RD1_RS00030 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS00035 SM00342 helix_turn_helix, arabinose operon control protein RD1_RS00065 SM00382 ATPases associated with a variety of cellular activities RD1_RS00100 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS00130 SM00992 Hemimethylated DNA-binding protein YccV like RD1_RS00150 SM00382 ATPases associated with a variety of cellular activities RD1_RS00150 SM00843 RD1_RS00150 RD1_RS00175 SM00464 Found in ATP-dependent protease La (LON) RD1_RS00190 SM00448 cheY-homologous receiver domain RD1_RS00190 SM00862 Transcriptional regulatory protein, C terminal RD1_RS00365 SM00849 Metallo-beta-lactamase superfamily RD1_RS00380 SM00387 Histidine kinase-like ATPases RD1_RS00390 SM00448 cheY-homologous receiver domain RD1_RS00455 SM00861 Transketolase, pyrimidine binding domain RD1_RS00555 SM00382 ATPases associated with a variety of cellular activities RD1_RS00560 SM00327 von Willebrand factor (vWF) type A domain RD1_RS00655 SM00091 PAS domain RD1_RS00785 SM00382 ATPases associated with a variety of cellular activities RD1_RS00795 SM00895 RD1_RS00795 RD1_RS00805 SM00382 ATPases associated with a variety of cellular activities RD1_RS00840 SM00316 Ribosomal protein S1-like RNA-binding domain RD1_RS00840 SM00955 RD1_RS00840 RD1_RS00910 SM00829 Enoylreductase RD1_RS00920 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS00940 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RD1_RS00940 SM01232 RD1_RS00940 RD1_RS00960 SM00382 ATPases associated with a variety of cellular activities RD1_RS00960 SM00760 Bacterial dnaA protein helix-turn-helix domain RD1_RS00965 SM00480 DNA polymerase III beta subunit RD1_RS00970 SM00382 ATPases associated with a variety of cellular activities RD1_RS00980 SM00387 Histidine kinase-like ATPases RD1_RS00980 SM00433 TopoisomeraseII RD1_RS00995 SM00729 Elongator protein 3, MiaB family, Radical SAM RD1_RS01000 SM00986 Uracil DNA glycosylase superfamily RD1_RS01000 SM00987 UreE urease accessory protein, C-terminal domain RD1_RS01045 SM00100 Cyclic nucleotide-monophosphate binding domain RD1_RS01060 SM01329 RD1_RS01060 RD1_RS01075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RD1_RS01085 SM00354 helix_turn _helix lactose operon repressor RD1_RS01130 SM00796 Allophanate hydrolase subunit 1 RD1_RS01135 SM00797 Allophanate hydrolase subunit 2 RD1_RS01150 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD1_RS01155 SM00342 helix_turn_helix, arabinose operon control protein RD1_RS01160 SM00342 helix_turn_helix, arabinose operon control protein RD1_RS01170 SM00382 ATPases associated with a variety of cellular activities RD1_RS01205 SM00858 RD1_RS01205 RD1_RS01285 SM00382 ATPases associated with a variety of cellular activities RD1_RS01340 SM00822 RD1_RS01340 RD1_RS01385 SM00478 endonuclease III RD1_RS01425 SM00859 Semialdehyde dehydrogenase, NAD binding domain RD1_RS01455 SM00947 Carbonic anhydrase RD1_RS01555 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RD1_RS01555 SM00245 tail specific protease RD1_RS01570 SM00481 DNA polymerase alpha chain like domain RD1_RS01635 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RD1_RS01635 SM00474 3'-5' exonuclease RD1_RS01635 SM00475 5'-3' exonuclease RD1_RS01635 SM00479 RD1_RS01635 RD1_RS01635 SM00482 DNA polymerase A domain RD1_RS01670 SM00387 Histidine kinase-like ATPases RD1_RS01670 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS01670 SM00448 cheY-homologous receiver domain RD1_RS01680 SM00341 Helicase and RNase D C-terminal RD1_RS01680 SM00487 DEAD-like helicases superfamily RD1_RS01680 SM00490 helicase superfamily c-terminal domain RD1_RS01680 SM00956 RD1_RS01680 RD1_RS01715 SM00474 3'-5' exonuclease RD1_RS01720 SM00116 Domain in cystathionine beta-synthase and other proteins. RD1_RS01735 SM00382 ATPases associated with a variety of cellular activities RD1_RS01775 SM00271 DnaJ molecular chaperone homology domain RD1_RS01780 SM00957 SecA DEAD-like domain RD1_RS01780 SM00958 SecA preprotein cross-linking domain RD1_RS01810 SM00316 Ribosomal protein S1-like RNA-binding domain RD1_RS01810 SM00322 K homology RNA-binding domain RD1_RS01835 SM00347 helix_turn_helix multiple antibiotic resistance protein RD1_RS01895 SM00382 ATPases associated with a variety of cellular activities RD1_RS01900 SM00382 ATPases associated with a variety of cellular activities RD1_RS01925 SM00331 Sigma factor PP2C-like phosphatases RD1_RS01925 SM00448 cheY-homologous receiver domain RD1_RS01935 SM00822 RD1_RS01935 RD1_RS01965 SM00919 Malic enzyme, NAD binding domain RD1_RS01965 SM01274 RD1_RS01965 RD1_RS01970 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RD1_RS01970 SM00534 ATPase domain of DNA mismatch repair MUTS family RD1_RS01995 SM00729 Elongator protein 3, MiaB family, Radical SAM RD1_RS02000 SM00470 ParB-like nuclease domain RD1_RS02015 SM01228 RD1_RS02015 RD1_RS02025 SM00357 Cold shock protein domain RD1_RS02025 SM00382 ATPases associated with a variety of cellular activities RD1_RS02025 SM00959 Rho termination factor, N-terminal domain RD1_RS02050 SM00479 RD1_RS02050 RD1_RS02065 SM00978 RD1_RS02065 RD1_RS02070 SM00463 Small MutS-related domain RD1_RS02080 SM00382 ATPases associated with a variety of cellular activities RD1_RS02080 SM01086 C-terminal, D2-small domain, of ClpB protein RD1_RS02125 SM00091 PAS domain RD1_RS02140 SM00448 cheY-homologous receiver domain RD1_RS02145 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RD1_RS02155 SM00996 S-adenosyl-L-homocysteine hydrolase RD1_RS02155 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RD1_RS02230 SM00953 RD1_RS02230 RD1_RS02250 SM00382 ATPases associated with a variety of cellular activities RD1_RS02265 SM00354 helix_turn _helix lactose operon repressor RD1_RS02295 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. RD1_RS02320 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain RD1_RS02320 SM01080 RD1_RS02320 RD1_RS02335 SM00822 RD1_RS02335 RD1_RS02355 SM00886 Stress responsive A/B Barrel Domain RD1_RS02365 SM00882 Coenzyme A transferase RD1_RS02385 SM00829 Enoylreductase RD1_RS02395 SM00382 ATPases associated with a variety of cellular activities RD1_RS02430 SM00327 von Willebrand factor (vWF) type A domain RD1_RS02465 SM00849 Metallo-beta-lactamase superfamily RD1_RS02470 SM00450 Rhodanese Homology Domain RD1_RS02515 SM00382 ATPases associated with a variety of cellular activities RD1_RS02520 SM00382 ATPases associated with a variety of cellular activities RD1_RS02540 SM00861 Transketolase, pyrimidine binding domain RD1_RS02555 SM00448 cheY-homologous receiver domain RD1_RS02555 SM00862 Transcriptional regulatory protein, C terminal RD1_RS02560 SM00347 helix_turn_helix multiple antibiotic resistance protein RD1_RS02595 SM00382 ATPases associated with a variety of cellular activities RD1_RS02700 SM00450 Rhodanese Homology Domain RD1_RS02725 SM00382 ATPases associated with a variety of cellular activities RD1_RS02730 SM00382 ATPases associated with a variety of cellular activities RD1_RS02770 SM00411 bacterial (prokaryotic) histone like domain RD1_RS02795 SM01007 Class II Aldolase and Adducin N-terminal domain RD1_RS02810 SM00881 CoA binding domain RD1_RS02885 SM00020 Trypsin-like serine protease RD1_RS02930 SM00316 Ribosomal protein S1-like RNA-binding domain RD1_RS02930 SM00322 K homology RNA-binding domain RD1_RS02950 SM01387 RD1_RS02950 RD1_RS03015 SM00798 AICARFT/IMPCHase bienzyme RD1_RS03015 SM00851 MGS-like domain RD1_RS03045 SM01133 RD1_RS03045 RD1_RS03050 SM00853 MutL C terminal dimerisation domain RD1_RS03050 SM01340 RD1_RS03050 RD1_RS03105 SM00858 RD1_RS03105 RD1_RS03125 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RD1_RS03135 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS03135 SM00895 RD1_RS03135 RD1_RS03170 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RD1_RS03205 SM00822 RD1_RS03205 RD1_RS03210 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RD1_RS03210 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RD1_RS03220 SM00855 Phosphoglycerate mutase family RD1_RS03230 SM00382 ATPases associated with a variety of cellular activities RD1_RS03255 SM00382 ATPases associated with a variety of cellular activities RD1_RS03300 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RD1_RS03305 SM00382 ATPases associated with a variety of cellular activities RD1_RS03305 SM01086 C-terminal, D2-small domain, of ClpB protein RD1_RS03310 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. RD1_RS03400 SM00895 RD1_RS03400 RD1_RS03405 SM01130 RD1_RS03405 RD1_RS03455 SM00382 ATPases associated with a variety of cellular activities RD1_RS03540 SM00382 ATPases associated with a variety of cellular activities RD1_RS03550 SM00883 Chaperonin 10 Kd subunit RD1_RS03555 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RD1_RS03595 SM00849 Metallo-beta-lactamase superfamily RD1_RS03615 SM00419 helix_turn_helix, cAMP Regulatory protein RD1_RS03705 SM00487 DEAD-like helicases superfamily RD1_RS03705 SM00490 helicase superfamily c-terminal domain RD1_RS03745 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS03760 SM00729 Elongator protein 3, MiaB family, Radical SAM RD1_RS03845 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS03855 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS03925 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS03925 SM00895 RD1_RS03925 RD1_RS03945 SM00382 ATPases associated with a variety of cellular activities RD1_RS03950 SM00382 ATPases associated with a variety of cellular activities RD1_RS03970 SM00382 ATPases associated with a variety of cellular activities RD1_RS04000 SM00382 ATPases associated with a variety of cellular activities RD1_RS04015 SM00327 von Willebrand factor (vWF) type A domain RD1_RS04035 SM00421 helix_turn_helix, Lux Regulon RD1_RS04035 SM00448 cheY-homologous receiver domain RD1_RS04040 SM00897 FIST N domain RD1_RS04040 SM01204 RD1_RS04040 RD1_RS04045 SM00387 Histidine kinase-like ATPases RD1_RS04045 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS04045 SM00448 cheY-homologous receiver domain RD1_RS04065 SM00849 Metallo-beta-lactamase superfamily RD1_RS04090 SM00564 beta-propeller repeat RD1_RS04100 SM00062 Bacterial periplasmic substrate-binding proteins RD1_RS04160 SM00382 ATPases associated with a variety of cellular activities RD1_RS04225 SM00422 helix_turn_helix, mercury resistance RD1_RS04240 SM00382 ATPases associated with a variety of cellular activities RD1_RS04255 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS04255 SM00895 RD1_RS04255 RD1_RS04295 SM00450 Rhodanese Homology Domain RD1_RS04310 SM00938 Nitrogen regulatory protein P-II RD1_RS04385 SM00852 Probable molybdopterin binding domain RD1_RS04445 SM00478 endonuclease III RD1_RS04445 SM00525 RD1_RS04445 RD1_RS04450 SM00342 helix_turn_helix, arabinose operon control protein RD1_RS04480 SM01130 RD1_RS04480 RD1_RS04495 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RD1_RS04510 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS04535 SM00382 ATPases associated with a variety of cellular activities RD1_RS04550 SM00487 DEAD-like helicases superfamily RD1_RS04550 SM00490 helicase superfamily c-terminal domain RD1_RS04560 SM00320 WD40 repeats RD1_RS04565 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RD1_RS04590 SM00895 RD1_RS04590 RD1_RS04605 SM00344 helix_turn_helix ASNC type RD1_RS04620 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RD1_RS04675 SM00873 B3/4 domain RD1_RS04675 SM00874 tRNA synthetase B5 domain RD1_RS04675 SM00896 Ferredoxin-fold anticodon binding domain RD1_RS04725 SM00382 ATPases associated with a variety of cellular activities RD1_RS04765 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RD1_RS04765 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RD1_RS04770 SM00344 helix_turn_helix ASNC type RD1_RS04790 SM00829 Enoylreductase RD1_RS04795 SM00829 Enoylreductase RD1_RS04815 SM00493 RD1_RS04815 RD1_RS04825 SM00382 ATPases associated with a variety of cellular activities RD1_RS04830 SM00829 Enoylreductase RD1_RS04850 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS04850 SM00895 RD1_RS04850 RD1_RS04865 SM00382 ATPases associated with a variety of cellular activities RD1_RS04885 SM00382 ATPases associated with a variety of cellular activities RD1_RS04925 SM00226 Low molecular weight phosphatase family RD1_RS04975 SM00838 Elongation factor G C-terminus RD1_RS05015 SM00855 Phosphoglycerate mutase family RD1_RS05060 SM00382 ATPases associated with a variety of cellular activities RD1_RS05085 SM00829 Enoylreductase RD1_RS05100 SM00479 RD1_RS05100 RD1_RS05110 SM00100 Cyclic nucleotide-monophosphate binding domain RD1_RS05110 SM00116 Domain in cystathionine beta-synthase and other proteins. RD1_RS05165 SM00382 ATPases associated with a variety of cellular activities RD1_RS05190 SM00971 Serine acetyltransferase, N-terminal RD1_RS05235 SM00382 ATPases associated with a variety of cellular activities RD1_RS05285 SM00729 Elongator protein 3, MiaB family, Radical SAM RD1_RS05310 SM00448 cheY-homologous receiver domain RD1_RS05310 SM00862 Transcriptional regulatory protein, C terminal RD1_RS05315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RD1_RS05315 SM00387 Histidine kinase-like ATPases RD1_RS05315 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS05330 SM00382 ATPases associated with a variety of cellular activities RD1_RS05350 SM00881 CoA binding domain RD1_RS05375 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RD1_RS05375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RD1_RS05375 SM01358 RD1_RS05375 RD1_RS05430 SM00448 cheY-homologous receiver domain RD1_RS05475 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RD1_RS05500 SM00382 ATPases associated with a variety of cellular activities RD1_RS05510 SM00855 Phosphoglycerate mutase family RD1_RS05580 SM00062 Bacterial periplasmic substrate-binding proteins RD1_RS05585 SM00917 LeuA allosteric (dimerisation) domain RD1_RS05600 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. RD1_RS05615 SM00849 Metallo-beta-lactamase superfamily RD1_RS05655 SM00382 ATPases associated with a variety of cellular activities RD1_RS05665 SM00357 Cold shock protein domain RD1_RS05680 SM00357 Cold shock protein domain RD1_RS05705 SM00382 ATPases associated with a variety of cellular activities RD1_RS05785 SM00487 DEAD-like helicases superfamily RD1_RS05785 SM00490 helicase superfamily c-terminal domain RD1_RS05840 SM00382 ATPases associated with a variety of cellular activities RD1_RS05845 SM00729 Elongator protein 3, MiaB family, Radical SAM RD1_RS05850 SM00100 Cyclic nucleotide-monophosphate binding domain RD1_RS05850 SM00419 helix_turn_helix, cAMP Regulatory protein RD1_RS06020 SM00235 Zinc-dependent metalloprotease RD1_RS06055 SM00830 Chorismate mutase type II RD1_RS06070 SM00382 ATPases associated with a variety of cellular activities RD1_RS06070 SM00962 SRP54-type protein, GTPase domain RD1_RS06070 SM00963 SRP54-type protein, helical bundle domain RD1_RS06090 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RD1_RS06120 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS06120 SM00895 RD1_RS06120 RD1_RS06275 SM01409 RD1_RS06275 RD1_RS06280 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RD1_RS06280 SM00954 Region found in RelA / SpoT proteins RD1_RS06310 SM00358 Double-stranded RNA binding motif RD1_RS06310 SM00535 Ribonuclease III family RD1_RS06345 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS06365 SM00448 cheY-homologous receiver domain RD1_RS06365 SM00862 Transcriptional regulatory protein, C terminal RD1_RS06370 SM00387 Histidine kinase-like ATPases RD1_RS06370 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS06395 SM00563 Phosphate acyltransferases RD1_RS06410 SM00893 Electron transfer flavoprotein domain RD1_RS06415 SM00893 Electron transfer flavoprotein domain RD1_RS06435 SM00287 Bacterial SH3 domain homologues RD1_RS06440 SM00434 DNA Topoisomerase IV RD1_RS06470 SM01403 RD1_RS06470 RD1_RS06490 SM00357 Cold shock protein domain RD1_RS06505 SM01382 RD1_RS06505 RD1_RS06505 SM01383 RD1_RS06505 RD1_RS06520 SM00322 K homology RNA-binding domain RD1_RS06570 SM01374 RD1_RS06570 RD1_RS06575 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RD1_RS06655 SM00662 RNA polymerases D RD1_RS06665 SM00382 ATPases associated with a variety of cellular activities RD1_RS06675 SM00363 S4 RNA-binding domain RD1_RS06690 SM00062 Bacterial periplasmic substrate-binding proteins RD1_RS06705 SM00382 ATPases associated with a variety of cellular activities RD1_RS06710 SM00855 Phosphoglycerate mutase family RD1_RS06745 SM00052 Putative diguanylate phosphodiesterase RD1_RS06745 SM00267 diguanylate cyclase RD1_RS06755 SM01234 RD1_RS06755 RD1_RS06780 SM00387 Histidine kinase-like ATPases RD1_RS06780 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS06845 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS06845 SM00895 RD1_RS06845 RD1_RS06860 SM00382 ATPases associated with a variety of cellular activities RD1_RS06880 SM00354 helix_turn _helix lactose operon repressor RD1_RS06885 SM00387 Histidine kinase-like ATPases RD1_RS06900 SM00448 cheY-homologous receiver domain RD1_RS06905 SM00984 UDP binding domain RD1_RS06925 SM01230 RD1_RS06925 RD1_RS06945 SM00382 ATPases associated with a variety of cellular activities RD1_RS06955 SM00382 ATPases associated with a variety of cellular activities RD1_RS06975 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RD1_RS07050 SM00849 Metallo-beta-lactamase superfamily RD1_RS07055 SM00849 Metallo-beta-lactamase superfamily RD1_RS07075 SM00072 Guanylate kinase homologues. RD1_RS07075 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain RD1_RS07085 SM00347 helix_turn_helix multiple antibiotic resistance protein RD1_RS07090 SM01092 CO dehydrogenase flavoprotein C-terminal domain RD1_RS07095 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD1_RS07140 SM00900 RD1_RS07140 RD1_RS07150 SM00710 Parallel beta-helix repeats RD1_RS07150 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses RD1_RS07155 SM00382 ATPases associated with a variety of cellular activities RD1_RS07175 SM00100 Cyclic nucleotide-monophosphate binding domain RD1_RS07175 SM00419 helix_turn_helix, cAMP Regulatory protein RD1_RS07180 SM00100 Cyclic nucleotide-monophosphate binding domain RD1_RS07200 SM00327 von Willebrand factor (vWF) type A domain RD1_RS07225 SM00900 RD1_RS07225 RD1_RS07255 SM00344 helix_turn_helix ASNC type RD1_RS07265 SM00729 Elongator protein 3, MiaB family, Radical SAM RD1_RS07375 SM00382 ATPases associated with a variety of cellular activities RD1_RS07385 SM00563 Phosphate acyltransferases RD1_RS07425 SM00861 Transketolase, pyrimidine binding domain RD1_RS07435 SM00881 CoA binding domain RD1_RS07565 SM00563 Phosphate acyltransferases RD1_RS07570 SM00829 Enoylreductase RD1_RS07575 SM00421 helix_turn_helix, Lux Regulon RD1_RS07610 SM00382 ATPases associated with a variety of cellular activities RD1_RS07630 SM00932 Scaffold protein Nfu/NifU N terminal RD1_RS07640 SM01034 Sensors of blue-light using FAD RD1_RS07665 SM00704 CDGSH-type zinc finger. Function unknown. RD1_RS07670 SM00729 Elongator protein 3, MiaB family, Radical SAM RD1_RS07690 SM00986 Uracil DNA glycosylase superfamily RD1_RS07690 SM00987 UreE urease accessory protein, C-terminal domain RD1_RS07705 SM00450 Rhodanese Homology Domain RD1_RS07755 SM00487 DEAD-like helicases superfamily RD1_RS07755 SM00490 helicase superfamily c-terminal domain RD1_RS07755 SM00847 Helicase associated domain (HA2) Add an annotation RD1_RS07790 SM00316 Ribosomal protein S1-like RNA-binding domain RD1_RS07835 SM00729 Elongator protein 3, MiaB family, Radical SAM RD1_RS07840 SM00729 Elongator protein 3, MiaB family, Radical SAM RD1_RS07855 SM00342 helix_turn_helix, arabinose operon control protein RD1_RS07890 SM00052 Putative diguanylate phosphodiesterase RD1_RS07890 SM00267 diguanylate cyclase RD1_RS07925 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS07925 SM00866 RD1_RS07925 RD1_RS07930 SM00382 ATPases associated with a variety of cellular activities RD1_RS07960 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS07960 SM00866 RD1_RS07960 RD1_RS07990 SM00382 ATPases associated with a variety of cellular activities RD1_RS08010 SM00382 ATPases associated with a variety of cellular activities RD1_RS08050 SM00841 Elongation factor P, C-terminal RD1_RS08050 SM01185 RD1_RS08050 RD1_RS08065 SM00382 ATPases associated with a variety of cellular activities RD1_RS08105 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD1_RS08140 SM00732 Likely ribonuclease with RNase H fold. RD1_RS08180 SM00257 Lysin motif RD1_RS08185 SM00382 ATPases associated with a variety of cellular activities RD1_RS08215 SM00564 beta-propeller repeat RD1_RS08240 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD1_RS08270 SM00400 zinc finger RD1_RS08270 SM00493 RD1_RS08270 RD1_RS08355 SM00342 helix_turn_helix, arabinose operon control protein RD1_RS08365 SM00363 S4 RNA-binding domain RD1_RS08405 SM00028 Tetratricopeptide repeats RD1_RS08410 SM00490 helicase superfamily c-terminal domain RD1_RS08415 SM00363 S4 RNA-binding domain RD1_RS08425 SM01058 CarD-like/TRCF domain RD1_RS08445 SM00344 helix_turn_helix ASNC type RD1_RS08490 SM00382 ATPases associated with a variety of cellular activities RD1_RS08525 SM00857 Resolvase, N terminal domain RD1_RS08580 SM00833 Cobalamin synthesis protein cobW C-terminal domain RD1_RS08600 SM00382 ATPases associated with a variety of cellular activities RD1_RS08605 SM00382 ATPases associated with a variety of cellular activities RD1_RS08645 SM00347 helix_turn_helix multiple antibiotic resistance protein RD1_RS08675 SM00357 Cold shock protein domain RD1_RS08705 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RD1_RS08750 SM01230 RD1_RS08750 RD1_RS08760 SM01230 RD1_RS08760 RD1_RS08775 SM00062 Bacterial periplasmic substrate-binding proteins RD1_RS08775 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RD1_RS08780 SM00382 ATPases associated with a variety of cellular activities RD1_RS08845 SM00788 Adenylosuccinate synthetase RD1_RS08860 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain RD1_RS08885 SM00244 prohibitin homologues RD1_RS08890 SM00244 prohibitin homologues RD1_RS08900 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RD1_RS08920 SM01209 RD1_RS08920 RD1_RS08920 SM01210 RD1_RS08920 RD1_RS08935 SM00382 ATPases associated with a variety of cellular activities RD1_RS08935 SM00962 SRP54-type protein, GTPase domain RD1_RS08935 SM00963 SRP54-type protein, helical bundle domain RD1_RS09000 SM00836 DALR anticodon binding domain RD1_RS09015 SM00905 Dihydroneopterin aldolase RD1_RS09040 SM00344 helix_turn_helix ASNC type RD1_RS09045 SM00344 helix_turn_helix ASNC type RD1_RS09070 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS09070 SM00895 RD1_RS09070 RD1_RS09080 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RD1_RS09110 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RD1_RS09130 SM00382 ATPases associated with a variety of cellular activities RD1_RS09145 SM00382 ATPases associated with a variety of cellular activities RD1_RS09165 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RD1_RS09210 SM00363 S4 RNA-binding domain RD1_RS09220 SM00849 Metallo-beta-lactamase superfamily RD1_RS09240 SM00644 RD1_RS09240 RD1_RS09275 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS09295 SM00116 Domain in cystathionine beta-synthase and other proteins. RD1_RS09295 SM00924 MgtE intracellular N domain RD1_RS09375 SM00318 Staphylococcal nuclease homologues RD1_RS09380 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS09410 SM00878 Biotin carboxylase C-terminal domain RD1_RS09440 SM00271 DnaJ molecular chaperone homology domain RD1_RS09485 SM00382 ATPases associated with a variety of cellular activities RD1_RS09525 SM00387 Histidine kinase-like ATPases RD1_RS09525 SM00433 TopoisomeraseII RD1_RS09635 SM00487 DEAD-like helicases superfamily RD1_RS09635 SM00490 helicase superfamily c-terminal domain RD1_RS09675 SM00382 ATPases associated with a variety of cellular activities RD1_RS09725 SM00382 ATPases associated with a variety of cellular activities RD1_RS09755 SM00487 DEAD-like helicases superfamily RD1_RS09755 SM00490 helicase superfamily c-terminal domain RD1_RS09770 SM00028 Tetratricopeptide repeats RD1_RS09775 SM00028 Tetratricopeptide repeats RD1_RS09810 SM00858 RD1_RS09810 RD1_RS09830 SM00882 Coenzyme A transferase RD1_RS09835 SM00387 Histidine kinase-like ATPases RD1_RS09840 SM00882 Coenzyme A transferase RD1_RS09845 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RD1_RS09845 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RD1_RS09845 SM00493 RD1_RS09845 RD1_RS09940 SM00903 Flavin reductase like domain RD1_RS09970 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RD1_RS09985 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RD1_RS09985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RD1_RS09990 SM00382 ATPases associated with a variety of cellular activities RD1_RS09995 SM00382 ATPases associated with a variety of cellular activities RD1_RS10030 SM01230 RD1_RS10030 RD1_RS10075 SM00062 Bacterial periplasmic substrate-binding proteins RD1_RS10085 SM00382 ATPases associated with a variety of cellular activities RD1_RS10175 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS10210 SM00382 ATPases associated with a variety of cellular activities RD1_RS10240 SM00052 Putative diguanylate phosphodiesterase RD1_RS10240 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RD1_RS10240 SM00267 diguanylate cyclase RD1_RS10250 SM00382 ATPases associated with a variety of cellular activities RD1_RS10255 SM00382 ATPases associated with a variety of cellular activities RD1_RS10315 SM00487 DEAD-like helicases superfamily RD1_RS10330 SM00382 ATPases associated with a variety of cellular activities RD1_RS10350 SM00448 cheY-homologous receiver domain RD1_RS10380 SM00849 Metallo-beta-lactamase superfamily RD1_RS10385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RD1_RS10385 SM00387 Histidine kinase-like ATPases RD1_RS10385 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS10405 SM00341 Helicase and RNase D C-terminal RD1_RS10405 SM00474 3'-5' exonuclease RD1_RS10425 SM01018 B12 binding domain RD1_RS10450 SM01211 RD1_RS10450 RD1_RS10455 SM00387 Histidine kinase-like ATPases RD1_RS10455 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS10460 SM00382 ATPases associated with a variety of cellular activities RD1_RS10460 SM00448 cheY-homologous receiver domain RD1_RS10530 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS10530 SM00895 RD1_RS10530 RD1_RS10555 SM00829 Enoylreductase RD1_RS10620 SM00422 helix_turn_helix, mercury resistance RD1_RS10640 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS10640 SM00866 RD1_RS10640 RD1_RS10655 SM00903 Flavin reductase like domain RD1_RS10675 SM00671 Sel1-like repeats. RD1_RS10690 SM00354 helix_turn _helix lactose operon repressor RD1_RS10710 SM00642 Alpha-amylase domain RD1_RS10715 SM00382 ATPases associated with a variety of cellular activities RD1_RS10735 SM00903 Flavin reductase like domain RD1_RS10795 SM00382 ATPases associated with a variety of cellular activities RD1_RS10820 SM00867 YceI-like domain RD1_RS10825 SM00710 Parallel beta-helix repeats RD1_RS10855 SM00100 Cyclic nucleotide-monophosphate binding domain RD1_RS10860 SM00347 helix_turn_helix multiple antibiotic resistance protein RD1_RS10880 SM00382 ATPases associated with a variety of cellular activities RD1_RS10930 SM00346 helix_turn_helix isocitrate lyase regulation RD1_RS10945 SM00382 ATPases associated with a variety of cellular activities RD1_RS10975 SM00072 Guanylate kinase homologues. RD1_RS10980 SM00382 ATPases associated with a variety of cellular activities RD1_RS10985 SM00382 ATPases associated with a variety of cellular activities RD1_RS11010 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS11010 SM00866 RD1_RS11010 RD1_RS11015 SM00226 Low molecular weight phosphatase family RD1_RS11015 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RD1_RS11020 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RD1_RS11045 SM00382 ATPases associated with a variety of cellular activities RD1_RS11075 SM00382 ATPases associated with a variety of cellular activities RD1_RS11085 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS11085 SM00895 RD1_RS11085 RD1_RS11100 SM00382 ATPases associated with a variety of cellular activities RD1_RS11110 SM00420 helix_turn_helix, Deoxyribose operon repressor RD1_RS11110 SM01134 RD1_RS11110 RD1_RS11150 SM00382 ATPases associated with a variety of cellular activities RD1_RS11180 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS11200 SM00419 helix_turn_helix, cAMP Regulatory protein RD1_RS11220 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RD1_RS11255 SM00852 Probable molybdopterin binding domain RD1_RS11270 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RD1_RS11275 SM00419 helix_turn_helix, cAMP Regulatory protein RD1_RS11310 SM00911 HWE histidine kinase RD1_RS11325 SM00448 cheY-homologous receiver domain RD1_RS11385 SM00155 Phospholipase D. Active site motifs. RD1_RS11455 SM00191 Integrin alpha (beta-propellor repeats). RD1_RS11510 SM00822 RD1_RS11510 RD1_RS11545 SM00344 helix_turn_helix ASNC type RD1_RS11550 SM00028 Tetratricopeptide repeats RD1_RS11560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RD1_RS11560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RD1_RS11585 SM00867 YceI-like domain RD1_RS11630 SM00267 diguanylate cyclase RD1_RS11630 SM00448 cheY-homologous receiver domain RD1_RS11655 SM00267 diguanylate cyclase RD1_RS11710 SM00020 Trypsin-like serine protease RD1_RS11715 SM01323 RD1_RS11715 RD1_RS11735 SM00382 ATPases associated with a variety of cellular activities RD1_RS11795 SM00998 Adenylosuccinate lyase C-terminus RD1_RS11840 SM01230 RD1_RS11840 RD1_RS11845 SM00938 Nitrogen regulatory protein P-II RD1_RS11880 SM00382 ATPases associated with a variety of cellular activities RD1_RS11895 SM00342 helix_turn_helix, arabinose operon control protein RD1_RS11930 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RD1_RS11940 SM00935 Outer membrane protein (OmpH-like) RD1_RS11975 SM00448 cheY-homologous receiver domain RD1_RS11975 SM00862 Transcriptional regulatory protein, C terminal RD1_RS11980 SM00292 breast cancer carboxy-terminal domain RD1_RS11980 SM00532 Ligase N family RD1_RS11985 SM00487 DEAD-like helicases superfamily RD1_RS11985 SM00490 helicase superfamily c-terminal domain RD1_RS11995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RD1_RS12075 SM00825 Beta-ketoacyl synthase RD1_RS12100 SM00382 ATPases associated with a variety of cellular activities RD1_RS12105 SM00382 ATPases associated with a variety of cellular activities RD1_RS12120 SM00342 helix_turn_helix, arabinose operon control protein RD1_RS12140 SM00072 Guanylate kinase homologues. RD1_RS12155 SM00387 Histidine kinase-like ATPases RD1_RS12155 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS12175 SM00382 ATPases associated with a variety of cellular activities RD1_RS12185 SM00448 cheY-homologous receiver domain RD1_RS12185 SM00862 Transcriptional regulatory protein, C terminal RD1_RS12220 SM00563 Phosphate acyltransferases RD1_RS12240 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase RD1_RS12310 SM00382 ATPases associated with a variety of cellular activities RD1_RS12360 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain RD1_RS12390 SM00382 ATPases associated with a variety of cellular activities RD1_RS12425 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RD1_RS12430 SM01329 RD1_RS12430 RD1_RS12440 SM00838 Elongation factor G C-terminus RD1_RS12450 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RD1_RS12455 SM00382 ATPases associated with a variety of cellular activities RD1_RS12460 SM00387 Histidine kinase-like ATPases RD1_RS12460 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS12460 SM00448 cheY-homologous receiver domain RD1_RS12470 SM00116 Domain in cystathionine beta-synthase and other proteins. RD1_RS12470 SM01240 RD1_RS12470 RD1_RS12520 SM00434 DNA Topoisomerase IV RD1_RS12585 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS12605 SM00487 DEAD-like helicases superfamily RD1_RS12605 SM00490 helicase superfamily c-terminal domain RD1_RS12605 SM00982 RD1_RS12605 RD1_RS12605 SM01058 CarD-like/TRCF domain RD1_RS12615 SM01004 Delta-aminolevulinic acid dehydratase RD1_RS12670 SM00382 ATPases associated with a variety of cellular activities RD1_RS12670 SM00448 cheY-homologous receiver domain RD1_RS12675 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RD1_RS12675 SM00387 Histidine kinase-like ATPases RD1_RS12675 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS12680 SM00382 ATPases associated with a variety of cellular activities RD1_RS12680 SM00448 cheY-homologous receiver domain RD1_RS12685 SM00387 Histidine kinase-like ATPases RD1_RS12685 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS12730 SM00729 Elongator protein 3, MiaB family, Radical SAM RD1_RS12825 SM00382 ATPases associated with a variety of cellular activities RD1_RS12905 SM00387 Histidine kinase-like ATPases RD1_RS12905 SM01049 RD1_RS12905 RD1_RS12910 SM00421 helix_turn_helix, Lux Regulon RD1_RS12910 SM00448 cheY-homologous receiver domain RD1_RS12940 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS12960 SM00937 RD1_RS12960 RD1_RS12970 SM00646 RD1_RS12970 RD1_RS12980 SM00028 Tetratricopeptide repeats RD1_RS13035 SM00855 Phosphoglycerate mutase family RD1_RS13060 SM00387 Histidine kinase-like ATPases RD1_RS13060 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS13070 SM00448 cheY-homologous receiver domain RD1_RS13075 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS13095 SM00382 ATPases associated with a variety of cellular activities RD1_RS13100 SM00382 ATPases associated with a variety of cellular activities RD1_RS13120 SM00878 Biotin carboxylase C-terminal domain RD1_RS13150 SM00382 ATPases associated with a variety of cellular activities RD1_RS13150 SM00994 ClpX C4-type zinc finger RD1_RS13150 SM01086 C-terminal, D2-small domain, of ClpB protein RD1_RS13165 SM00382 ATPases associated with a variety of cellular activities RD1_RS13170 SM00346 helix_turn_helix isocitrate lyase regulation RD1_RS13195 SM00822 RD1_RS13195 RD1_RS13225 SM00642 Alpha-amylase domain RD1_RS13240 SM00642 Alpha-amylase domain RD1_RS13265 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RD1_RS13285 SM00420 helix_turn_helix, Deoxyribose operon repressor RD1_RS13285 SM01134 RD1_RS13285 RD1_RS13305 SM01119 RD1_RS13305 RD1_RS13320 SM00346 helix_turn_helix isocitrate lyase regulation RD1_RS13325 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS13325 SM00895 RD1_RS13325 RD1_RS13340 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RD1_RS13400 SM00382 ATPases associated with a variety of cellular activities RD1_RS13425 SM00382 ATPases associated with a variety of cellular activities RD1_RS13460 SM00354 helix_turn _helix lactose operon repressor RD1_RS13465 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RD1_RS13470 SM00861 Transketolase, pyrimidine binding domain RD1_RS13475 SM00028 Tetratricopeptide repeats RD1_RS13475 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain RD1_RS13495 SM00382 ATPases associated with a variety of cellular activities RD1_RS13515 SM00382 ATPases associated with a variety of cellular activities RD1_RS13545 SM00387 Histidine kinase-like ATPases RD1_RS13545 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS13550 SM00448 cheY-homologous receiver domain RD1_RS13550 SM00862 Transcriptional regulatory protein, C terminal RD1_RS13570 SM00382 ATPases associated with a variety of cellular activities RD1_RS13570 SM00464 Found in ATP-dependent protease La (LON) RD1_RS13590 SM00244 prohibitin homologues RD1_RS13610 SM01266 RD1_RS13610 RD1_RS13630 SM00344 helix_turn_helix ASNC type RD1_RS13675 SM01092 CO dehydrogenase flavoprotein C-terminal domain RD1_RS13680 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD1_RS13725 SM00861 Transketolase, pyrimidine binding domain RD1_RS13735 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RD1_RS13745 SM00116 Domain in cystathionine beta-synthase and other proteins. RD1_RS13845 SM00861 Transketolase, pyrimidine binding domain RD1_RS13855 SM00971 Serine acetyltransferase, N-terminal RD1_RS13950 SM00825 Beta-ketoacyl synthase RD1_RS13960 SM00823 Phosphopantetheine attachment site RD1_RS13965 SM00822 RD1_RS13965 RD1_RS13970 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RD1_RS13975 SM00867 YceI-like domain RD1_RS13980 SM00867 YceI-like domain RD1_RS14015 SM00100 Cyclic nucleotide-monophosphate binding domain RD1_RS14060 SM00448 cheY-homologous receiver domain RD1_RS14065 SM00073 Histidine Phosphotransfer domain RD1_RS14065 SM00260 Two component signalling adaptor domain RD1_RS14065 SM00387 Histidine kinase-like ATPases RD1_RS14065 SM01231 RD1_RS14065 RD1_RS14070 SM00260 Two component signalling adaptor domain RD1_RS14075 SM00138 Methyltransferase, chemotaxis proteins RD1_RS14080 SM00448 cheY-homologous receiver domain RD1_RS14125 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS14155 SM00382 ATPases associated with a variety of cellular activities RD1_RS14165 SM00420 helix_turn_helix, Deoxyribose operon repressor RD1_RS14165 SM01134 RD1_RS14165 RD1_RS14170 SM01007 Class II Aldolase and Adducin N-terminal domain RD1_RS14180 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RD1_RS14180 SM00091 PAS domain RD1_RS14180 SM00387 Histidine kinase-like ATPases RD1_RS14180 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS14185 SM00421 helix_turn_helix, Lux Regulon RD1_RS14185 SM00448 cheY-homologous receiver domain RD1_RS14210 SM00116 Domain in cystathionine beta-synthase and other proteins. RD1_RS14210 SM01091 Transporter associated domain RD1_RS14245 SM00382 ATPases associated with a variety of cellular activities RD1_RS14280 SM00091 PAS domain RD1_RS14280 SM00138 Methyltransferase, chemotaxis proteins RD1_RS14300 SM00562 RD1_RS14300 RD1_RS14305 SM00382 ATPases associated with a variety of cellular activities RD1_RS14310 SM00989 RD1_RS14310 RD1_RS14360 SM00650 Ribosomal RNA adenine dimethylases RD1_RS14375 SM00937 RD1_RS14375 RD1_RS14430 SM00487 DEAD-like helicases superfamily RD1_RS14430 SM00490 helicase superfamily c-terminal domain RD1_RS14445 SM01192 RD1_RS14445 RD1_RS14445 SM01193 RD1_RS14445 RD1_RS14480 SM00382 ATPases associated with a variety of cellular activities RD1_RS14515 SM00411 bacterial (prokaryotic) histone like domain RD1_RS14520 SM00422 helix_turn_helix, mercury resistance RD1_RS14555 SM00836 DALR anticodon binding domain RD1_RS14555 SM01016 Arginyl tRNA synthetase N terminal dom RD1_RS14560 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RD1_RS14590 SM00507 HNH nucleases RD1_RS14605 SM00478 endonuclease III RD1_RS14625 SM00917 LeuA allosteric (dimerisation) domain RD1_RS14675 SM00357 Cold shock protein domain RD1_RS14720 SM00052 Putative diguanylate phosphodiesterase RD1_RS14720 SM00267 diguanylate cyclase RD1_RS14740 SM00986 Uracil DNA glycosylase superfamily RD1_RS14740 SM00987 UreE urease accessory protein, C-terminal domain RD1_RS14755 SM00852 Probable molybdopterin binding domain RD1_RS14815 SM00859 Semialdehyde dehydrogenase, NAD binding domain RD1_RS14825 SM00563 Phosphate acyltransferases RD1_RS14845 SM00327 von Willebrand factor (vWF) type A domain RD1_RS14850 SM00382 ATPases associated with a variety of cellular activities RD1_RS14875 SM01005 Alanine racemase, C-terminal domain RD1_RS14885 SM00382 ATPases associated with a variety of cellular activities RD1_RS14895 SM00382 ATPases associated with a variety of cellular activities RD1_RS14925 SM00257 Lysin motif RD1_RS14970 SM00382 ATPases associated with a variety of cellular activities RD1_RS14985 SM00487 DEAD-like helicases superfamily RD1_RS14985 SM00490 helicase superfamily c-terminal domain RD1_RS14990 SM00849 Metallo-beta-lactamase superfamily RD1_RS15055 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RD1_RS15075 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RD1_RS15125 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. RD1_RS15145 SM00878 Biotin carboxylase C-terminal domain RD1_RS15145 SM01209 RD1_RS15145 RD1_RS15195 SM00729 Elongator protein 3, MiaB family, Radical SAM RD1_RS15250 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RD1_RS15250 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RD1_RS15260 SM00822 RD1_RS15260 RD1_RS15305 SM00845 GatB domain RD1_RS15335 SM00271 DnaJ molecular chaperone homology domain RD1_RS15345 SM00327 von Willebrand factor (vWF) type A domain RD1_RS15385 SM00842 Cell division protein FtsA RD1_RS15495 SM00878 Biotin carboxylase C-terminal domain RD1_RS15565 SM00363 S4 RNA-binding domain RD1_RS15565 SM01390 RD1_RS15565 RD1_RS15575 SM00052 Putative diguanylate phosphodiesterase RD1_RS15585 SM00822 RD1_RS15585 RD1_RS15615 SM00028 Tetratricopeptide repeats RD1_RS15640 SM00852 Probable molybdopterin binding domain RD1_RS15685 SM00849 Metallo-beta-lactamase superfamily RD1_RS15720 SM00852 Probable molybdopterin binding domain RD1_RS15730 SM00986 Uracil DNA glycosylase superfamily RD1_RS15730 SM00987 UreE urease accessory protein, C-terminal domain RD1_RS15750 SM01207 RD1_RS15750 RD1_RS15800 SM00829 Enoylreductase RD1_RS15835 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS15915 SM00387 Histidine kinase-like ATPases RD1_RS15920 SM00448 cheY-homologous receiver domain RD1_RS15920 SM00862 Transcriptional regulatory protein, C terminal RD1_RS15935 SM00936 Penicillin-binding protein 5, C-terminal domain RD1_RS15945 SM00382 ATPases associated with a variety of cellular activities RD1_RS15955 SM00849 Metallo-beta-lactamase superfamily RD1_RS16015 SM00382 ATPases associated with a variety of cellular activities RD1_RS16040 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RD1_RS16055 SM00851 MGS-like domain RD1_RS16055 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RD1_RS16120 SM00344 helix_turn_helix ASNC type RD1_RS16150 SM01001 AIR carboxylase RD1_RS16185 SM00883 Chaperonin 10 Kd subunit RD1_RS16200 SM01131 RD1_RS16200 RD1_RS16215 SM00904 Riboflavin kinase RD1_RS16240 SM01400 RD1_RS16240 RD1_RS16260 SM00382 ATPases associated with a variety of cellular activities RD1_RS16285 SM00849 Metallo-beta-lactamase superfamily RD1_RS16290 SM00382 ATPases associated with a variety of cellular activities RD1_RS16290 SM01086 C-terminal, D2-small domain, of ClpB protein RD1_RS16295 SM00487 DEAD-like helicases superfamily RD1_RS16295 SM00490 helicase superfamily c-terminal domain RD1_RS16390 SM00881 CoA binding domain RD1_RS16400 SM00967 RNA 2'-O ribose methyltransferase substrate binding RD1_RS16430 SM00382 ATPases associated with a variety of cellular activities RD1_RS16435 SM00420 helix_turn_helix, Deoxyribose operon repressor RD1_RS16435 SM01134 RD1_RS16435 RD1_RS16455 SM00091 PAS domain RD1_RS16455 SM00387 Histidine kinase-like ATPases RD1_RS16455 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS16455 SM00448 cheY-homologous receiver domain RD1_RS16465 SM00421 helix_turn_helix, Lux Regulon RD1_RS16465 SM00448 cheY-homologous receiver domain RD1_RS16480 SM00342 helix_turn_helix, arabinose operon control protein RD1_RS16495 SM00382 ATPases associated with a variety of cellular activities RD1_RS16500 SM00382 ATPases associated with a variety of cellular activities RD1_RS16535 SM00421 helix_turn_helix, Lux Regulon RD1_RS16535 SM00448 cheY-homologous receiver domain RD1_RS16540 SM00387 Histidine kinase-like ATPases RD1_RS16540 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS16540 SM00448 cheY-homologous receiver domain RD1_RS16560 SM00382 ATPases associated with a variety of cellular activities RD1_RS16565 SM00382 ATPases associated with a variety of cellular activities RD1_RS16665 SM00382 ATPases associated with a variety of cellular activities RD1_RS16670 SM00829 Enoylreductase RD1_RS16700 SM01007 Class II Aldolase and Adducin N-terminal domain RD1_RS16710 SM01007 Class II Aldolase and Adducin N-terminal domain RD1_RS16725 SM00382 ATPases associated with a variety of cellular activities RD1_RS16730 SM00382 ATPases associated with a variety of cellular activities RD1_RS16780 SM00346 helix_turn_helix isocitrate lyase regulation RD1_RS16785 SM00347 helix_turn_helix multiple antibiotic resistance protein RD1_RS16815 SM00886 Stress responsive A/B Barrel Domain RD1_RS16820 SM01018 B12 binding domain RD1_RS16845 SM00448 cheY-homologous receiver domain RD1_RS16845 SM00862 Transcriptional regulatory protein, C terminal RD1_RS16850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RD1_RS16850 SM00387 Histidine kinase-like ATPases RD1_RS16850 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS16850 SM00448 cheY-homologous receiver domain RD1_RS16970 SM00387 Histidine kinase-like ATPases RD1_RS16980 SM00100 Cyclic nucleotide-monophosphate binding domain RD1_RS16990 SM00052 Putative diguanylate phosphodiesterase RD1_RS16990 SM00267 diguanylate cyclase RD1_RS16995 SM01120 RD1_RS16995 RD1_RS17045 SM00642 Alpha-amylase domain RD1_RS17055 SM00665 Cytochrome b-561 / ferric reductase transmembrane domain. RD1_RS17075 SM00382 ATPases associated with a variety of cellular activities RD1_RS17080 SM00354 helix_turn _helix lactose operon repressor RD1_RS17085 SM00758 RD1_RS17085 RD1_RS17090 SM00382 ATPases associated with a variety of cellular activities RD1_RS17095 SM00382 ATPases associated with a variety of cellular activities RD1_RS17145 SM00382 ATPases associated with a variety of cellular activities RD1_RS17325 SM00342 helix_turn_helix, arabinose operon control protein RD1_RS17335 SM01007 Class II Aldolase and Adducin N-terminal domain RD1_RS17350 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS17350 SM00895 RD1_RS17350 RD1_RS17360 SM01329 RD1_RS17360 RD1_RS17370 SM00849 Metallo-beta-lactamase superfamily RD1_RS17410 SM00988 UreE urease accessory protein, N-terminal domain RD1_RS17430 SM00354 helix_turn _helix lactose operon repressor RD1_RS17535 SM00833 Cobalamin synthesis protein cobW C-terminal domain RD1_RS17550 SM00155 Phospholipase D. Active site motifs. RD1_RS17595 SM00710 Parallel beta-helix repeats RD1_RS17635 SM00382 ATPases associated with a variety of cellular activities RD1_RS17645 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS17665 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RD1_RS17685 SM00382 ATPases associated with a variety of cellular activities RD1_RS17710 SM00342 helix_turn_helix, arabinose operon control protein RD1_RS17765 SM00382 ATPases associated with a variety of cellular activities RD1_RS17785 SM00382 ATPases associated with a variety of cellular activities RD1_RS17795 SM00354 helix_turn _helix lactose operon repressor RD1_RS17805 SM01120 RD1_RS17805 RD1_RS17815 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS17900 SM00411 bacterial (prokaryotic) histone like domain RD1_RS17905 SM00316 Ribosomal protein S1-like RNA-binding domain RD1_RS17940 SM00116 Domain in cystathionine beta-synthase and other proteins. RD1_RS17940 SM01091 Transporter associated domain RD1_RS17955 SM00729 Elongator protein 3, MiaB family, Radical SAM RD1_RS17970 SM00825 Beta-ketoacyl synthase RD1_RS18015 SM00998 Adenylosuccinate lyase C-terminus RD1_RS18025 SM00829 Enoylreductase RD1_RS18030 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RD1_RS18055 SM00354 helix_turn _helix lactose operon repressor RD1_RS18095 SM00382 ATPases associated with a variety of cellular activities RD1_RS18145 SM00422 helix_turn_helix, mercury resistance RD1_RS18155 SM00421 helix_turn_helix, Lux Regulon RD1_RS18160 SM00422 helix_turn_helix, mercury resistance RD1_RS18210 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain RD1_RS18285 SM00822 RD1_RS18285 RD1_RS18290 SM00345 helix_turn_helix gluconate operon transcriptional repressor RD1_RS18290 SM00895 RD1_RS18290 RD1_RS18325 SM00382 ATPases associated with a variety of cellular activities RD1_RS18335 SM00460 Transglutaminase/protease-like homologues RD1_RS18350 SM00318 Staphylococcal nuclease homologues RD1_RS18360 SM00838 Elongation factor G C-terminus RD1_RS18360 SM00889 Elongation factor G, domain IV RD1_RS18380 SM00663 RNA polymerase I subunit A N-terminus RD1_RS18410 SM00649 Ribosomal protein L11/L12 RD1_RS18415 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RD1_RS18415 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RD1_RS18440 SM00382 ATPases associated with a variety of cellular activities RD1_RS18455 SM00867 YceI-like domain RD1_RS18545 SM00487 DEAD-like helicases superfamily RD1_RS18570 SM00382 ATPases associated with a variety of cellular activities RD1_RS18575 SM00530 Helix-turn-helix XRE-family like proteins RD1_RS18605 SM00481 DNA polymerase alpha chain like domain RD1_RS18610 SM01092 CO dehydrogenase flavoprotein C-terminal domain RD1_RS18615 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RD1_RS18625 SM00382 ATPases associated with a variety of cellular activities RD1_RS18730 SM00382 ATPases associated with a variety of cellular activities RD1_RS18745 SM00829 Enoylreductase RD1_RS18780 SM00346 helix_turn_helix isocitrate lyase regulation RD1_RS18785 SM00460 Transglutaminase/protease-like homologues RD1_RS18860 SM00382 ATPases associated with a variety of cellular activities RD1_RS18865 SM00382 ATPases associated with a variety of cellular activities RD1_RS18880 SM00235 Zinc-dependent metalloprotease RD1_RS18890 SM00382 ATPases associated with a variety of cellular activities RD1_RS18960 SM00644 RD1_RS18960 RD1_RS19060 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RD1_RS19075 SM00382 ATPases associated with a variety of cellular activities RD1_RS19095 SM01012 RD1_RS19095 RD1_RS19180 SM00382 ATPases associated with a variety of cellular activities RD1_RS19225 SM00850 LytTr DNA-binding domain RD1_RS19230 SM00382 ATPases associated with a variety of cellular activities RD1_RS19250 SM00858 RD1_RS19250 RD1_RS19265 SM00052 Putative diguanylate phosphodiesterase RD1_RS19265 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RD1_RS19265 SM00091 PAS domain RD1_RS19265 SM00267 diguanylate cyclase RD1_RS19275 SM00062 Bacterial periplasmic substrate-binding proteins RD1_RS19355 SM00382 ATPases associated with a variety of cellular activities RD1_RS19370 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RD1_RS19375 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RD1_RS19375 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RD1_RS19415 SM00421 helix_turn_helix, Lux Regulon RD1_RS19430 SM00881 CoA binding domain RD1_RS19450 SM01230 RD1_RS19450 RD1_RS20425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RD1_RS20425 SM00387 Histidine kinase-like ATPases RD1_RS20425 SM00388 His Kinase A (phosphoacceptor) domain RD1_RS20480 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RD1_RS20485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RD1_RS20485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain