locus-tag class description ASQ44_RS00010 PF10672 S-adenosylmethionine-dependent methyltransferase ASQ44_RS00010 PF17785 PUA-like domain ASQ44_RS00015 PF07690 Major Facilitator Superfamily ASQ44_RS00015 PF00083 Sugar (and other) transporter ASQ44_RS00020 PF04607 Region found in RelA / SpoT proteins ASQ44_RS00020 PF02824 TGS domain ASQ44_RS00020 PF13291 ACT domain ASQ44_RS00025 PF13737 Transposase DDE domain ASQ44_RS00030 PF00665 Integrase core domain ASQ44_RS00030 PF02796 Helix-turn-helix domain of resolvase ASQ44_RS00060 PF17871 AAA lid domain ASQ44_RS00060 PF02861 Clp amino terminal domain, pathogenicity island component ASQ44_RS00060 PF10431 C-terminal, D2-small domain, of ClpB protein ASQ44_RS00060 PF00004 ATPase family associated with various cellular activities (AAA) ASQ44_RS00060 PF07724 AAA domain (Cdc48 subfamily) ASQ44_RS00080 PF10871 Protein of unknown function (DUF2748) ASQ44_RS00095 PF02272 DHHA1 domain ASQ44_RS00095 PF01411 tRNA synthetases class II (A) ASQ44_RS00095 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ASQ44_RS00105 PF17460 Uncharacterized protein RP854 ASQ44_RS00110 PF17542 Uncharacterized RP853 ASQ44_RS00120 PF08946 Osmosensory transporter coiled coil ASQ44_RS00120 PF00083 Sugar (and other) transporter ASQ44_RS00125 PF01218 Coproporphyrinogen III oxidase ASQ44_RS00140 PF03653 Uncharacterised protein family (UPF0093) ASQ44_RS00145 PF00762 Ferrochelatase ASQ44_RS00150 PF01208 Uroporphyrinogen decarboxylase (URO-D) ASQ44_RS00155 PF03618 Kinase/pyrophosphorylase ASQ44_RS00160 PF00085 Thioredoxin ASQ44_RS00165 PF14524 Wzt C-terminal domain ASQ44_RS00165 PF00005 ABC transporter ASQ44_RS00170 PF01061 ABC-2 type transporter ASQ44_RS00175 PF07992 Pyridine nucleotide-disulphide oxidoreductase ASQ44_RS00180 PF00132 Bacterial transferase hexapeptide (six repeats) ASQ44_RS00180 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ASQ44_RS00185 PF07977 FabA-like domain ASQ44_RS00190 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ASQ44_RS00190 PF00132 Bacterial transferase hexapeptide (six repeats) ASQ44_RS00215 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ASQ44_RS00220 PF01297 Zinc-uptake complex component A periplasmic ASQ44_RS00225 PF12627 Probable RNA and SrmB- binding site of polymerase A ASQ44_RS00225 PF12626 Polymerase A arginine-rich C-terminus ASQ44_RS00225 PF01743 Poly A polymerase head domain ASQ44_RS00240 PF03797 Autotransporter beta-domain ASQ44_RS00300 PF00430 ATP synthase B/B' CF(0) ASQ44_RS00305 PF00430 ATP synthase B/B' CF(0) ASQ44_RS00310 PF00137 ATP synthase subunit C ASQ44_RS00315 PF00119 ATP synthase A chain ASQ44_RS00320 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter ASQ44_RS00325 PF13462 Thioredoxin ASQ44_RS00335 PF13847 Methyltransferase domain ASQ44_RS00335 PF10119 Predicted methyltransferase regulatory domain ASQ44_RS00345 PF02463 RecF/RecN/SMC N terminal domain ASQ44_RS00360 PF17372 Family of unknown function (DUF5394) ASQ44_RS00390 PF02630 SCO1/SenC ASQ44_RS00395 PF02622 Uncharacterized ACR, COG1678 ASQ44_RS00415 PF01416 tRNA pseudouridine synthase ASQ44_RS00420 PF04542 Sigma-70 region 2 ASQ44_RS00420 PF04539 Sigma-70 region 3 ASQ44_RS00420 PF04545 Sigma-70, region 4 ASQ44_RS00420 PF03979 Sigma-70 factor, region 1.1 ASQ44_RS00420 PF04546 Sigma-70, non-essential region ASQ44_RS00420 PF00140 Sigma-70 factor, region 1.2 ASQ44_RS00425 PF13662 Toprim domain ASQ44_RS00425 PF08275 DNA primase catalytic core, N-terminal domain ASQ44_RS00425 PF01807 CHC2 zinc finger ASQ44_RS00435 PF03449 Transcription elongation factor, N-terminal ASQ44_RS00435 PF01272 Transcription elongation factor, GreA/GreB, C-term ASQ44_RS00440 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ASQ44_RS00445 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ASQ44_RS00445 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ASQ44_RS00450 PF03548 Outer membrane lipoprotein carrier protein LolA ASQ44_RS00460 PF02575 YbaB/EbfC DNA-binding family ASQ44_RS00485 PF00005 ABC transporter ASQ44_RS00500 PF04221 RelB antitoxin ASQ44_RS00505 PF03739 Lipopolysaccharide export system permease LptF/LptG ASQ44_RS00510 PF04364 DNA polymerase III chi subunit, HolC ASQ44_RS00520 PF07687 Peptidase dimerisation domain ASQ44_RS00520 PF01546 Peptidase family M20/M25/M40 ASQ44_RS00550 PF06965 Na+/H+ antiporter 1 ASQ44_RS00560 PF03099 Biotin/lipoate A/B protein ligase family ASQ44_RS00565 PF01510 N-acetylmuramoyl-L-alanine amidase ASQ44_RS00575 PF00886 Ribosomal protein S16 ASQ44_RS00580 PF00471 Ribosomal protein L33 ASQ44_RS00585 PF08676 MutL C terminal dimerisation domain ASQ44_RS00585 PF01119 DNA mismatch repair protein, C-terminal domain ASQ44_RS00610 PF02677 Epoxyqueuosine reductase QueH ASQ44_RS00625 PF02091 Glycyl-tRNA synthetase alpha subunit ASQ44_RS00630 PF05746 DALR anticodon binding domain ASQ44_RS00630 PF02092 Glycyl-tRNA synthetase beta subunit ASQ44_RS00635 PF03481 Putative GTP-binding controlling metal-binding ASQ44_RS00635 PF01300 Telomere recombination ASQ44_RS00640 PF02390 Putative methyltransferase ASQ44_RS00640 PF05175 Methyltransferase small domain ASQ44_RS00640 PF17827 PrmC N-terminal domain ASQ44_RS00665 PF01479 S4 domain ASQ44_RS00665 PF00849 RNA pseudouridylate synthase ASQ44_RS00670 PF03167 Uracil DNA glycosylase superfamily ASQ44_RS00680 PF00285 Citrate synthase, C-terminal domain ASQ44_RS00685 PF01018 GTP1/OBG ASQ44_RS00685 PF01926 50S ribosome-binding GTPase ASQ44_RS00690 PF05698 Bacterial trigger factor protein (TF) C-terminus ASQ44_RS00690 PF05697 Bacterial trigger factor protein (TF) ASQ44_RS00690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ASQ44_RS00705 PF00155 Aminotransferase class I and II ASQ44_RS00710 PF00183 Hsp90 protein ASQ44_RS00715 PF02594 Uncharacterised ACR, YggU family COG1872 ASQ44_RS00745 PF00436 Single-strand binding protein family ASQ44_RS00750 PF17755 UvrA DNA-binding domain ASQ44_RS00750 PF17760 UvrA interaction domain ASQ44_RS00785 PF00005 ABC transporter ASQ44_RS00795 PF16998 17 kDa outer membrane surface antigen ASQ44_RS00795 PF05433 Glycine zipper 2TM domain ASQ44_RS00800 PF16916 Dimerisation domain of Zinc Transporter ASQ44_RS00800 PF01545 Cation efflux family ASQ44_RS00805 PF14437 MafB19-like deaminase ASQ44_RS00810 PF01578 Cytochrome C assembly protein ASQ44_RS00815 PF12838 4Fe-4S dicluster domain ASQ44_RS00815 PF11953 Domain of unknown function (DUF3470) ASQ44_RS00820 PF13505 Outer membrane protein beta-barrel domain ASQ44_RS00825 PF13505 Outer membrane protein beta-barrel domain ASQ44_RS00830 PF05258 Dna[CI] antecedent, DciA ASQ44_RS00835 PF00953 Glycosyl transferase family 4 ASQ44_RS00840 PF04002 RadC-like JAB domain ASQ44_RS00845 PF04002 RadC-like JAB domain ASQ44_RS00850 PF00557 Metallopeptidase family M24 ASQ44_RS00860 PF09397 Ftsk gamma domain ASQ44_RS00860 PF17854 FtsK alpha domain ASQ44_RS00860 PF01580 FtsK/SpoIIIE family ASQ44_RS00860 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ASQ44_RS00865 PF03797 Autotransporter beta-domain ASQ44_RS00875 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ASQ44_RS00890 PF13091 PLD-like domain ASQ44_RS00900 PF00589 Phage integrase family ASQ44_RS00900 PF02899 Phage integrase, N-terminal SAM-like domain ASQ44_RS00905 PF01258 Prokaryotic dksA/traR C4-type zinc finger ASQ44_RS00910 PF02545 Maf-like protein ASQ44_RS00915 PF01176 Translation initiation factor 1A / IF-1 ASQ44_RS00990 PF01722 BolA-like protein ASQ44_RS01000 PF00999 Sodium/hydrogen exchanger family ASQ44_RS01000 PF02254 TrkA-N domain ASQ44_RS01025 PF00919 Uncharacterized protein family UPF0004 ASQ44_RS01025 PF01938 TRAM domain ASQ44_RS01025 PF04055 Radical SAM superfamily ASQ44_RS01030 PF00905 Penicillin binding protein transpeptidase domain ASQ44_RS01030 PF00912 Transglycosylase ASQ44_RS01030 PF17092 Penicillin-binding protein OB-like domain ASQ44_RS01065 PF07992 Pyridine nucleotide-disulphide oxidoreductase ASQ44_RS01065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ASQ44_RS01070 PF00213 ATP synthase delta (OSCP) subunit ASQ44_RS01075 PF02874 ATP synthase alpha/beta family, beta-barrel domain ASQ44_RS01075 PF00306 ATP synthase alpha/beta chain, C terminal domain ASQ44_RS01075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ASQ44_RS01080 PF00231 ATP synthase ASQ44_RS01085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ASQ44_RS01085 PF02874 ATP synthase alpha/beta family, beta-barrel domain ASQ44_RS01090 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ASQ44_RS01095 PF00330 Aconitase family (aconitate hydratase) ASQ44_RS01095 PF00694 Aconitase C-terminal domain ASQ44_RS01105 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ASQ44_RS01105 PF00384 Molybdopterin oxidoreductase ASQ44_RS01105 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ASQ44_RS01110 PF00146 NADH dehydrogenase ASQ44_RS01115 PF12838 4Fe-4S dicluster domain ASQ44_RS01135 PF00083 Sugar (and other) transporter ASQ44_RS01135 PF07690 Major Facilitator Superfamily ASQ44_RS01140 PF05164 Cell division protein ZapA ASQ44_RS01145 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ASQ44_RS01150 PF13464 Domain of unknown function (DUF4115) ASQ44_RS01155 PF05088 Bacterial NAD-glutamate dehydrogenase ASQ44_RS01160 PF01926 50S ribosome-binding GTPase ASQ44_RS01160 PF10396 GTP-binding protein TrmE N-terminus ASQ44_RS01160 PF12631 MnmE helical domain ASQ44_RS01165 PF17544 Family of unknown function (DUF5460) ASQ44_RS01180 PF07690 Major Facilitator Superfamily ASQ44_RS01190 PF00665 Integrase core domain ASQ44_RS01190 PF02796 Helix-turn-helix domain of resolvase ASQ44_RS01195 PF13737 Transposase DDE domain ASQ44_RS01200 PF13291 ACT domain ASQ44_RS01200 PF04607 Region found in RelA / SpoT proteins ASQ44_RS01200 PF02824 TGS domain ASQ44_RS01205 PF00083 Sugar (and other) transporter ASQ44_RS01205 PF07690 Major Facilitator Superfamily ASQ44_RS01210 PF10672 S-adenosylmethionine-dependent methyltransferase ASQ44_RS01210 PF17785 PUA-like domain ASQ44_RS01220 PF00154 recA bacterial DNA recombination protein ASQ44_RS01230 PF00550 Phosphopantetheine attachment site ASQ44_RS01235 PF00109 Beta-ketoacyl synthase, N-terminal domain ASQ44_RS01235 PF02801 Beta-ketoacyl synthase, C-terminal domain ASQ44_RS01240 PF00005 ABC transporter ASQ44_RS01240 PF16326 ABC transporter C-terminal domain ASQ44_RS01240 PF12848 ABC transporter ASQ44_RS01255 PF13635 Domain of unknown function (DUF4143) ASQ44_RS01255 PF13173 AAA domain ASQ44_RS01260 PF00625 Guanylate kinase ASQ44_RS01285 PF00691 OmpA family ASQ44_RS01290 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ASQ44_RS01290 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ASQ44_RS01295 PF01783 Ribosomal L32p protein family ASQ44_RS01305 PF02881 SRP54-type protein, helical bundle domain ASQ44_RS01305 PF00448 SRP54-type protein, GTPase domain ASQ44_RS01310 PF01367 5'-3' exonuclease, C-terminal SAM fold ASQ44_RS01310 PF00476 DNA polymerase family A ASQ44_RS01310 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ASQ44_RS01335 PF07733 Bacterial DNA polymerase III alpha NTPase domain ASQ44_RS01335 PF02811 PHP domain ASQ44_RS01335 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ASQ44_RS01335 PF14579 Helix-hairpin-helix motif ASQ44_RS01340 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ASQ44_RS01340 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ASQ44_RS01340 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ASQ44_RS01350 PF07690 Major Facilitator Superfamily ASQ44_RS01355 PF00902 Sec-independent protein translocase protein (TatC) ASQ44_RS01360 PF02403 Seryl-tRNA synthetase N-terminal domain ASQ44_RS01360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ASQ44_RS01365 PF02390 Putative methyltransferase ASQ44_RS01365 PF05175 Methyltransferase small domain ASQ44_RS01365 PF17827 PrmC N-terminal domain ASQ44_RS01370 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ASQ44_RS01380 PF03741 Integral membrane protein TerC family ASQ44_RS01390 PF13847 Methyltransferase domain ASQ44_RS01390 PF10119 Predicted methyltransferase regulatory domain ASQ44_RS01395 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system ASQ44_RS01400 PF00145 C-5 cytosine-specific DNA methylase ASQ44_RS01400 PF01381 Helix-turn-helix ASQ44_RS01405 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ASQ44_RS01410 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ASQ44_RS01415 PF00361 Proton-conducting membrane transporter ASQ44_RS01415 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ASQ44_RS01420 PF00361 Proton-conducting membrane transporter ASQ44_RS01430 PF00005 ABC transporter ASQ44_RS01445 PF00696 Amino acid kinase family ASQ44_RS01450 PF01016 Ribosomal L27 protein ASQ44_RS01455 PF00829 Ribosomal prokaryotic L21 protein ASQ44_RS01460 PF04608 Phosphatidylglycerophosphatase A ASQ44_RS01465 PF02416 mttA/Hcf106 family ASQ44_RS01470 PF13458 Periplasmic binding protein ASQ44_RS01475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ASQ44_RS01505 PF00633 Helix-hairpin-helix motif ASQ44_RS01505 PF10576 Iron-sulfur binding domain of endonuclease III ASQ44_RS01505 PF00730 HhH-GPD superfamily base excision DNA repair protein ASQ44_RS01510 PF00462 Glutaredoxin ASQ44_RS01515 PF02230 Phospholipase/Carboxylesterase ASQ44_RS01520 PF00464 Serine hydroxymethyltransferase ASQ44_RS01525 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ASQ44_RS01525 PF04055 Radical SAM superfamily ASQ44_RS01530 PF02130 Uncharacterized protein family UPF0054 ASQ44_RS01535 PF03471 Transporter associated domain ASQ44_RS01535 PF00571 CBS domain ASQ44_RS01555 PF03219 TLC ATP/ADP transporter ASQ44_RS01610 PF12796 Ankyrin repeats (3 copies) ASQ44_RS01660 PF00698 Acyl transferase domain ASQ44_RS01675 PF12705 PD-(D/E)XK nuclease superfamily ASQ44_RS01675 PF13361 UvrD-like helicase C-terminal domain ASQ44_RS01675 PF00580 UvrD/REP helicase N-terminal domain ASQ44_RS01680 PF02104 SURF1 family ASQ44_RS01685 PF00929 Exonuclease ASQ44_RS01690 PF01121 Dephospho-CoA kinase ASQ44_RS01705 PF00075 RNase H ASQ44_RS01710 PF05071 NADH ubiquinone oxidoreductase subunit NDUFA12 ASQ44_RS01750 PF01702 Queuine tRNA-ribosyltransferase ASQ44_RS01755 PF03120 NAD-dependent DNA ligase OB-fold domain ASQ44_RS01755 PF12826 Helix-hairpin-helix motif ASQ44_RS01755 PF01653 NAD-dependent DNA ligase adenylation domain ASQ44_RS01755 PF00533 BRCA1 C Terminus (BRCT) domain ASQ44_RS01770 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ASQ44_RS01780 PF00578 AhpC/TSA family ASQ44_RS01785 PF00216 Bacterial DNA-binding protein ASQ44_RS01795 PF00933 Glycosyl hydrolase family 3 N terminal domain ASQ44_RS01800 PF13291 ACT domain ASQ44_RS01800 PF04607 Region found in RelA / SpoT proteins ASQ44_RS01800 PF02824 TGS domain ASQ44_RS01805 PF12334 Rickettsia outer membrane protein B ASQ44_RS01805 PF03797 Autotransporter beta-domain ASQ44_RS01825 PF01578 Cytochrome C assembly protein ASQ44_RS01825 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ASQ44_RS01830 PF03471 Transporter associated domain ASQ44_RS01830 PF00571 CBS domain ASQ44_RS01830 PF01595 Cyclin M transmembrane N-terminal domain ASQ44_RS01840 PF00005 ABC transporter ASQ44_RS01845 PF02687 FtsX-like permease family ASQ44_RS01845 PF12704 MacB-like periplasmic core domain ASQ44_RS01850 PF07690 Major Facilitator Superfamily ASQ44_RS01855 PF10880 Protein of unknown function (DUF2673) ASQ44_RS01860 PF00664 ABC transporter transmembrane region ASQ44_RS01860 PF00005 ABC transporter ASQ44_RS01875 PF06508 Queuosine biosynthesis protein QueC ASQ44_RS01885 PF06689 ClpX C4-type zinc finger ASQ44_RS01885 PF07724 AAA domain (Cdc48 subfamily) ASQ44_RS01885 PF10431 C-terminal, D2-small domain, of ClpB protein ASQ44_RS01910 PF02646 RmuC family ASQ44_RS01920 PF04991 LicD family ASQ44_RS01925 PF08264 Anticodon-binding domain of tRNA ASQ44_RS01925 PF00133 tRNA synthetases class I (I, L, M and V) ASQ44_RS01940 PF01040 UbiA prenyltransferase family ASQ44_RS01945 PF07690 Major Facilitator Superfamily ASQ44_RS01950 PF02223 Thymidylate kinase ASQ44_RS01955 PF08264 Anticodon-binding domain of tRNA ASQ44_RS01955 PF09334 tRNA synthetases class I (M) ASQ44_RS01960 PF01026 TatD related DNase ASQ44_RS01995 PF06827 Zinc finger found in FPG and IleRS ASQ44_RS01995 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ASQ44_RS01995 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ASQ44_RS02000 PF01209 ubiE/COQ5 methyltransferase family ASQ44_RS02005 PF03109 ABC1 family ASQ44_RS02030 PF13635 Domain of unknown function (DUF4143) ASQ44_RS02030 PF13173 AAA domain ASQ44_RS02035 PF01926 50S ribosome-binding GTPase ASQ44_RS02035 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ASQ44_RS02045 PF03372 Endonuclease/Exonuclease/phosphatase family ASQ44_RS02060 PF13742 OB-fold nucleic acid binding domain ASQ44_RS02060 PF02601 Exonuclease VII, large subunit ASQ44_RS02070 PF04453 LPS transport system D ASQ44_RS02070 PF03968 OstA-like protein ASQ44_RS02080 PF00398 Ribosomal RNA adenine dimethylase ASQ44_RS02090 PF00313 'Cold-shock' DNA-binding domain ASQ44_RS02095 PF00270 DEAD/DEAH box helicase ASQ44_RS02095 PF00271 Helicase conserved C-terminal domain ASQ44_RS02100 PF07690 Major Facilitator Superfamily ASQ44_RS02105 PF01106 NifU-like domain ASQ44_RS02125 PF12327 FtsZ family, C-terminal domain ASQ44_RS02125 PF00091 Tubulin/FtsZ family, GTPase domain ASQ44_RS02140 PF00206 Lyase ASQ44_RS02140 PF10415 Fumarase C C-terminus ASQ44_RS02150 PF00588 SpoU rRNA Methylase family ASQ44_RS02150 PF08032 RNA 2'-O ribose methyltransferase substrate binding ASQ44_RS02165 PF03144 Elongation factor Tu domain 2 ASQ44_RS02165 PF00009 Elongation factor Tu GTP binding domain ASQ44_RS02165 PF03143 Elongation factor Tu C-terminal domain ASQ44_RS02170 PF00338 Ribosomal protein S10p/S20e ASQ44_RS02175 PF00297 Ribosomal protein L3 ASQ44_RS02180 PF00573 Ribosomal protein L4/L1 family ASQ44_RS02185 PF00276 Ribosomal protein L23 ASQ44_RS02190 PF00181 Ribosomal Proteins L2, RNA binding domain ASQ44_RS02190 PF03947 Ribosomal Proteins L2, C-terminal domain ASQ44_RS02195 PF00203 Ribosomal protein S19 ASQ44_RS02200 PF00237 Ribosomal protein L22p/L17e ASQ44_RS02205 PF00189 Ribosomal protein S3, C-terminal domain ASQ44_RS02205 PF07650 KH domain ASQ44_RS02210 PF00252 Ribosomal protein L16p/L10e ASQ44_RS02215 PF00831 Ribosomal L29 protein ASQ44_RS02220 PF00366 Ribosomal protein S17 ASQ44_RS02225 PF00238 Ribosomal protein L14p/L23e ASQ44_RS02230 PF00467 KOW motif ASQ44_RS02230 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ASQ44_RS02235 PF00673 ribosomal L5P family C-terminus ASQ44_RS02235 PF00281 Ribosomal protein L5 ASQ44_RS02240 PF00253 Ribosomal protein S14p/S29e ASQ44_RS02245 PF00410 Ribosomal protein S8 ASQ44_RS02250 PF00347 Ribosomal protein L6 ASQ44_RS02255 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ASQ44_RS02260 PF03719 Ribosomal protein S5, C-terminal domain ASQ44_RS02260 PF00333 Ribosomal protein S5, N-terminal domain ASQ44_RS02265 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ASQ44_RS02270 PF00344 SecY translocase ASQ44_RS02275 PF05191 Adenylate kinase, active site lid ASQ44_RS02280 PF00416 Ribosomal protein S13/S18 ASQ44_RS02285 PF00411 Ribosomal protein S11 ASQ44_RS02290 PF01000 RNA polymerase Rpb3/RpoA insert domain ASQ44_RS02290 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ASQ44_RS02290 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ASQ44_RS02295 PF01196 Ribosomal protein L17 ASQ44_RS02300 PF01649 Ribosomal protein S20 ASQ44_RS02335 PF01594 AI-2E family transporter ASQ44_RS02340 PF01025 GrpE ASQ44_RS02345 PF01138 3' exoribonuclease family, domain 1 ASQ44_RS02345 PF03725 3' exoribonuclease family, domain 2 ASQ44_RS02370 PF00166 Chaperonin 10 Kd subunit ASQ44_RS02375 PF00118 TCP-1/cpn60 chaperonin family ASQ44_RS02380 PF13291 ACT domain ASQ44_RS02380 PF04607 Region found in RelA / SpoT proteins ASQ44_RS02380 PF02824 TGS domain ASQ44_RS02400 PF00749 tRNA synthetases class I (E and Q), catalytic domain ASQ44_RS02410 PF00950 ABC 3 transport family ASQ44_RS02420 PF01553 Acyltransferase ASQ44_RS02420 PF00501 AMP-binding enzyme ASQ44_RS02430 PF01039 Carboxyl transferase domain ASQ44_RS02435 PF02785 Biotin carboxylase C-terminal domain ASQ44_RS02435 PF00289 Biotin carboxylase, N-terminal domain ASQ44_RS02435 PF00364 Biotin-requiring enzyme ASQ44_RS02435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ASQ44_RS02435 PF18140 Propionyl-coenzyme A carboxylase BT domain ASQ44_RS02440 PF13606 Ankyrin repeat ASQ44_RS02450 PF08264 Anticodon-binding domain of tRNA ASQ44_RS02450 PF00133 tRNA synthetases class I (I, L, M and V) ASQ44_RS02470 PF01165 Ribosomal protein S21 ASQ44_RS02475 PF00512 His Kinase A (phospho-acceptor) domain ASQ44_RS02475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ASQ44_RS02475 PF00672 HAMP domain ASQ44_RS02510 PF01544 CorA-like Mg2+ transporter protein ASQ44_RS02535 PF00825 Ribonuclease P ASQ44_RS02540 PF00468 Ribosomal protein L34 ASQ44_RS02545 PF00453 Ribosomal protein L20 ASQ44_RS02550 PF01632 Ribosomal protein L35 ASQ44_RS02555 PF04055 Radical SAM superfamily ASQ44_RS02570 PF14693 Ribosomal protein TL5, C-terminal domain ASQ44_RS02570 PF01386 Ribosomal L25p family ASQ44_RS02575 PF01195 Peptidyl-tRNA hydrolase ASQ44_RS02590 PF06071 Protein of unknown function (DUF933) ASQ44_RS02590 PF01926 50S ribosome-binding GTPase ASQ44_RS02635 PF00308 Bacterial dnaA protein ASQ44_RS02635 PF08299 Bacterial dnaA protein helix-turn-helix ASQ44_RS02635 PF11638 DnaA N-terminal domain ASQ44_RS02640 PF00581 Rhodanese-like domain ASQ44_RS02650 PF00271 Helicase conserved C-terminal domain ASQ44_RS02650 PF02559 CarD-like/TRCF domain ASQ44_RS02650 PF03461 TRCF domain ASQ44_RS02650 PF00270 DEAD/DEAH box helicase ASQ44_RS02650 PF17757 UvrB interaction domain ASQ44_RS02655 PF08245 Mur ligase middle domain ASQ44_RS02655 PF02875 Mur ligase family, glutamate ligase domain ASQ44_RS02655 PF01225 Mur ligase family, catalytic domain ASQ44_RS02660 PF08245 Mur ligase middle domain ASQ44_RS02660 PF01225 Mur ligase family, catalytic domain ASQ44_RS02660 PF02875 Mur ligase family, glutamate ligase domain ASQ44_RS02665 PF00953 Glycosyl transferase family 4 ASQ44_RS02710 PF00270 DEAD/DEAH box helicase ASQ44_RS02710 PF00271 Helicase conserved C-terminal domain ASQ44_RS02710 PF17191 RecG wedge domain ASQ44_RS02720 PF05857 TraX protein ASQ44_RS02725 PF03023 Lipid II flippase MurJ ASQ44_RS02730 PF00719 Inorganic pyrophosphatase ASQ44_RS02735 PF03100 CcmE ASQ44_RS02740 PF02630 SCO1/SenC ASQ44_RS02745 PF02355 Protein export membrane protein ASQ44_RS02750 PF02699 Preprotein translocase subunit ASQ44_RS02775 PF03448 MgtE intracellular N domain ASQ44_RS02775 PF00571 CBS domain ASQ44_RS02775 PF01769 Divalent cation transporter ASQ44_RS02785 PF00293 NUDIX domain ASQ44_RS02785 PF13344 Haloacid dehalogenase-like hydrolase ASQ44_RS02790 PF00204 DNA gyrase B ASQ44_RS02790 PF00986 DNA gyrase B subunit, carboxyl terminus ASQ44_RS02790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ASQ44_RS02790 PF01751 Toprim domain ASQ44_RS02795 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ASQ44_RS02800 PF01192 RNA polymerase Rpb6 ASQ44_RS02805 PF01648 4'-phosphopantetheinyl transferase superfamily ASQ44_RS02815 PF07517 SecA DEAD-like domain ASQ44_RS02815 PF02810 SEC-C motif ASQ44_RS02815 PF01043 SecA preprotein cross-linking domain ASQ44_RS02815 PF07516 SecA Wing and Scaffold domain ASQ44_RS02855 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ASQ44_RS02855 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ASQ44_RS02870 PF04314 Copper chaperone PCu(A)C ASQ44_RS02875 PF08459 UvrC Helix-hairpin-helix N-terminal ASQ44_RS02875 PF02151 UvrB/uvrC motif ASQ44_RS02875 PF01541 GIY-YIG catalytic domain ASQ44_RS02885 PF00474 Sodium:solute symporter family ASQ44_RS02895 PF02381 MraZ protein, putative antitoxin-like ASQ44_RS02900 PF01795 MraW methylase family ASQ44_RS02910 PF00905 Penicillin binding protein transpeptidase domain ASQ44_RS02910 PF03717 Penicillin-binding Protein dimerisation domain ASQ44_RS02920 PF03717 Penicillin-binding Protein dimerisation domain ASQ44_RS02920 PF00905 Penicillin binding protein transpeptidase domain ASQ44_RS02935 PF02954 Bacterial regulatory protein, Fis family ASQ44_RS02935 PF00158 Sigma-54 interaction domain ASQ44_RS02935 PF00072 Response regulator receiver domain ASQ44_RS02945 PF01494 FAD binding domain ASQ44_RS03055 PF00579 tRNA synthetases class I (W and Y) ASQ44_RS03060 PF01479 S4 domain ASQ44_RS03060 PF01728 FtsJ-like methyltransferase ASQ44_RS03065 PF02082 Transcriptional regulator ASQ44_RS03080 PF02576 RimP N-terminal domain ASQ44_RS03080 PF17384 RimP C-terminal SH3 domain ASQ44_RS03085 PF00575 S1 RNA binding domain ASQ44_RS03085 PF08529 NusA N-terminal domain ASQ44_RS03085 PF13184 NusA-like KH domain ASQ44_RS03090 PF00009 Elongation factor Tu GTP binding domain ASQ44_RS03090 PF04760 Translation initiation factor IF-2, N-terminal region ASQ44_RS03090 PF11987 Translation-initiation factor 2 ASQ44_RS03100 PF00814 Glycoprotease family ASQ44_RS03110 PF02565 Recombination protein O C terminal ASQ44_RS03110 PF11967 Recombination protein O N terminal ASQ44_RS03120 PF18073 Rubredoxin metal binding domain ASQ44_RS03135 PF01479 S4 domain ASQ44_RS03135 PF00849 RNA pseudouridylate synthase ASQ44_RS03150 PF00772 DnaB-like helicase N terminal domain ASQ44_RS03150 PF03796 DnaB-like helicase C terminal domain ASQ44_RS03155 PF02441 Flavoprotein ASQ44_RS03160 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ASQ44_RS03160 PF18074 Primosomal protein N C-terminal domain ASQ44_RS03160 PF17764 3′ DNA-binding domain (3′BD) ASQ44_RS03160 PF00271 Helicase conserved C-terminal domain ASQ44_RS03160 PF00270 DEAD/DEAH box helicase ASQ44_RS03170 PF00490 Delta-aminolevulinic acid dehydratase ASQ44_RS03175 PF18640 LepB N-terminal domain ASQ44_RS03180 PF00361 Proton-conducting membrane transporter ASQ44_RS03210 PF06691 Protein of unknown function (DUF1189) ASQ44_RS03230 PF02082 Transcriptional regulator ASQ44_RS03235 PF00266 Aminotransferase class-V ASQ44_RS03240 PF00266 Aminotransferase class-V ASQ44_RS03245 PF01592 NifU-like N terminal domain ASQ44_RS03250 PF01521 Iron-sulphur cluster biosynthesis ASQ44_RS03265 PF13520 Amino acid permease ASQ44_RS03270 PF01171 PP-loop family ASQ44_RS03285 PF00348 Polyprenyl synthetase ASQ44_RS03300 PF03219 TLC ATP/ADP transporter ASQ44_RS03330 PF07690 Major Facilitator Superfamily ASQ44_RS03340 PF01810 LysE type translocator ASQ44_RS03360 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ASQ44_RS03375 PF10116 Protein required for attachment to host cells ASQ44_RS03385 PF00579 tRNA synthetases class I (W and Y) ASQ44_RS03410 PF03900 Porphobilinogen deaminase, C-terminal domain ASQ44_RS03410 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ASQ44_RS03425 PF00072 Response regulator receiver domain ASQ44_RS03425 PF00512 His Kinase A (phospho-acceptor) domain ASQ44_RS03425 PF01627 Hpt domain ASQ44_RS03425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ASQ44_RS03425 PF00672 HAMP domain ASQ44_RS03425 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ASQ44_RS03450 PF01571 Aminomethyltransferase folate-binding domain ASQ44_RS03460 PF01612 3'-5' exonuclease ASQ44_RS03460 PF00570 HRDC domain ASQ44_RS03470 PF01812 5-formyltetrahydrofolate cyclo-ligase family ASQ44_RS03475 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ASQ44_RS03475 PF07992 Pyridine nucleotide-disulphide oxidoreductase ASQ44_RS03480 PF08241 Methyltransferase domain ASQ44_RS03495 PF02086 D12 class N6 adenine-specific DNA methyltransferase ASQ44_RS03510 PF10811 Protein of unknown function (DUF2532) ASQ44_RS03535 PF00444 Ribosomal protein L36 ASQ44_RS03540 PF01709 Transcriptional regulator ASQ44_RS03545 PF00132 Bacterial transferase hexapeptide (six repeats) ASQ44_RS03545 PF12804 MobA-like NTP transferase domain ASQ44_RS03580 PF17761 DUF1016 N-terminal domain ASQ44_RS03580 PF06250 YhcG PDDEXK nuclease domain ASQ44_RS03600 PF01070 FMN-dependent dehydrogenase ASQ44_RS03605 PF00872 Transposase, Mutator family ASQ44_RS03620 PF07516 SecA Wing and Scaffold domain ASQ44_RS03620 PF07517 SecA DEAD-like domain ASQ44_RS03620 PF01043 SecA preprotein cross-linking domain ASQ44_RS03645 PF00589 Phage integrase family ASQ44_RS03645 PF14659 Phage integrase, N-terminal SAM-like domain ASQ44_RS03645 PF13356 Arm DNA-binding domain ASQ44_RS03690 PF06834 TraU protein ASQ44_RS03695 PF09673 Type-F conjugative transfer system pilin assembly protein ASQ44_RS03700 PF06986 Type-1V conjugative transfer system mating pair stabilisation ASQ44_RS03710 PF06122 Conjugative relaxosome accessory transposon protein ASQ44_RS03725 PF10412 Type IV secretion-system coupling protein DNA-binding domain ASQ44_RS03725 PF12615 F sex factor protein N terminal ASQ44_RS03730 PF04754 Putative transposase, YhgA-like ASQ44_RS03755 PF01797 Transposase IS200 like ASQ44_RS03760 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ASQ44_RS03760 PF01348 Type II intron maturase ASQ44_RS03775 PF08946 Osmosensory transporter coiled coil ASQ44_RS03775 PF00083 Sugar (and other) transporter ASQ44_RS03785 PF13291 ACT domain ASQ44_RS03785 PF04607 Region found in RelA / SpoT proteins ASQ44_RS03785 PF02824 TGS domain ASQ44_RS03800 PF00672 HAMP domain ASQ44_RS03800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ASQ44_RS03800 PF00512 His Kinase A (phospho-acceptor) domain ASQ44_RS03800 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ASQ44_RS03800 PF00072 Response regulator receiver domain ASQ44_RS03800 PF01627 Hpt domain ASQ44_RS03805 PF02086 D12 class N6 adenine-specific DNA methyltransferase ASQ44_RS03820 PF00574 Clp protease ASQ44_RS03825 PF00575 S1 RNA binding domain ASQ44_RS03830 PF02224 Cytidylate kinase ASQ44_RS03850 PF02086 D12 class N6 adenine-specific DNA methyltransferase ASQ44_RS03860 PF13291 ACT domain ASQ44_RS03860 PF04607 Region found in RelA / SpoT proteins ASQ44_RS03860 PF02824 TGS domain ASQ44_RS03865 PF00931 NB-ARC domain ASQ44_RS03865 PF00486 Transcriptional regulatory protein, C terminal ASQ44_RS03865 PF03704 Bacterial transcriptional activator domain ASQ44_RS03870 PF04607 Region found in RelA / SpoT proteins ASQ44_RS03870 PF13291 ACT domain ASQ44_RS03870 PF02824 TGS domain ASQ44_RS03885 PF04754 Putative transposase, YhgA-like ASQ44_RS03890 PF01443 Viral (Superfamily 1) RNA helicase ASQ44_RS03890 PF03389 MobA/MobL family ASQ44_RS03890 PF17841 BID domain of Bartonella effector protein (Bep) ASQ44_RS03905 PF13291 ACT domain ASQ44_RS03905 PF04607 Region found in RelA / SpoT proteins ASQ44_RS03905 PF02824 TGS domain ASQ44_RS03955 PF06986 Type-1V conjugative transfer system mating pair stabilisation ASQ44_RS03965 PF06834 TraU protein ASQ44_RS03980 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer ASQ44_RS04020 PF13356 Arm DNA-binding domain ASQ44_RS04020 PF00589 Phage integrase family ASQ44_RS04040 PF00216 Bacterial DNA-binding protein ASQ44_RS04045 PF01343 Peptidase family S49 ASQ44_RS04050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ASQ44_RS04050 PF07498 Rho termination factor, N-terminal domain ASQ44_RS04050 PF07497 Rho termination factor, RNA-binding domain ASQ44_RS04055 PF13847 Methyltransferase domain ASQ44_RS04060 PF02272 DHHA1 domain ASQ44_RS04060 PF17768 RecJ OB domain ASQ44_RS04060 PF01368 DHH family ASQ44_RS04065 PF00472 RF-1 domain ASQ44_RS04065 PF03462 PCRF domain ASQ44_RS04070 PF02817 e3 binding domain ASQ44_RS04070 PF00364 Biotin-requiring enzyme ASQ44_RS04070 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ASQ44_RS04075 PF05198 Translation initiation factor IF-3, N-terminal domain ASQ44_RS04075 PF00707 Translation initiation factor IF-3, C-terminal domain ASQ44_RS04080 PF10097 Predicted membrane protein (DUF2335) ASQ44_RS04135 PF02237 Biotin protein ligase C terminal domain ASQ44_RS04135 PF03099 Biotin/lipoate A/B protein ligase family ASQ44_RS04145 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ASQ44_RS04145 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ASQ44_RS04150 PF08245 Mur ligase middle domain ASQ44_RS04150 PF02875 Mur ligase family, glutamate ligase domain ASQ44_RS04155 PF02632 BioY family ASQ44_RS04160 PF09825 Biotin-protein ligase, N terminal ASQ44_RS04170 PF00391 PEP-utilising enzyme, mobile domain ASQ44_RS04170 PF02896 PEP-utilising enzyme, TIM barrel domain ASQ44_RS04170 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ASQ44_RS04180 PF00596 Class II Aldolase and Adducin N-terminal domain ASQ44_RS04200 PF02578 Multi-copper polyphenol oxidoreductase laccase ASQ44_RS04210 PF03631 Virulence factor BrkB ASQ44_RS04215 PF01381 Helix-turn-helix ASQ44_RS04220 PF12574 120 KDa Rickettsia surface antigen ASQ44_RS04230 PF03219 TLC ATP/ADP transporter ASQ44_RS04235 PF01509 TruB family pseudouridylate synthase (N terminal domain) ASQ44_RS04235 PF16198 tRNA pseudouridylate synthase B C-terminal domain ASQ44_RS04240 PF00312 Ribosomal protein S15 ASQ44_RS04245 PF03725 3' exoribonuclease family, domain 2 ASQ44_RS04245 PF00575 S1 RNA binding domain ASQ44_RS04245 PF00013 KH domain ASQ44_RS04245 PF01138 3' exoribonuclease family, domain 1 ASQ44_RS04245 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ASQ44_RS04250 PF01380 SIS domain ASQ44_RS04250 PF00571 CBS domain ASQ44_RS04255 PF06835 Lipopolysaccharide-assembly, LptC-related ASQ44_RS04260 PF03968 OstA-like protein ASQ44_RS04265 PF00005 ABC transporter ASQ44_RS04270 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ASQ44_RS04270 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ASQ44_RS04270 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ASQ44_RS04270 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ASQ44_RS04285 PF00805 Pentapeptide repeats (8 copies) ASQ44_RS04290 PF00805 Pentapeptide repeats (8 copies) ASQ44_RS04295 PF00805 Pentapeptide repeats (8 copies) ASQ44_RS04300 PF00805 Pentapeptide repeats (8 copies) ASQ44_RS04305 PF00268 Ribonucleotide reductase, small chain ASQ44_RS04315 PF03477 ATP cone domain ASQ44_RS04315 PF00317 Ribonucleotide reductase, all-alpha domain ASQ44_RS04315 PF02867 Ribonucleotide reductase, barrel domain ASQ44_RS04370 PF07992 Pyridine nucleotide-disulphide oxidoreductase ASQ44_RS04375 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ASQ44_RS04375 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ASQ44_RS04385 PF00132 Bacterial transferase hexapeptide (six repeats) ASQ44_RS04390 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus ASQ44_RS04390 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ASQ44_RS04415 PF02190 ATP-dependent protease La (LON) substrate-binding domain ASQ44_RS04415 PF05362 Lon protease (S16) C-terminal proteolytic domain ASQ44_RS04415 PF00004 ATPase family associated with various cellular activities (AAA) ASQ44_RS04420 PF00585 C-terminal regulatory domain of Threonine dehydratase ASQ44_RS04420 PF00291 Pyridoxal-phosphate dependent enzyme ASQ44_RS04430 PF13361 UvrD-like helicase C-terminal domain ASQ44_RS04430 PF00580 UvrD/REP helicase N-terminal domain ASQ44_RS04435 PF00535 Glycosyl transferase family 2 ASQ44_RS04445 PF00171 Aldehyde dehydrogenase family ASQ44_RS04455 PF07992 Pyridine nucleotide-disulphide oxidoreductase ASQ44_RS04460 PF12697 Alpha/beta hydrolase family ASQ44_RS04475 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ASQ44_RS04475 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ASQ44_RS04480 PF12706 Beta-lactamase superfamily domain ASQ44_RS04480 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ASQ44_RS04480 PF17770 Ribonuclease J C-terminal domain ASQ44_RS04485 PF01513 ATP-NAD kinase ASQ44_RS04505 PF02132 RecR protein ASQ44_RS04505 PF13662 Toprim domain ASQ44_RS04510 PF06271 RDD family ASQ44_RS04520 PF02033 Ribosome-binding factor A ASQ44_RS04525 PF04280 Tim44-like domain ASQ44_RS04530 PF00326 Prolyl oligopeptidase family ASQ44_RS04545 PF00549 CoA-ligase ASQ44_RS04545 PF08442 ATP-grasp domain ASQ44_RS04550 PF02629 CoA binding domain ASQ44_RS04550 PF00549 CoA-ligase ASQ44_RS04560 PF01668 SmpB protein ASQ44_RS04565 PF00701 Dihydrodipicolinate synthetase family ASQ44_RS04570 PF01063 Amino-transferase class IV ASQ44_RS04575 PF00486 Transcriptional regulatory protein, C terminal ASQ44_RS04575 PF00072 Response regulator receiver domain ASQ44_RS04580 PF00672 HAMP domain ASQ44_RS04580 PF00512 His Kinase A (phospho-acceptor) domain ASQ44_RS04580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ASQ44_RS04585 PF01255 Putative undecaprenyl diphosphate synthase ASQ44_RS04595 PF04977 Septum formation initiator ASQ44_RS04600 PF01612 3'-5' exonuclease ASQ44_RS04600 PF00570 HRDC domain ASQ44_RS04605 PF00133 tRNA synthetases class I (I, L, M and V) ASQ44_RS04605 PF13603 Leucyl-tRNA synthetase, Domain 2 ASQ44_RS04605 PF08264 Anticodon-binding domain of tRNA ASQ44_RS04610 PF12100 Domain of unknown function (DUF3576) ASQ44_RS04620 PF00712 DNA polymerase III beta subunit, N-terminal domain ASQ44_RS04620 PF02768 DNA polymerase III beta subunit, C-terminal domain ASQ44_RS04620 PF02767 DNA polymerase III beta subunit, central domain ASQ44_RS04625 PF03483 B3/4 domain ASQ44_RS04625 PF01588 Putative tRNA binding domain ASQ44_RS04625 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ASQ44_RS04625 PF03147 Ferredoxin-fold anticodon binding domain ASQ44_RS04625 PF03484 tRNA synthetase B5 domain ASQ44_RS04630 PF01409 tRNA synthetases class II core domain (F) ASQ44_RS04630 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ASQ44_RS04635 PF00919 Uncharacterized protein family UPF0004 ASQ44_RS04635 PF04055 Radical SAM superfamily ASQ44_RS04640 PF01678 Diaminopimelate epimerase ASQ44_RS04650 PF00534 Glycosyl transferases group 1 ASQ44_RS04670 PF00873 AcrB/AcrD/AcrF family ASQ44_RS04690 PF00873 AcrB/AcrD/AcrF family ASQ44_RS04695 PF00873 AcrB/AcrD/AcrF family ASQ44_RS04705 PF03033 Glycosyltransferase family 28 N-terminal domain ASQ44_RS04705 PF04101 Glycosyltransferase family 28 C-terminal domain ASQ44_RS04710 PF01098 Cell cycle protein ASQ44_RS04715 PF08245 Mur ligase middle domain ASQ44_RS04725 PF01252 Signal peptidase (SPase) II ASQ44_RS04730 PF04225 Opacity-associated protein A LysM-like domain ASQ44_RS04730 PF01551 Peptidase family M23 ASQ44_RS04735 PF01467 Cytidylyltransferase-like ASQ44_RS04735 PF00294 pfkB family carbohydrate kinase ASQ44_RS04740 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ASQ44_RS04740 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ASQ44_RS04745 PF00115 Cytochrome C and Quinol oxidase polypeptide I ASQ44_RS04750 PF07722 Peptidase C26 ASQ44_RS04760 PF12705 PD-(D/E)XK nuclease superfamily ASQ44_RS04765 PF02016 LD-carboxypeptidase N-terminal domain ASQ44_RS04765 PF17676 LD-carboxypeptidase C-terminal domain ASQ44_RS04775 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ASQ44_RS04775 PF01464 Transglycosylase SLT domain ASQ44_RS04780 PF00692 dUTPase ASQ44_RS04785 PF06965 Na+/H+ antiporter 1 ASQ44_RS04785 PF01343 Peptidase family S49 ASQ44_RS04790 PF00578 AhpC/TSA family ASQ44_RS04795 PF00775 Dioxygenase ASQ44_RS04800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ASQ44_RS04805 PF13473 Cupredoxin-like domain ASQ44_RS04815 PF04279 Intracellular septation protein A ASQ44_RS04820 PF04972 BON domain ASQ44_RS04825 PF03330 Lytic transglycolase ASQ44_RS04830 PF00768 D-alanyl-D-alanine carboxypeptidase ASQ44_RS04830 PF07943 Penicillin-binding protein 5, C-terminal domain ASQ44_RS04835 PF07690 Major Facilitator Superfamily ASQ44_RS04840 PF00005 ABC transporter ASQ44_RS04840 PF00664 ABC transporter transmembrane region ASQ44_RS04845 PF05491 RuvB C-terminal winged helix domain ASQ44_RS04845 PF17864 RuvB AAA lid domain ASQ44_RS04845 PF05496 Holliday junction DNA helicase RuvB P-loop domain ASQ44_RS04865 PF01330 RuvA N terminal domain ASQ44_RS04865 PF07499 RuvA, C-terminal domain ASQ44_RS04875 PF12728 Helix-turn-helix domain ASQ44_RS04875 PF02661 Fic/DOC family ASQ44_RS04880 PF03129 Anticodon binding domain ASQ44_RS04880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ASQ44_RS04885 PF01227 GTP cyclohydrolase I ASQ44_RS04890 PF00115 Cytochrome C and Quinol oxidase polypeptide I ASQ44_RS04915 PF02348 Cytidylyltransferase ASQ44_RS04920 PF00117 Glutamine amidotransferase class-I ASQ44_RS04920 PF06418 CTP synthase N-terminus ASQ44_RS04925 PF03219 TLC ATP/ADP transporter ASQ44_RS04940 PF00056 lactate/malate dehydrogenase, NAD binding domain ASQ44_RS04940 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ASQ44_RS04980 PF07690 Major Facilitator Superfamily ASQ44_RS05000 PF03949 Malic enzyme, NAD binding domain ASQ44_RS05000 PF01515 Phosphate acetyl/butaryl transferase ASQ44_RS05000 PF00390 Malic enzyme, N-terminal domain ASQ44_RS05010 PF01921 tRNA synthetases class I (K) ASQ44_RS05030 PF00005 ABC transporter ASQ44_RS05035 PF02653 Branched-chain amino acid transport system / permease component ASQ44_RS05040 PF04392 ABC transporter substrate binding protein ASQ44_RS05045 PF01471 Putative peptidoglycan binding domain ASQ44_RS05045 PF01510 N-acetylmuramoyl-L-alanine amidase ASQ44_RS05055 PF00795 Carbon-nitrogen hydrolase ASQ44_RS05065 PF17422 Family of unknown function (DUF5410) ASQ44_RS05070 PF17422 Family of unknown function (DUF5410) ASQ44_RS05075 PF02899 Phage integrase, N-terminal SAM-like domain ASQ44_RS05075 PF00589 Phage integrase family ASQ44_RS05090 PF09923 Uncharacterized protein conserved in bacteria (DUF2155) ASQ44_RS05095 PF04932 O-Antigen ligase ASQ44_RS05100 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ASQ44_RS05105 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ASQ44_RS05110 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ASQ44_RS05115 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ASQ44_RS05130 PF01809 Putative membrane protein insertion efficiency factor ASQ44_RS05135 PF02245 Methylpurine-DNA glycosylase (MPG) ASQ44_RS05155 PF02609 Exonuclease VII small subunit ASQ44_RS05165 PF01782 RimM N-terminal domain ASQ44_RS05165 PF05239 PRC-barrel domain ASQ44_RS05190 PF01040 UbiA prenyltransferase family ASQ44_RS05195 PF00163 Ribosomal protein S4/S9 N-terminal domain ASQ44_RS05195 PF01479 S4 domain ASQ44_RS05215 PF00534 Glycosyl transferases group 1 ASQ44_RS05215 PF00862 Sucrose synthase ASQ44_RS05230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ASQ44_RS05235 PF00535 Glycosyl transferase family 2 ASQ44_RS05250 PF02350 UDP-N-acetylglucosamine 2-epimerase ASQ44_RS05255 PF02719 Polysaccharide biosynthesis protein ASQ44_RS05255 PF08485 Polysaccharide biosynthesis protein C-terminal ASQ44_RS05265 PF01381 Helix-turn-helix ASQ44_RS05270 PF03652 Holliday junction resolvase ASQ44_RS05275 PF00884 Sulfatase ASQ44_RS05275 PF08019 Phosphoethanolamine transferase EptA/EptB ASQ44_RS05285 PF01145 SPFH domain / Band 7 family ASQ44_RS05290 PF00578 AhpC/TSA family ASQ44_RS05290 PF10417 C-terminal domain of 1-Cys peroxiredoxin ASQ44_RS05300 PF17782 DprA winged helix domain ASQ44_RS05300 PF02481 DNA recombination-mediator protein A ASQ44_RS05305 PF01396 Topoisomerase DNA binding C4 zinc finger ASQ44_RS05305 PF13368 Topoisomerase C-terminal repeat ASQ44_RS05305 PF01751 Toprim domain ASQ44_RS05305 PF01131 DNA topoisomerase ASQ44_RS05310 PF00749 tRNA synthetases class I (E and Q), catalytic domain ASQ44_RS05330 PF11019 Protein of unknown function (DUF2608) ASQ44_RS05335 PF01491 Frataxin-like domain ASQ44_RS05340 PF02618 YceG-like family ASQ44_RS05350 PF02684 Lipid-A-disaccharide synthetase ASQ44_RS05370 PF01078 Magnesium chelatase, subunit ChlI ASQ44_RS05370 PF13335 Magnesium chelatase, subunit ChlI C-terminal ASQ44_RS05375 PF07724 AAA domain (Cdc48 subfamily) ASQ44_RS05375 PF00493 MCM P-loop domain ASQ44_RS05380 PF00227 Proteasome subunit ASQ44_RS05385 PF10947 Protein of unknown function (DUF2628) ASQ44_RS05390 PF01230 HIT domain ASQ44_RS05395 PF01118 Semialdehyde dehydrogenase, NAD binding domain ASQ44_RS05395 PF02774 Semialdehyde dehydrogenase, dimerisation domain ASQ44_RS05400 PF00664 ABC transporter transmembrane region ASQ44_RS05400 PF00005 ABC transporter ASQ44_RS05405 PF00529 HlyD membrane-fusion protein of T1SS ASQ44_RS05410 PF07690 Major Facilitator Superfamily ASQ44_RS05415 PF04607 Region found in RelA / SpoT proteins ASQ44_RS05415 PF13291 ACT domain ASQ44_RS05415 PF02824 TGS domain ASQ44_RS05425 PF02472 Biopolymer transport protein ExbD/TolR ASQ44_RS05430 PF01618 MotA/TolQ/ExbB proton channel family ASQ44_RS05460 PF12848 ABC transporter ASQ44_RS05460 PF00005 ABC transporter ASQ44_RS05465 PF00005 ABC transporter ASQ44_RS05465 PF12399 Branched-chain amino acid ATP-binding cassette transporter ASQ44_RS05470 PF03129 Anticodon binding domain ASQ44_RS05470 PF13393 Histidyl-tRNA synthetase ASQ44_RS05475 PF13520 Amino acid permease ASQ44_RS05490 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 ASQ44_RS05495 PF00140 Sigma-70 factor, region 1.2 ASQ44_RS05495 PF04542 Sigma-70 region 2 ASQ44_RS05495 PF04545 Sigma-70, region 4 ASQ44_RS05500 PF07676 WD40-like Beta Propeller Repeat ASQ44_RS05500 PF04052 TolB amino-terminal domain ASQ44_RS05505 PF02511 Thymidylate synthase complementing protein ASQ44_RS05520 PF02502 Ribose/Galactose Isomerase ASQ44_RS05525 PF01624 MutS domain I ASQ44_RS05525 PF00488 MutS domain V ASQ44_RS05525 PF05190 MutS family domain IV ASQ44_RS05525 PF05192 MutS domain III ASQ44_RS05525 PF05188 MutS domain II ASQ44_RS05530 PF00459 Inositol monophosphatase family ASQ44_RS05535 PF11019 Protein of unknown function (DUF2608) ASQ44_RS05540 PF11019 Protein of unknown function (DUF2608) ASQ44_RS05550 PF04860 Phage portal protein ASQ44_RS05575 PF02534 Type IV secretory system Conjugative DNA transfer ASQ44_RS05580 PF00437 Type II/IV secretion system protein ASQ44_RS05585 PF03743 Bacterial conjugation TrbI-like protein ASQ44_RS05590 PF03524 Conjugal transfer protein ASQ44_RS05595 PF04335 VirB8 protein ASQ44_RS05600 PF10913 Protein of unknown function (DUF2706) ASQ44_RS05615 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ASQ44_RS05620 PF00361 Proton-conducting membrane transporter ASQ44_RS05625 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ASQ44_RS05625 PF13244 Domain of unknown function (DUF4040) ASQ44_RS05625 PF00361 Proton-conducting membrane transporter ASQ44_RS05640 PF00361 Proton-conducting membrane transporter ASQ44_RS05645 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ASQ44_RS05645 PF00326 Prolyl oligopeptidase family ASQ44_RS05650 PF01098 Cell cycle protein ASQ44_RS05705 PF00009 Elongation factor Tu GTP binding domain ASQ44_RS05705 PF03144 Elongation factor Tu domain 2 ASQ44_RS05705 PF00679 Elongation factor G C-terminus ASQ44_RS05705 PF06421 GTP-binding protein LepA C-terminus ASQ44_RS05710 PF03462 PCRF domain ASQ44_RS05710 PF00472 RF-1 domain ASQ44_RS05720 PF06250 YhcG PDDEXK nuclease domain ASQ44_RS05720 PF17761 DUF1016 N-terminal domain ASQ44_RS05730 PF00011 Hsp20/alpha crystallin family ASQ44_RS05740 PF00033 Cytochrome b/b6/petB ASQ44_RS05740 PF02167 Cytochrome C1 family ASQ44_RS05740 PF00032 Cytochrome b(C-terminal)/b6/petD ASQ44_RS05750 PF00032 Cytochrome b(C-terminal)/b6/petD ASQ44_RS05750 PF00033 Cytochrome b/b6/petB ASQ44_RS05755 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ASQ44_RS05755 PF00355 Rieske [2Fe-2S] domain ASQ44_RS05760 PF10875 Protein of unknown function (DUF2670) ASQ44_RS05765 PF03379 CcmB protein ASQ44_RS05770 PF13244 Domain of unknown function (DUF4040) ASQ44_RS05770 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ASQ44_RS05770 PF00361 Proton-conducting membrane transporter ASQ44_RS05775 PF03334 Na+/H+ antiporter subunit ASQ44_RS05780 PF18324 Hypothetical protein TT1725 ASQ44_RS05780 PF00180 Isocitrate/isopropylmalate dehydrogenase ASQ44_RS05800 PF00009 Elongation factor Tu GTP binding domain ASQ44_RS05800 PF00679 Elongation factor G C-terminus ASQ44_RS05800 PF03144 Elongation factor Tu domain 2 ASQ44_RS05805 PF02780 Transketolase, C-terminal domain ASQ44_RS05805 PF02779 Transketolase, pyrimidine binding domain ASQ44_RS05810 PF00676 Dehydrogenase E1 component ASQ44_RS05815 PF03372 Endonuclease/Exonuclease/phosphatase family ASQ44_RS05820 PF00144 Beta-lactamase ASQ44_RS05820 PF11954 Domain of unknown function (DUF3471) ASQ44_RS05825 PF01479 S4 domain ASQ44_RS05825 PF00849 RNA pseudouridylate synthase ASQ44_RS05830 PF02628 Cytochrome oxidase assembly protein ASQ44_RS05835 PF10150 Ribonuclease E/G family ASQ44_RS05835 PF00575 S1 RNA binding domain ASQ44_RS05845 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ASQ44_RS05855 PF00034 Cytochrome c ASQ44_RS05860 PF01957 NfeD-like C-terminal, partner-binding ASQ44_RS05865 PF02491 SHS2 domain inserted in FTSA ASQ44_RS05870 PF03799 Cell division protein FtsQ ASQ44_RS05870 PF08478 POTRA domain, FtsQ-type ASQ44_RS05875 PF01820 D-ala D-ala ligase N-terminus ASQ44_RS05875 PF07478 D-ala D-ala ligase C-terminus ASQ44_RS05880 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ASQ44_RS05880 PF01565 FAD binding domain ASQ44_RS05885 PF08245 Mur ligase middle domain ASQ44_RS05885 PF02875 Mur ligase family, glutamate ligase domain ASQ44_RS05885 PF01225 Mur ligase family, catalytic domain ASQ44_RS05890 PF00563 EAL domain ASQ44_RS05925 PF01066 CDP-alcohol phosphatidyltransferase ASQ44_RS05930 PF02666 Phosphatidylserine decarboxylase ASQ44_RS05935 PF11020 Domain of unknown function (DUF2610) ASQ44_RS05940 PF00459 Inositol monophosphatase family ASQ44_RS05945 PF08207 Elongation factor P (EF-P) KOW-like domain ASQ44_RS05945 PF01132 Elongation factor P (EF-P) OB domain ASQ44_RS05945 PF09285 Elongation factor P, C-terminal ASQ44_RS05950 PF00072 Response regulator receiver domain ASQ44_RS05950 PF00990 Diguanylate cyclase, GGDEF domain ASQ44_RS05955 PF00293 NUDIX domain ASQ44_RS05970 PF01329 Pterin 4 alpha carbinolamine dehydratase ASQ44_RS05990 PF00380 Ribosomal protein S9/S16 ASQ44_RS05995 PF00572 Ribosomal protein L13 ASQ44_RS06000 PF13360 PQQ-like domain ASQ44_RS06005 PF10858 Protein of unknown function (DUF2659) ASQ44_RS06015 PF13188 PAS domain ASQ44_RS06015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ASQ44_RS06015 PF00512 His Kinase A (phospho-acceptor) domain ASQ44_RS06015 PF00989 PAS fold ASQ44_RS06020 PF13180 PDZ domain ASQ44_RS06020 PF03572 Peptidase family S41 ASQ44_RS06025 PF00204 DNA gyrase B ASQ44_RS06025 PF00986 DNA gyrase B subunit, carboxyl terminus ASQ44_RS06025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ASQ44_RS06025 PF01751 Toprim domain ASQ44_RS06035 PF10691 Protein of unknown function (DUF2497) ASQ44_RS06040 PF02321 Outer membrane efflux protein ASQ44_RS06055 PF10859 Protein of unknown function (DUF2660) ASQ44_RS06070 PF00005 ABC transporter ASQ44_RS06070 PF00664 ABC transporter transmembrane region ASQ44_RS06075 PF00664 ABC transporter transmembrane region ASQ44_RS06075 PF00005 ABC transporter ASQ44_RS06100 PF03129 Anticodon binding domain ASQ44_RS06100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ASQ44_RS06100 PF02824 TGS domain ASQ44_RS06100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ASQ44_RS06110 PF01259 SAICAR synthetase ASQ44_RS06115 PF00675 Insulinase (Peptidase family M16) ASQ44_RS06115 PF05193 Peptidase M16 inactive domain ASQ44_RS06120 PF00535 Glycosyl transferase family 2 ASQ44_RS06130 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system ASQ44_RS06135 PF02322 Cytochrome bd terminal oxidase subunit II ASQ44_RS06140 PF01654 Cytochrome bd terminal oxidase subunit I ASQ44_RS06145 PF10877 Protein of unknown function (DUF2671) ASQ44_RS06150 PF00664 ABC transporter transmembrane region ASQ44_RS06150 PF00005 ABC transporter ASQ44_RS06170 PF02547 Queuosine biosynthesis protein ASQ44_RS06200 PF00551 Formyl transferase ASQ44_RS06200 PF02911 Formyl transferase, C-terminal domain ASQ44_RS06205 PF01327 Polypeptide deformylase ASQ44_RS06245 PF00521 DNA gyrase/topoisomerase IV, subunit A ASQ44_RS06245 PF03989 DNA gyrase C-terminal domain, beta-propeller ASQ44_RS06260 PF00462 Glutaredoxin ASQ44_RS06265 PF17757 UvrB interaction domain ASQ44_RS06265 PF02151 UvrB/uvrC motif ASQ44_RS06265 PF12344 Ultra-violet resistance protein B ASQ44_RS06265 PF04851 Type III restriction enzyme, res subunit ASQ44_RS06265 PF00271 Helicase conserved C-terminal domain ASQ44_RS06270 PF01351 Ribonuclease HII ASQ44_RS06275 PF07743 HSCB C-terminal oligomerisation domain ASQ44_RS06275 PF00226 DnaJ domain ASQ44_RS06280 PF00012 Hsp70 protein ASQ44_RS06285 PF00111 2Fe-2S iron-sulfur cluster binding domain ASQ44_RS06300 PF00582 Universal stress protein family ASQ44_RS06305 PF03797 Autotransporter beta-domain ASQ44_RS06370 PF00132 Bacterial transferase hexapeptide (six repeats) ASQ44_RS06370 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ASQ44_RS06370 PF14602 Hexapeptide repeat of succinyl-transferase ASQ44_RS06375 PF13717 zinc-ribbon domain ASQ44_RS06380 PF04956 TrbC/VIRB2 family ASQ44_RS06385 PF00510 Cytochrome c oxidase subunit III ASQ44_RS06420 PF00012 Hsp70 protein ASQ44_RS06425 PF00684 DnaJ central domain ASQ44_RS06425 PF00226 DnaJ domain ASQ44_RS06425 PF01556 DnaJ C terminal domain ASQ44_RS06435 PF13525 Outer membrane lipoprotein ASQ44_RS06440 PF02463 RecF/RecN/SMC N terminal domain ASQ44_RS06450 PF00676 Dehydrogenase E1 component ASQ44_RS06450 PF16078 2-oxoglutarate dehydrogenase N-terminus ASQ44_RS06450 PF16870 2-oxoglutarate dehydrogenase C-terminal ASQ44_RS06450 PF02779 Transketolase, pyrimidine binding domain ASQ44_RS06455 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ASQ44_RS06455 PF02817 e3 binding domain ASQ44_RS06455 PF00364 Biotin-requiring enzyme ASQ44_RS06460 PF01242 6-pyruvoyl tetrahydropterin synthase ASQ44_RS06470 PF00375 Sodium:dicarboxylate symporter family ASQ44_RS06495 PF04055 Radical SAM superfamily ASQ44_RS06495 PF06969 HemN C-terminal domain ASQ44_RS06510 PF00448 SRP54-type protein, GTPase domain ASQ44_RS06510 PF02881 SRP54-type protein, helical bundle domain ASQ44_RS06510 PF02978 Signal peptide binding domain ASQ44_RS06515 PF09115 DNA polymerase III, delta subunit, C terminal ASQ44_RS06520 PF00216 Bacterial DNA-binding protein ASQ44_RS06525 PF00873 AcrB/AcrD/AcrF family ASQ44_RS06530 PF04070 Domain of unknown function (DUF378) ASQ44_RS06535 PF04452 RNA methyltransferase ASQ44_RS06540 PF07896 Protein of unknown function (DUF1674) ASQ44_RS06545 PF03364 Polyketide cyclase / dehydrase and lipid transport ASQ44_RS06560 PF01728 FtsJ-like methyltransferase ASQ44_RS06565 PF01029 NusB family ASQ44_RS06570 PF02163 Peptidase family M50 ASQ44_RS06570 PF17820 PDZ domain ASQ44_RS06575 PF01103 Surface antigen ASQ44_RS06575 PF07244 Surface antigen variable number repeat ASQ44_RS06595 PF10879 Protein of unknown function (DUF2674) ASQ44_RS06615 PF00696 Amino acid kinase family ASQ44_RS06620 PF01765 Ribosome recycling factor ASQ44_RS06625 PF02686 Glu-tRNAGln amidotransferase C subunit ASQ44_RS06630 PF01425 Amidase ASQ44_RS06635 PF02934 GatB/GatE catalytic domain ASQ44_RS06635 PF02637 GatB domain ASQ44_RS06640 PF00497 Bacterial extracellular solute-binding proteins, family 3 ASQ44_RS06645 PF01613 Flavin reductase like domain ASQ44_RS06650 PF05173 Dihydrodipicolinate reductase, C-terminus ASQ44_RS06650 PF01113 Dihydrodipicolinate reductase, N-terminus ASQ44_RS06655 PF01027 Inhibitor of apoptosis-promoting Bax1 ASQ44_RS06665 PF02938 GAD domain ASQ44_RS06665 PF00152 tRNA synthetases class II (D, K and N) ASQ44_RS06665 PF01336 OB-fold nucleic acid binding domain ASQ44_RS06670 PF11304 Protein of unknown function (DUF3106) ASQ44_RS06680 PF02789 Cytosol aminopeptidase family, N-terminal domain ASQ44_RS06680 PF00883 Cytosol aminopeptidase family, catalytic domain ASQ44_RS06685 PF16870 2-oxoglutarate dehydrogenase C-terminal ASQ44_RS06685 PF00676 Dehydrogenase E1 component ASQ44_RS06685 PF16078 2-oxoglutarate dehydrogenase N-terminus ASQ44_RS06685 PF02779 Transketolase, pyrimidine binding domain ASQ44_RS06690 PF05000 RNA polymerase Rpb1, domain 4 ASQ44_RS06690 PF00623 RNA polymerase Rpb1, domain 2 ASQ44_RS06690 PF04997 RNA polymerase Rpb1, domain 1 ASQ44_RS06690 PF04998 RNA polymerase Rpb1, domain 5 ASQ44_RS06690 PF04983 RNA polymerase Rpb1, domain 3 ASQ44_RS06695 PF04561 RNA polymerase Rpb2, domain 2 ASQ44_RS06695 PF04565 RNA polymerase Rpb2, domain 3 ASQ44_RS06695 PF10385 RNA polymerase beta subunit external 1 domain ASQ44_RS06695 PF00562 RNA polymerase Rpb2, domain 6 ASQ44_RS06695 PF04560 RNA polymerase Rpb2, domain 7 ASQ44_RS06695 PF04563 RNA polymerase beta subunit ASQ44_RS06700 PF16320 Ribosomal protein L7/L12 dimerisation domain ASQ44_RS06700 PF00542 Ribosomal protein L7/L12 C-terminal domain ASQ44_RS06705 PF00466 Ribosomal protein L10 ASQ44_RS06710 PF00687 Ribosomal protein L1p/L10e family ASQ44_RS06715 PF03946 Ribosomal protein L11, N-terminal domain ASQ44_RS06715 PF00298 Ribosomal protein L11, RNA binding domain ASQ44_RS06720 PF02357 Transcription termination factor nusG ASQ44_RS06720 PF00467 KOW motif ASQ44_RS06725 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ASQ44_RS06735 PF03764 Elongation factor G, domain IV ASQ44_RS06735 PF03144 Elongation factor Tu domain 2 ASQ44_RS06735 PF00009 Elongation factor Tu GTP binding domain ASQ44_RS06735 PF00679 Elongation factor G C-terminus ASQ44_RS06735 PF14492 Elongation Factor G, domain II ASQ44_RS06740 PF00177 Ribosomal protein S7p/S5e ASQ44_RS06745 PF00164 Ribosomal protein S12/S23 ASQ44_RS06750 PF00528 Binding-protein-dependent transport system inner membrane component ASQ44_RS06755 PF00890 FAD binding domain ASQ44_RS06755 PF02910 Fumarate reductase flavoprotein C-term ASQ44_RS06760 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ASQ44_RS06765 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ASQ44_RS06770 PF00581 Rhodanese-like domain ASQ44_RS06770 PF17773 UPF0176 acylphosphatase like domain ASQ44_RS06775 PF13180 PDZ domain ASQ44_RS06780 PF01145 SPFH domain / Band 7 family ASQ44_RS06785 PF12221 Bacterial membrane protein N terminal ASQ44_RS06785 PF01145 SPFH domain / Band 7 family ASQ44_RS06790 PF10609 NUBPL iron-transfer P-loop NTPase ASQ44_RS06795 PF06258 Mitochondrial fission ELM1 ASQ44_RS06815 PF02075 Crossover junction endodeoxyribonuclease RuvC ASQ44_RS06820 PF07650 KH domain ASQ44_RS06820 PF01926 50S ribosome-binding GTPase ASQ44_RS06825 PF14622 Ribonuclease-III-like ASQ44_RS06825 PF00035 Double-stranded RNA binding motif ASQ44_RS06830 PF10502 Signal peptidase, peptidase S26 ASQ44_RS06835 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ASQ44_RS06835 PF10531 SLBB domain ASQ44_RS06835 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ASQ44_RS06840 PF07549 SecD/SecF GG Motif ASQ44_RS06840 PF02355 Protein export membrane protein ASQ44_RS06845 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) ASQ44_RS06850 PF01245 Ribosomal protein L19 ASQ44_RS06855 PF01746 tRNA (Guanine-1)-methyltransferase ASQ44_RS06880 PF04610 TrbL/VirB6 plasmid conjugal transfer protein ASQ44_RS06885 PF04610 TrbL/VirB6 plasmid conjugal transfer protein ASQ44_RS06890 PF04610 TrbL/VirB6 plasmid conjugal transfer protein ASQ44_RS06895 PF04610 TrbL/VirB6 plasmid conjugal transfer protein ASQ44_RS06900 PF04610 TrbL/VirB6 plasmid conjugal transfer protein ASQ44_RS06905 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ASQ44_RS06920 PF01926 50S ribosome-binding GTPase ASQ44_RS06930 PF01197 Ribosomal protein L31 ASQ44_RS06935 PF00830 Ribosomal L28 family ASQ44_RS06970 PF17629 Family of unknown function (DUF5510) ASQ44_RS06975 PF00005 ABC transporter ASQ44_RS06980 PF02405 Permease MlaE ASQ44_RS06985 PF01168 Alanine racemase, N-terminal domain ASQ44_RS06985 PF00842 Alanine racemase, C-terminal domain ASQ44_RS06990 PF00133 tRNA synthetases class I (I, L, M and V) ASQ44_RS06990 PF08264 Anticodon-binding domain of tRNA ASQ44_RS06990 PF13603 Leucyl-tRNA synthetase, Domain 2 ASQ44_RS06995 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ASQ44_RS06995 PF14572 Phosphoribosyl synthetase-associated domain ASQ44_RS07005 PF04333 MlaA lipoprotein ASQ44_RS07015 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system ASQ44_RS07020 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system ASQ44_RS07025 PF00155 Aminotransferase class I and II ASQ44_RS07030 PF04028 Domain of unknown function (DUF374) ASQ44_RS07035 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ASQ44_RS07050 PF00889 Elongation factor TS ASQ44_RS07055 PF00318 Ribosomal protein S2 ASQ44_RS07060 PF09190 DALR domain ASQ44_RS07060 PF01406 tRNA synthetases class I (C) catalytic domain ASQ44_RS07065 PF03797 Autotransporter beta-domain ASQ44_RS07075 PF03840 Preprotein translocase SecG subunit ASQ44_RS07095 PF07690 Major Facilitator Superfamily ASQ44_RS07100 PF00892 EamA-like transporter family ASQ44_RS07105 PF03922 OmpW family ASQ44_RS07110 PF02233 NAD(P) transhydrogenase beta subunit ASQ44_RS07120 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ASQ44_RS07120 PF14489 QueF-like protein ASQ44_RS07125 PF00072 Response regulator receiver domain ASQ44_RS07125 PF00486 Transcriptional regulatory protein, C terminal ASQ44_RS07130 PF02556 Preprotein translocase subunit SecB ASQ44_RS07135 PF00692 dUTPase ASQ44_RS07140 PF13609 Gram-negative porin ASQ44_RS07150 PF00521 DNA gyrase/topoisomerase IV, subunit A ASQ44_RS07150 PF03989 DNA gyrase C-terminal domain, beta-propeller ASQ44_RS07155 PF05036 Sporulation related domain ASQ44_RS07160 PF03485 Arginyl tRNA synthetase N terminal domain ASQ44_RS07160 PF00750 tRNA synthetases class I (R) ASQ44_RS07160 PF05746 DALR anticodon binding domain ASQ44_RS07165 PF01966 HD domain ASQ44_RS07165 PF13286 Phosphohydrolase-associated domain ASQ44_RS07170 PF01521 Iron-sulphur cluster biosynthesis ASQ44_RS07200 PF00793 DAHP synthetase I family ASQ44_RS07205 PF10878 Protein of unknown function (DUF2672) ASQ44_RS07210 PF00005 ABC transporter ASQ44_RS07210 PF12848 ABC transporter ASQ44_RS07215 PF02195 ParB-like nuclease domain ASQ44_RS07215 PF17762 HTH domain found in ParB protein ASQ44_RS07220 PF13614 AAA domain ASQ44_RS07225 PF02527 rRNA small subunit methyltransferase G ASQ44_RS07230 PF01134 Glucose inhibited division protein A ASQ44_RS07230 PF13932 GidA associated domain ASQ44_RS07235 PF00334 Nucleoside diphosphate kinase ASQ44_RS07240 PF07690 Major Facilitator Superfamily ASQ44_RS07245 PF03219 TLC ATP/ADP transporter ASQ44_RS07250 PF01327 Polypeptide deformylase ASQ44_RS07280 PF01066 CDP-alcohol phosphatidyltransferase ASQ44_RS07285 PF02096 60Kd inner membrane protein ASQ44_RS07285 PF14849 YidC periplasmic domain ASQ44_RS07290 PF00924 Mechanosensitive ion channel ASQ44_RS07295 PF01790 Prolipoprotein diacylglyceryl transferase ASQ44_RS07300 PF16198 tRNA pseudouridylate synthase B C-terminal domain ASQ44_RS07300 PF01509 TruB family pseudouridylate synthase (N terminal domain) ASQ44_RS07310 PF13085 2Fe-2S iron-sulfur cluster binding domain ASQ44_RS07315 PF17862 AAA+ lid domain ASQ44_RS07315 PF00004 ATPase family associated with various cellular activities (AAA) ASQ44_RS07315 PF01434 Peptidase family M41 ASQ44_RS07315 PF06480 FtsH Extracellular ASQ44_RS07320 PF01171 PP-loop family ASQ44_RS07325 PF03948 Ribosomal protein L9, C-terminal domain ASQ44_RS07325 PF01281 Ribosomal protein L9, N-terminal domain ASQ44_RS07330 PF01084 Ribosomal protein S18 ASQ44_RS07335 PF01250 Ribosomal protein S6 ASQ44_RS07345 PF00814 Glycoprotease family ASQ44_RS07350 PF17462 Family of unknown function (DUF5424) ASQ44_RS07440 PF00004 ATPase family associated with various cellular activities (AAA) ASQ44_RS07440 PF10431 C-terminal, D2-small domain, of ClpB protein ASQ44_RS07440 PF02861 Clp amino terminal domain, pathogenicity island component ASQ44_RS07440 PF17871 AAA lid domain ASQ44_RS07440 PF07724 AAA domain (Cdc48 subfamily) ASQ44_RS07600 PF02861 Clp amino terminal domain, pathogenicity island component ASQ44_RS07600 PF00004 ATPase family associated with various cellular activities (AAA) ASQ44_RS07600 PF17871 AAA lid domain ASQ44_RS07600 PF10431 C-terminal, D2-small domain, of ClpB protein ASQ44_RS07600 PF07724 AAA domain (Cdc48 subfamily) ASQ44_RS07605 PF00004 ATPase family associated with various cellular activities (AAA) ASQ44_RS07605 PF07724 AAA domain (Cdc48 subfamily) ASQ44_RS07605 PF17871 AAA lid domain ASQ44_RS07605 PF02861 Clp amino terminal domain, pathogenicity island component ASQ44_RS07605 PF10431 C-terminal, D2-small domain, of ClpB protein