55c0621b63b7f4a5b6a8875 183 PANTHER PTHR10458 5 176 1.3E-56 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS03610 7b01e67fa55c0621b63b7f4a5b6a8875 183 Pfam PF01327 Polypeptide deformylase 9 158 2.3E-44 T 22-04-2016 IPR023635 Peptide deformylase RMA_RS03610 7b01e67fa55c0621b63b7f4a5b6a8875 183 SUPERFAMILY SSF56420 8 170 1.57E-50 T 22-04-2016 IPR023635 Peptide deformylase RMA_RS03610 7b01e67fa55c0621b63b7f4a5b6a8875 183 Hamap MF_00163 Peptide deformylase [def]. 6 168 25.25 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS03610 7b01e67fa55c0621b63b7f4a5b6a8875 183 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 9 165 2.7E-45 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RMA_RS03245 679c2bbffc975df41d41ec244fa2bee0 152 ProSitePatterns PS01317 SsrA-binding protein. 26 38 - T 22-04-2016 IPR020081 SsrA-binding protein, conserved site RMA_RS03245 679c2bbffc975df41d41ec244fa2bee0 152 SUPERFAMILY SSF74982 5 132 1.57E-47 T 22-04-2016 IPR023620 Small protein B RMA_RS03245 679c2bbffc975df41d41ec244fa2bee0 152 Pfam PF01668 SmpB protein 7 71 4.6E-27 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 RMA_RS03245 679c2bbffc975df41d41ec244fa2bee0 152 PANTHER PTHR30308:SF2 6 151 8.9E-73 T 22-04-2016 RMA_RS03245 679c2bbffc975df41d41ec244fa2bee0 152 Hamap MF_00023 SsrA-binding protein [smpB]. 1 152 68.317 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 RMA_RS03245 679c2bbffc975df41d41ec244fa2bee0 152 TIGRFAM TIGR00086 smpB: SsrA-binding protein 7 149 8.8E-56 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 RMA_RS03245 679c2bbffc975df41d41ec244fa2bee0 152 Gene3D G3DSA:2.40.280.10 6 127 1.4E-48 T 22-04-2016 IPR023620 Small protein B RMA_RS03245 679c2bbffc975df41d41ec244fa2bee0 152 PANTHER PTHR30308 6 151 8.9E-73 T 22-04-2016 RMA_RS03245 679c2bbffc975df41d41ec244fa2bee0 152 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 8 132 8.0E-59 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 RMA_RS04150 5a6827a6fcfc6b7a665c73504bf4fa69 248 PANTHER PTHR22572:SF115 9 243 6.1E-56 T 22-04-2016 RMA_RS04150 5a6827a6fcfc6b7a665c73504bf4fa69 248 PANTHER PTHR22572 9 243 6.1E-56 T 22-04-2016 RMA_RS04150 5a6827a6fcfc6b7a665c73504bf4fa69 248 Gene3D G3DSA:3.90.550.10 5 246 2.6E-58 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RMA_RS04150 5a6827a6fcfc6b7a665c73504bf4fa69 248 SUPERFAMILY SSF53448 8 245 4.02E-50 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RMA_RS04150 5a6827a6fcfc6b7a665c73504bf4fa69 248 Pfam PF12804 MobA-like NTP transferase domain 11 141 2.1E-20 T 22-04-2016 IPR025877 MobA-like NTP transferase RMA_RS07625 11ebe50a8f14f72cc14d751f7d720e1c 67 Gene3D G3DSA:3.80.10.10 13 54 7.4E-6 T 22-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like RMA_RS07625 11ebe50a8f14f72cc14d751f7d720e1c 67 Pfam PF13516 Leucine Rich repeat 13 35 6.0E-6 T 22-04-2016 IPR001611 Leucine-rich repeat GO:0005515 RMA_RS01160 fc1d3bdf2ad9df81b95fa9d25a2b38f4 93 Pfam PF07896 Protein of unknown function (DUF1674) 61 93 3.3E-13 T 22-04-2016 IPR012875 Protein of unknown function DUF1674 RMA_RS01160 fc1d3bdf2ad9df81b95fa9d25a2b38f4 93 PANTHER PTHR28524:SF3 65 93 5.1E-16 T 22-04-2016 RMA_RS01160 fc1d3bdf2ad9df81b95fa9d25a2b38f4 93 PANTHER PTHR28524 65 93 5.1E-16 T 22-04-2016 RMA_RS01160 fc1d3bdf2ad9df81b95fa9d25a2b38f4 93 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 8 55 2.4E-30 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS04330 c73466ffbf390b57124faf7b9aeee59c 225 Pfam PF02602 Uroporphyrinogen-III synthase HemD 30 196 1.1E-8 T 22-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS04330 c73466ffbf390b57124faf7b9aeee59c 225 SUPERFAMILY SSF69618 1 219 5.1E-20 T 22-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RMA_RS05815 112e72e928fe221cf527067c8d725fe2 425 TIGRFAM TIGR01849 PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular 11 411 1.2E-194 T 22-04-2016 IPR010915 Polyhydroxyalkanoate depolymerase RMA_RS05815 112e72e928fe221cf527067c8d725fe2 425 SUPERFAMILY SSF53474 108 409 9.6E-21 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS05815 112e72e928fe221cf527067c8d725fe2 425 Pfam PF06850 PHB de-polymerase C-terminus 211 411 1.2E-91 T 22-04-2016 IPR009656 PHB de-polymerase, C-terminal RMA_RS05815 112e72e928fe221cf527067c8d725fe2 425 PIRSF PIRSF020818 6 419 9.6E-173 T 22-04-2016 IPR010915 Polyhydroxyalkanoate depolymerase RMA_RS05815 112e72e928fe221cf527067c8d725fe2 425 Gene3D G3DSA:3.40.50.1820 111 230 3.0E-5 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS05815 112e72e928fe221cf527067c8d725fe2 425 Gene3D G3DSA:3.40.50.1820 280 393 3.0E-5 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS05930 45ad79ba58d0a1b7b4e1e5b493cd266c 183 SUPERFAMILY SSF55729 10 181 3.48E-41 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase RMA_RS05930 45ad79ba58d0a1b7b4e1e5b493cd266c 183 Pfam PF13302 Acetyltransferase (GNAT) domain 19 157 3.5E-24 T 22-04-2016 IPR000182 GNAT domain GO:0008080 RMA_RS05930 45ad79ba58d0a1b7b4e1e5b493cd266c 183 Gene3D G3DSA:3.40.630.30 10 181 1.5E-40 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase RMA_RS05930 45ad79ba58d0a1b7b4e1e5b493cd266c 183 PANTHER PTHR13256 19 180 3.3E-39 T 22-04-2016 RMA_RS07075 8a34ee6a53f961778379123a4c48dc3a 435 Gene3D G3DSA:1.10.230.10 286 380 1.8E-43 T 22-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain RMA_RS07075 8a34ee6a53f961778379123a4c48dc3a 435 ProSitePatterns PS00480 Citrate synthase signature. 308 320 - T 22-04-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 RMA_RS07075 8a34ee6a53f961778379123a4c48dc3a 435 PANTHER PTHR11739 47 435 5.0E-195 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RMA_RS07075 8a34ee6a53f961778379123a4c48dc3a 435 SUPERFAMILY SSF48256 11 435 5.76E-162 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RMA_RS07075 8a34ee6a53f961778379123a4c48dc3a 435 Gene3D G3DSA:1.10.580.10 58 285 4.5E-96 T 22-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 RMA_RS07075 8a34ee6a53f961778379123a4c48dc3a 435 PIRSF PIRSF001369 43 435 2.3E-173 T 22-04-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 RMA_RS07075 8a34ee6a53f961778379123a4c48dc3a 435 Pfam PF00285 Citrate synthase, C-terminal domain 52 418 7.6E-132 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RMA_RS07075 8a34ee6a53f961778379123a4c48dc3a 435 PRINTS PR00143 Citrate synthase signature 386 400 7.6E-56 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RMA_RS07075 8a34ee6a53f961778379123a4c48dc3a 435 PRINTS PR00143 Citrate synthase signature 224 239 7.6E-56 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RMA_RS07075 8a34ee6a53f961778379123a4c48dc3a 435 PRINTS PR00143 Citrate synthase signature 301 321 7.6E-56 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RMA_RS07075 8a34ee6a53f961778379123a4c48dc3a 435 PRINTS PR00143 Citrate synthase signature 366 382 7.6E-56 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RMA_RS07075 8a34ee6a53f961778379123a4c48dc3a 435 PRINTS PR00143 Citrate synthase signature 170 183 7.6E-56 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RMA_RS07075 8a34ee6a53f961778379123a4c48dc3a 435 PRINTS PR00143 Citrate synthase signature 246 274 7.6E-56 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 RMA_RS07075 8a34ee6a53f961778379123a4c48dc3a 435 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 21 429 5.1E-214 T 22-04-2016 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 UniPathway: UPA00223 RMA_RS03230 5c9c6b78f948ceae21b10c5fef5cd5af 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 224 1.2E-15 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RMA_RS03230 5c9c6b78f948ceae21b10c5fef5cd5af 226 Pfam PF00072 Response regulator receiver domain 9 117 1.2E-30 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RMA_RS03230 5c9c6b78f948ceae21b10c5fef5cd5af 226 PANTHER PTHR26402 6 224 4.7E-69 T 22-04-2016 RMA_RS03230 5c9c6b78f948ceae21b10c5fef5cd5af 226 SUPERFAMILY SSF52172 5 131 1.42E-38 T 22-04-2016 IPR011006 CheY-like superfamily RMA_RS03230 5c9c6b78f948ceae21b10c5fef5cd5af 226 PANTHER PTHR26402:SF292 6 224 4.7E-69 T 22-04-2016 RMA_RS03230 5c9c6b78f948ceae21b10c5fef5cd5af 226 SMART SM00448 6 117 3.3E-40 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RMA_RS03230 5c9c6b78f948ceae21b10c5fef5cd5af 226 SUPERFAMILY SSF46894 128 225 5.1E-19 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RMA_RS03230 5c9c6b78f948ceae21b10c5fef5cd5af 226 SMART SM00862 152 224 1.6E-15 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RMA_RS03230 5c9c6b78f948ceae21b10c5fef5cd5af 226 Gene3D G3DSA:3.40.50.2300 5 129 1.6E-39 T 22-04-2016 RMA_RS03230 5c9c6b78f948ceae21b10c5fef5cd5af 226 Gene3D G3DSA:1.10.10.10 130 224 4.4E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RMA_RS00865 743451ebac4cd6b47e3529803894b7ee 308 Gene3D G3DSA:1.20.1640.10 103 304 4.1E-34 T 22-04-2016 RMA_RS00865 743451ebac4cd6b47e3529803894b7ee 308 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 44 289 7.2E-91 T 22-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RMA_RS00865 743451ebac4cd6b47e3529803894b7ee 308 PANTHER PTHR30081 5 300 7.1E-76 T 22-04-2016 RMA_RS00865 743451ebac4cd6b47e3529803894b7ee 308 Pfam PF07549 SecD/SecF GG Motif 37 63 1.5E-8 T 22-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RMA_RS00865 743451ebac4cd6b47e3529803894b7ee 308 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 15 300 27.497 T 22-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RMA_RS00865 743451ebac4cd6b47e3529803894b7ee 308 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 116 286 6.0E-62 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RMA_RS00865 743451ebac4cd6b47e3529803894b7ee 308 PRINTS PR01755 Bacterial translocase SecF protein signature 42 57 3.8E-31 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RMA_RS00865 743451ebac4cd6b47e3529803894b7ee 308 PRINTS PR01755 Bacterial translocase SecF protein signature 237 252 3.8E-31 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RMA_RS00865 743451ebac4cd6b47e3529803894b7ee 308 PRINTS PR01755 Bacterial translocase SecF protein signature 157 171 3.8E-31 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RMA_RS00865 743451ebac4cd6b47e3529803894b7ee 308 PRINTS PR01755 Bacterial translocase SecF protein signature 205 223 3.8E-31 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RMA_RS00865 743451ebac4cd6b47e3529803894b7ee 308 Pfam PF02355 Protein export membrane protein 112 298 8.0E-73 T 22-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RMA_RS00865 743451ebac4cd6b47e3529803894b7ee 308 SUPERFAMILY SSF82866 99 302 9.55E-44 T 22-04-2016 RMA_RS06290 7fe5d2b4755d639ab44c1ba868b54682 372 Gene3D G3DSA:3.40.50.2300 41 146 2.1E-11 T 22-04-2016 RMA_RS06290 7fe5d2b4755d639ab44c1ba868b54682 372 SUPERFAMILY SSF53822 41 366 4.71E-26 T 22-04-2016 IPR028082 Periplasmic binding protein-like I RMA_RS06290 7fe5d2b4755d639ab44c1ba868b54682 372 Pfam PF13458 Periplasmic binding protein 41 256 4.6E-8 T 22-04-2016 IPR028081 Leucine-binding protein domain RMA_RS01180 c6899122c1952e8c4e65929f067c4afa 106 PANTHER PTHR33175 12 106 1.7E-30 T 22-04-2016 RMA_RS01180 c6899122c1952e8c4e65929f067c4afa 106 Gene3D G3DSA:4.10.520.10 12 106 7.0E-32 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RMA_RS01180 c6899122c1952e8c4e65929f067c4afa 106 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 62 81 - T 22-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RMA_RS01180 c6899122c1952e8c4e65929f067c4afa 106 SUPERFAMILY SSF47729 12 106 1.0E-24 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RMA_RS01180 c6899122c1952e8c4e65929f067c4afa 106 PRINTS PR01727 Prokaryotic integration host factor signature 74 87 1.1E-14 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RMA_RS01180 c6899122c1952e8c4e65929f067c4afa 106 PRINTS PR01727 Prokaryotic integration host factor signature 56 71 1.1E-14 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RMA_RS01180 c6899122c1952e8c4e65929f067c4afa 106 PRINTS PR01727 Prokaryotic integration host factor signature 90 104 1.1E-14 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RMA_RS01180 c6899122c1952e8c4e65929f067c4afa 106 Pfam PF00216 Bacterial DNA-binding protein 12 106 4.1E-26 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RMA_RS01180 c6899122c1952e8c4e65929f067c4afa 106 SMART SM00411 12 106 2.4E-39 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RMA_RS06625 079319aafeab54c0a857063524b94396 191 PANTHER PTHR24220 14 178 2.0E-40 T 22-04-2016 RMA_RS06625 079319aafeab54c0a857063524b94396 191 SMART SM00382 21 188 5.6E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS06625 079319aafeab54c0a857063524b94396 191 Gene3D G3DSA:3.40.50.300 12 185 9.7E-33 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06625 079319aafeab54c0a857063524b94396 191 Pfam PF00005 ABC transporter 14 145 1.4E-24 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS06625 079319aafeab54c0a857063524b94396 191 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 14 190 4.6E-42 T 22-04-2016 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 RMA_RS06625 079319aafeab54c0a857063524b94396 191 SUPERFAMILY SSF52540 9 183 2.37E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06625 079319aafeab54c0a857063524b94396 191 PANTHER PTHR24220:SF508 14 178 2.0E-40 T 22-04-2016 RMA_RS03735 3d14f2fffa31da5e1c84f96acefe5abf 148 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 2 144 3.6E-53 T 22-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RMA_RS03735 3d14f2fffa31da5e1c84f96acefe5abf 148 SUPERFAMILY SSF54364 2 54 1.83E-20 T 22-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RMA_RS03735 3d14f2fffa31da5e1c84f96acefe5abf 148 SUPERFAMILY SSF55200 61 144 1.44E-26 T 22-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RMA_RS03735 3d14f2fffa31da5e1c84f96acefe5abf 148 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 3 52 5.6E-21 T 22-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RMA_RS03735 3d14f2fffa31da5e1c84f96acefe5abf 148 PANTHER PTHR10938 1 143 2.2E-50 T 22-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RMA_RS03735 3d14f2fffa31da5e1c84f96acefe5abf 148 Gene3D G3DSA:3.30.110.10 55 144 9.7E-31 T 22-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RMA_RS03735 3d14f2fffa31da5e1c84f96acefe5abf 148 ProSitePatterns PS00938 Initiation factor 3 signature. 34 47 - T 22-04-2016 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 RMA_RS03735 3d14f2fffa31da5e1c84f96acefe5abf 148 Gene3D G3DSA:3.10.20.80 1 54 2.5E-24 T 22-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RMA_RS03735 3d14f2fffa31da5e1c84f96acefe5abf 148 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 146 22.876 T 22-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RMA_RS03735 3d14f2fffa31da5e1c84f96acefe5abf 148 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 60 143 8.8E-31 T 22-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RMA_RS01870 2df640ce90b3a84458810dc25e5197dc 690 Pfam PF00575 S1 RNA binding domain 38 78 1.3E-4 T 22-04-2016 IPR003029 S1 domain GO:0003676 RMA_RS01870 2df640ce90b3a84458810dc25e5197dc 690 PANTHER PTHR30001:SF1 1 679 2.8E-170 T 22-04-2016 RMA_RS01870 2df640ce90b3a84458810dc25e5197dc 690 PANTHER PTHR30001 1 679 2.8E-170 T 22-04-2016 RMA_RS01870 2df640ce90b3a84458810dc25e5197dc 690 SUPERFAMILY SSF50249 41 82 5.52E-15 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS01870 2df640ce90b3a84458810dc25e5197dc 690 SUPERFAMILY SSF50249 160 203 5.52E-15 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS01870 2df640ce90b3a84458810dc25e5197dc 690 SMART SM00316 39 129 2.8E-4 T 22-04-2016 IPR022967 RNA-binding domain, S1 RMA_RS01870 2df640ce90b3a84458810dc25e5197dc 690 Pfam PF10150 Ribonuclease E/G family 200 472 8.7E-91 T 22-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 RMA_RS01870 2df640ce90b3a84458810dc25e5197dc 690 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 506 1.0E-174 T 22-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 RMA_RS01870 2df640ce90b3a84458810dc25e5197dc 690 Gene3D G3DSA:2.40.50.140 162 204 2.5E-31 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS01870 2df640ce90b3a84458810dc25e5197dc 690 Gene3D G3DSA:2.40.50.140 35 84 2.5E-31 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS03480 620c9a897f5733846ba43af876f9c2e2 81 Gene3D G3DSA:2.70.50.50 1 69 2.1E-5 T 22-04-2016 RMA_RS00035 9ed57bbcc1c19a8241e004e2beecf139 269 SUPERFAMILY SSF51161 4 257 1.18E-61 T 22-04-2016 IPR011004 Trimeric LpxA-like RMA_RS00035 9ed57bbcc1c19a8241e004e2beecf139 269 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 53 96 0.0016 T 22-04-2016 IPR001451 Hexapeptide repeat RMA_RS00035 9ed57bbcc1c19a8241e004e2beecf139 269 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 107 140 3.8E-7 T 22-04-2016 IPR001451 Hexapeptide repeat RMA_RS00035 9ed57bbcc1c19a8241e004e2beecf139 269 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 15 50 4.9E-8 T 22-04-2016 IPR001451 Hexapeptide repeat RMA_RS00035 9ed57bbcc1c19a8241e004e2beecf139 269 Gene3D G3DSA:2.160.10.10 5 186 5.6E-42 T 22-04-2016 RMA_RS00035 9ed57bbcc1c19a8241e004e2beecf139 269 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 6 260 4.1E-104 T 22-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RMA_RS00035 9ed57bbcc1c19a8241e004e2beecf139 269 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 151 179 - T 22-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RMA_RS00035 9ed57bbcc1c19a8241e004e2beecf139 269 PIRSF PIRSF000456 2 269 3.4E-100 T 22-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RMA_RS00035 9ed57bbcc1c19a8241e004e2beecf139 269 Gene3D G3DSA:1.20.1180.10 195 261 3.3E-9 T 22-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RMA_RS00035 9ed57bbcc1c19a8241e004e2beecf139 269 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 3 261 42.619 T 22-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RMA_RS00035 9ed57bbcc1c19a8241e004e2beecf139 269 PANTHER PTHR23416 6 252 2.0E-101 T 22-04-2016 RMA_RS00035 9ed57bbcc1c19a8241e004e2beecf139 269 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 178 260 1.1E-14 T 22-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RMA_RS00035 9ed57bbcc1c19a8241e004e2beecf139 269 PANTHER PTHR23416:SF8 6 252 2.0E-101 T 22-04-2016 RMA_RS00710 23374de3e82b9489a1b87bc63e9809ad 334 Pfam PF13489 Methyltransferase domain 158 312 3.6E-7 T 22-04-2016 RMA_RS00710 23374de3e82b9489a1b87bc63e9809ad 334 SUPERFAMILY SSF48452 42 108 9.86E-10 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS00710 23374de3e82b9489a1b87bc63e9809ad 334 Gene3D G3DSA:1.25.40.10 45 108 1.3E-8 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RMA_RS00710 23374de3e82b9489a1b87bc63e9809ad 334 Gene3D G3DSA:3.40.50.150 160 332 4.8E-15 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS00710 23374de3e82b9489a1b87bc63e9809ad 334 SUPERFAMILY SSF53335 135 318 3.41E-21 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS03035 6665d4e0e966b0ee69990132c3fc751e 838 SUPERFAMILY SSF52980 560 721 3.11E-6 T 22-04-2016 IPR011335 Restriction endonuclease type II-like RMA_RS03035 6665d4e0e966b0ee69990132c3fc751e 838 Pfam PF12705 PD-(D/E)XK nuclease superfamily 558 742 1.6E-22 T 22-04-2016 RMA_RS03035 6665d4e0e966b0ee69990132c3fc751e 838 SUPERFAMILY SSF52540 209 519 3.19E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS03035 6665d4e0e966b0ee69990132c3fc751e 838 TIGRFAM TIGR03777 RPE4: rickettsial palindromic element RPE4 domain 523 545 2.1E-9 T 22-04-2016 IPR022439 Rickettsia palindromic element RPE4 RMA_RS03745 e45181f7ab237bbd175074434d249d7f 361 Gene3D G3DSA:1.20.58.410 7 92 1.5E-6 T 22-04-2016 RMA_RS03745 e45181f7ab237bbd175074434d249d7f 361 Gene3D G3DSA:3.30.160.20 209 287 1.6E-36 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain RMA_RS03745 e45181f7ab237bbd175074434d249d7f 361 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 226 242 - T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RMA_RS03745 e45181f7ab237bbd175074434d249d7f 361 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 3 356 38.152 T 22-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RMA_RS03745 e45181f7ab237bbd175074434d249d7f 361 PANTHER PTHR11075:SF9 5 355 1.5E-168 T 22-04-2016 RMA_RS03745 e45181f7ab237bbd175074434d249d7f 361 SMART SM00937 62 177 2.9E-48 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RMA_RS03745 e45181f7ab237bbd175074434d249d7f 361 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 4 352 6.0E-149 T 22-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RMA_RS03745 e45181f7ab237bbd175074434d249d7f 361 Pfam PF03462 PCRF domain 12 202 4.5E-63 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RMA_RS03745 e45181f7ab237bbd175074434d249d7f 361 Pfam PF00472 RF-1 domain 210 319 2.0E-42 T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RMA_RS03745 e45181f7ab237bbd175074434d249d7f 361 PANTHER PTHR11075 5 355 1.5E-168 T 22-04-2016 RMA_RS03745 e45181f7ab237bbd175074434d249d7f 361 SUPERFAMILY SSF75620 28 352 9.42E-124 T 22-04-2016 RMA_RS02780 20be7f2ff5f8eef553001a3dad196e85 310 Pfam PF03547 Membrane transport protein 153 305 4.2E-11 T 22-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 RMA_RS02780 20be7f2ff5f8eef553001a3dad196e85 310 PANTHER PTHR31752:SF13 11 29 7.6E-25 T 22-04-2016 RMA_RS02780 20be7f2ff5f8eef553001a3dad196e85 310 PANTHER PTHR31752:SF13 83 310 7.6E-25 T 22-04-2016 RMA_RS02780 20be7f2ff5f8eef553001a3dad196e85 310 PANTHER PTHR31752 11 29 7.6E-25 T 22-04-2016 RMA_RS02780 20be7f2ff5f8eef553001a3dad196e85 310 PANTHER PTHR31752 83 310 7.6E-25 T 22-04-2016 RMA_RS06945 fe8567907e68ca81bb81957a43235680 224 SUPERFAMILY SSF56925 26 222 3.4E-15 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RMA_RS06945 fe8567907e68ca81bb81957a43235680 224 Pfam PF13505 Outer membrane protein beta-barrel domain 11 222 7.7E-11 T 22-04-2016 IPR027385 Outer membrane protein beta-barrel RMA_RS06945 fe8567907e68ca81bb81957a43235680 224 Gene3D G3DSA:2.40.160.20 14 222 7.5E-19 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RMA_RS03070 5ab02718950036411189b14def98910e 454 Pfam PF01551 Peptidase family M23 311 407 1.2E-31 T 22-04-2016 IPR016047 Peptidase M23 RMA_RS03070 5ab02718950036411189b14def98910e 454 PANTHER PTHR21666 288 410 5.0E-43 T 22-04-2016 RMA_RS03070 5ab02718950036411189b14def98910e 454 Gene3D G3DSA:2.70.70.10 267 410 7.1E-47 T 22-04-2016 RMA_RS03070 5ab02718950036411189b14def98910e 454 SUPERFAMILY SSF51261 156 409 1.52E-66 T 22-04-2016 IPR011055 Duplicated hybrid motif RMA_RS03575 790d83e9812988c6e9d96e42f251bc50 511 Pfam PF03219 TLC ATP/ADP transporter 14 503 2.2E-191 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RMA_RS03575 790d83e9812988c6e9d96e42f251bc50 511 PANTHER PTHR31187 26 508 1.2E-109 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RMA_RS03575 790d83e9812988c6e9d96e42f251bc50 511 TIGRFAM TIGR00769 AAA: ADP/ATP carrier protein family 29 503 6.0E-133 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RMA_RS03575 790d83e9812988c6e9d96e42f251bc50 511 PANTHER PTHR31187:SF1 26 508 1.2E-109 T 22-04-2016 RMA_RS00960 a749c3a3da409e7b6f2af5caea4651d8 129 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 128 37.906 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RMA_RS00960 a749c3a3da409e7b6f2af5caea4651d8 129 SUPERFAMILY SSF50249 2 122 1.97E-45 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS00960 a749c3a3da409e7b6f2af5caea4651d8 129 Pfam PF00164 Ribosomal protein S12/S23 9 122 5.1E-41 T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00960 a749c3a3da409e7b6f2af5caea4651d8 129 PANTHER PTHR11652 1 116 9.8E-57 T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00960 a749c3a3da409e7b6f2af5caea4651d8 129 PRINTS PR01034 Ribosomal protein S12 signature 94 110 1.8E-43 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RMA_RS00960 a749c3a3da409e7b6f2af5caea4651d8 129 PRINTS PR01034 Ribosomal protein S12 signature 110 122 1.8E-43 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RMA_RS00960 a749c3a3da409e7b6f2af5caea4651d8 129 PRINTS PR01034 Ribosomal protein S12 signature 77 94 1.8E-43 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RMA_RS00960 a749c3a3da409e7b6f2af5caea4651d8 129 PRINTS PR01034 Ribosomal protein S12 signature 42 57 1.8E-43 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RMA_RS00960 a749c3a3da409e7b6f2af5caea4651d8 129 PRINTS PR01034 Ribosomal protein S12 signature 58 77 1.8E-43 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RMA_RS00960 a749c3a3da409e7b6f2af5caea4651d8 129 PRINTS PR01034 Ribosomal protein S12 signature 27 42 1.8E-43 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RMA_RS00960 a749c3a3da409e7b6f2af5caea4651d8 129 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 3.4E-61 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RMA_RS00960 a749c3a3da409e7b6f2af5caea4651d8 129 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00960 a749c3a3da409e7b6f2af5caea4651d8 129 PIRSF PIRSF002133 1 124 3.7E-49 T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00960 a749c3a3da409e7b6f2af5caea4651d8 129 Gene3D G3DSA:2.40.50.140 1 123 4.6E-54 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS01360 515d2375b9050a8ed4cfce5206b84089 796 Pfam PF00905 Penicillin binding protein transpeptidase domain 295 468 2.9E-11 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RMA_RS01360 515d2375b9050a8ed4cfce5206b84089 796 SUPERFAMILY SSF53955 31 199 8.15E-49 T 22-04-2016 IPR023346 Lysozyme-like domain RMA_RS01360 515d2375b9050a8ed4cfce5206b84089 796 Pfam PF00912 Transglycosylase 52 198 6.7E-42 T 22-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RMA_RS01360 515d2375b9050a8ed4cfce5206b84089 796 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 714 792 4.6E-7 T 22-04-2016 IPR009647 Penicillin-binding, C-terminal KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.-|UniPathway: UPA00219 RMA_RS01360 515d2375b9050a8ed4cfce5206b84089 796 PANTHER PTHR32282 506 711 3.3E-127 T 22-04-2016 RMA_RS01360 515d2375b9050a8ed4cfce5206b84089 796 PANTHER PTHR32282 7 476 3.3E-127 T 22-04-2016 RMA_RS01360 515d2375b9050a8ed4cfce5206b84089 796 PANTHER PTHR32282:SF0 506 711 3.3E-127 T 22-04-2016 RMA_RS01360 515d2375b9050a8ed4cfce5206b84089 796 PANTHER PTHR32282:SF0 7 476 3.3E-127 T 22-04-2016 RMA_RS01360 515d2375b9050a8ed4cfce5206b84089 796 Gene3D G3DSA:1.10.3810.10 51 197 2.2E-39 T 22-04-2016 RMA_RS01360 515d2375b9050a8ed4cfce5206b84089 796 SUPERFAMILY SSF56601 506 668 2.4E-77 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS01360 515d2375b9050a8ed4cfce5206b84089 796 SUPERFAMILY SSF56601 256 466 2.4E-77 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS01360 515d2375b9050a8ed4cfce5206b84089 796 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 26 794 7.2E-203 T 22-04-2016 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.-|UniPathway: UPA00219 RMA_RS01360 515d2375b9050a8ed4cfce5206b84089 796 Gene3D G3DSA:3.40.710.10 507 656 2.3E-69 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS01360 515d2375b9050a8ed4cfce5206b84089 796 Gene3D G3DSA:3.40.710.10 259 475 2.3E-69 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RMA_RS03175 6180d7e3f5e477cd8fc6840e3f0391c9 349 PANTHER PTHR11538:SF40 92 331 3.0E-97 T 22-04-2016 RMA_RS03175 6180d7e3f5e477cd8fc6840e3f0391c9 349 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 19 87 1.9E-18 T 22-04-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RMA_RS03175 6180d7e3f5e477cd8fc6840e3f0391c9 349 PANTHER PTHR11538 92 331 3.0E-97 T 22-04-2016 RMA_RS03175 6180d7e3f5e477cd8fc6840e3f0391c9 349 Pfam PF01409 tRNA synthetases class II core domain (F) 91 332 3.7E-107 T 22-04-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 RMA_RS03175 6180d7e3f5e477cd8fc6840e3f0391c9 349 SUPERFAMILY SSF46589 15 99 1.15E-16 T 22-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RMA_RS03175 6180d7e3f5e477cd8fc6840e3f0391c9 349 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 333 46.723 T 22-04-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 RMA_RS03175 6180d7e3f5e477cd8fc6840e3f0391c9 349 SUPERFAMILY SSF55681 91 334 2.17E-79 T 22-04-2016 RMA_RS03175 6180d7e3f5e477cd8fc6840e3f0391c9 349 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 41 333 4.9E-105 T 22-04-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RMA_RS03175 6180d7e3f5e477cd8fc6840e3f0391c9 349 Gene3D G3DSA:3.30.930.10 12 334 1.4E-126 T 22-04-2016 RMA_RS06415 69ec5833055ed417f9820d6e46e20cd1 424 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 265 379 1.4E-36 T 22-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal RMA_RS06415 69ec5833055ed417f9820d6e46e20cd1 424 SUPERFAMILY SSF53901 225 421 5.27E-69 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RMA_RS06415 69ec5833055ed417f9820d6e46e20cd1 424 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 164 180 - T 22-04-2016 IPR018201 Beta-ketoacyl synthase, active site RMA_RS06415 69ec5833055ed417f9820d6e46e20cd1 424 Gene3D G3DSA:3.40.47.10 274 421 1.0E-57 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RMA_RS06415 69ec5833055ed417f9820d6e46e20cd1 424 PANTHER PTHR11712 1 424 7.1E-197 T 22-04-2016 RMA_RS06415 69ec5833055ed417f9820d6e46e20cd1 424 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 257 1.4E-60 T 22-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RMA_RS06415 69ec5833055ed417f9820d6e46e20cd1 424 SMART SM00825 Beta-ketoacyl synthase 6 422 2.3E-17 T 22-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RMA_RS06415 69ec5833055ed417f9820d6e46e20cd1 424 PANTHER PTHR11712:SF273 1 424 7.1E-197 T 22-04-2016 RMA_RS06415 69ec5833055ed417f9820d6e46e20cd1 424 PIRSF PIRSF000447 1 423 3.3E-177 T 22-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 RMA_RS06415 69ec5833055ed417f9820d6e46e20cd1 424 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 420 1.7E-186 T 22-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 RMA_RS06415 69ec5833055ed417f9820d6e46e20cd1 424 SUPERFAMILY SSF53901 4 264 1.92E-73 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RMA_RS06415 69ec5833055ed417f9820d6e46e20cd1 424 Gene3D G3DSA:3.40.47.10 2 270 4.6E-74 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RMA_RS03650 8c7222d27c900a73c8384e138e0e8ca6 180 PANTHER PTHR34295 9 176 6.5E-24 T 22-04-2016 RMA_RS03650 8c7222d27c900a73c8384e138e0e8ca6 180 Pfam PF02632 BioY family 36 176 3.0E-29 T 22-04-2016 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 RMA_RS03650 8c7222d27c900a73c8384e138e0e8ca6 180 PANTHER PTHR34295:SF1 9 176 6.5E-24 T 22-04-2016 RMA_RS03650 8c7222d27c900a73c8384e138e0e8ca6 180 PIRSF PIRSF016661 1 180 4.8E-45 T 22-04-2016 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 RMA_RS00980 ac6c6fbd9de28fbecb3129193cfeb91f 66 Gene3D G3DSA:1.20.5.1030 6 62 2.7E-22 T 22-04-2016 RMA_RS00980 ac6c6fbd9de28fbecb3129193cfeb91f 66 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 10 38 - T 22-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 RMA_RS00980 ac6c6fbd9de28fbecb3129193cfeb91f 66 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 9 61 1.8E-18 T 22-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 RMA_RS00980 ac6c6fbd9de28fbecb3129193cfeb91f 66 PANTHER PTHR33910:SF1 5 65 4.8E-15 T 22-04-2016 RMA_RS00980 ac6c6fbd9de28fbecb3129193cfeb91f 66 PANTHER PTHR33910 5 65 4.8E-15 T 22-04-2016 RMA_RS00980 ac6c6fbd9de28fbecb3129193cfeb91f 66 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 7 62 6.5E-21 T 22-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 RMA_RS00980 ac6c6fbd9de28fbecb3129193cfeb91f 66 Hamap MF_00422 Protein translocase subunit SecE [secE]. 5 60 12.522 T 22-04-2016 IPR022943 Preprotein translocase subunit SecE RMA_RS02130 8b52c7944e59e76d715a7dd795eeddc5 232 Pfam PF04335 VirB8 protein 21 222 6.5E-15 T 22-04-2016 IPR007430 Bacterial virulence protein VirB8 GO:0016020 RMA_RS02130 8b52c7944e59e76d715a7dd795eeddc5 232 SUPERFAMILY SSF54427 96 222 1.97E-26 T 22-04-2016 IPR032710 NTF2-like domain RMA_RS02080 2da488bf34fa1cd2f769e4f4c23664e0 64 PANTHER PTHR23508 2 64 5.2E-16 T 22-04-2016 RMA_RS02080 2da488bf34fa1cd2f769e4f4c23664e0 64 PANTHER PTHR23508:SF7 2 64 5.2E-16 T 22-04-2016 RMA_RS02080 2da488bf34fa1cd2f769e4f4c23664e0 64 SUPERFAMILY SSF103473 1 63 4.58E-5 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS05210 16efcbda4cc0cdaf7499c611199c078f 118 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 57 71 - T 22-04-2016 IPR020539 Ribonuclease P, conserved site GO:0004526 RMA_RS05210 16efcbda4cc0cdaf7499c611199c078f 118 SUPERFAMILY SSF54211 4 116 1.92E-16 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS05210 16efcbda4cc0cdaf7499c611199c078f 118 Pfam PF00825 Ribonuclease P 5 115 2.7E-18 T 22-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RMA_RS05210 16efcbda4cc0cdaf7499c611199c078f 118 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 1 116 11.438 T 22-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RMA_RS05210 16efcbda4cc0cdaf7499c611199c078f 118 Gene3D G3DSA:3.30.230.10 5 114 1.5E-20 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RMA_RS05210 16efcbda4cc0cdaf7499c611199c078f 118 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 4 116 4.7E-14 T 22-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RMA_RS05955 6f5a9f110fc270be9fe444ac204cfc20 82 ProDom PD196938 PRECURSOR SIGNAL RP697 1 82 4.0E-37 T 22-04-2016 IPR024247 Protein of unknown function DUF2673 RMA_RS05955 6f5a9f110fc270be9fe444ac204cfc20 82 Pfam PF10880 Protein of unknown function (DUF2673) 1 82 1.3E-53 T 22-04-2016 IPR024247 Protein of unknown function DUF2673 RMA_RS02240 c7a26b64a46bb8517a4abb504a6cb3a4 444 Pfam PF04052 TolB amino-terminal domain 22 128 7.3E-28 T 22-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RMA_RS02240 c7a26b64a46bb8517a4abb504a6cb3a4 444 SUPERFAMILY SSF69304 153 440 4.58E-51 T 22-04-2016 RMA_RS02240 c7a26b64a46bb8517a4abb504a6cb3a4 444 Pfam PF07676 WD40-like Beta Propeller Repeat 242 271 2.7E-4 T 22-04-2016 IPR011659 WD40-like Beta Propeller RMA_RS02240 c7a26b64a46bb8517a4abb504a6cb3a4 444 Pfam PF07676 WD40-like Beta Propeller Repeat 377 400 0.11 T 22-04-2016 IPR011659 WD40-like Beta Propeller RMA_RS02240 c7a26b64a46bb8517a4abb504a6cb3a4 444 Pfam PF07676 WD40-like Beta Propeller Repeat 325 349 3.2E-4 T 22-04-2016 IPR011659 WD40-like Beta Propeller RMA_RS02240 c7a26b64a46bb8517a4abb504a6cb3a4 444 Pfam PF07676 WD40-like Beta Propeller Repeat 282 316 3.8E-12 T 22-04-2016 IPR011659 WD40-like Beta Propeller RMA_RS02240 c7a26b64a46bb8517a4abb504a6cb3a4 444 SUPERFAMILY SSF52964 28 160 3.53E-33 T 22-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RMA_RS02240 c7a26b64a46bb8517a4abb504a6cb3a4 444 Hamap MF_00671 Protein TolB [tolB]. 2 439 33.57 T 22-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 RMA_RS02240 c7a26b64a46bb8517a4abb504a6cb3a4 444 Gene3D G3DSA:3.40.50.10070 22 151 3.6E-43 T 22-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RMA_RS02240 c7a26b64a46bb8517a4abb504a6cb3a4 444 PANTHER PTHR36842 4 444 7.1E-44 T 22-04-2016 RMA_RS02240 c7a26b64a46bb8517a4abb504a6cb3a4 444 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 16 440 1.6E-124 T 22-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 RMA_RS02240 c7a26b64a46bb8517a4abb504a6cb3a4 444 Gene3D G3DSA:2.130.10.10 152 440 7.4E-72 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RMA_RS04950 94c6a2c6dce4a5024abd52413ee9c599 127 Gene3D G3DSA:3.90.940.10 1 69 1.5E-6 T 22-04-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS04950 94c6a2c6dce4a5024abd52413ee9c599 127 SUPERFAMILY SSF63562 1 77 3.49E-16 T 22-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS04950 94c6a2c6dce4a5024abd52413ee9c599 127 Pfam PF01192 RNA polymerase Rpb6 8 61 1.6E-8 T 22-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS04950 94c6a2c6dce4a5024abd52413ee9c599 127 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 63 13.866 T 22-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS04950 94c6a2c6dce4a5024abd52413ee9c599 127 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 61 1.1E-26 T 22-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS04950 94c6a2c6dce4a5024abd52413ee9c599 127 SMART SM01409 8 62 3.4E-7 T 22-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RMA_RS03170 c15982411c6347adc8bb73f9000f8667 416 PANTHER PTHR11918:SF45 9 412 1.6E-121 T 22-04-2016 RMA_RS03170 c15982411c6347adc8bb73f9000f8667 416 Gene3D G3DSA:3.80.30.20 133 361 1.3E-66 T 22-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RMA_RS03170 c15982411c6347adc8bb73f9000f8667 416 Pfam PF00919 Uncharacterized protein family UPF0004 8 93 1.5E-16 T 22-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 RMA_RS03170 c15982411c6347adc8bb73f9000f8667 416 Pfam PF04055 Radical SAM superfamily 138 310 4.5E-24 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RMA_RS03170 c15982411c6347adc8bb73f9000f8667 416 SUPERFAMILY SSF102114 102 352 2.49E-54 T 22-04-2016 RMA_RS03170 c15982411c6347adc8bb73f9000f8667 416 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 10 391 1.1E-134 T 22-04-2016 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 RMA_RS03170 c15982411c6347adc8bb73f9000f8667 416 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 137 157 - T 22-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RMA_RS03170 c15982411c6347adc8bb73f9000f8667 416 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 9 411 8.1E-110 T 22-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 RMA_RS03170 c15982411c6347adc8bb73f9000f8667 416 PANTHER PTHR11918 9 412 1.6E-121 T 22-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RMA_RS03170 c15982411c6347adc8bb73f9000f8667 416 SMART SM00729 133 351 2.7E-54 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RMA_RS03305 807488e371c973988dab017221fc3bc2 141 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 5 140 2.0E-56 T 22-04-2016 IPR020143 Uncharacterised protein family, RP436 RMA_RS02440 9800abe008a23a3ae172b573e064c4cd 140 Pfam PF05299 M61 glycyl aminopeptidase 7 70 4.7E-10 T 22-04-2016 IPR007963 Peptidase M61, catalytic domain RMA_RS02440 9800abe008a23a3ae172b573e064c4cd 140 SUPERFAMILY SSF55486 2 113 3.81E-11 T 22-04-2016 RMA_RS07045 c6b3b167e9be971269b7974069a31c98 105 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 15 89 2.3E-20 T 22-04-2016 IPR003746 Protein of unknown function DUF167 RMA_RS07045 c6b3b167e9be971269b7974069a31c98 105 Hamap MF_00634 UPF0235 protein YggU [yggU]. 10 102 17.401 T 22-04-2016 IPR003746 Protein of unknown function DUF167 RMA_RS07045 c6b3b167e9be971269b7974069a31c98 105 SUPERFAMILY SSF69786 4 103 3.92E-23 T 22-04-2016 IPR003746 Protein of unknown function DUF167 RMA_RS07045 c6b3b167e9be971269b7974069a31c98 105 SMART SM01152 10 90 1.1E-20 T 22-04-2016 IPR003746 Protein of unknown function DUF167 RMA_RS07045 c6b3b167e9be971269b7974069a31c98 105 Gene3D G3DSA:3.30.1200.10 7 104 1.5E-21 T 22-04-2016 IPR003746 Protein of unknown function DUF167 RMA_RS05970 219aaeeaadef91fa3f859b8db98e9561 221 Pfam PF00005 ABC transporter 25 168 4.2E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS05970 219aaeeaadef91fa3f859b8db98e9561 221 SUPERFAMILY SSF52540 6 218 1.69E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05970 219aaeeaadef91fa3f859b8db98e9561 221 Gene3D G3DSA:3.40.50.300 2 216 8.4E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS05970 219aaeeaadef91fa3f859b8db98e9561 221 PANTHER PTHR24220 7 219 9.3E-90 T 22-04-2016 RMA_RS05970 219aaeeaadef91fa3f859b8db98e9561 221 SMART SM00382 34 217 4.8E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS05970 219aaeeaadef91fa3f859b8db98e9561 221 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS05970 219aaeeaadef91fa3f859b8db98e9561 221 PANTHER PTHR24220:SF111 7 219 9.3E-90 T 22-04-2016 RMA_RS06845 c1c1adb44726aad4400633fd6d694c3d 143 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 16 138 30.026 T 22-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RMA_RS06845 c1c1adb44726aad4400633fd6d694c3d 143 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 97 131 1.4E-12 T 22-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RMA_RS06845 c1c1adb44726aad4400633fd6d694c3d 143 SUPERFAMILY SSF109635 7 98 6.41E-30 T 22-04-2016 RMA_RS06845 c1c1adb44726aad4400633fd6d694c3d 143 SUPERFAMILY SSF57716 99 136 1.23E-9 T 22-04-2016 RMA_RS06845 c1c1adb44726aad4400633fd6d694c3d 143 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 20 129 9.7E-46 T 22-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RMA_RS06845 c1c1adb44726aad4400633fd6d694c3d 143 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 102 126 - T 22-04-2016 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RMA_RS06845 c1c1adb44726aad4400633fd6d694c3d 143 PANTHER PTHR33823:SF2 1 135 7.9E-42 T 22-04-2016 RMA_RS06845 c1c1adb44726aad4400633fd6d694c3d 143 PANTHER PTHR33823 1 135 7.9E-42 T 22-04-2016 RMA_RS00395 db9304cc644387f3c655fa050fbe03b3 54 SUPERFAMILY SSF53335 2 54 1.2E-12 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS00395 db9304cc644387f3c655fa050fbe03b3 54 Pfam PF00145 C-5 cytosine-specific DNA methylase 2 54 2.0E-16 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS00395 db9304cc644387f3c655fa050fbe03b3 54 Gene3D G3DSA:3.40.50.150 5 54 2.0E-13 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS03145 222af85f0ac6efe92c6202544d76c07b 134 Gene3D G3DSA:1.20.1600.10 34 134 8.5E-17 T 22-04-2016 RMA_RS03145 222af85f0ac6efe92c6202544d76c07b 134 SUPERFAMILY SSF56954 25 134 3.14E-15 T 22-04-2016 RMA_RS03145 222af85f0ac6efe92c6202544d76c07b 134 PANTHER PTHR30203 34 134 1.4E-12 T 22-04-2016 RMA_RS03145 222af85f0ac6efe92c6202544d76c07b 134 PANTHER PTHR30203:SF7 34 134 1.4E-12 T 22-04-2016 RMA_RS06750 792e74321b6b0f0a8dc9cfbc57db0583 108 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 5 107 21.783 T 22-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RMA_RS06750 792e74321b6b0f0a8dc9cfbc57db0583 108 SUPERFAMILY SSF81301 5 107 1.14E-29 T 22-04-2016 RMA_RS06750 792e74321b6b0f0a8dc9cfbc57db0583 108 Gene3D G3DSA:3.30.460.10 5 107 5.0E-31 T 22-04-2016 RMA_RS06750 792e74321b6b0f0a8dc9cfbc57db0583 108 PANTHER PTHR21043 2 106 5.8E-27 T 22-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RMA_RS06750 792e74321b6b0f0a8dc9cfbc57db0583 108 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 11 106 1.4E-30 T 22-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RMA_RS06750 792e74321b6b0f0a8dc9cfbc57db0583 108 Pfam PF02410 Ribosomal silencing factor during starvation 12 106 2.6E-24 T 22-04-2016 RMA_RS01705 59dbe97888ddb833bd8c96cecd200ffe 221 Pfam PF10858 Protein of unknown function (DUF2659) 1 220 8.8E-110 T 22-04-2016 IPR022588 Protein of unknown function DUF2659 RMA_RS01705 59dbe97888ddb833bd8c96cecd200ffe 221 ProDom PD209044 TRANSMEMBRANE RP231 MEMBRANE 1 220 3.0E-97 T 22-04-2016 IPR022588 Protein of unknown function DUF2659 RMA_RS01590 0b10496fddbe7d781aafe8a3358ce02c 80 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 68 9.6E-14 T 22-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RMA_RS01590 0b10496fddbe7d781aafe8a3358ce02c 80 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 7 54 5.3E-6 T 22-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RMA_RS01590 0b10496fddbe7d781aafe8a3358ce02c 80 SUPERFAMILY SSF143120 1 78 4.05E-19 T 22-04-2016 RMA_RS01590 0b10496fddbe7d781aafe8a3358ce02c 80 PANTHER PTHR33713:SF6 1 69 1.3E-13 T 22-04-2016 RMA_RS01590 0b10496fddbe7d781aafe8a3358ce02c 80 PANTHER PTHR33713 1 69 1.3E-13 T 22-04-2016 RMA_RS00945 8a78650f3014860035220a5b28deff20 125 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 13 114 4.1E-14 T 22-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 RMA_RS00945 8a78650f3014860035220a5b28deff20 125 SUPERFAMILY SSF81343 14 122 1.26E-27 T 22-04-2016 RMA_RS00945 8a78650f3014860035220a5b28deff20 125 Gene3D G3DSA:1.20.1300.10 11 122 8.6E-30 T 22-04-2016 RMA_RS00945 8a78650f3014860035220a5b28deff20 125 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 18 122 3.8E-28 T 22-04-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 RMA_RS02560 568e23caacd0dfad6016068e6938b86b 390 Pfam PF00534 Glycosyl transferases group 1 198 361 2.8E-31 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 RMA_RS02560 568e23caacd0dfad6016068e6938b86b 390 Gene3D G3DSA:3.40.50.2000 160 361 4.4E-24 T 22-04-2016 RMA_RS02560 568e23caacd0dfad6016068e6938b86b 390 PANTHER PTHR12526 9 386 3.6E-58 T 22-04-2016 RMA_RS02560 568e23caacd0dfad6016068e6938b86b 390 SUPERFAMILY SSF53756 14 387 1.66E-78 T 22-04-2016 RMA_RS02560 568e23caacd0dfad6016068e6938b86b 390 Pfam PF13439 Glycosyltransferase Family 4 25 178 1.9E-28 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 Pfam PF04542 Sigma-70 region 2 53 121 9.2E-15 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 287 49.07 T 22-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 SUPERFAMILY SSF88659 192 287 7.06E-14 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 PANTHER PTHR30376 2 285 9.2E-89 T 22-04-2016 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 Pfam PF04545 Sigma-70, region 4 232 283 2.1E-11 T 22-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 Pfam PF00140 Sigma-70 factor, region 1.2 19 46 1.5E-5 T 22-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 PIRSF PIRSF000770 3 291 4.6E-33 T 22-04-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 284 8.8E-25 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 Gene3D G3DSA:1.10.601.10 18 119 1.1E-36 T 22-04-2016 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 16 286 3.6E-111 T 22-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 PRINTS PR00046 Major sigma-70 factor signature 77 90 3.5E-18 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 PRINTS PR00046 Major sigma-70 factor signature 270 281 3.5E-18 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 PRINTS PR00046 Major sigma-70 factor signature 255 270 3.5E-18 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 PRINTS PR00046 Major sigma-70 factor signature 236 248 3.5E-18 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 PRINTS PR00046 Major sigma-70 factor signature 101 109 3.5E-18 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 Gene3D G3DSA:1.10.10.10 226 284 9.9E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RMA_RS02245 dc4e1d5a1b5f3e50e87ca280d306bacf 293 SUPERFAMILY SSF88946 12 121 3.61E-37 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RMA_RS02155 40f47b96a9271c7e9da380c5368e7a27 334 Gene3D G3DSA:3.40.50.300 145 322 1.2E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02155 40f47b96a9271c7e9da380c5368e7a27 334 Pfam PF00437 Type II/IV secretion system protein 13 311 1.6E-95 T 22-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RMA_RS02155 40f47b96a9271c7e9da380c5368e7a27 334 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 21 324 7.9E-118 T 22-04-2016 IPR014155 Type IV secretion system protein VirB11 GO:0005737|GO:0006810|GO:0009405 RMA_RS02155 40f47b96a9271c7e9da380c5368e7a27 334 Gene3D G3DSA:3.30.450.90 12 108 7.1E-31 T 22-04-2016 RMA_RS02155 40f47b96a9271c7e9da380c5368e7a27 334 SUPERFAMILY SSF52540 14 316 3.5E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02155 40f47b96a9271c7e9da380c5368e7a27 334 PANTHER PTHR30258:SF12 148 322 6.1E-65 T 22-04-2016 RMA_RS02155 40f47b96a9271c7e9da380c5368e7a27 334 PANTHER PTHR30258:SF12 12 126 6.1E-65 T 22-04-2016 RMA_RS02155 40f47b96a9271c7e9da380c5368e7a27 334 PANTHER PTHR30258 148 322 6.1E-65 T 22-04-2016 RMA_RS02155 40f47b96a9271c7e9da380c5368e7a27 334 PANTHER PTHR30258 12 126 6.1E-65 T 22-04-2016 RMA_RS01065 236caf312d34ad1820a096dab94c828d 241 SUPERFAMILY SSF53850 22 240 5.26E-55 T 22-04-2016 RMA_RS01065 236caf312d34ad1820a096dab94c828d 241 PANTHER PTHR18966:SF191 22 241 3.9E-36 T 22-04-2016 RMA_RS01065 236caf312d34ad1820a096dab94c828d 241 SMART SM00079 24 241 1.3E-4 T 22-04-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 RMA_RS01065 236caf312d34ad1820a096dab94c828d 241 PANTHER PTHR18966 22 241 3.9E-36 T 22-04-2016 RMA_RS01065 236caf312d34ad1820a096dab94c828d 241 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 25 241 3.2E-50 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RMA_RS01065 236caf312d34ad1820a096dab94c828d 241 Gene3D G3DSA:3.40.190.10 198 241 1.1E-37 T 22-04-2016 RMA_RS01065 236caf312d34ad1820a096dab94c828d 241 Gene3D G3DSA:3.40.190.10 21 98 1.1E-37 T 22-04-2016 RMA_RS01065 236caf312d34ad1820a096dab94c828d 241 Gene3D G3DSA:3.40.190.10 99 195 1.3E-11 T 22-04-2016 RMA_RS01065 236caf312d34ad1820a096dab94c828d 241 SMART SM00062 24 240 4.4E-59 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RMA_RS06225 468bee4ed31ca0279f623484b1fd13be 47 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 6 44 7.2E-5 T 22-04-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 RMA_RS06225 468bee4ed31ca0279f623484b1fd13be 47 SUPERFAMILY SSF50118 5 47 1.68E-6 T 22-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor RMA_RS06225 468bee4ed31ca0279f623484b1fd13be 47 Gene3D G3DSA:2.30.30.110 5 47 1.6E-6 T 22-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor RMA_RS04245 44930c3bb871d85dc2341c7e8a7b014c 335 SUPERFAMILY SSF103025 191 262 4.71E-40 T 22-04-2016 RMA_RS04245 44930c3bb871d85dc2341c7e8a7b014c 335 SUPERFAMILY SSF103025 4 37 4.71E-40 T 22-04-2016 RMA_RS04245 44930c3bb871d85dc2341c7e8a7b014c 335 SUPERFAMILY SSF103025 68 158 4.71E-40 T 22-04-2016 RMA_RS04245 44930c3bb871d85dc2341c7e8a7b014c 335 PANTHER PTHR22602:SF0 57 184 8.8E-61 T 22-04-2016 RMA_RS04245 44930c3bb871d85dc2341c7e8a7b014c 335 PANTHER PTHR22602:SF0 1 33 8.8E-61 T 22-04-2016 RMA_RS04245 44930c3bb871d85dc2341c7e8a7b014c 335 PANTHER PTHR22602:SF0 206 318 8.8E-61 T 22-04-2016 RMA_RS04245 44930c3bb871d85dc2341c7e8a7b014c 335 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 216 271 7.1E-19 T 22-04-2016 IPR017703 YgfZ/GcvT conserved site RMA_RS04245 44930c3bb871d85dc2341c7e8a7b014c 335 Gene3D G3DSA:3.30.70.1400 8 122 3.4E-15 T 22-04-2016 RMA_RS04245 44930c3bb871d85dc2341c7e8a7b014c 335 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 246 333 1.1E-10 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RMA_RS04245 44930c3bb871d85dc2341c7e8a7b014c 335 TIGRFAM TIGR03774 RPE2: rickettsial palindromic element RPE2 domain 34 66 5.3E-20 T 22-04-2016 IPR022436 Rickettsia palindromic element RPE2 RMA_RS04245 44930c3bb871d85dc2341c7e8a7b014c 335 PANTHER PTHR22602 57 184 8.8E-61 T 22-04-2016 RMA_RS04245 44930c3bb871d85dc2341c7e8a7b014c 335 PANTHER PTHR22602 1 33 8.8E-61 T 22-04-2016 RMA_RS04245 44930c3bb871d85dc2341c7e8a7b014c 335 PANTHER PTHR22602 206 318 8.8E-61 T 22-04-2016 RMA_RS01780 97755ca9a62184f8cd06d99bef0c9d59 231 Hamap MF_00664 Phosphatidylserine decarboxylase proenzyme [psd]. 10 219 38.065 T 22-04-2016 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RMA_RS01780 97755ca9a62184f8cd06d99bef0c9d59 231 TIGRFAM TIGR00164 PS_decarb_rel: phosphatidylserine decarboxylase homolog 10 218 1.7E-56 T 22-04-2016 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RMA_RS01780 97755ca9a62184f8cd06d99bef0c9d59 231 Pfam PF02666 Phosphatidylserine decarboxylase 45 215 4.4E-29 T 22-04-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RMA_RS01780 97755ca9a62184f8cd06d99bef0c9d59 231 PANTHER PTHR35809 1 222 2.5E-72 T 22-04-2016 RMA_RS06320 54ed6d61e9a4324d91c673a72c7ce182 164 SUPERFAMILY SSF47413 28 95 7.19E-5 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RMA_RS06320 54ed6d61e9a4324d91c673a72c7ce182 164 SMART SM00530 35 91 0.0051 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RMA_RS06320 54ed6d61e9a4324d91c673a72c7ce182 164 Gene3D G3DSA:1.10.260.40 34 95 6.0E-6 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RMA_RS07015 70020a9767a07c55f98579a0a794edf8 152 Pfam PF00436 Single-strand binding protein family 5 108 8.3E-37 T 22-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 RMA_RS07015 70020a9767a07c55f98579a0a794edf8 152 SUPERFAMILY SSF50249 4 152 2.98E-44 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS07015 70020a9767a07c55f98579a0a794edf8 152 PANTHER PTHR10302 1 121 4.4E-41 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RMA_RS07015 70020a9767a07c55f98579a0a794edf8 152 PANTHER PTHR10302:SF0 1 121 4.4E-41 T 22-04-2016 RMA_RS07015 70020a9767a07c55f98579a0a794edf8 152 PIRSF PIRSF002070 1 151 2.1E-33 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RMA_RS07015 70020a9767a07c55f98579a0a794edf8 152 Gene3D G3DSA:2.40.50.140 2 152 1.2E-47 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS07015 70020a9767a07c55f98579a0a794edf8 152 Hamap MF_00984 Single-stranded DNA-binding protein. 5 118 33.71 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RMA_RS07015 70020a9767a07c55f98579a0a794edf8 152 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 136 7.2E-40 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RMA_RS06270 58a54b4beaa42ae40af3e6e2c234cb18 58 Pfam PF08085 Entericidin EcnA/B family 21 41 3.9E-6 T 22-04-2016 IPR012556 Entericidin A/B GO:0009636|GO:0016020 RMA_RS03290 e59803b9e8a32760e073dc8219503d75 211 SMART SM00978 84 210 1.1E-10 T 22-04-2016 IPR007379 Tim44-like domain RMA_RS03290 e59803b9e8a32760e073dc8219503d75 211 ProDom PD111165 RP434 1 211 6.0E-116 T 22-04-2016 RMA_RS03290 e59803b9e8a32760e073dc8219503d75 211 SUPERFAMILY SSF54427 86 209 2.06E-10 T 22-04-2016 IPR032710 NTF2-like domain RMA_RS07340 0517851491e4aeac3b208d3bbf5aecaa 245 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 245 32.835 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS07340 0517851491e4aeac3b208d3bbf5aecaa 245 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 4 239 5.3E-56 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS07340 0517851491e4aeac3b208d3bbf5aecaa 245 SUPERFAMILY SSF55120 1 245 1.17E-82 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS07340 0517851491e4aeac3b208d3bbf5aecaa 245 PANTHER PTHR11142 1 245 1.2E-82 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS07340 0517851491e4aeac3b208d3bbf5aecaa 245 Gene3D G3DSA:3.30.70.660 107 242 8.5E-48 T 22-04-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS07340 0517851491e4aeac3b208d3bbf5aecaa 245 Pfam PF01416 tRNA pseudouridine synthase 8 104 5.0E-8 T 22-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS07340 0517851491e4aeac3b208d3bbf5aecaa 245 Pfam PF01416 tRNA pseudouridine synthase 144 245 3.1E-28 T 22-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS07340 0517851491e4aeac3b208d3bbf5aecaa 245 PANTHER PTHR11142:SF0 1 245 1.2E-82 T 22-04-2016 RMA_RS07340 0517851491e4aeac3b208d3bbf5aecaa 245 PIRSF PIRSF001430 1 245 7.3E-70 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS07340 0517851491e4aeac3b208d3bbf5aecaa 245 Gene3D G3DSA:3.30.70.580 1 106 1.2E-30 T 22-04-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RMA_RS05795 bcb2f8346429d65c8ea9b586e6faae79 73 Gene3D G3DSA:3.90.550.10 3 62 2.8E-6 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RMA_RS05795 bcb2f8346429d65c8ea9b586e6faae79 73 SUPERFAMILY SSF53448 17 72 2.42E-6 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RMA_RS03250 fcb032c2882f75b2b1b9f0a8cc9fdc3e 266 Gene3D G3DSA:3.40.30.10 99 261 5.8E-40 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS03250 fcb032c2882f75b2b1b9f0a8cc9fdc3e 266 PANTHER PTHR13887 34 264 6.4E-43 T 22-04-2016 RMA_RS03250 fcb032c2882f75b2b1b9f0a8cc9fdc3e 266 PANTHER PTHR13887:SF25 34 264 6.4E-43 T 22-04-2016 RMA_RS03250 fcb032c2882f75b2b1b9f0a8cc9fdc3e 266 Pfam PF01323 DSBA-like thioredoxin domain 113 255 2.0E-24 T 22-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 RMA_RS03250 fcb032c2882f75b2b1b9f0a8cc9fdc3e 266 SUPERFAMILY SSF52833 92 258 1.43E-33 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS02960 6f11b97965f82798b366aec6368f0994 414 PANTHER PTHR12778 15 406 6.2E-76 T 22-04-2016 RMA_RS02960 6f11b97965f82798b366aec6368f0994 414 SUPERFAMILY SSF103473 11 410 4.19E-36 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS02960 6f11b97965f82798b366aec6368f0994 414 Pfam PF07690 Major Facilitator Superfamily 15 241 1.8E-13 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RMA_RS02960 6f11b97965f82798b366aec6368f0994 414 Gene3D G3DSA:1.20.1250.20 11 201 8.1E-15 T 22-04-2016 RMA_RS02960 6f11b97965f82798b366aec6368f0994 414 Gene3D G3DSA:1.20.1250.20 233 410 2.3E-15 T 22-04-2016 RMA_RS07380 f83a5f1958836f60ab272aa703b6d8fa 279 PRINTS PR00073 Coprogen oxidase signature 264 279 5.7E-46 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS07380 f83a5f1958836f60ab272aa703b6d8fa 279 PRINTS PR00073 Coprogen oxidase signature 236 263 5.7E-46 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS07380 f83a5f1958836f60ab272aa703b6d8fa 279 PRINTS PR00073 Coprogen oxidase signature 40 56 5.7E-46 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS07380 f83a5f1958836f60ab272aa703b6d8fa 279 PRINTS PR00073 Coprogen oxidase signature 164 193 5.7E-46 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS07380 f83a5f1958836f60ab272aa703b6d8fa 279 PRINTS PR00073 Coprogen oxidase signature 127 149 5.7E-46 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS07380 f83a5f1958836f60ab272aa703b6d8fa 279 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 168 192 - T 22-04-2016 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS07380 f83a5f1958836f60ab272aa703b6d8fa 279 PIRSF PIRSF000166 2 279 8.0E-114 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS07380 f83a5f1958836f60ab272aa703b6d8fa 279 PANTHER PTHR10755 12 278 6.5E-126 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS07380 f83a5f1958836f60ab272aa703b6d8fa 279 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 3 279 53.008 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS07380 f83a5f1958836f60ab272aa703b6d8fa 279 SUPERFAMILY SSF102886 5 278 2.09E-111 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS07380 f83a5f1958836f60ab272aa703b6d8fa 279 Gene3D G3DSA:3.40.1500.10 5 278 7.0E-112 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS07380 f83a5f1958836f60ab272aa703b6d8fa 279 Pfam PF01218 Coproporphyrinogen III oxidase 11 278 1.9E-97 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RMA_RS06455 82e2b523c97a64d2f2f29751c085d2cb 346 SUPERFAMILY SSF53067 150 336 1.02E-47 T 22-04-2016 RMA_RS06455 82e2b523c97a64d2f2f29751c085d2cb 346 PANTHER PTHR19375:SF117 9 329 4.2E-158 T 22-04-2016 RMA_RS06455 82e2b523c97a64d2f2f29751c085d2cb 346 PANTHER PTHR19375 9 329 4.2E-158 T 22-04-2016 RMA_RS06455 82e2b523c97a64d2f2f29751c085d2cb 346 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 3.7E-165 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RMA_RS06455 82e2b523c97a64d2f2f29751c085d2cb 346 Gene3D G3DSA:3.30.420.40 13 160 2.1E-39 T 22-04-2016 RMA_RS06455 82e2b523c97a64d2f2f29751c085d2cb 346 Pfam PF06723 MreB/Mbl protein 12 339 3.5E-147 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RMA_RS06455 82e2b523c97a64d2f2f29751c085d2cb 346 Gene3D G3DSA:3.90.640.10 188 262 1.2E-30 T 22-04-2016 RMA_RS06455 82e2b523c97a64d2f2f29751c085d2cb 346 SUPERFAMILY SSF53067 12 149 6.48E-36 T 22-04-2016 RMA_RS06455 82e2b523c97a64d2f2f29751c085d2cb 346 Gene3D G3DSA:3.30.420.40 266 319 4.9E-34 T 22-04-2016 RMA_RS06455 82e2b523c97a64d2f2f29751c085d2cb 346 Gene3D G3DSA:3.30.420.40 161 187 4.9E-34 T 22-04-2016 RMA_RS06455 82e2b523c97a64d2f2f29751c085d2cb 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 188 208 9.3E-58 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RMA_RS06455 82e2b523c97a64d2f2f29751c085d2cb 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 70 93 9.3E-58 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RMA_RS06455 82e2b523c97a64d2f2f29751c085d2cb 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 133 152 9.3E-58 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RMA_RS06455 82e2b523c97a64d2f2f29751c085d2cb 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 50 68 9.3E-58 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RMA_RS06455 82e2b523c97a64d2f2f29751c085d2cb 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 303 329 9.3E-58 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RMA_RS07395 63cedc4a305589cc2dbee5c848e29acc 145 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 4 145 1.4E-70 T 22-04-2016 IPR014351 Conserved hypothetical protein CHP00701 RMA_RS07395 63cedc4a305589cc2dbee5c848e29acc 145 PIRSF PIRSF004638 1 145 4.3E-54 T 22-04-2016 IPR005265 Uncharacterised protein family UPF0093 RMA_RS07395 63cedc4a305589cc2dbee5c848e29acc 145 Pfam PF03653 Uncharacterised protein family (UPF0093) 1 144 5.4E-56 T 22-04-2016 IPR005265 Uncharacterised protein family UPF0093 RMA_RS07395 63cedc4a305589cc2dbee5c848e29acc 145 PANTHER PTHR40255 3 144 2.6E-42 T 22-04-2016 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 83 511 2.0E-152 T 22-04-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 Gene3D G3DSA:2.40.50.100 352 387 2.3E-14 T 22-04-2016 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 Gene3D G3DSA:2.40.50.100 125 156 2.3E-14 T 22-04-2016 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 PANTHER PTHR30386 214 511 5.2E-110 T 22-04-2016 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 PANTHER PTHR30386 50 177 5.2E-110 T 22-04-2016 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 Pfam PF13533 Biotin-lipoyl like 132 160 3.4E-6 T 22-04-2016 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 SUPERFAMILY SSF51230 128 191 5.57E-5 T 22-04-2016 IPR011053 Single hybrid motif RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 PANTHER PTHR30386:SF3 214 511 5.2E-110 T 22-04-2016 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 PANTHER PTHR30386:SF3 50 177 5.2E-110 T 22-04-2016 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 Pfam PF13437 HlyD family secretion protein 355 477 1.0E-18 T 22-04-2016 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 ProSitePatterns PS00543 HlyD family secretion proteins signature. 475 497 - T 22-04-2016 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 367 388 7.77E-49 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 490 510 7.77E-49 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 400 424 7.77E-49 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 424 447 7.77E-49 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 134 154 7.77E-49 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 475 490 7.77E-49 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RMA_RS02335 436ff5ed9656205e1dd4cea468477910 511 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 92 115 7.77E-49 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RMA_RS00005 c44f9fc5705e54a342d9116ebf35f827 273 PANTHER PTHR31756:SF3 6 265 1.2E-75 T 22-04-2016 RMA_RS00005 c44f9fc5705e54a342d9116ebf35f827 273 Pfam PF03618 Kinase/pyrophosphorylase 6 261 1.6E-80 T 22-04-2016 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 RMA_RS00005 c44f9fc5705e54a342d9116ebf35f827 273 PANTHER PTHR31756 6 265 1.2E-75 T 22-04-2016 RMA_RS00005 c44f9fc5705e54a342d9116ebf35f827 273 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 4 267 52.526 T 22-04-2016 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein RMA_RS00820 1430889de2f68782b6e47b3362f15b0e 966 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 605 803 7.5E-20 T 22-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 RMA_RS07450 6e655f54d70a556203b682847f32e2f3 65 PANTHER PTHR23416 1 53 2.0E-18 T 22-04-2016 RMA_RS07450 6e655f54d70a556203b682847f32e2f3 65 Gene3D G3DSA:2.160.10.10 2 51 1.5E-4 T 22-04-2016 RMA_RS07450 6e655f54d70a556203b682847f32e2f3 65 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 24 61 1.2E-8 T 22-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RMA_RS07450 6e655f54d70a556203b682847f32e2f3 65 SUPERFAMILY SSF51161 1 53 7.07E-8 T 22-04-2016 IPR011004 Trimeric LpxA-like RMA_RS07450 6e655f54d70a556203b682847f32e2f3 65 PANTHER PTHR23416:SF8 1 53 2.0E-18 T 22-04-2016 RMA_RS05965 21fe6f061d46f1454e21ef70f6c6a7d1 415 Pfam PF02687 FtsX-like permease family 276 408 6.7E-19 T 22-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RMA_RS05965 21fe6f061d46f1454e21ef70f6c6a7d1 415 Pfam PF12704 MacB-like periplasmic core domain 28 214 2.0E-18 T 22-04-2016 IPR025857 MacB-like periplasmic core domain RMA_RS05965 21fe6f061d46f1454e21ef70f6c6a7d1 415 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 6 415 4.4E-153 T 22-04-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 RMA_RS05965 21fe6f061d46f1454e21ef70f6c6a7d1 415 PANTHER PTHR30489 10 415 4.6E-79 T 22-04-2016 RMA_RS05965 21fe6f061d46f1454e21ef70f6c6a7d1 415 PANTHER PTHR30489:SF8 10 415 4.6E-79 T 22-04-2016 RMA_RS04240 908d8c057ff1e93627ba27ea0a2bd765 263 PANTHER PTHR16255 18 252 7.3E-63 T 22-04-2016 RMA_RS04240 908d8c057ff1e93627ba27ea0a2bd765 263 Pfam PF02582 Uncharacterised ACR, YagE family COG1723 37 209 6.1E-43 T 22-04-2016 IPR003734 Domain of unknown function DUF155 RMA_RS04355 882d02d11e34f61b1f51615d98c2c6ab 501 PANTHER PTHR31187 9 499 8.9E-125 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RMA_RS04355 882d02d11e34f61b1f51615d98c2c6ab 501 TIGRFAM TIGR00769 AAA: ADP/ATP carrier protein family 18 496 1.4E-144 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RMA_RS04355 882d02d11e34f61b1f51615d98c2c6ab 501 Pfam PF03219 TLC ATP/ADP transporter 6 496 4.6E-202 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RMA_RS04355 882d02d11e34f61b1f51615d98c2c6ab 501 PANTHER PTHR31187:SF1 9 499 8.9E-125 T 22-04-2016 RMA_RS02540 a0bfb2b5bcb1a98b065a495e6111583e 604 Gene3D G3DSA:3.90.550.10 15 242 5.7E-50 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RMA_RS02540 a0bfb2b5bcb1a98b065a495e6111583e 604 Gene3D G3DSA:3.90.550.10 294 494 7.0E-47 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RMA_RS02540 a0bfb2b5bcb1a98b065a495e6111583e 604 SUPERFAMILY SSF53448 294 498 2.81E-49 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RMA_RS02540 a0bfb2b5bcb1a98b065a495e6111583e 604 SUPERFAMILY SSF53448 15 231 6.19E-51 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RMA_RS02540 a0bfb2b5bcb1a98b065a495e6111583e 604 Pfam PF00535 Glycosyl transferase family 2 296 419 5.3E-31 T 22-04-2016 IPR001173 Glycosyltransferase 2-like RMA_RS02540 a0bfb2b5bcb1a98b065a495e6111583e 604 Pfam PF00535 Glycosyl transferase family 2 17 126 4.9E-26 T 22-04-2016 IPR001173 Glycosyltransferase 2-like RMA_RS02540 a0bfb2b5bcb1a98b065a495e6111583e 604 PANTHER PTHR22916 15 230 8.2E-45 T 22-04-2016 RMA_RS03225 60c859c715686ae95efe0aa2b28c4771 480 PANTHER PTHR24423 60 85 1.6E-47 T 22-04-2016 RMA_RS03225 60c859c715686ae95efe0aa2b28c4771 480 PANTHER PTHR24423 252 479 1.6E-47 T 22-04-2016 RMA_RS03225 60c859c715686ae95efe0aa2b28c4771 480 Pfam PF00512 His Kinase A (phospho-acceptor) domain 274 330 8.7E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS03225 60c859c715686ae95efe0aa2b28c4771 480 SUPERFAMILY SSF47384 259 330 9.02E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS03225 60c859c715686ae95efe0aa2b28c4771 480 SMART SM00387 370 480 2.7E-22 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS03225 60c859c715686ae95efe0aa2b28c4771 480 SMART SM00388 273 331 1.1E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS03225 60c859c715686ae95efe0aa2b28c4771 480 Gene3D G3DSA:3.30.565.10 354 478 2.4E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS03225 60c859c715686ae95efe0aa2b28c4771 480 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 373 478 6.6E-16 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS03225 60c859c715686ae95efe0aa2b28c4771 480 SUPERFAMILY SSF55874 323 479 1.09E-26 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS03225 60c859c715686ae95efe0aa2b28c4771 480 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 458 1.9E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RMA_RS03225 60c859c715686ae95efe0aa2b28c4771 480 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 418 1.9E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RMA_RS03225 60c859c715686ae95efe0aa2b28c4771 480 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 432 1.9E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RMA_RS03225 60c859c715686ae95efe0aa2b28c4771 480 PRINTS PR00344 Bacterial sensor protein C-terminal signature 465 478 1.9E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RMA_RS03225 60c859c715686ae95efe0aa2b28c4771 480 Gene3D G3DSA:1.10.287.130 264 327 2.8E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RMA_RS03225 60c859c715686ae95efe0aa2b28c4771 480 TIGRFAM TIGR03775 RPE3: rickettsial palindromic element RPE3 domain 13 53 5.0E-18 T 22-04-2016 IPR022437 Rickettsia palindromic element RPE3 RMA_RS03435 a0293d875f2904b38d72db7291a8bd65 64 SUPERFAMILY SSF51161 2 61 3.24E-12 T 22-04-2016 IPR011004 Trimeric LpxA-like RMA_RS03435 a0293d875f2904b38d72db7291a8bd65 64 Gene3D G3DSA:2.160.10.10 4 60 5.7E-12 T 22-04-2016 RMA_RS03435 a0293d875f2904b38d72db7291a8bd65 64 PANTHER PTHR13061 1 60 2.3E-20 T 22-04-2016 RMA_RS01495 023b4cfe9b73c635ccfe2936237dbbe8 71 Gene3D G3DSA:1.10.10.600 1 64 1.0E-17 T 22-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 RMA_RS01495 023b4cfe9b73c635ccfe2936237dbbe8 71 Pfam PF04384 Iron-sulphur cluster assembly 1 62 9.0E-16 T 22-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 RMA_RS01495 023b4cfe9b73c635ccfe2936237dbbe8 71 SUPERFAMILY SSF140319 1 62 2.88E-14 T 22-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 RMA_RS03380 66512da9395d3a66b1b5ba73829338d6 281 PANTHER PTHR22916 4 232 2.4E-58 T 22-04-2016 RMA_RS03380 66512da9395d3a66b1b5ba73829338d6 281 PANTHER PTHR22916:SF28 4 232 2.4E-58 T 22-04-2016 RMA_RS03380 66512da9395d3a66b1b5ba73829338d6 281 SUPERFAMILY SSF53448 6 230 1.18E-63 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RMA_RS03380 66512da9395d3a66b1b5ba73829338d6 281 Pfam PF00535 Glycosyl transferase family 2 9 121 1.6E-30 T 22-04-2016 IPR001173 Glycosyltransferase 2-like RMA_RS03380 66512da9395d3a66b1b5ba73829338d6 281 Gene3D G3DSA:3.90.550.10 6 229 1.1E-60 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RMA_RS05985 cc2d63d04ea20afc084c59d7e1f39c97 552 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 271 547 1.2E-39 T 22-04-2016 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal RMA_RS05985 cc2d63d04ea20afc084c59d7e1f39c97 552 Pfam PF01578 Cytochrome C assembly protein 2 207 6.2E-32 T 22-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RMA_RS05985 cc2d63d04ea20afc084c59d7e1f39c97 552 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 35 52 8.5E-55 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS05985 cc2d63d04ea20afc084c59d7e1f39c97 552 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 122 148 8.5E-55 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS05985 cc2d63d04ea20afc084c59d7e1f39c97 552 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 156 176 8.5E-55 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS05985 cc2d63d04ea20afc084c59d7e1f39c97 552 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 186 206 8.5E-55 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS05985 cc2d63d04ea20afc084c59d7e1f39c97 552 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 222 241 8.5E-55 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS05985 cc2d63d04ea20afc084c59d7e1f39c97 552 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 206 222 8.5E-55 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS05985 cc2d63d04ea20afc084c59d7e1f39c97 552 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 62 84 8.5E-55 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS05985 cc2d63d04ea20afc084c59d7e1f39c97 552 PANTHER PTHR30009:SF0 1 97 1.8E-86 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS05985 cc2d63d04ea20afc084c59d7e1f39c97 552 PANTHER PTHR30009:SF0 117 346 1.8E-86 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS05985 cc2d63d04ea20afc084c59d7e1f39c97 552 PANTHER PTHR30009:SF0 382 547 1.8E-86 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RMA_RS05985 cc2d63d04ea20afc084c59d7e1f39c97 552 PANTHER PTHR30009 1 97 1.8E-86 T 22-04-2016 RMA_RS05985 cc2d63d04ea20afc084c59d7e1f39c97 552 PANTHER PTHR30009 117 346 1.8E-86 T 22-04-2016 RMA_RS05985 cc2d63d04ea20afc084c59d7e1f39c97 552 PANTHER PTHR30009 382 547 1.8E-86 T 22-04-2016 RMA_RS02720 213495864598ad60fbf64704e40977ae 64 TIGRFAM TIGR03777 RPE4: rickettsial palindromic element RPE4 domain 10 41 3.0E-10 T 22-04-2016 IPR022439 Rickettsia palindromic element RPE4 RMA_RS04020 fa557eaebf835ce6e45572974443e4a1 219 PANTHER PTHR21262 18 196 1.6E-25 T 22-04-2016 RMA_RS04020 fa557eaebf835ce6e45572974443e4a1 219 PANTHER PTHR21262:SF0 18 196 1.6E-25 T 22-04-2016 RMA_RS04020 fa557eaebf835ce6e45572974443e4a1 219 Pfam PF13328 HD domain 45 184 4.4E-22 T 22-04-2016 IPR003607 HD/PDEase domain RMA_RS04020 fa557eaebf835ce6e45572974443e4a1 219 SUPERFAMILY SSF109604 23 202 1.29E-42 T 22-04-2016 RMA_RS04335 d1d72828a50ae6a862eed14cc1bcc2bc 213 PANTHER PTHR30086:SF0 5 210 4.6E-62 T 22-04-2016 RMA_RS04335 d1d72828a50ae6a862eed14cc1bcc2bc 213 Pfam PF01810 LysE type translocator 19 202 8.0E-23 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RMA_RS04335 d1d72828a50ae6a862eed14cc1bcc2bc 213 PANTHER PTHR30086 5 210 4.6E-62 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RMA_RS02710 d4174b47b0d859285a5a0f16a1586cab 335 ProDom PD210175 RP364 RP363 102 335 3.0E-88 T 22-04-2016 IPR020168 Uncharacterised protein family RP364 RMA_RS06025 18cd2008e5c6365d5eb231c47981a5d7 95 SMART SM00411 3 91 5.6E-20 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RMA_RS06025 18cd2008e5c6365d5eb231c47981a5d7 95 SUPERFAMILY SSF47729 3 92 3.53E-19 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RMA_RS06025 18cd2008e5c6365d5eb231c47981a5d7 95 Gene3D G3DSA:4.10.520.10 4 92 9.0E-19 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RMA_RS06025 18cd2008e5c6365d5eb231c47981a5d7 95 Pfam PF00216 Bacterial DNA-binding protein 4 91 1.4E-17 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RMA_RS06025 18cd2008e5c6365d5eb231c47981a5d7 95 PANTHER PTHR33175 3 91 5.8E-14 T 22-04-2016 RMA_RS02085 8c878cc62556f1b511a14aab9e464030 366 PANTHER PTHR30474:SF1 1 360 3.4E-128 T 22-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 RMA_RS02085 8c878cc62556f1b511a14aab9e464030 366 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 14 360 7.6E-125 T 22-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 RMA_RS02085 8c878cc62556f1b511a14aab9e464030 366 Pfam PF01098 Cell cycle protein 16 360 1.4E-96 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RMA_RS02085 8c878cc62556f1b511a14aab9e464030 366 PANTHER PTHR30474 1 360 3.4E-128 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RMA_RS06005 f527c9a6b283c88a7eb65fa22d086100 201 SUPERFAMILY SSF81301 4 139 1.41E-38 T 22-04-2016 RMA_RS06005 f527c9a6b283c88a7eb65fa22d086100 201 SMART SM00954 24 135 1.2E-41 T 22-04-2016 IPR007685 RelA/SpoT GO:0015969 RMA_RS06005 f527c9a6b283c88a7eb65fa22d086100 201 Gene3D G3DSA:3.30.460.10 5 114 5.5E-32 T 22-04-2016 RMA_RS06005 f527c9a6b283c88a7eb65fa22d086100 201 Pfam PF04607 Region found in RelA / SpoT proteins 25 135 7.4E-29 T 22-04-2016 IPR007685 RelA/SpoT GO:0015969 RMA_RS06005 f527c9a6b283c88a7eb65fa22d086100 201 PANTHER PTHR21262 5 149 5.5E-34 T 22-04-2016 RMA_RS01080 a209b3b7df3728f8605ed56c27fdabfd 100 PANTHER PTHR15004 1 100 1.3E-14 T 22-04-2016 RMA_RS01080 a209b3b7df3728f8605ed56c27fdabfd 100 PANTHER PTHR15004:SF0 1 100 1.3E-14 T 22-04-2016 RMA_RS01080 a209b3b7df3728f8605ed56c27fdabfd 100 SUPERFAMILY SSF141000 1 98 1.83E-21 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RMA_RS01080 a209b3b7df3728f8605ed56c27fdabfd 100 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 2 100 5.0E-19 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RMA_RS01080 a209b3b7df3728f8605ed56c27fdabfd 100 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 18 79 1.9E-11 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RMA_RS01080 a209b3b7df3728f8605ed56c27fdabfd 100 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 1 100 21.897 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RMA_RS02670 f067d2a358f6fea5e4d0e449695ad1c7 242 PANTHER PTHR10884 100 235 9.6E-64 T 22-04-2016 RMA_RS02670 f067d2a358f6fea5e4d0e449695ad1c7 242 PANTHER PTHR10884 3 64 9.6E-64 T 22-04-2016 RMA_RS02670 f067d2a358f6fea5e4d0e449695ad1c7 242 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 6 192 29.215 T 22-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 RMA_RS02670 f067d2a358f6fea5e4d0e449695ad1c7 242 PANTHER PTHR10884:SF6 100 235 9.6E-64 T 22-04-2016 RMA_RS02670 f067d2a358f6fea5e4d0e449695ad1c7 242 PANTHER PTHR10884:SF6 3 64 9.6E-64 T 22-04-2016 RMA_RS02670 f067d2a358f6fea5e4d0e449695ad1c7 242 SUPERFAMILY SSF143243 16 66 2.88E-48 T 22-04-2016 RMA_RS02670 f067d2a358f6fea5e4d0e449695ad1c7 242 SUPERFAMILY SSF143243 98 218 2.88E-48 T 22-04-2016 RMA_RS02670 f067d2a358f6fea5e4d0e449695ad1c7 242 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 116 171 5.0E-27 T 22-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 RMA_RS02670 f067d2a358f6fea5e4d0e449695ad1c7 242 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 31 185 5.3E-37 T 22-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 RMA_RS02670 f067d2a358f6fea5e4d0e449695ad1c7 242 TIGRFAM TIGR03774 RPE2: rickettsial palindromic element RPE2 domain 67 101 2.4E-24 T 22-04-2016 IPR022436 Rickettsia palindromic element RPE2 RMA_RS03160 118eedf211e5fc7b1168b07c60500624 181 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 4 180 4.2E-18 T 22-04-2016 IPR010106 Conserved hypothetical protein CHP01784 RMA_RS03160 118eedf211e5fc7b1168b07c60500624 181 Pfam PF12784 PD-(D/E)XK nuclease family transposase 4 130 1.4E-23 T 22-04-2016 RMA_RS02315 51c0b135d0c7371d1c48aaae7c87a7fa 143 PANTHER PTHR30558 1 137 2.2E-34 T 22-04-2016 RMA_RS02315 51c0b135d0c7371d1c48aaae7c87a7fa 143 TIGRFAM TIGR02801 tolR: protein TolR 17 136 6.0E-39 T 22-04-2016 IPR014168 Biopolymer transport, TolR GO:0015031|GO:0016021 RMA_RS02315 51c0b135d0c7371d1c48aaae7c87a7fa 143 Pfam PF02472 Biopolymer transport protein ExbD/TolR 18 135 4.6E-28 T 22-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RMA_RS02315 51c0b135d0c7371d1c48aaae7c87a7fa 143 PANTHER PTHR30558:SF7 1 137 2.2E-34 T 22-04-2016 RMA_RS00780 ea46edc665c0ced1de2a248b49e3520c 78 Pfam PF01197 Ribosomal protein L31 1 66 6.0E-14 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00780 ea46edc665c0ced1de2a248b49e3520c 78 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 68 5.5E-11 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00780 ea46edc665c0ced1de2a248b49e3520c 78 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 57 - T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00780 ea46edc665c0ced1de2a248b49e3520c 78 SUPERFAMILY SSF143800 1 70 8.24E-12 T 22-04-2016 RMA_RS03400 f87be48c5475fc9850e550c0c0bf2423 343 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 308 3.2E-58 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RMA_RS03400 f87be48c5475fc9850e550c0c0bf2423 343 SUPERFAMILY SSF53686 9 318 1.96E-70 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RMA_RS03400 f87be48c5475fc9850e550c0c0bf2423 343 PANTHER PTHR10314:SF36 9 323 2.1E-111 T 22-04-2016 RMA_RS03400 f87be48c5475fc9850e550c0c0bf2423 343 PANTHER PTHR10314 9 323 2.1E-111 T 22-04-2016 RMA_RS03400 f87be48c5475fc9850e550c0c0bf2423 343 Gene3D G3DSA:3.40.50.1100 76 324 6.2E-49 T 22-04-2016 RMA_RS04420 77b4f96b02121d7c73aab3f1a806b593 372 PANTHER PTHR11601:SF45 1 366 1.1E-107 T 22-04-2016 RMA_RS04420 77b4f96b02121d7c73aab3f1a806b593 372 SUPERFAMILY SSF53383 1 367 1.02E-82 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RMA_RS04420 77b4f96b02121d7c73aab3f1a806b593 372 Gene3D G3DSA:3.40.640.10 14 240 1.0E-56 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RMA_RS04420 77b4f96b02121d7c73aab3f1a806b593 372 Pfam PF00266 Aminotransferase class-V 2 359 1.0E-51 T 22-04-2016 IPR000192 Aminotransferase class V domain RMA_RS04420 77b4f96b02121d7c73aab3f1a806b593 372 PIRSF PIRSF005572 1 370 2.3E-111 T 22-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RMA_RS04420 77b4f96b02121d7c73aab3f1a806b593 372 PANTHER PTHR11601 1 366 1.1E-107 T 22-04-2016 RMA_RS04420 77b4f96b02121d7c73aab3f1a806b593 372 Gene3D G3DSA:3.90.1150.10 241 366 5.7E-35 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RMA_RS04420 77b4f96b02121d7c73aab3f1a806b593 372 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 187 207 - T 22-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RMA_RS06085 128627537595f8f4f910c2a1dcec5863 149 Pfam PF02470 MlaD protein 37 114 1.2E-24 T 22-04-2016 IPR003399 Mce/MlaD RMA_RS06085 128627537595f8f4f910c2a1dcec5863 149 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 2 144 2.6E-48 T 22-04-2016 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 RMA_RS06085 128627537595f8f4f910c2a1dcec5863 149 PANTHER PTHR33371 1 143 1.2E-32 T 22-04-2016 RMA_RS00175 771533ba6eea92647877f310c5041510 74 Gene3D G3DSA:1.20.20.10 7 73 3.2E-20 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RMA_RS00175 771533ba6eea92647877f310c5041510 74 SUPERFAMILY SSF81333 4 73 7.45E-17 T 22-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RMA_RS00175 771533ba6eea92647877f310c5041510 74 PRINTS PR00124 ATP synthase C subunit signature 9 28 1.1E-18 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RMA_RS00175 771533ba6eea92647877f310c5041510 74 PRINTS PR00124 ATP synthase C subunit signature 30 45 1.1E-18 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RMA_RS00175 771533ba6eea92647877f310c5041510 74 PRINTS PR00124 ATP synthase C subunit signature 47 72 1.1E-18 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RMA_RS00175 771533ba6eea92647877f310c5041510 74 Hamap MF_01396 ATP synthase subunit c [atpH]. 7 74 13.362 T 22-04-2016 RMA_RS00175 771533ba6eea92647877f310c5041510 74 PANTHER PTHR10031 1 73 2.5E-16 T 22-04-2016 RMA_RS00175 771533ba6eea92647877f310c5041510 74 Pfam PF00137 ATP synthase subunit C 9 71 8.7E-11 T 22-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RMA_RS00175 771533ba6eea92647877f310c5041510 74 ProSitePatterns PS00605 ATP synthase c subunit signature. 37 58 - T 22-04-2016 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site RMA_RS06745 b7ebb27d32243fd464ab897807c96b08 575 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 286 2.4E-71 T 22-04-2016 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 RMA_RS06745 b7ebb27d32243fd464ab897807c96b08 575 Gene3D G3DSA:3.40.50.720 404 537 3.9E-28 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS06745 b7ebb27d32243fd464ab897807c96b08 575 Pfam PF00999 Sodium/hydrogen exchanger family 10 375 4.5E-63 T 22-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RMA_RS06745 b7ebb27d32243fd464ab897807c96b08 575 PANTHER PTHR16254:SF6 1 563 1.3E-166 T 22-04-2016 RMA_RS06745 b7ebb27d32243fd464ab897807c96b08 575 SUPERFAMILY SSF51735 405 546 1.21E-26 T 22-04-2016 IPR016040 NAD(P)-binding domain RMA_RS06745 b7ebb27d32243fd464ab897807c96b08 575 Pfam PF02254 TrkA-N domain 409 522 4.4E-18 T 22-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RMA_RS06745 b7ebb27d32243fd464ab897807c96b08 575 PANTHER PTHR16254 1 563 1.3E-166 T 22-04-2016 RMA_RS07265 be36f5e62728e08c6826e850904cbc60 254 SMART SM00849 35 203 0.0021 T 22-04-2016 IPR001279 Metallo-beta-lactamase RMA_RS07265 be36f5e62728e08c6826e850904cbc60 254 SUPERFAMILY SSF56281 3 254 1.27E-41 T 22-04-2016 IPR001279 Metallo-beta-lactamase RMA_RS07265 be36f5e62728e08c6826e850904cbc60 254 Pfam PF12706 Beta-lactamase superfamily domain 48 224 2.8E-23 T 22-04-2016 IPR001279 Metallo-beta-lactamase RMA_RS07265 be36f5e62728e08c6826e850904cbc60 254 Gene3D G3DSA:3.60.15.10 1 254 2.9E-66 T 22-04-2016 IPR001279 Metallo-beta-lactamase RMA_RS07265 be36f5e62728e08c6826e850904cbc60 254 PANTHER PTHR12553 3 249 4.0E-47 T 22-04-2016 RMA_RS07265 be36f5e62728e08c6826e850904cbc60 254 PANTHER PTHR12553:SF7 3 249 4.0E-47 T 22-04-2016 RMA_RS05110 3e34cf34876e398406c2fcaf29c573e2 87 SUPERFAMILY SSF109910 8 83 3.53E-22 T 22-04-2016 IPR005631 Flavinator of succinate dehydrogenase RMA_RS05110 3e34cf34876e398406c2fcaf29c573e2 87 Gene3D G3DSA:1.10.150.250 6 83 9.4E-25 T 22-04-2016 IPR005631 Flavinator of succinate dehydrogenase RMA_RS05110 3e34cf34876e398406c2fcaf29c573e2 87 PANTHER PTHR12469 13 86 1.9E-22 T 22-04-2016 RMA_RS05110 3e34cf34876e398406c2fcaf29c573e2 87 Pfam PF03937 Flavinator of succinate dehydrogenase 11 81 1.2E-20 T 22-04-2016 IPR005631 Flavinator of succinate dehydrogenase RMA_RS05110 3e34cf34876e398406c2fcaf29c573e2 87 PANTHER PTHR12469:SF2 13 86 1.9E-22 T 22-04-2016 RMA_RS02610 35bc71d47a825b3d5ad556d5d80b4bab 832 PANTHER PTHR30441 9 496 6.5E-20 T 22-04-2016 RMA_RS02610 35bc71d47a825b3d5ad556d5d80b4bab 832 PANTHER PTHR30441 524 753 6.5E-20 T 22-04-2016 RMA_RS02610 35bc71d47a825b3d5ad556d5d80b4bab 832 Pfam PF05170 AsmA family 1 707 1.7E-182 T 22-04-2016 IPR007844 AsmA RMA_RS07220 76f1385b4a112cffb2613a756f5418a5 93 Pfam PF01420 Type I restriction modification DNA specificity domain 14 82 8.8E-9 T 22-04-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 RMA_RS07220 76f1385b4a112cffb2613a756f5418a5 93 SUPERFAMILY SSF116734 11 84 4.58E-16 T 22-04-2016 RMA_RS01235 be1e6f32306792336acd5da988669ffb 399 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 30 45 - T 22-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 RMA_RS01235 be1e6f32306792336acd5da988669ffb 399 PANTHER PTHR11958:SF65 1 398 2.9E-280 T 22-04-2016 RMA_RS01235 be1e6f32306792336acd5da988669ffb 399 Pfam PF00375 Sodium:dicarboxylate symporter family 3 387 3.5E-122 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RMA_RS01235 be1e6f32306792336acd5da988669ffb 399 SUPERFAMILY SSF118215 3 388 5.1E-116 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RMA_RS01235 be1e6f32306792336acd5da988669ffb 399 PANTHER PTHR11958 1 398 2.9E-280 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RMA_RS01235 be1e6f32306792336acd5da988669ffb 399 PRINTS PR00173 Glutamate-aspartate symporter signature 68 93 1.6E-31 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RMA_RS01235 be1e6f32306792336acd5da988669ffb 399 PRINTS PR00173 Glutamate-aspartate symporter signature 315 334 1.6E-31 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RMA_RS01235 be1e6f32306792336acd5da988669ffb 399 PRINTS PR00173 Glutamate-aspartate symporter signature 1 21 1.6E-31 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RMA_RS01235 be1e6f32306792336acd5da988669ffb 399 PRINTS PR00173 Glutamate-aspartate symporter signature 280 306 1.6E-31 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RMA_RS01235 be1e6f32306792336acd5da988669ffb 399 PRINTS PR00173 Glutamate-aspartate symporter signature 342 362 1.6E-31 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RMA_RS01235 be1e6f32306792336acd5da988669ffb 399 Gene3D G3DSA:1.10.3860.10 2 394 9.3E-123 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RMA_RS04250 d78941a5ed49cdd7a006bbe7bb1e2db2 217 SUPERFAMILY SSF48403 120 203 6.63E-9 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain RMA_RS04250 d78941a5ed49cdd7a006bbe7bb1e2db2 217 SMART SM00248 171 200 0.0016 T 22-04-2016 IPR002110 Ankyrin repeat GO:0005515 RMA_RS04250 d78941a5ed49cdd7a006bbe7bb1e2db2 217 Gene3D G3DSA:1.25.40.20 121 211 3.4E-9 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain RMA_RS02165 f896099dede520d8f093cd9d8d435f8f 470 Gene3D G3DSA:3.30.420.40 1 118 5.3E-18 T 22-04-2016 RMA_RS02165 f896099dede520d8f093cd9d8d435f8f 470 SUPERFAMILY SSF53067 124 282 6.47E-22 T 22-04-2016 RMA_RS02165 f896099dede520d8f093cd9d8d435f8f 470 SUPERFAMILY SSF53067 2 119 2.22E-19 T 22-04-2016 RMA_RS02165 f896099dede520d8f093cd9d8d435f8f 470 Pfam PF02541 Ppx/GppA phosphatase family 25 282 6.4E-74 T 22-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 RMA_RS02165 f896099dede520d8f093cd9d8d435f8f 470 PANTHER PTHR30005 1 370 9.4E-24 T 22-04-2016 RMA_RS02165 f896099dede520d8f093cd9d8d435f8f 470 Gene3D G3DSA:3.30.420.150 125 281 6.2E-14 T 22-04-2016 RMA_RS05485 f420bdb9afd4e801955a7ba1a3bd3c15 136 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 117 2.1E-40 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05485 f420bdb9afd4e801955a7ba1a3bd3c15 136 PANTHER PTHR14413 1 123 4.2E-57 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05485 f420bdb9afd4e801955a7ba1a3bd3c15 136 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 24.308 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05485 f420bdb9afd4e801955a7ba1a3bd3c15 136 SUPERFAMILY SSF64263 1 119 2.49E-47 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05485 f420bdb9afd4e801955a7ba1a3bd3c15 136 Pfam PF01196 Ribosomal protein L17 20 116 1.3E-32 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05485 f420bdb9afd4e801955a7ba1a3bd3c15 136 Gene3D G3DSA:3.90.1030.10 1 117 2.0E-46 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05485 f420bdb9afd4e801955a7ba1a3bd3c15 136 PANTHER PTHR14413:SF5 1 123 4.2E-57 T 22-04-2016 RMA_RS05485 f420bdb9afd4e801955a7ba1a3bd3c15 136 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS00300 1bf3ffbf5180bf083ba087b585d41285 440 Pfam PF10871 Protein of unknown function (DUF2748) 1 440 2.0E-253 T 22-04-2016 IPR020183 Uncharacterised protein family RC0048 RMA_RS00300 1bf3ffbf5180bf083ba087b585d41285 440 ProDom PD216750 RP034 RC0048 19 440 0.0 T 22-04-2016 IPR020183 Uncharacterised protein family RC0048 RMA_RS06355 17e2663b3cff53ab2bababde4bf00581 115 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 8 50 3.4E-22 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS00480 54c11798773c5baadcb21a0cf34bedc7 429 Pfam PF07690 Major Facilitator Superfamily 30 351 2.3E-45 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RMA_RS00480 54c11798773c5baadcb21a0cf34bedc7 429 PANTHER PTHR11662 16 429 7.1E-119 T 22-04-2016 RMA_RS00480 54c11798773c5baadcb21a0cf34bedc7 429 PIRSF PIRSF002808 1 429 3.5E-147 T 22-04-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 RMA_RS00480 54c11798773c5baadcb21a0cf34bedc7 429 PANTHER PTHR11662:SF141 16 429 7.1E-119 T 22-04-2016 RMA_RS00480 54c11798773c5baadcb21a0cf34bedc7 429 Gene3D G3DSA:1.20.1250.20 236 426 8.7E-42 T 22-04-2016 RMA_RS00480 54c11798773c5baadcb21a0cf34bedc7 429 Gene3D G3DSA:1.20.1250.20 18 206 1.2E-44 T 22-04-2016 RMA_RS00480 54c11798773c5baadcb21a0cf34bedc7 429 SUPERFAMILY SSF103473 2 427 5.1E-81 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS02425 cf6c354b66592c5fd98d76df56161ab5 103 Pfam PF01491 Frataxin-like domain 1 99 1.5E-25 T 22-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RMA_RS02425 cf6c354b66592c5fd98d76df56161ab5 103 Hamap MF_00142 Protein CyaY [cyaY]. 1 103 17.395 T 22-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RMA_RS02425 cf6c354b66592c5fd98d76df56161ab5 103 PANTHER PTHR16821 1 95 8.7E-26 T 22-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RMA_RS02425 cf6c354b66592c5fd98d76df56161ab5 103 ProSitePatterns PS01344 Frataxin family signature. 49 63 - T 22-04-2016 IPR020895 Frataxin conserved site RMA_RS02425 cf6c354b66592c5fd98d76df56161ab5 103 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 2 98 8.6E-26 T 22-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RMA_RS02425 cf6c354b66592c5fd98d76df56161ab5 103 Gene3D G3DSA:3.30.920.10 1 100 2.2E-29 T 22-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RMA_RS02425 cf6c354b66592c5fd98d76df56161ab5 103 SUPERFAMILY SSF55387 1 99 9.59E-30 T 22-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RMA_RS02425 cf6c354b66592c5fd98d76df56161ab5 103 SMART SM01219 1 99 2.7E-36 T 22-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RMA_RS06675 74d4764dbd7581e4812fe7d688fb95a7 184 PANTHER PTHR11910 10 181 2.7E-32 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RMA_RS06675 74d4764dbd7581e4812fe7d688fb95a7 184 PRINTS PR00125 ATP synthase delta subunit signature 137 152 9.7E-18 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RMA_RS06675 74d4764dbd7581e4812fe7d688fb95a7 184 PRINTS PR00125 ATP synthase delta subunit signature 76 87 9.7E-18 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RMA_RS06675 74d4764dbd7581e4812fe7d688fb95a7 184 PRINTS PR00125 ATP synthase delta subunit signature 87 101 9.7E-18 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RMA_RS06675 74d4764dbd7581e4812fe7d688fb95a7 184 PRINTS PR00125 ATP synthase delta subunit signature 152 170 9.7E-18 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RMA_RS06675 74d4764dbd7581e4812fe7d688fb95a7 184 PRINTS PR00125 ATP synthase delta subunit signature 6 25 9.7E-18 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RMA_RS06675 74d4764dbd7581e4812fe7d688fb95a7 184 SUPERFAMILY SSF47928 6 107 1.06E-19 T 22-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain RMA_RS06675 74d4764dbd7581e4812fe7d688fb95a7 184 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 9 177 9.3E-32 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RMA_RS06675 74d4764dbd7581e4812fe7d688fb95a7 184 Pfam PF00213 ATP synthase delta (OSCP) subunit 8 177 5.4E-36 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RMA_RS06675 74d4764dbd7581e4812fe7d688fb95a7 184 Hamap MF_01416 ATP synthase subunit delta [atpD]. 2 179 16.603 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RMA_RS06675 74d4764dbd7581e4812fe7d688fb95a7 184 Gene3D G3DSA:1.10.520.20 8 107 5.3E-15 T 22-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain RMA_RS07505 584b720f146389d25cddd1878214bd09 173 ProDom PD531162 RC0050 1 36 2.0E-13 T 22-04-2016 RMA_RS03880 ed8498b3a626e43b9406fc5391ee87b6 68 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 57 7.5E-8 T 22-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RMA_RS03880 ed8498b3a626e43b9406fc5391ee87b6 68 SUPERFAMILY SSF143120 1 45 1.96E-6 T 22-04-2016 RMA_RS03880 ed8498b3a626e43b9406fc5391ee87b6 68 Gene3D G3DSA:3.40.1620.10 1 39 1.7E-4 T 22-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RMA_RS03880 ed8498b3a626e43b9406fc5391ee87b6 68 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 3 39 1.7E-5 T 22-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RMA_RS03300 1be523de48f28715526fc739b018d0ed 117 Pfam PF02033 Ribosome-binding factor A 11 117 3.9E-20 T 22-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RMA_RS03300 1be523de48f28715526fc739b018d0ed 117 PANTHER PTHR33515 8 117 3.1E-17 T 22-04-2016 RMA_RS03300 1be523de48f28715526fc739b018d0ed 117 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 9 116 5.5E-15 T 22-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RMA_RS03300 1be523de48f28715526fc739b018d0ed 117 ProSitePatterns PS01319 Ribosome-binding factor A signature. 83 104 - T 22-04-2016 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 RMA_RS03300 1be523de48f28715526fc739b018d0ed 117 SUPERFAMILY SSF89919 6 117 1.57E-27 T 22-04-2016 IPR023799 Ribosome-binding factor A domain RMA_RS03300 1be523de48f28715526fc739b018d0ed 117 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 13 104 1.0E-47 T 22-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RMA_RS03300 1be523de48f28715526fc739b018d0ed 117 Gene3D G3DSA:3.30.300.20 7 110 1.1E-22 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta RMA_RS02985 8d699545030db8aea37465147e83d64d 282 Pfam PF03239 Iron permease FTR1 family 1 270 4.0E-56 T 22-04-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 RMA_RS02985 8d699545030db8aea37465147e83d64d 282 PANTHER PTHR31632 1 274 1.3E-19 T 22-04-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 RMA_RS01140 45bedcd1a086d3e8435789bff955ed4e 228 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 26 227 29.736 T 22-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RMA_RS01140 45bedcd1a086d3e8435789bff955ed4e 228 PANTHER PTHR10920:SF20 15 228 6.8E-121 T 22-04-2016 RMA_RS01140 45bedcd1a086d3e8435789bff955ed4e 228 PIRSF PIRSF005461 11 228 2.3E-80 T 22-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RMA_RS01140 45bedcd1a086d3e8435789bff955ed4e 228 SUPERFAMILY SSF53335 45 227 5.36E-37 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS01140 45bedcd1a086d3e8435789bff955ed4e 228 Pfam PF01728 FtsJ-like methyltransferase 46 227 1.2E-58 T 22-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 RMA_RS01140 45bedcd1a086d3e8435789bff955ed4e 228 Gene3D G3DSA:3.40.50.150 14 228 8.8E-66 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS01140 45bedcd1a086d3e8435789bff955ed4e 228 PANTHER PTHR10920 15 228 6.8E-121 T 22-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RMA_RS00275 0fff3d31e76458251501bac0a95f6a48 222 Pfam PF02674 Colicin V production protein 5 130 2.8E-14 T 22-04-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 RMA_RS04845 56bdbda288b4c5354438d626feb19260 465 Pfam PF00474 Sodium:solute symporter family 51 404 1.5E-27 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RMA_RS04845 56bdbda288b4c5354438d626feb19260 465 PANTHER PTHR11819 4 465 7.6E-36 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RMA_RS01720 56da3628a080551125e870d60236410b 159 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 30 159 32.278 T 22-04-2016 IPR023035 Ribosomal protein S9, bacterial/plastid RMA_RS01720 56da3628a080551125e870d60236410b 159 ProSitePatterns PS00360 Ribosomal protein S9 signature. 98 116 - T 22-04-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 RMA_RS01720 56da3628a080551125e870d60236410b 159 Gene3D G3DSA:3.30.230.10 34 159 7.6E-48 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RMA_RS01720 56da3628a080551125e870d60236410b 159 SUPERFAMILY SSF54211 35 159 3.49E-46 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RMA_RS01720 56da3628a080551125e870d60236410b 159 Pfam PF00380 Ribosomal protein S9/S16 39 159 1.5E-45 T 22-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RMA_RS01720 56da3628a080551125e870d60236410b 159 PANTHER PTHR21569 9 159 1.2E-59 T 22-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RMA_RS01720 56da3628a080551125e870d60236410b 159 PANTHER PTHR21569:SF1 9 159 1.2E-59 T 22-04-2016 RMA_RS00335 a1df1e4386b49b915ea0e2adde85005c 90 ProDom PD512899 RC0057 1 84 9.0E-38 T 22-04-2016 RMA_RS02920 76bf0d2e9d9c88235e4c9a386cbfe183 322 PANTHER PTHR13504:SF32 33 249 1.1E-39 T 22-04-2016 RMA_RS02920 76bf0d2e9d9c88235e4c9a386cbfe183 322 PANTHER PTHR13504 33 249 1.1E-39 T 22-04-2016 RMA_RS02920 76bf0d2e9d9c88235e4c9a386cbfe183 322 SUPERFAMILY SSF140931 79 255 5.1E-39 T 22-04-2016 IPR003812 Fido domain RMA_RS02920 76bf0d2e9d9c88235e4c9a386cbfe183 322 Gene3D G3DSA:1.10.3290.10 34 256 2.4E-55 T 22-04-2016 IPR003812 Fido domain RMA_RS02920 76bf0d2e9d9c88235e4c9a386cbfe183 322 Pfam PF02661 Fic/DOC family 99 197 3.0E-20 T 22-04-2016 IPR003812 Fido domain RMA_RS02145 b86f749580c8856ce9f5f01e624e9c14 157 Pfam PF03524 Conjugal transfer protein 46 152 6.2E-31 T 22-04-2016 IPR010258 Conjugal transfer, TrbG/VirB9/CagX RMA_RS04025 6de24a25cde7f38e1a0c842655d240c4 303 SMART SM00387 180 298 1.9E-22 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS04025 6de24a25cde7f38e1a0c842655d240c4 303 PRINTS PR00344 Bacterial sensor protein C-terminal signature 225 239 2.0E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RMA_RS04025 6de24a25cde7f38e1a0c842655d240c4 303 PRINTS PR00344 Bacterial sensor protein C-terminal signature 258 276 2.0E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RMA_RS04025 6de24a25cde7f38e1a0c842655d240c4 303 PRINTS PR00344 Bacterial sensor protein C-terminal signature 282 295 2.0E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RMA_RS04025 6de24a25cde7f38e1a0c842655d240c4 303 PANTHER PTHR24423 48 299 3.2E-32 T 22-04-2016 RMA_RS04025 6de24a25cde7f38e1a0c842655d240c4 303 SUPERFAMILY SSF55874 137 297 1.2E-30 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS04025 6de24a25cde7f38e1a0c842655d240c4 303 Gene3D G3DSA:3.30.565.10 137 298 3.2E-34 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS04025 6de24a25cde7f38e1a0c842655d240c4 303 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 181 297 4.7E-19 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS02545 0dd06a6ef0beac011df6b6f4458b6401 331 Pfam PF13533 Biotin-lipoyl like 64 95 6.1E-6 T 22-04-2016 RMA_RS02545 0dd06a6ef0beac011df6b6f4458b6401 331 SUPERFAMILY SSF111369 46 179 2.09E-17 T 22-04-2016 RMA_RS02545 0dd06a6ef0beac011df6b6f4458b6401 331 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 30 328 9.8E-40 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RMA_RS02545 0dd06a6ef0beac011df6b6f4458b6401 331 PANTHER PTHR30469 5 331 4.2E-35 T 22-04-2016 RMA_RS02545 0dd06a6ef0beac011df6b6f4458b6401 331 Gene3D G3DSA:2.40.50.100 51 86 4.2E-10 T 22-04-2016 RMA_RS02545 0dd06a6ef0beac011df6b6f4458b6401 331 Gene3D G3DSA:2.40.50.100 142 180 4.2E-10 T 22-04-2016 RMA_RS06420 0b4f9ad1bae6242c4c1eed58a3882ef8 593 Gene3D G3DSA:1.20.920.10 547 587 9.0E-4 T 22-04-2016 IPR001487 Bromodomain GO:0005515 RMA_RS06420 0b4f9ad1bae6242c4c1eed58a3882ef8 593 SMART SM00382 29 195 2.4E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS06420 0b4f9ad1bae6242c4c1eed58a3882ef8 593 SMART SM00382 312 484 5.2E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain RMA_RS06420 0b4f9ad1bae6242c4c1eed58a3882ef8 593 SUPERFAMILY SSF52540 4 210 1.08E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06420 0b4f9ad1bae6242c4c1eed58a3882ef8 593 Gene3D G3DSA:3.40.50.300 286 497 5.2E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06420 0b4f9ad1bae6242c4c1eed58a3882ef8 593 Gene3D G3DSA:3.40.50.300 7 206 6.6E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06420 0b4f9ad1bae6242c4c1eed58a3882ef8 593 PANTHER PTHR19211 11 536 1.7E-144 T 22-04-2016 RMA_RS06420 0b4f9ad1bae6242c4c1eed58a3882ef8 593 ProSitePatterns PS00211 ABC transporters family signature. 121 135 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS06420 0b4f9ad1bae6242c4c1eed58a3882ef8 593 ProSitePatterns PS00211 ABC transporters family signature. 411 425 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RMA_RS06420 0b4f9ad1bae6242c4c1eed58a3882ef8 593 Pfam PF00005 ABC transporter 304 439 2.4E-23 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS06420 0b4f9ad1bae6242c4c1eed58a3882ef8 593 Pfam PF00005 ABC transporter 20 149 9.4E-23 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RMA_RS06420 0b4f9ad1bae6242c4c1eed58a3882ef8 593 Pfam PF16326 ABC transporter C-terminal domain 524 592 1.6E-13 T 22-04-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 RMA_RS06420 0b4f9ad1bae6242c4c1eed58a3882ef8 593 SUPERFAMILY SSF52540 280 497 9.41E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS04175 6a496d2f6c66f749b8ca23d4b703a6ea 280 Gene3D G3DSA:1.10.530.10 86 207 1.4E-12 T 22-04-2016 RMA_RS04175 6a496d2f6c66f749b8ca23d4b703a6ea 280 Pfam PF01464 Transglycosylase SLT domain 86 218 7.5E-11 T 22-04-2016 IPR008258 Transglycosylase SLT domain 1 RMA_RS04175 6a496d2f6c66f749b8ca23d4b703a6ea 280 SUPERFAMILY SSF53955 52 122 7.88E-17 T 22-04-2016 IPR023346 Lysozyme-like domain RMA_RS04175 6a496d2f6c66f749b8ca23d4b703a6ea 280 SUPERFAMILY SSF53955 152 207 7.88E-17 T 22-04-2016 IPR023346 Lysozyme-like domain RMA_RS02015 64fe6e556c052c00cf7282592b612d9f 160 Pfam PF03797 Autotransporter beta-domain 5 152 3.8E-23 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS02015 64fe6e556c052c00cf7282592b612d9f 160 Gene3D G3DSA:2.40.128.130 5 159 2.2E-19 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS02015 64fe6e556c052c00cf7282592b612d9f 160 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 9 157 3.3E-21 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RMA_RS02015 64fe6e556c052c00cf7282592b612d9f 160 SUPERFAMILY SSF103515 4 158 2.48E-24 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS06450 3e47d3f1d212c1c720140f10e57804e9 279 PANTHER PTHR34138 15 278 2.4E-47 T 22-04-2016 RMA_RS06450 3e47d3f1d212c1c720140f10e57804e9 279 PIRSF PIRSF038471 18 278 1.6E-48 T 22-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 RMA_RS06450 3e47d3f1d212c1c720140f10e57804e9 279 PANTHER PTHR34138:SF1 15 278 2.4E-47 T 22-04-2016 RMA_RS06450 3e47d3f1d212c1c720140f10e57804e9 279 Pfam PF04085 rod shape-determining protein MreC 140 275 2.6E-33 T 22-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 RMA_RS06450 3e47d3f1d212c1c720140f10e57804e9 279 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 48 258 4.2E-32 T 22-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 RMA_RS03605 3b724b7d24342b141006f8ba9edf9d21 240 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 18 240 1.8E-70 T 22-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RMA_RS03605 3b724b7d24342b141006f8ba9edf9d21 240 SUPERFAMILY SSF64438 7 239 3.66E-58 T 22-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic RMA_RS03605 3b724b7d24342b141006f8ba9edf9d21 240 PANTHER PTHR30616 51 221 3.4E-43 T 22-04-2016 RMA_RS03605 3b724b7d24342b141006f8ba9edf9d21 240 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 33 222 7.5E-45 T 22-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RMA_RS03605 3b724b7d24342b141006f8ba9edf9d21 240 Gene3D G3DSA:3.60.140.10 33 239 3.1E-59 T 22-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RMA_RS00420 897ad43e8ed35afa8eac39faffdf8128 259 PANTHER PTHR30589 1 253 9.0E-92 T 22-04-2016 RMA_RS00420 897ad43e8ed35afa8eac39faffdf8128 259 PANTHER PTHR30589:SF0 1 253 9.0E-92 T 22-04-2016 RMA_RS00420 897ad43e8ed35afa8eac39faffdf8128 259 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 5 259 18.691 T 22-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RMA_RS00420 897ad43e8ed35afa8eac39faffdf8128 259 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 2 253 8.0E-75 T 22-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RMA_RS00420 897ad43e8ed35afa8eac39faffdf8128 259 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 137 149 - T 22-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RMA_RS00420 897ad43e8ed35afa8eac39faffdf8128 259 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 8 253 3.9E-77 T 22-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RMA_RS06970 3666744e58ae43141beb2ed8ffd6e90a 159 Pfam PF05433 Glycine zipper 2TM domain 31 72 7.5E-9 T 22-04-2016 IPR008816 Glycine zipper 2TM domain GO:0019867 RMA_RS06970 3666744e58ae43141beb2ed8ffd6e90a 159 Pfam PF16998 17 kDa outer membrane surface antigen 79 158 6.6E-11 T 22-04-2016 IPR032635 Surface antigen domain RMA_RS06970 3666744e58ae43141beb2ed8ffd6e90a 159 PIRSF PIRSF002721 4 159 3.3E-58 T 22-04-2016 IPR016364 Surface antigen, Rickettsia type RMA_RS06615 54ba98f81840fe2d3ad94b303262a089 493 PANTHER PTHR22773:SF40 1 490 5.5E-197 T 22-04-2016 RMA_RS06615 54ba98f81840fe2d3ad94b303262a089 493 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 8 491 4.4E-188 T 22-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 RMA_RS06615 54ba98f81840fe2d3ad94b303262a089 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 331 350 9.2E-47 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RMA_RS06615 54ba98f81840fe2d3ad94b303262a089 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 142 161 9.2E-47 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RMA_RS06615 54ba98f81840fe2d3ad94b303262a089 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 383 409 9.2E-47 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RMA_RS06615 54ba98f81840fe2d3ad94b303262a089 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 172 196 9.2E-47 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RMA_RS06615 54ba98f81840fe2d3ad94b303262a089 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 243 267 9.2E-47 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RMA_RS06615 54ba98f81840fe2d3ad94b303262a089 493 PANTHER PTHR22773 1 490 5.5E-197 T 22-04-2016 RMA_RS06615 54ba98f81840fe2d3ad94b303262a089 493 Pfam PF00361 Proton-conducting membrane transporter 136 423 1.1E-83 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RMA_RS00790 4d19d1b2b04349bb759ad4b0c9be48b1 212 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 27 208 26.4 T 22-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 RMA_RS00790 4d19d1b2b04349bb759ad4b0c9be48b1 212 Pfam PF01926 50S ribosome-binding GTPase 41 159 1.1E-22 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 RMA_RS00790 4d19d1b2b04349bb759ad4b0c9be48b1 212 Gene3D G3DSA:3.40.50.300 26 209 6.4E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00790 4d19d1b2b04349bb759ad4b0c9be48b1 212 SUPERFAMILY SSF52540 34 209 1.19E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS00790 4d19d1b2b04349bb759ad4b0c9be48b1 212 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 22 204 1.5E-63 T 22-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 RMA_RS00790 4d19d1b2b04349bb759ad4b0c9be48b1 212 PANTHER PTHR11649 19 210 6.4E-45 T 22-04-2016 RMA_RS04830 9702b7fd26c6ee6c88a2521082df554b 149 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 149 33.728 T 22-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RMA_RS04830 9702b7fd26c6ee6c88a2521082df554b 149 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 3 133 2.0E-13 T 22-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RMA_RS04830 9702b7fd26c6ee6c88a2521082df554b 149 PANTHER PTHR34701 4 136 4.5E-25 T 22-04-2016 RMA_RS04830 9702b7fd26c6ee6c88a2521082df554b 149 Pfam PF02381 MraZ protein, putative antitoxin-like 79 146 2.7E-17 T 22-04-2016 IPR020603 MraZ domain RMA_RS04830 9702b7fd26c6ee6c88a2521082df554b 149 SUPERFAMILY SSF89447 1 139 1.99E-36 T 22-04-2016 RMA_RS05025 7abf1fb2bcb2a585f0795ee838625620 205 Pfam PF02630 SCO1/SenC 14 192 1.4E-70 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC RMA_RS05025 7abf1fb2bcb2a585f0795ee838625620 205 Gene3D G3DSA:3.40.30.10 10 203 2.1E-59 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS05025 7abf1fb2bcb2a585f0795ee838625620 205 SUPERFAMILY SSF52833 49 203 2.53E-51 T 22-04-2016 IPR012336 Thioredoxin-like fold RMA_RS05025 7abf1fb2bcb2a585f0795ee838625620 205 PANTHER PTHR12151 10 205 2.3E-63 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC RMA_RS07250 3ca8c5e1d8abc7307fb4fc51c15bb9c5 360 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 357 1.7E-50 T 22-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 RMA_RS07250 3ca8c5e1d8abc7307fb4fc51c15bb9c5 360 PANTHER PTHR33529 1 359 1.3E-30 T 22-04-2016 RMA_RS07250 3ca8c5e1d8abc7307fb4fc51c15bb9c5 360 PANTHER PTHR33529:SF2 1 359 1.3E-30 T 22-04-2016 RMA_RS07130 525b58b9b558fd697e6642f4a07524be 288 SUPERFAMILY SSF55681 5 286 2.24E-125 T 22-04-2016 RMA_RS07130 525b58b9b558fd697e6642f4a07524be 288 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 5 285 4.7E-132 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS07130 525b58b9b558fd697e6642f4a07524be 288 Gene3D G3DSA:1.20.58.180 213 287 3.1E-30 T 22-04-2016 RMA_RS07130 525b58b9b558fd697e6642f4a07524be 288 PANTHER PTHR30075 4 279 5.8E-181 T 22-04-2016 RMA_RS07130 525b58b9b558fd697e6642f4a07524be 288 Gene3D G3DSA:3.30.930.10 2 210 1.8E-94 T 22-04-2016 RMA_RS07130 525b58b9b558fd697e6642f4a07524be 288 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 79 99 2.1E-60 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS07130 525b58b9b558fd697e6642f4a07524be 288 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 159 174 2.1E-60 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS07130 525b58b9b558fd697e6642f4a07524be 288 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 58 73 2.1E-60 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS07130 525b58b9b558fd697e6642f4a07524be 288 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 110 134 2.1E-60 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS07130 525b58b9b558fd697e6642f4a07524be 288 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 136 156 2.1E-60 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS07130 525b58b9b558fd697e6642f4a07524be 288 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 249 265 2.1E-60 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS07130 525b58b9b558fd697e6642f4a07524be 288 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 4 288 56.41 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS07130 525b58b9b558fd697e6642f4a07524be 288 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 6 286 2.6E-137 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RMA_RS01800 a6a614d00e40766599ac5c435057abd6 163 Pfam PF12784 PD-(D/E)XK nuclease family transposase 1 139 5.9E-23 T 22-04-2016 RMA_RS06445 b91f8ceb8ac23c890e9f93eb924abd2f 78 Gene3D G3DSA:1.10.260.40 5 73 2.6E-12 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RMA_RS06445 b91f8ceb8ac23c890e9f93eb924abd2f 78 Pfam PF01381 Helix-turn-helix 11 69 5.7E-16 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RMA_RS06445 b91f8ceb8ac23c890e9f93eb924abd2f 78 SMART SM00530 10 69 1.9E-8 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RMA_RS06445 b91f8ceb8ac23c890e9f93eb924abd2f 78 SUPERFAMILY SSF47413 5 71 1.01E-9 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RMA_RS05940 db49a6f65acf16dfd44a924b414a3bac 111 SUPERFAMILY SSF143100 9 70 1.44E-9 T 22-04-2016 RMA_RS05940 db49a6f65acf16dfd44a924b414a3bac 111 SUPERFAMILY SSF47598 69 110 4.08E-5 T 22-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RMA_RS05940 db49a6f65acf16dfd44a924b414a3bac 111 Pfam PF05534 HicB family 66 105 7.5E-13 T 22-04-2016 IPR008651 Uncharacterised protein family HicB RMA_RS00090 881e716bd4fe5c2a16bf943fa7eae029 318 Gene3D G3DSA:3.40.50.1980 54 197 1.2E-26 T 22-04-2016 RMA_RS00090 881e716bd4fe5c2a16bf943fa7eae029 318 PANTHER PTHR30477:SF1 30 290 1.3E-23 T 22-04-2016 RMA_RS00090 881e716bd4fe5c2a16bf943fa7eae029 318 PANTHER PTHR30477 30 290 1.3E-23 T 22-04-2016 RMA_RS00090 881e716bd4fe5c2a16bf943fa7eae029 318 SUPERFAMILY SSF53807 62 317 1.52E-47 T 22-04-2016 RMA_RS00090 881e716bd4fe5c2a16bf943fa7eae029 318 Pfam PF01297 Zinc-uptake complex component A periplasmic 72 311 2.8E-31 T 22-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 RMA_RS02455 83008eccdc15ca5e7621a7339424a502 65 SUPERFAMILY SSF50156 4 48 2.16E-6 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS02455 83008eccdc15ca5e7621a7339424a502 65 Gene3D G3DSA:2.30.42.10 5 44 5.2E-5 T 22-04-2016 IPR001478 PDZ domain GO:0005515 RMA_RS00685 66bf39f2622c306165afe078d33f6afa 463 PANTHER PTHR23417 176 186 6.3E-60 T 22-04-2016 RMA_RS00685 66bf39f2622c306165afe078d33f6afa 463 PANTHER PTHR23417 235 463 6.3E-60 T 22-04-2016 RMA_RS00685 66bf39f2622c306165afe078d33f6afa 463 PANTHER PTHR23417 94 157 6.3E-60 T 22-04-2016 RMA_RS00685 66bf39f2622c306165afe078d33f6afa 463 PANTHER PTHR23417:SF2 176 186 6.3E-60 T 22-04-2016 RMA_RS00685 66bf39f2622c306165afe078d33f6afa 463 PANTHER PTHR23417:SF2 235 463 6.3E-60 T 22-04-2016 RMA_RS00685 66bf39f2622c306165afe078d33f6afa 463 PANTHER PTHR23417:SF2 94 157 6.3E-60 T 22-04-2016 RMA_RS00685 66bf39f2622c306165afe078d33f6afa 463 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 93 253 4.4E-49 T 22-04-2016 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675|UniPathway: UPA00958 RMA_RS00685 66bf39f2622c306165afe078d33f6afa 463 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 55 94 9.8E-16 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS04630 028c55fcb5f21cfae8b2005e1ac81525 83 Pfam PF12441 CopG antitoxin of type II toxin-antitoxin system 23 77 1.5E-7 T 22-04-2016 IPR022148 CopG antitoxin RMA_RS00705 1ecfa51a701f18f4c8e23f80c87111e9 83 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 74 9.4E-20 T 22-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RMA_RS00705 1ecfa51a701f18f4c8e23f80c87111e9 83 SUPERFAMILY SSF143120 1 78 1.05E-20 T 22-04-2016 RMA_RS00705 1ecfa51a701f18f4c8e23f80c87111e9 83 PANTHER PTHR33713 1 76 2.0E-16 T 22-04-2016 RMA_RS00705 1ecfa51a701f18f4c8e23f80c87111e9 83 PANTHER PTHR33713:SF6 1 76 2.0E-16 T 22-04-2016 RMA_RS02525 6b5a0138854fe2e03e61de4b110dec91 377 PANTHER PTHR18964:SF70 1 376 2.6E-155 T 22-04-2016 RMA_RS02525 6b5a0138854fe2e03e61de4b110dec91 377 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 2 364 9.1E-78 T 22-04-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 RMA_RS02525 6b5a0138854fe2e03e61de4b110dec91 377 Gene3D G3DSA:3.40.50.2000 197 365 4.3E-61 T 22-04-2016 RMA_RS02525 6b5a0138854fe2e03e61de4b110dec91 377 SUPERFAMILY SSF53756 1 375 2.83E-109 T 22-04-2016 RMA_RS02525 6b5a0138854fe2e03e61de4b110dec91 377 Gene3D G3DSA:3.40.50.2000 1 196 3.6E-64 T 22-04-2016 RMA_RS02525 6b5a0138854fe2e03e61de4b110dec91 377 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 28 361 7.6E-89 T 22-04-2016 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain RMA_RS02525 6b5a0138854fe2e03e61de4b110dec91 377 PANTHER PTHR18964 1 376 2.6E-155 T 22-04-2016 RMA_RS01805 90b3fae5e5b31d87a2fd658457fccdbb 67 ProDom PD195659 RP244 1 55 8.0E-25 T 22-04-2016 RMA_RS05115 f75c3cccae4b51a13f29d8f719977895 123 Pfam PF00581 Rhodanese-like domain 11 107 4.1E-6 T 22-04-2016 IPR001763 Rhodanese-like domain RMA_RS05115 f75c3cccae4b51a13f29d8f719977895 123 SUPERFAMILY SSF52821 5 121 1.14E-17 T 22-04-2016 IPR001763 Rhodanese-like domain RMA_RS05115 f75c3cccae4b51a13f29d8f719977895 123 SMART SM00450 7 114 4.1E-12 T 22-04-2016 IPR001763 Rhodanese-like domain RMA_RS05115 f75c3cccae4b51a13f29d8f719977895 123 Gene3D G3DSA:3.40.250.10 3 122 5.7E-39 T 22-04-2016 IPR001763 Rhodanese-like domain RMA_RS03825 bf90df5eac37ad744ffaa5fb4309c0a9 86 PANTHER PTHR38039 1 86 1.8E-23 T 22-04-2016 RMA_RS03825 bf90df5eac37ad744ffaa5fb4309c0a9 86 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 5 86 6.6E-29 T 22-04-2016 IPR009614 Toxin YoeB GO:0004519|GO:0006401 RMA_RS03825 bf90df5eac37ad744ffaa5fb4309c0a9 86 SUPERFAMILY SSF143011 2 82 1.7E-23 T 22-04-2016 RMA_RS03825 bf90df5eac37ad744ffaa5fb4309c0a9 86 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 5 86 1.7E-30 T 22-04-2016 IPR009614 Toxin YoeB GO:0004519|GO:0006401 RMA_RS03825 bf90df5eac37ad744ffaa5fb4309c0a9 86 PANTHER PTHR38039:SF1 1 86 1.8E-23 T 22-04-2016 RMA_RS02800 b064e0f77c0e22e9f1575359c5125d1f 128 Pfam PF01850 PIN domain 4 117 1.9E-8 T 22-04-2016 IPR002716 PIN domain RMA_RS02800 b064e0f77c0e22e9f1575359c5125d1f 128 Gene3D G3DSA:3.40.50.1010 1 117 4.9E-4 T 22-04-2016 IPR029060 PIN domain-like RMA_RS02800 b064e0f77c0e22e9f1575359c5125d1f 128 SUPERFAMILY SSF88723 1 122 4.49E-14 T 22-04-2016 IPR029060 PIN domain-like RMA_RS00165 dd3e413ac1adfce45fd02aec933b6dfe 168 Hamap MF_01398 ATP synthase subunit b [atpF]. 4 150 8.575 T 22-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RMA_RS00165 dd3e413ac1adfce45fd02aec933b6dfe 168 Pfam PF00430 ATP synthase B/B' CF(0) 8 129 4.6E-10 T 22-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RMA_RS03000 f2052436e33d92bf65874e0433a2502e 208 Gene3D G3DSA:2.60.130.10 44 203 2.0E-23 T 22-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RMA_RS03000 f2052436e33d92bf65874e0433a2502e 208 SUPERFAMILY SSF49482 15 202 6.02E-26 T 22-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RMA_RS03000 f2052436e33d92bf65874e0433a2502e 208 Pfam PF00775 Dioxygenase 54 139 1.1E-8 T 22-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RMA_RS05845 5971c7ec852e5b56cbf3f9ca84f3489a 282 PANTHER PTHR11048 11 279 3.0E-71 T 22-04-2016 RMA_RS05845 5971c7ec852e5b56cbf3f9ca84f3489a 282 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 65 87 - T 22-04-2016 IPR030470 UbiA prenyltransferase conserved site RMA_RS05845 5971c7ec852e5b56cbf3f9ca84f3489a 282 PANTHER PTHR11048:SF28 11 279 3.0E-71 T 22-04-2016 RMA_RS05845 5971c7ec852e5b56cbf3f9ca84f3489a 282 Pfam PF01040 UbiA prenyltransferase family 26 267 2.2E-50 T 22-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RMA_RS05845 5971c7ec852e5b56cbf3f9ca84f3489a 282 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 10 279 8.0E-100 T 22-04-2016 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 UniPathway: UPA00232 RMA_RS00910 cea7b03736985fe63f2c07e160b3b580 348 Pfam PF06258 Mitochondrial fission ELM1 12 343 2.0E-88 T 22-04-2016 IPR009367 Mitochondrial fission protein ELM1-like RMA_RS00910 cea7b03736985fe63f2c07e160b3b580 348 SUPERFAMILY SSF53756 1 346 2.32E-36 T 22-04-2016 RMA_RS00910 cea7b03736985fe63f2c07e160b3b580 348 PANTHER PTHR33986:SF2 63 345 2.7E-25 T 22-04-2016 RMA_RS00910 cea7b03736985fe63f2c07e160b3b580 348 PANTHER PTHR33986 63 345 2.7E-25 T 22-04-2016 RMA_RS04820 ae397e2ca982e3b7eb4273cd31599e36 132 ProDom PD201674 DIVISION CELL RP568 MEMBRANE TRANSMEMBRANE FTSL 4 129 6.0E-58 T 22-04-2016 RMA_RS04010 9ae5a9fb0c3653bbe0df708fa45e1aea 2794 PANTHER PTHR32294 525 877 6.3E-20 T 22-04-2016 RMA_RS04010 9ae5a9fb0c3653bbe0df708fa45e1aea 2794 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 659 829 1.8E-17 T 22-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS04010 9ae5a9fb0c3653bbe0df708fa45e1aea 2794 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 509 622 9.2E-22 T 22-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RMA_RS04010 9ae5a9fb0c3653bbe0df708fa45e1aea 2794 SUPERFAMILY SSF54001 163 355 4.61E-11 T 22-04-2016 RMA_RS02765 ac4bbe82cdfab4c695cd42e56239ad00 66 Gene3D G3DSA:1.25.40.20 2 54 1.3E-9 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain RMA_RS02765 ac4bbe82cdfab4c695cd42e56239ad00 66 SUPERFAMILY SSF48403 2 62 4.24E-11 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain RMA_RS05175 097a2c4e1ad35edaaa1ada069c1dba84 185 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 108 118 - T 22-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RMA_RS05175 097a2c4e1ad35edaaa1ada069c1dba84 185 PANTHER PTHR17224:SF1 1 166 1.2E-65 T 22-04-2016 RMA_RS05175 097a2c4e1ad35edaaa1ada069c1dba84 185 SUPERFAMILY SSF53178 1 184 1.44E-65 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RMA_RS05175 097a2c4e1ad35edaaa1ada069c1dba84 185 Pfam PF01195 Peptidyl-tRNA hydrolase 3 183 7.6E-54 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RMA_RS05175 097a2c4e1ad35edaaa1ada069c1dba84 185 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 2 180 2.7E-60 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RMA_RS05175 097a2c4e1ad35edaaa1ada069c1dba84 185 PANTHER PTHR17224 1 166 1.2E-65 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RMA_RS05175 097a2c4e1ad35edaaa1ada069c1dba84 185 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 178 35.849 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RMA_RS05175 097a2c4e1ad35edaaa1ada069c1dba84 185 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 22-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RMA_RS05175 097a2c4e1ad35edaaa1ada069c1dba84 185 Gene3D G3DSA:3.40.50.1470 1 184 1.2E-67 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RMA_RS01770 a07ef14d1d18cb8f1606965f925a0663 248 SUPERFAMILY SSF56655 1 244 1.02E-30 T 22-04-2016 RMA_RS01770 a07ef14d1d18cb8f1606965f925a0663 248 Gene3D G3DSA:3.40.190.80 160 234 5.9E-7 T 22-04-2016 RMA_RS01770 a07ef14d1d18cb8f1606965f925a0663 248 Pfam PF00459 Inositol monophosphatase family 1 242 2.7E-12 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RMA_RS01770 a07ef14d1d18cb8f1606965f925a0663 248 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 5.29E-7 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RMA_RS01770 a07ef14d1d18cb8f1606965f925a0663 248 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 5.29E-7 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RMA_RS01770 a07ef14d1d18cb8f1606965f925a0663 248 PRINTS PR00377 Inositol monophosphatase superfamily signature 79 95 5.29E-7 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RMA_RS01770 a07ef14d1d18cb8f1606965f925a0663 248 PRINTS PR00377 Inositol monophosphatase superfamily signature 141 164 5.29E-7 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RMA_RS01770 a07ef14d1d18cb8f1606965f925a0663 248 Gene3D G3DSA:3.30.540.10 2 159 1.2E-18 T 22-04-2016 RMA_RS03750 908fdf33e91378bd0fdee618222e8932 587 Pfam PF01368 DHH family 86 220 2.3E-11 T 22-04-2016 IPR001667 DDH domain RMA_RS03750 908fdf33e91378bd0fdee618222e8932 587 Pfam PF02272 DHHA1 domain 386 451 6.1E-13 T 22-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 RMA_RS03750 908fdf33e91378bd0fdee618222e8932 587 PANTHER PTHR30255:SF2 6 583 2.0E-206 T 22-04-2016 RMA_RS03750 908fdf33e91378bd0fdee618222e8932 587 PANTHER PTHR30255 6 583 2.0E-206 T 22-04-2016 RMA_RS03750 908fdf33e91378bd0fdee618222e8932 587 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 32 583 8.4E-182 T 22-04-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 RMA_RS03750 908fdf33e91378bd0fdee618222e8932 587 SUPERFAMILY SSF64182 61 455 3.79E-111 T 22-04-2016 RMA_RS00955 bdc2172c0fc411dc1df2ee80f0890054 218 SUPERFAMILY SSF161098 15 201 1.44E-39 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RMA_RS00955 bdc2172c0fc411dc1df2ee80f0890054 218 Gene3D G3DSA:1.10.3720.10 15 215 2.6E-43 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RMA_RS00955 bdc2172c0fc411dc1df2ee80f0890054 218 PANTHER PTHR30614:SF15 14 218 2.5E-79 T 22-04-2016 RMA_RS00955 bdc2172c0fc411dc1df2ee80f0890054 218 PANTHER PTHR30614 14 218 2.5E-79 T 22-04-2016 RMA_RS00955 bdc2172c0fc411dc1df2ee80f0890054 218 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 110 4.2E-27 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RMA_RS00955 bdc2172c0fc411dc1df2ee80f0890054 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 215 6.8E-25 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RMA_RS04535 0de9531a63237d4f2451b0a3bd668799 67 Pfam PF03222 Tryptophan/tyrosine permease family 12 63 7.9E-7 T 22-04-2016 IPR018227 Tryptophan/tyrosine permease GO:0003333 RMA_RS03985 db790d395d4afdd27206ffa5c046ec03 324 Gene3D G3DSA:3.30.420.10 183 321 7.3E-14 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS03985 db790d395d4afdd27206ffa5c046ec03 324 Pfam PF13936 Helix-turn-helix domain 5 48 8.5E-15 T 22-04-2016 IPR025246 Transposase IS30-like HTH domain RMA_RS03985 db790d395d4afdd27206ffa5c046ec03 324 Gene3D G3DSA:1.10.10.60 8 42 1.3E-5 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 RMA_RS03985 db790d395d4afdd27206ffa5c046ec03 324 Pfam PF00665 Integrase core domain 179 278 9.5E-9 T 22-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RMA_RS03985 db790d395d4afdd27206ffa5c046ec03 324 PANTHER PTHR10948 1 320 7.8E-66 T 22-04-2016 RMA_RS03985 db790d395d4afdd27206ffa5c046ec03 324 SUPERFAMILY SSF109709 11 100 5.75E-5 T 22-04-2016 RMA_RS03985 db790d395d4afdd27206ffa5c046ec03 324 SUPERFAMILY SSF53098 176 320 7.84E-21 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS01090 3af6f1a5355a5af10f4d36779abdecf2 242 PIRSF PIRSF005650 5 242 1.3E-95 T 22-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RMA_RS01090 3af6f1a5355a5af10f4d36779abdecf2 242 Hamap MF_01220_B Uridylate kinase [pyrH]. 8 241 42.53 T 22-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RMA_RS01090 3af6f1a5355a5af10f4d36779abdecf2 242 PANTHER PTHR21499 6 242 2.2E-104 T 22-04-2016 RMA_RS01090 3af6f1a5355a5af10f4d36779abdecf2 242 Gene3D G3DSA:3.40.1160.10 6 241 3.7E-80 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RMA_RS01090 3af6f1a5355a5af10f4d36779abdecf2 242 PANTHER PTHR21499:SF23 6 242 2.2E-104 T 22-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RMA_RS01090 3af6f1a5355a5af10f4d36779abdecf2 242 Pfam PF00696 Amino acid kinase family 11 220 2.3E-28 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RMA_RS01090 3af6f1a5355a5af10f4d36779abdecf2 242 SUPERFAMILY SSF53633 8 240 6.81E-68 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RMA_RS01090 3af6f1a5355a5af10f4d36779abdecf2 242 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 10 240 1.3E-99 T 22-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RMA_RS05865 fa4db2caf8f4bc8e63d00341b5cc0719 266 PANTHER PTHR13627 53 199 2.1E-22 T 22-04-2016 RMA_RS05865 fa4db2caf8f4bc8e63d00341b5cc0719 266 Pfam PF04991 LicD family 71 121 1.1E-17 T 22-04-2016 IPR007074 LicD family RMA_RS04315 af9d4851a162aff830027a92f8bcf0ee 239 SUPERFAMILY SSF53474 4 211 4.15E-47 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS04315 af9d4851a162aff830027a92f8bcf0ee 239 PANTHER PTHR12277:SF79 27 211 2.7E-52 T 22-04-2016 RMA_RS04315 af9d4851a162aff830027a92f8bcf0ee 239 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 26 139 1.2E-10 T 22-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RMA_RS04315 af9d4851a162aff830027a92f8bcf0ee 239 Gene3D G3DSA:3.40.50.1820 4 211 6.8E-54 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS04315 af9d4851a162aff830027a92f8bcf0ee 239 PANTHER PTHR12277 27 211 2.7E-52 T 22-04-2016 RMA_RS00515 41c69d46ac87988864f1d782ba9978f4 105 Pfam PF10878 Protein of unknown function (DUF2672) 24 92 3.4E-42 T 22-04-2016 IPR022718 Protein of unknown function DUF2672 RMA_RS00515 41c69d46ac87988864f1d782ba9978f4 105 ProDom PD197221 RP061 TRANSMEMBRANE MEMBRANE RC0089 34 105 5.0E-34 T 22-04-2016 IPR022718 Protein of unknown function DUF2672 RMA_RS02880 9c0069e0d86bef9969e81dbfdcfeee5b 246 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 7 232 7.0E-54 T 22-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RMA_RS02880 9c0069e0d86bef9969e81dbfdcfeee5b 246 Gene3D G3DSA:3.90.550.10 6 240 2.8E-58 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RMA_RS02880 9c0069e0d86bef9969e81dbfdcfeee5b 246 Pfam PF02348 Cytidylyltransferase 7 213 1.5E-56 T 22-04-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RMA_RS02880 9c0069e0d86bef9969e81dbfdcfeee5b 246 SUPERFAMILY SSF53448 6 239 2.6E-45 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RMA_RS02880 9c0069e0d86bef9969e81dbfdcfeee5b 246 PANTHER PTHR21485:SF4 6 234 1.2E-72 T 22-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RMA_RS02880 9c0069e0d86bef9969e81dbfdcfeee5b 246 PANTHER PTHR21485 6 234 1.2E-72 T 22-04-2016 RMA_RS02880 9c0069e0d86bef9969e81dbfdcfeee5b 246 Hamap MF_00057 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. 4 239 33.881 T 22-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RMA_RS01930 e4cd9b5eb9d3de0026856efacb8d715a 106 Pfam PF03334 Na+/H+ antiporter subunit 10 88 3.1E-23 T 22-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 RMA_RS01930 e4cd9b5eb9d3de0026856efacb8d715a 106 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 10 99 2.3E-29 T 22-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 RMA_RS01930 e4cd9b5eb9d3de0026856efacb8d715a 106 PANTHER PTHR34703 1 94 6.3E-16 T 22-04-2016 RMA_RS01930 e4cd9b5eb9d3de0026856efacb8d715a 106 PANTHER PTHR34703:SF1 1 94 6.3E-16 T 22-04-2016 RMA_RS00440 c4ff9bb196fa44ebafc68e679a928ca5 186 Gene3D G3DSA:3.40.1050.10 34 156 2.1E-6 T 22-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RMA_RS00440 c4ff9bb196fa44ebafc68e679a928ca5 186 SUPERFAMILY SSF53056 40 182 4.71E-10 T 22-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RMA_RS03970 a56868706e5804081eee22d39dc5745d 270 SUPERFAMILY SSF52540 145 268 4.83E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS07195 afc03e0ef98d7a3ba320077e350a9cfc 171 ProDom PD207074 TRANSMEMBRANE MEMBRANE UNCHARACTERIZED RC1356 RP875 1 171 3.0E-88 T 22-04-2016 RMA_RS02325 5fd2c7625db5ebd107779559c4cfc207 235 PANTHER PTHR21262:SF0 16 181 4.6E-32 T 22-04-2016 RMA_RS02325 5fd2c7625db5ebd107779559c4cfc207 235 SUPERFAMILY SSF109604 20 206 2.2E-47 T 22-04-2016 RMA_RS02325 5fd2c7625db5ebd107779559c4cfc207 235 PANTHER PTHR21262 16 181 4.6E-32 T 22-04-2016 RMA_RS02325 5fd2c7625db5ebd107779559c4cfc207 235 Pfam PF13328 HD domain 45 184 6.3E-18 T 22-04-2016 IPR003607 HD/PDEase domain RMA_RS02505 e6701e9f06b1f2012f38e944ebd0faa1 154 SMART SM00732 17 117 1.8E-26 T 22-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RMA_RS02505 e6701e9f06b1f2012f38e944ebd0faa1 154 Gene3D G3DSA:3.30.420.140 19 152 1.9E-41 T 22-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RMA_RS02505 e6701e9f06b1f2012f38e944ebd0faa1 154 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 17 152 22.829 T 22-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RMA_RS02505 e6701e9f06b1f2012f38e944ebd0faa1 154 Pfam PF03652 Holliday junction resolvase 19 150 1.1E-38 T 22-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RMA_RS02505 e6701e9f06b1f2012f38e944ebd0faa1 154 SUPERFAMILY SSF53098 19 152 5.92E-36 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RMA_RS02505 e6701e9f06b1f2012f38e944ebd0faa1 154 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 21 149 2.6E-27 T 22-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RMA_RS02505 e6701e9f06b1f2012f38e944ebd0faa1 154 PANTHER PTHR33317 19 154 1.7E-34 T 22-04-2016 RMA_RS02505 e6701e9f06b1f2012f38e944ebd0faa1 154 PANTHER PTHR33317:SF1 19 154 1.7E-34 T 22-04-2016 RMA_RS03695 5b4985ae694b3e87c6024b27a3567a5b 88 ProDom PD210802 RP277 PLASMID 10 76 0.003 T 22-04-2016 IPR020174 Uncharacterised protein family RP277 RMA_RS03755 6f63db3276cddca3c1ced232c4479bde 440 Gene3D G3DSA:3.40.50.150 62 188 3.5E-27 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS03755 6f63db3276cddca3c1ced232c4479bde 440 Gene3D G3DSA:3.40.50.150 237 276 3.5E-27 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS03755 6f63db3276cddca3c1ced232c4479bde 440 PANTHER PTHR10108:SF705 223 319 1.7E-15 T 22-04-2016 RMA_RS03755 6f63db3276cddca3c1ced232c4479bde 440 PANTHER PTHR10108:SF705 1 179 1.7E-15 T 22-04-2016 RMA_RS03755 6f63db3276cddca3c1ced232c4479bde 440 PANTHER PTHR10108 223 319 1.7E-15 T 22-04-2016 RMA_RS03755 6f63db3276cddca3c1ced232c4479bde 440 PANTHER PTHR10108 1 179 1.7E-15 T 22-04-2016 RMA_RS03755 6f63db3276cddca3c1ced232c4479bde 440 SUPERFAMILY SSF53335 20 274 7.89E-28 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RMA_RS03755 6f63db3276cddca3c1ced232c4479bde 440 Pfam PF13847 Methyltransferase domain 71 189 4.9E-17 T 22-04-2016 IPR025714 Methyltransferase domain RMA_RS06935 8b479ff49537aa7ef0e1b637f6e8a9e2 107 Pfam PF05258 Protein of unknown function (DUF721) 10 97 1.8E-10 T 22-04-2016 IPR007922 Protein of unknown function DUF721/UPF0232 RMA_RS06935 8b479ff49537aa7ef0e1b637f6e8a9e2 107 PIRSF PIRSF007061 1 107 1.5E-68 T 22-04-2016 IPR016507 Uncharacterised conserved protein UCP007061 RMA_RS05585 40d3aefc39f46c417290e9dae46c7ab7 119 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 11 113 7.2E-31 T 22-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RMA_RS05585 40d3aefc39f46c417290e9dae46c7ab7 119 ProSitePatterns PS00464 Ribosomal protein L22 signature. 89 113 - T 22-04-2016 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RMA_RS05585 40d3aefc39f46c417290e9dae46c7ab7 119 Gene3D G3DSA:3.90.470.10 9 117 6.3E-38 T 22-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RMA_RS05585 40d3aefc39f46c417290e9dae46c7ab7 119 PANTHER PTHR13501 11 115 1.7E-41 T 22-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RMA_RS05585 40d3aefc39f46c417290e9dae46c7ab7 119 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 7 116 23.669 T 22-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RMA_RS05585 40d3aefc39f46c417290e9dae46c7ab7 119 SUPERFAMILY SSF54843 5 118 2.35E-40 T 22-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RMA_RS05585 40d3aefc39f46c417290e9dae46c7ab7 119 Pfam PF00237 Ribosomal protein L22p/L17e 14 113 2.9E-29 T 22-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RMA_RS05075 c0be9e03421a6a1bd5fcea17e1f87969 55 SUPERFAMILY SSF52218 1 33 7.54E-5 T 22-04-2016 IPR029039 Flavoprotein-like domain RMA_RS05075 c0be9e03421a6a1bd5fcea17e1f87969 55 Gene3D G3DSA:3.40.50.360 1 32 6.6E-8 T 22-04-2016 IPR029039 Flavoprotein-like domain RMA_RS02805 23d0a35b3f701321bb3b3fa2de571942 82 SUPERFAMILY SSF89447 3 44 2.22E-9 T 22-04-2016 RMA_RS02805 23d0a35b3f701321bb3b3fa2de571942 82 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 49 4.1E-6 T 22-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RMA_RS02805 23d0a35b3f701321bb3b3fa2de571942 82 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 6 46 1.1E-15 T 22-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RMA_RS02805 23d0a35b3f701321bb3b3fa2de571942 82 SMART SM00966 7 51 6.4E-7 T 22-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RMA_RS02805 23d0a35b3f701321bb3b3fa2de571942 82 Gene3D G3DSA:2.10.260.10 5 40 3.7E-8 T 22-04-2016 RMA_RS04565 bad53965c3ddc45257b5a3cdbf18f2b1 104 ProDom PD199129 RP547 1 104 4.0E-54 T 22-04-2016 RMA_RS04340 bc940b1a001b37b641ced66aa9c61b23 418 Pfam PF07690 Major Facilitator Superfamily 10 337 1.7E-15 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RMA_RS04340 bc940b1a001b37b641ced66aa9c61b23 418 Gene3D G3DSA:1.20.1250.20 6 189 4.7E-7 T 22-04-2016 RMA_RS04340 bc940b1a001b37b641ced66aa9c61b23 418 Gene3D G3DSA:1.20.1250.20 236 414 1.5E-11 T 22-04-2016 RMA_RS04340 bc940b1a001b37b641ced66aa9c61b23 418 PANTHER PTHR12778 5 414 1.7E-53 T 22-04-2016 RMA_RS04340 bc940b1a001b37b641ced66aa9c61b23 418 SUPERFAMILY SSF103473 7 415 3.4E-32 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS02980 0aefe1ec8ab1d531d73ec12da32d1063 180 Pfam PF04279 Intracellular septation protein A 2 173 2.5E-46 T 22-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RMA_RS02980 0aefe1ec8ab1d531d73ec12da32d1063 180 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 2 178 3.7E-64 T 22-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RMA_RS02980 0aefe1ec8ab1d531d73ec12da32d1063 180 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 2 177 15.776 T 22-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RMA_RS02980 0aefe1ec8ab1d531d73ec12da32d1063 180 PANTHER PTHR36917 1 170 1.0E-33 T 22-04-2016 RMA_RS02980 0aefe1ec8ab1d531d73ec12da32d1063 180 PANTHER PTHR36917:SF1 1 170 1.0E-33 T 22-04-2016 RMA_RS04745 d2827d08941504062ea0f92016dfba99 99 SUPERFAMILY SSF53271 4 97 1.35E-16 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like RMA_RS04745 d2827d08941504062ea0f92016dfba99 99 Gene3D G3DSA:3.40.50.2020 7 97 2.8E-14 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like RMA_RS04500 12efde324b1fc8294d0f47d17faa2e1f 458 PANTHER PTHR22773 4 458 7.8E-97 T 22-04-2016 RMA_RS04500 12efde324b1fc8294d0f47d17faa2e1f 458 Pfam PF00361 Proton-conducting membrane transporter 115 407 1.5E-60 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RMA_RS04500 12efde324b1fc8294d0f47d17faa2e1f 458 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 2 456 6.2E-135 T 22-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RMA_RS04500 12efde324b1fc8294d0f47d17faa2e1f 458 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 18 456 14.614 T 22-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RMA_RS04500 12efde324b1fc8294d0f47d17faa2e1f 458 PANTHER PTHR22773:SF41 4 458 7.8E-97 T 22-04-2016 RMA_RS04790 f5d94cd63191eae8e77ff99bb032e0d1 581 SUPERFAMILY SSF141571 473 576 5.36E-22 T 22-04-2016 RMA_RS04790 f5d94cd63191eae8e77ff99bb032e0d1 581 SUPERFAMILY SSF141571 328 430 9.81E-11 T 22-04-2016 RMA_RS04790 f5d94cd63191eae8e77ff99bb032e0d1 581 PANTHER PTHR14136 59 284 1.2E-23 T 22-04-2016 RMA_RS04790 f5d94cd63191eae8e77ff99bb032e0d1 581 Pfam PF13599 Pentapeptide repeats (9 copies) 121 190 1.2E-9 T 22-04-2016 IPR001646 Pentapeptide repeat RMA_RS04790 f5d94cd63191eae8e77ff99bb032e0d1 581 Pfam PF13599 Pentapeptide repeats (9 copies) 345 415 6.8E-7 T 22-04-2016 IPR001646 Pentapeptide repeat RMA_RS04790 f5d94cd63191eae8e77ff99bb032e0d1 581 Pfam PF13599 Pentapeptide repeats (9 copies) 476 549 1.1E-9 T 22-04-2016 IPR001646 Pentapeptide repeat RMA_RS04790 f5d94cd63191eae8e77ff99bb032e0d1 581 Pfam PF00805 Pentapeptide repeats (8 copies) 198 235 2.2E-4 T 22-04-2016 IPR001646 Pentapeptide repeat RMA_RS04790 f5d94cd63191eae8e77ff99bb032e0d1 581 Pfam PF00805 Pentapeptide repeats (8 copies) 58 96 4.9E-6 T 22-04-2016 IPR001646 Pentapeptide repeat RMA_RS04790 f5d94cd63191eae8e77ff99bb032e0d1 581 SUPERFAMILY SSF141571 64 234 2.9E-31 T 22-04-2016 RMA_RS04790 f5d94cd63191eae8e77ff99bb032e0d1 581 SUPERFAMILY SSF141571 209 351 7.32E-16 T 22-04-2016 RMA_RS04575 f56c064e2163897e9995ac380ac6046a 78 SUPERFAMILY SSF47598 1 40 5.84E-5 T 22-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RMA_RS04575 f56c064e2163897e9995ac380ac6046a 78 Gene3D G3DSA:1.10.1220.10 1 41 8.7E-7 T 22-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RMA_RS06545 f70057919a459136600ee1a4db599dd3 836 Pfam PF13116 Protein of unknown function 231 487 5.9E-10 T 22-04-2016 IPR025263 Domain of unknown function DUF3971 RMA_RS06545 f70057919a459136600ee1a4db599dd3 836 Pfam PF13502 AsmA-like C-terminal region 667 807 6.8E-8 T 22-04-2016 IPR032712 AsmA-like, C-terminal RMA_RS05860 85a14c41cf34cfc6dd6275776d2ace9d 250 PANTHER PTHR13627 51 233 1.7E-24 T 22-04-2016 RMA_RS05860 85a14c41cf34cfc6dd6275776d2ace9d 250 Pfam PF04991 LicD family 71 123 1.4E-17 T 22-04-2016 IPR007074 LicD family RMA_RS02620 8453ac5120453d0fb13e5297dd27ff58 876 Pfam PF13502 AsmA-like C-terminal region 625 850 2.1E-19 T 22-04-2016 IPR032712 AsmA-like, C-terminal RMA_RS00475 55660901baadfaa630d5b99a776db2dd 500 Pfam PF03219 TLC ATP/ADP transporter 4 489 3.4E-206 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RMA_RS00475 55660901baadfaa630d5b99a776db2dd 500 SUPERFAMILY SSF103473 143 486 1.27E-6 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS00475 55660901baadfaa630d5b99a776db2dd 500 SUPERFAMILY SSF103473 25 112 1.27E-6 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS00475 55660901baadfaa630d5b99a776db2dd 500 PANTHER PTHR31187:SF1 1 497 5.8E-137 T 22-04-2016 RMA_RS00475 55660901baadfaa630d5b99a776db2dd 500 PANTHER PTHR31187 1 497 5.8E-137 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RMA_RS00475 55660901baadfaa630d5b99a776db2dd 500 TIGRFAM TIGR00769 AAA: ADP/ATP carrier protein family 20 489 3.3E-210 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RMA_RS06200 0d3fddffe4acabcfc7c39543fce8f7e0 123 Pfam PF00293 NUDIX domain 6 101 5.5E-8 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RMA_RS06200 0d3fddffe4acabcfc7c39543fce8f7e0 123 SUPERFAMILY SSF55811 7 114 3.25E-12 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RMA_RS06200 0d3fddffe4acabcfc7c39543fce8f7e0 123 Gene3D G3DSA:3.90.79.10 2 116 3.4E-12 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RMA_RS00715 3cc33c7d19813eb6a861bec67b5471db 251 PANTHER PTHR30035 40 238 7.3E-40 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RMA_RS00715 3cc33c7d19813eb6a861bec67b5471db 251 Pfam PF04333 MlaA lipoprotein 43 236 5.4E-61 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RMA_RS00715 3cc33c7d19813eb6a861bec67b5471db 251 PRINTS PR01805 VacJ lipoprotein signature 61 77 1.3E-27 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RMA_RS00715 3cc33c7d19813eb6a861bec67b5471db 251 PRINTS PR01805 VacJ lipoprotein signature 44 57 1.3E-27 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RMA_RS00715 3cc33c7d19813eb6a861bec67b5471db 251 PRINTS PR01805 VacJ lipoprotein signature 112 129 1.3E-27 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RMA_RS00715 3cc33c7d19813eb6a861bec67b5471db 251 PRINTS PR01805 VacJ lipoprotein signature 148 165 1.3E-27 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RMA_RS00020 dd725875cf28daa49a7313d1256b7674 258 PANTHER PTHR30413 9 258 2.4E-15 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RMA_RS00020 dd725875cf28daa49a7313d1256b7674 258 Pfam PF01061 ABC-2 type transporter 13 216 7.0E-10 T 22-04-2016 IPR013525 ABC-2 type transporter GO:0016020 RMA_RS02140 fc6d5da20ac87e59f5450cc972ab3278 243 Pfam PF04335 VirB8 protein 37 241 5.5E-46 T 22-04-2016 IPR007430 Bacterial virulence protein VirB8 GO:0016020 RMA_RS02140 fc6d5da20ac87e59f5450cc972ab3278 243 PIRSF PIRSF003299 21 242 1.5E-39 T 22-04-2016 IPR026264 Type IV secretion system protein VirB8/PtlE GO:0030255 RMA_RS02140 fc6d5da20ac87e59f5450cc972ab3278 243 SUPERFAMILY SSF54427 107 241 1.66E-23 T 22-04-2016 IPR032710 NTF2-like domain RMA_RS06940 2ab3236bc709f5ff3b6b851d55c4c055 242 SUPERFAMILY SSF56925 44 240 3.92E-19 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RMA_RS06940 2ab3236bc709f5ff3b6b851d55c4c055 242 Pfam PF13505 Outer membrane protein beta-barrel domain 40 240 3.1E-10 T 22-04-2016 IPR027385 Outer membrane protein beta-barrel RMA_RS06940 2ab3236bc709f5ff3b6b851d55c4c055 242 Gene3D G3DSA:2.40.160.20 43 241 4.2E-23 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RMA_RS04180 61b42df3057fea55f57e87163863e0bb 161 ProDom PD206029 RP458 4 161 8.0E-83 T 22-04-2016 IPR024386 Protein of unknown function DUF2532 RMA_RS04180 61b42df3057fea55f57e87163863e0bb 161 Pfam PF10811 Protein of unknown function (DUF2532) 4 160 1.0E-80 T 22-04-2016 IPR024386 Protein of unknown function DUF2532 RMA_RS06330 90237d613bf9333a980fca7d2002d71a 116 PANTHER PTHR15032 6 115 4.2E-31 T 22-04-2016 RMA_RS06330 90237d613bf9333a980fca7d2002d71a 116 Gene3D G3DSA:3.60.15.10 4 112 3.8E-20 T 22-04-2016 IPR001279 Metallo-beta-lactamase RMA_RS06330 90237d613bf9333a980fca7d2002d71a 116 Pfam PF12706 Beta-lactamase superfamily domain 3 69 2.0E-8 T 22-04-2016 IPR001279 Metallo-beta-lactamase RMA_RS06330 90237d613bf9333a980fca7d2002d71a 116 SUPERFAMILY SSF56281 3 73 1.01E-7 T 22-04-2016 IPR001279 Metallo-beta-lactamase RMA_RS06330 90237d613bf9333a980fca7d2002d71a 116 PANTHER PTHR15032:SF4 6 115 4.2E-31 T 22-04-2016 RMA_RS01845 938d3e6f78c356e82af50f46acbe6af5 158 Pfam PF01957 NfeD-like C-terminal, partner-binding 11 151 6.6E-11 T 22-04-2016 IPR002810 NfeD-like, C-terminal domain RMA_RS01845 938d3e6f78c356e82af50f46acbe6af5 158 Gene3D G3DSA:2.40.50.140 89 151 8.6E-6 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold RMA_RS02905 0f4d4c32f5d243679f9d7c761efa82f7 528 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 19 501 4.3E-10 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS02905 0f4d4c32f5d243679f9d7c761efa82f7 528 SUPERFAMILY SSF81442 10 524 6.15E-38 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RMA_RS00580 2421edb7ba12289d9adfaefede0c447a 438 Gene3D G3DSA:2.40.160.10 36 219 1.1E-14 T 22-04-2016 IPR023614 Porin domain RMA_RS00580 2421edb7ba12289d9adfaefede0c447a 438 Gene3D G3DSA:2.40.160.10 258 438 1.1E-14 T 22-04-2016 IPR023614 Porin domain RMA_RS00580 2421edb7ba12289d9adfaefede0c447a 438 SUPERFAMILY SSF56935 89 210 1.07E-19 T 22-04-2016 RMA_RS00580 2421edb7ba12289d9adfaefede0c447a 438 SUPERFAMILY SSF56935 249 438 1.07E-19 T 22-04-2016 RMA_RS00580 2421edb7ba12289d9adfaefede0c447a 438 Pfam PF13609 Gram-negative porin 10 412 1.1E-24 T 22-04-2016 RMA_RS06020 3269a56b2e9312710886f91f8082350f 98 Gene3D G3DSA:1.10.1660.10 8 58 6.3E-4 T 22-04-2016 RMA_RS04455 e44d0399089e809e3a99035906eb4c35 55 Pfam PF04754 Putative transposase, YhgA-like 1 52 1.5E-9 T 22-04-2016 IPR006842 Transposase (putative), YhgA-like RMA_RS07245 fe5ae387f9254d1574968b7443211b2a 154 SUPERFAMILY SSF102400 1 135 6.28E-25 T 22-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RMA_RS07245 fe5ae387f9254d1574968b7443211b2a 154 Gene3D G3DSA:3.40.50.10110 14 124 2.1E-18 T 22-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RMA_RS07245 fe5ae387f9254d1574968b7443211b2a 154 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 121 3.5E-17 T 22-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RMA_RS01335 c9c6959a3106a87a4b2627dbb1a4c4c3 210 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 1 37 3.3E-19 T 22-04-2016 IPR011723 Zinc finger/thioredoxin putative RMA_RS01335 c9c6959a3106a87a4b2627dbb1a4c4c3 210 Pfam PF13717 zinc-ribbon domain 1 35 1.0E-13 T 22-04-2016 RMA_RS07355 5597dc4649aebc0a9519fae73f836692 211 ProDom PD209763 TRANSMEMBRANE RP854 MEMBRANE 1 211 3.0E-106 T 22-04-2016 IPR020135 Uncharacterised protein family RP854 RMA_RS03895 4609d4f309143620fc4df7299e4e1f0f 599 Pfam PF06986 Type-1V conjugative transfer system mating pair stabilisation 298 539 3.0E-69 T 22-04-2016 IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN RMA_RS02870 90108def4d580a0ab8b1c30b72021d35 508 TIGRFAM TIGR00769 AAA: ADP/ATP carrier protein family 26 502 2.1E-124 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RMA_RS02870 90108def4d580a0ab8b1c30b72021d35 508 Pfam PF03219 TLC ATP/ADP transporter 13 502 2.5E-187 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RMA_RS02870 90108def4d580a0ab8b1c30b72021d35 508 PANTHER PTHR31187 11 508 3.1E-99 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RMA_RS02095 c679107244d4d5ff2d1197235765b89a 512 Pfam PF00361 Proton-conducting membrane transporter 68 341 2.2E-14 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RMA_RS04780 fb4a9c1be580ff2195bee2f14144213b 88 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 33 78 1.3E-9 T 22-04-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 RMA_RS06360 b507adab60e5ea949a83cbee68448f07 112 Pfam PF13413 Helix-turn-helix domain 4 62 1.8E-19 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RMA_RS06360 b507adab60e5ea949a83cbee68448f07 112 PANTHER PTHR34475:SF1 3 60 2.9E-14 T 22-04-2016 RMA_RS06360 b507adab60e5ea949a83cbee68448f07 112 PANTHER PTHR34475 3 60 2.9E-14 T 22-04-2016 RMA_RS04105 ffa2a8d489668791d342138cc31fc0ec 71 Gene3D G3DSA:3.40.630.30 7 69 6.5E-4 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase RMA_RS06435 15aa015fabea253d592b378316574c64 384 SUPERFAMILY SSF52540 4 177 1.78E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06435 15aa015fabea253d592b378316574c64 384 PANTHER PTHR33295:SF4 1 380 4.5E-89 T 22-04-2016 RMA_RS06435 15aa015fabea253d592b378316574c64 384 Pfam PF13635 Domain of unknown function (DUF4143) 172 328 2.6E-25 T 22-04-2016 IPR025420 Domain of unknown function DUF4143 RMA_RS06435 15aa015fabea253d592b378316574c64 384 Gene3D G3DSA:3.40.50.300 3 126 4.9E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS06435 15aa015fabea253d592b378316574c64 384 Pfam PF13173 AAA domain 17 135 1.1E-23 T 22-04-2016 RMA_RS06435 15aa015fabea253d592b378316574c64 384 PANTHER PTHR33295 1 380 4.5E-89 T 22-04-2016 RMA_RS00900 ad2a9f7364caa146391c72853d390661 128 SUPERFAMILY SSF81593 2 122 6.28E-37 T 22-04-2016 RMA_RS00900 ad2a9f7364caa146391c72853d390661 128 Pfam PF08780 Nucleotidyltransferase substrate binding protein like 7 122 2.7E-33 T 22-04-2016 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 RMA_RS00900 ad2a9f7364caa146391c72853d390661 128 TIGRFAM TIGR01987 HI0074: nucleotidyltransferase substrate binding protein, HI0074 family 7 125 7.4E-53 T 22-04-2016 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 RMA_RS00900 ad2a9f7364caa146391c72853d390661 128 Gene3D G3DSA:1.20.120.330 3 124 1.2E-44 T 22-04-2016 RMA_RS03310 f7e3c5ace5c65ec4b5fb9c225cc03c59 173 PANTHER PTHR36115 85 172 3.3E-12 T 22-04-2016 RMA_RS03310 f7e3c5ace5c65ec4b5fb9c225cc03c59 173 PANTHER PTHR36115:SF3 85 172 3.3E-12 T 22-04-2016 RMA_RS03310 f7e3c5ace5c65ec4b5fb9c225cc03c59 173 Pfam PF06271 RDD family 7 167 8.2E-35 T 22-04-2016 IPR010432 RDD RMA_RS03550 a297887d8218efe8d37c7fad69c3c7a3 198 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 77 194 1.9E-8 T 22-04-2016 IPR010664 Lipopolysaccharide assembly, LptC-related RMA_RS01985 5f776ce12e4b198807b2f2404ec5cf5d 116 Pfam PF06250 Protein of unknown function (DUF1016) 15 102 9.8E-33 T 22-04-2016 IPR009362 Protein of unknown function DUF1016 RMA_RS01985 5f776ce12e4b198807b2f2404ec5cf5d 116 PANTHER PTHR30547 15 112 4.5E-42 T 22-04-2016 RMA_RS01985 5f776ce12e4b198807b2f2404ec5cf5d 116 PANTHER PTHR30547:SF0 15 112 4.5E-42 T 22-04-2016 RMA_RS01490 a06b85fb1d24422e530ea149e84d612c 61 Pfam PF04588 Hypoxia induced protein conserved region 4 52 8.2E-9 T 22-04-2016 IPR007667 Hypoxia induced protein, domain RMA_RS06375 3f57a0c0137d60a7f7543bb7ea1c8032 432 ProDom PD215945 TRANSMEMBRANE MEMBRANE RP760 60 419 0.0 T 22-04-2016 IPR020182 Uncharacterised protein family RP760 RMA_RS02205 c2c61d4f6c8ab906e0ab587cf355ee69 281 Pfam PF11019 Protein of unknown function (DUF2608) 39 275 6.4E-61 T 22-04-2016 IPR022565 Protein of unknown function DUF2608 RMA_RS02205 c2c61d4f6c8ab906e0ab587cf355ee69 281 ProDom PD317075 PRECURSOR RP296 SIGNAL 8 281 2.0E-156 T 22-04-2016 IPR020531 Uncharacterised protein family, RP296 RMA_RS00400 55d5a557c66704e9aba55284cf60ce9b 117 Gene3D G3DSA:3.90.120.10 87 100 9.4E-5 T 22-04-2016 RMA_RS00400 55d5a557c66704e9aba55284cf60ce9b 117 Gene3D G3DSA:3.90.120.10 8 25 9.4E-5 T 22-04-2016 RMA_RS04700 bae83c614bafd14c9975b9dd77077019 103 Pfam PF13516 Leucine Rich repeat 38 57 0.0012 T 22-04-2016 IPR001611 Leucine-rich repeat GO:0005515 RMA_RS04700 bae83c614bafd14c9975b9dd77077019 103 Gene3D G3DSA:3.80.10.10 7 101 1.4E-13 T 22-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like RMA_RS04700 bae83c614bafd14c9975b9dd77077019 103 SUPERFAMILY SSF52047 10 91 2.09E-13 T 22-04-2016 RMA_RS06485 9f9228ee8c9b3f56cc22a22aa36ff629 157 Pfam PF04355 SmpA / OmlA family 29 99 6.3E-10 T 22-04-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 RMA_RS05150 f6352259388e31924fae23482f0a8276 489 Pfam PF01734 Patatin-like phospholipase 14 209 3.3E-16 T 22-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 RMA_RS05150 f6352259388e31924fae23482f0a8276 489 PANTHER PTHR32241:SF3 14 208 3.7E-25 T 22-04-2016 RMA_RS05150 f6352259388e31924fae23482f0a8276 489 SUPERFAMILY SSF52151 6 317 2.88E-37 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RMA_RS05150 f6352259388e31924fae23482f0a8276 489 Gene3D G3DSA:3.40.1090.10 15 335 3.3E-58 T 22-04-2016 RMA_RS05150 f6352259388e31924fae23482f0a8276 489 PANTHER PTHR32241 14 208 3.7E-25 T 22-04-2016 RMA_RS00255 f5e54ac5f16ffdc5e5f00c5bb76a723b 85 ProDom PD511875 RC0041 7 45 1.0E-14 T 22-04-2016 RMA_RS03885 790bde74b10045a1313251efb1fe04e1 322 Pfam PF06834 TraU protein 24 321 5.3E-110 T 22-04-2016 IPR009649 TraU RMA_RS03910 3db122538e1e13d542d805b3ac211969 909 Pfam PF07916 TraG-like protein, N-terminal region 6 462 9.0E-66 T 22-04-2016 IPR012931 TraG-like, N-terminal RMA_RS06930 d378d1d25d97b431afb737dfd70071e0 327 Pfam PF00953 Glycosyl transferase family 4 82 226 6.6E-25 T 22-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RMA_RS06930 d378d1d25d97b431afb737dfd70071e0 327 PANTHER PTHR22926 10 320 2.5E-49 T 22-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RMA_RS06930 d378d1d25d97b431afb737dfd70071e0 327 PANTHER PTHR22926:SF3 10 320 2.5E-49 T 22-04-2016 RMA_RS04450 87ef847bf7b664525a60948408c56eb5 290 SUPERFAMILY SSF103473 182 279 5.49E-5 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS04450 87ef847bf7b664525a60948408c56eb5 290 SUPERFAMILY SSF103473 36 76 5.49E-5 T 22-04-2016 IPR020846 Major facilitator superfamily domain RMA_RS04450 87ef847bf7b664525a60948408c56eb5 290 Pfam PF06691 Protein of unknown function (DUF1189) 17 277 2.1E-13 T 22-04-2016 IPR009574 Protein of unknown function DUF1189 RMA_RS04450 87ef847bf7b664525a60948408c56eb5 290 ProDom PD205440 TRANSMEMBRANE MEMBRANE RP489 1 288 6.0E-129 T 22-04-2016 RMA_RS00690 d2ba1d2c3c9a895a3bb00d145ebced79 225 ProDom PD032436 LIPOPROTEIN UNCHARACTERIZED PROBABLE CJ0457C SIMILAR TRANSFERASE BACTERIA PRECURSOR SIGNAL CC0304 9 138 2.0E-71 T 22-04-2016 IPR007172 Domain of unknown function DUF374 RMA_RS00690 d2ba1d2c3c9a895a3bb00d145ebced79 225 Pfam PF04028 Domain of unknown function (DUF374) 74 137 4.3E-21 T 22-04-2016 IPR007172 Domain of unknown function DUF374 RMA_RS01630 79067c21f788ec2308f5aa5d804fd326 161 SUPERFAMILY SSF90123 3 158 2.09E-8 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RMA_RS02430 f49acb248cbafa580b79deb4d745bb42 223 ProDom PD317075 PRECURSOR RP296 SIGNAL 27 223 1.0E-16 T 22-04-2016 IPR020531 Uncharacterised protein family, RP296 RMA_RS02430 f49acb248cbafa580b79deb4d745bb42 223 Pfam PF11019 Protein of unknown function (DUF2608) 11 222 2.4E-26 T 22-04-2016 IPR022565 Protein of unknown function DUF2608 RMA_RS03725 d03f3bd08f06c0bfcf54e7f10bac2ad6 105 Gene3D G3DSA:1.20.120.330 4 104 1.0E-31 T 22-04-2016 RMA_RS03725 d03f3bd08f06c0bfcf54e7f10bac2ad6 105 TIGRFAM TIGR01987 HI0074: nucleotidyltransferase substrate binding protein, HI0074 family 11 103 8.8E-21 T 22-04-2016 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 RMA_RS03725 d03f3bd08f06c0bfcf54e7f10bac2ad6 105 SUPERFAMILY SSF81593 4 104 4.71E-31 T 22-04-2016 RMA_RS03725 d03f3bd08f06c0bfcf54e7f10bac2ad6 105 Pfam PF08780 Nucleotidyltransferase substrate binding protein like 6 103 8.1E-28 T 22-04-2016 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 RMA_RS01105 a1dd992be57ecda3abe1c14bf0b428e3 67 Pfam PF10879 Protein of unknown function (DUF2674) 1 67 4.0E-44 T 22-04-2016 IPR024246 Protein of unknown function DUF2674 RMA_RS01105 a1dd992be57ecda3abe1c14bf0b428e3 67 ProDom PD195599 RP158 1 67 1.0E-31 T 22-04-2016 IPR024246 Protein of unknown function DUF2674 RMA_RS02685 e8abed9d59880d7e7fa8f762b72fe9d0 412 Pfam PF04932 O-Antigen ligase 199 345 1.4E-17 T 22-04-2016 IPR007016 O-antigen ligase-related RMA_RS00295 c786134e0239243f16395727241cb26e 157 SUPERFAMILY SSF103515 4 102 2.48E-7 T 22-04-2016 IPR005546 Autotransporter beta-domain RMA_RS00295 c786134e0239243f16395727241cb26e 157 ProDom PD500946 RC0047 SURFACE SCA10 CELL ANTIGEN-LIKE 50 87 4.0E-15 T 22-04-2016 RMA_RS04265 5d24e0aaf6fb9157df9dda2f52d509a5 49 Gene3D G3DSA:3.30.565.10 2 48 1.0E-4 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS04265 5d24e0aaf6fb9157df9dda2f52d509a5 49 SUPERFAMILY SSF55874 3 49 5.27E-7 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RMA_RS01145 dc810006005e28227c98b3918b6d96a9 353 Gene3D G3DSA:3.40.50.1820 54 168 1.8E-10 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS01145 dc810006005e28227c98b3918b6d96a9 353 SUPERFAMILY SSF53474 8 168 2.31E-11 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS00565 b8d1743605f503d620ce1384cbde1a95 224 SUPERFAMILY SSF110997 143 220 6.41E-5 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 RMA_RS00565 b8d1743605f503d620ce1384cbde1a95 224 Pfam PF05036 Sporulation related domain 144 222 8.1E-12 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 RMA_RS00565 b8d1743605f503d620ce1384cbde1a95 224 Gene3D G3DSA:3.30.70.1070 142 223 5.7E-4 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 RMA_RS02530 ceff7cb5af577251d83a1981ddc5d37f 445 SUPERFAMILY SSF53756 70 409 3.87E-8 T 22-04-2016 RMA_RS00825 6ad925f455b411d23c39d093e7561901 891 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 521 710 8.6E-18 T 22-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 RMA_RS01170 60124b5f4ed372b2bed8f4acda14915e 78 Pfam PF04070 Domain of unknown function (DUF378) 14 65 4.3E-16 T 22-04-2016 IPR007211 Protein of unknown function DUF378 RMA_RS03505 fb8210956cf531fe9145d6dbd3758663 950 Pfam PF00805 Pentapeptide repeats (8 copies) 634 666 5.6E-4 T 22-04-2016 IPR001646 Pentapeptide repeat RMA_RS03505 fb8210956cf531fe9145d6dbd3758663 950 SUPERFAMILY SSF141571 634 671 3.53E-5 T 22-04-2016 RMA_RS00810 bab186551f81e0ede639310e32343bc9 1136 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 499 576 1.3E-11 T 22-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 RMA_RS02940 67c41efb81a8a9f7bb0963501a75f5e6 66 Pfam PF02637 GatB domain 9 58 7.7E-5 T 22-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 RMA_RS02125 4952dd41836d33ce94bbec82bbfb878f 250 TIGRFAM TIGR02781 VirB9: P-type conjugative transfer protein VirB9 4 247 2.6E-80 T 22-04-2016 IPR014148 P-type conjugative transfer protein VirB9 RMA_RS02125 4952dd41836d33ce94bbec82bbfb878f 250 Pfam PF03524 Conjugal transfer protein 31 245 3.1E-61 T 22-04-2016 IPR010258 Conjugal transfer, TrbG/VirB9/CagX RMA_RS06605 77ff899dcfffe5314657c3fedcfff672 104 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 10 99 1.2E-23 T 22-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RMA_RS06605 77ff899dcfffe5314657c3fedcfff672 104 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 5 104 19.385 T 22-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RMA_RS06605 77ff899dcfffe5314657c3fedcfff672 104 PANTHER PTHR11434 6 104 1.1E-39 T 22-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RMA_RS07675 53e6e9aec42bb5be84315a51781f28f5 116 Pfam PF12784 PD-(D/E)XK nuclease family transposase 1 114 9.5E-23 T 22-04-2016 RMA_RS03355 a3c8b9aad5e96b2484ef8c7e053a33bc 291 Pfam PF00561 alpha/beta hydrolase fold 37 137 1.8E-15 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RMA_RS03355 a3c8b9aad5e96b2484ef8c7e053a33bc 291 PANTHER PTHR10992 20 289 1.9E-33 T 22-04-2016 RMA_RS03355 a3c8b9aad5e96b2484ef8c7e053a33bc 291 Gene3D G3DSA:3.40.50.1820 21 289 8.5E-55 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS03355 a3c8b9aad5e96b2484ef8c7e053a33bc 291 SUPERFAMILY SSF53474 22 281 5.71E-41 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold RMA_RS00465 f65efbb6ad603ce40a24192666fb6b59 68 Pfam PF09992 Phosphodiester glycosidase 2 64 4.7E-14 T 22-04-2016 IPR018711 Phosphodiester glycosidase RMA_RS05215 b5e1e779cdfca568c1ed11df9473ff52 506 Gene3D G3DSA:1.25.40.20 281 451 1.9E-6 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain RMA_RS05215 b5e1e779cdfca568c1ed11df9473ff52 506 SUPERFAMILY SSF48403 283 443 2.57E-6 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain RMA_RS03485 5a05a1bffc8ae5d92c029f0e49cc7cef 67 Pfam PF13612 Transposase DDE domain 1 64 3.3E-21 T 22-04-2016 IPR025668 Transposase DDE domain RMA_RS01095 1dc8d2455920061657a5ec1749fb212e 107 PANTHER PTHR34584:SF2 8 83 8.0E-12 T 22-04-2016 RMA_RS01095 1dc8d2455920061657a5ec1749fb212e 107 PANTHER PTHR34584 8 83 8.0E-12 T 22-04-2016 RMA_RS01095 1dc8d2455920061657a5ec1749fb212e 107 Pfam PF01899 Na+/H+ ion antiporter subunit 8 93 1.5E-19 T 22-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 RMA_RS04715 3705a6b70739b7af345d22808b6877cf 87 Pfam PF01569 PAP2 superfamily 18 83 7.9E-10 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RMA_RS04715 3705a6b70739b7af345d22808b6877cf 87 Gene3D G3DSA:1.20.144.10 15 81 3.5E-11 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RMA_RS04715 3705a6b70739b7af345d22808b6877cf 87 SUPERFAMILY SSF48317 14 83 4.25E-11 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RMA_RS04475 5838e3aa68df072f0144409c83868648 77 SUPERFAMILY SSF48371 9 73 6.28E-8 T 22-04-2016 IPR016024 Armadillo-type fold GO:0005488 RMA_RS04475 5838e3aa68df072f0144409c83868648 77 Gene3D G3DSA:1.25.10.10 11 74 4.8E-6 T 22-04-2016 IPR011989 Armadillo-like helical RMA_RS05085 03ec7a93993dd1e7554942aab9aca404 529 SMART SM00246 414 431 3.0 T 22-04-2016 IPR003124 WH2 domain GO:0003779 RMA_RS05085 03ec7a93993dd1e7554942aab9aca404 529 SMART SM00246 387 404 26.0 T 22-04-2016 IPR003124 WH2 domain GO:0003779 RMA_RS03195 903fc8350cedf2f751b64e56e11d118e 167 Pfam PF12100 Domain of unknown function (DUF3576) 64 162 2.9E-36 T 22-04-2016 IPR021959 Protein of unknown function DUF3576 RMA_RS03210 68e3eb421b78f609de3249133bac16b7 101 Pfam PF04977 Septum formation initiator 21 99 1.2E-18 T 22-04-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 RMA_RS02690 6a18ce1d1307844f4e284a8cd58fc0ce 157 Pfam PF09923 Uncharacterized protein conserved in bacteria (DUF2155) 67 156 2.9E-17 T 22-04-2016 IPR019225 Protein of unknown function DUF2155 RMA_RS06565 1508d7c6bdcb9163b5ef3cae0aeab943 810 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 12 806 1.3E-226 T 22-04-2016 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 RMA_RS06565 1508d7c6bdcb9163b5ef3cae0aeab943 810 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 183 383 1.4E-51 T 22-04-2016 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 RMA_RS06565 1508d7c6bdcb9163b5ef3cae0aeab943 810 SUPERFAMILY SSF52540 405 737 2.28E-9 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RMA_RS02990 21e05ab7b1db4d8e3db22b49f1416bb5 126 SUPERFAMILY SSF49503 37 125 2.0E-14 T 22-04-2016 IPR008972 Cupredoxin RMA_RS02990 21e05ab7b1db4d8e3db22b49f1416bb5 126 Gene3D G3DSA:2.60.40.420 11 109 1.3E-8 T 22-04-2016 IPR008972 Cupredoxin RMA_RS02990 21e05ab7b1db4d8e3db22b49f1416bb5 126 Pfam PF13473 Cupredoxin-like domain 16 124 2.1E-29 T 22-04-2016 IPR028096 EfeO-type cupredoxin-like domain RMA_RS03855 2278fcf3810d2711b47136c7a2bdb163 470 Pfam PF03743 Bacterial conjugation TrbI-like protein 192 396 6.2E-27 T 22-04-2016 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI RMA_RS01035 19b5adfdd2d206253653b463c9f858af 144 ProDom PD203358 RP144 1 121 4.0E-62 T 22-04-2016 RMA_RS01035 19b5adfdd2d206253653b463c9f858af 144 Pfam PF11304 Protein of unknown function (DUF3106) 12 75 4.9E-5 T 22-04-2016 IPR021455 Protein of unknown function DUF3106 RMA_RS04035 d745b1e51494f02471f7cd21035331e4 573 Pfam PF11638 DnaA N-terminal domain 488 551 1.0E-8 T 22-04-2016 IPR024633 DnaA N-terminal domain RMA_RS06160 002b477b379636bf1968326be5e5efae 97 Gene3D G3DSA:1.10.287.950 19 76 1.5E-4 T 22-04-2016 RMA_RS01420 3a042776be65f4724de7863b2057f21e 351 ProDom PD208305 RP198 PRECURSOR SIGNAL 1 351 0.0 T 22-04-2016 RMA_RS03840 837b8abc3386d77415d4565008472a9e 184 Pfam PF05309 TraE protein 1 178 8.7E-22 T 22-04-2016 IPR007973 Pilus assembly TraE GO:0000746 RMA_RS03905 5189201b7952957ae9d334d1a26fa0d5 444 Pfam PF06122 Conjugative relaxosome accessory transposon protein 37 372 1.2E-71 T 22-04-2016 IPR010927 Type IV conjugative transfer system protein TraH RMA_RS01020 2ec2ab8ad84eda1094d65d76ace6474b 391 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 236 283 5.3E-29 T 22-04-2016 IPR005728 Rickettsial palindromic element RMA_RS05045 6760575fdaa121bb1d3af73a2447c606 250 Pfam PF05857 TraX protein 13 242 5.2E-50 T 22-04-2016 IPR008875 TraX RMA_RS02200 d4ffa7c34ba88d0ddd4c39971d377c3a 294 Pfam PF11019 Protein of unknown function (DUF2608) 23 285 5.3E-57 T 22-04-2016 IPR022565 Protein of unknown function DUF2608 RMA_RS02200 d4ffa7c34ba88d0ddd4c39971d377c3a 294 ProDom PD317075 PRECURSOR RP296 SIGNAL 106 243 6.0E-4 T 22-04-2016 IPR020531 Uncharacterised protein family, RP296 RMA_RS01675 a71edb52705066e9476d4c109e2ff3d0 128 Pfam PF10691 Protein of unknown function (DUF2497) 50 124 7.1E-22 T 22-04-2016 IPR019632 Protein of unknown function DUF2497 RMA_RS04305 31d59f415f05f9b7b6967866b674fc58 146 Pfam PF10116 Protein required for attachment to host cells 9 143 5.6E-26 T 22-04-2016 IPR019291 Host attachment protein RMA_RS05370 2f04b2cc716a5754aeee0c098f267cae 178 Pfam PF06776 Invasion associated locus B (IalB) protein 39 176 9.0E-15 T 22-04-2016 IPR010642 Invasion protein B RMA_RS04915 9691acd5b608394af4b963d65d569dfd 80 Gene3D G3DSA:1.25.40.20 3 44 0.001 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain RMA_RS04015 7e2af92507e9e1d1a05c18717b732d3d 90 Pfam PF06412 Conjugal transfer protein TraD 28 88 4.3E-22 T 22-04-2016 IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 RMA_RS03730 b3d61f5de8157adef3800592edbda3a0 109 Pfam PF10097 Predicted membrane protein (DUF2335) 41 89 3.9E-18 T 22-04-2016 IPR019284 Xylella phage Xfas53, Orf42 RMA_RS03820 2ea41254837a2dbbda9c8fd47acd14a9 207 Pfam PF13274 Protein of unknown function (DUF4065) 36 128 2.8E-15 T 22-04-2016 IPR025272 Domain of unknown function DUF4065 RMA_RS07325 fec08ed8b4413af363f654e7dc9a2d99 204 PANTHER PTHR13205 1 191 9.3E-16 T 22-04-2016 IPR032974 Polyprenol kinase family RMA_RS05920 354a20f2cc8cbf3eb0b61f3e28a7b197 112 Pfam PF10027 Predicted integral membrane protein (DUF2269) 5 111 5.6E-32 T 22-04-2016 IPR018729 Protein of unknown function DUF2269, transmembrane RMA_RS00815 fd4b8e08005132c3ebc10a0b2aae698d 661 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 406 495 3.9E-13 T 22-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 RMA_RS07145 42a347f6959c49908ba4692de74b5aff 209 PANTHER PTHR36701 1 209 1.6E-80 T 22-04-2016 RMA_RS07145 42a347f6959c49908ba4692de74b5aff 209 Pfam PF02677 Uncharacterized BCR, COG1636 14 188 1.7E-62 T 22-04-2016 IPR003828 Protein of unknown function DUF208