RD1_RS09300 e3fa36d8fec18f71811b87b3ca946f9c 190 PANTHER PTHR23407:SF1 47 188 4.0E-32 T 23-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RD1_RS09300 e3fa36d8fec18f71811b87b3ca946f9c 190 SUPERFAMILY SSF100950 7 185 2.37E-39 T 23-04-2016 RD1_RS09300 e3fa36d8fec18f71811b87b3ca946f9c 190 PANTHER PTHR23407 47 188 4.0E-32 T 23-04-2016 RD1_RS09300 e3fa36d8fec18f71811b87b3ca946f9c 190 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 8 179 1.3E-24 T 23-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RD1_RS09300 e3fa36d8fec18f71811b87b3ca946f9c 190 Gene3D G3DSA:3.40.50.10420 8 185 8.0E-38 T 23-04-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain RD1_RS09300 e3fa36d8fec18f71811b87b3ca946f9c 190 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 8 179 4.4E-36 T 23-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RD1_RS11895 d1bfb749cbb075e897d35d547d92772e 267 Gene3D G3DSA:1.10.10.60 165 205 7.4E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS11895 d1bfb749cbb075e897d35d547d92772e 267 Gene3D G3DSA:1.10.10.60 212 259 8.8E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS11895 d1bfb749cbb075e897d35d547d92772e 267 PANTHER PTHR11019 32 265 2.2E-27 T 23-04-2016 RD1_RS11895 d1bfb749cbb075e897d35d547d92772e 267 PANTHER PTHR11019:SF45 32 265 2.2E-27 T 23-04-2016 RD1_RS11895 d1bfb749cbb075e897d35d547d92772e 267 SUPERFAMILY SSF46689 213 259 1.97E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS11895 d1bfb749cbb075e897d35d547d92772e 267 SUPERFAMILY SSF51215 24 86 8.76E-5 T 23-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RD1_RS11895 d1bfb749cbb075e897d35d547d92772e 267 Pfam PF12833 Helix-turn-helix domain 181 258 5.3E-16 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS11895 d1bfb749cbb075e897d35d547d92772e 267 SMART SM00342 174 257 7.4E-15 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 4 569 5.4E-294 T 23-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 PANTHER PTHR22642:SF7 25 298 3.1E-258 T 23-04-2016 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 PANTHER PTHR22642:SF7 322 503 3.1E-258 T 23-04-2016 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 PANTHER PTHR22642 25 298 3.1E-258 T 23-04-2016 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 PANTHER PTHR22642 322 503 3.1E-258 T 23-04-2016 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 Gene3D G3DSA:3.20.20.140 490 567 4.8E-211 T 23-04-2016 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 Gene3D G3DSA:3.20.20.140 138 431 4.8E-211 T 23-04-2016 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 ProSitePatterns PS01120 Urease nickel ligands signature. 129 142 - T 23-04-2016 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 Pfam PF01979 Amidohydrolase family 127 450 9.9E-75 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 SUPERFAMILY SSF51556 132 433 5.21E-199 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 SUPERFAMILY SSF51556 482 569 5.21E-199 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 Hamap MF_01953 Urease subunit alpha [ureC]. 3 569 56.312 T 23-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 ProSitePatterns PS00145 Urease active site. 319 335 - T 23-04-2016 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 SUPERFAMILY SSF51338 4 179 2.82E-65 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 297 314 1.58E-33 T 23-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 336 352 1.58E-33 T 23-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 429 442 1.58E-33 T 23-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 403 418 1.58E-33 T 23-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 Pfam PF00449 Urease alpha-subunit, N-terminal domain 4 121 2.0E-56 T 23-04-2016 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 Gene3D G3DSA:2.30.40.10 69 137 4.7E-14 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS17400 a711bc53171cd19065a22133e9997ebf 569 SUPERFAMILY SSF51338 424 479 2.08E-6 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS07085 7b9832e9ca40996726245fa504252135 155 PANTHER PTHR33164 10 144 9.5E-29 T 23-04-2016 RD1_RS07085 7b9832e9ca40996726245fa504252135 155 SUPERFAMILY SSF46785 11 147 3.12E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07085 7b9832e9ca40996726245fa504252135 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 97 113 4.8E-6 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS07085 7b9832e9ca40996726245fa504252135 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 61 77 4.8E-6 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS07085 7b9832e9ca40996726245fa504252135 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 127 147 4.8E-6 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS07085 7b9832e9ca40996726245fa504252135 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 78 93 4.8E-6 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS07085 7b9832e9ca40996726245fa504252135 155 Gene3D G3DSA:1.10.10.10 12 146 2.6E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07085 7b9832e9ca40996726245fa504252135 155 PANTHER PTHR33164:SF8 10 144 9.5E-29 T 23-04-2016 RD1_RS07085 7b9832e9ca40996726245fa504252135 155 SMART SM00347 37 137 3.9E-15 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS07085 7b9832e9ca40996726245fa504252135 155 Pfam PF01047 MarR family 44 101 1.1E-13 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS15745 0ebe207330c280f878d78aeee5cc5466 426 Gene3D G3DSA:2.30.40.10 3 57 1.5E-8 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS15745 0ebe207330c280f878d78aeee5cc5466 426 Gene3D G3DSA:2.30.40.10 378 425 1.5E-8 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS15745 0ebe207330c280f878d78aeee5cc5466 426 SUPERFAMILY SSF51338 4 56 3.24E-23 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS15745 0ebe207330c280f878d78aeee5cc5466 426 SUPERFAMILY SSF51338 368 424 3.24E-23 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS15745 0ebe207330c280f878d78aeee5cc5466 426 PANTHER PTHR11647:SF70 1 425 3.8E-114 T 23-04-2016 RD1_RS15745 0ebe207330c280f878d78aeee5cc5466 426 Pfam PF01979 Amidohydrolase family 55 422 2.9E-14 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RD1_RS15745 0ebe207330c280f878d78aeee5cc5466 426 PANTHER PTHR11647 1 425 3.8E-114 T 23-04-2016 RD1_RS15745 0ebe207330c280f878d78aeee5cc5466 426 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 24 425 1.5E-91 T 23-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS15745 0ebe207330c280f878d78aeee5cc5466 426 Hamap MF_00220_B Dihydroorotase [pyrC]. 4 426 31.138 T 23-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS15745 0ebe207330c280f878d78aeee5cc5466 426 Gene3D G3DSA:3.20.20.140 58 377 3.4E-82 T 23-04-2016 RD1_RS15745 0ebe207330c280f878d78aeee5cc5466 426 SUPERFAMILY SSF51556 57 369 5.11E-87 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS08030 0a0110e67fc754674f9f095bb1d2173b 479 Pfam PF02321 Outer membrane efflux protein 250 427 1.4E-28 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RD1_RS08030 0a0110e67fc754674f9f095bb1d2173b 479 Pfam PF02321 Outer membrane efflux protein 37 230 8.1E-22 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RD1_RS08030 0a0110e67fc754674f9f095bb1d2173b 479 PANTHER PTHR30026:SF3 5 458 4.6E-72 T 23-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 RD1_RS08030 0a0110e67fc754674f9f095bb1d2173b 479 PANTHER PTHR30026 5 458 4.6E-72 T 23-04-2016 RD1_RS08030 0a0110e67fc754674f9f095bb1d2173b 479 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 33 446 7.9E-86 T 23-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 RD1_RS08030 0a0110e67fc754674f9f095bb1d2173b 479 SUPERFAMILY SSF56954 14 434 1.7E-81 T 23-04-2016 RD1_RS08030 0a0110e67fc754674f9f095bb1d2173b 479 Gene3D G3DSA:1.20.1600.10 31 435 4.6E-73 T 23-04-2016 RD1_RS14765 74c50cf18828a562dc17db04638f0832 703 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 278 464 2.1E-21 T 23-04-2016 IPR004477 ComEC/Rec2-related protein RD1_RS14765 74c50cf18828a562dc17db04638f0832 703 PANTHER PTHR30619 37 550 4.9E-60 T 23-04-2016 RD1_RS14765 74c50cf18828a562dc17db04638f0832 703 Pfam PF03772 Competence protein 258 534 4.5E-58 T 23-04-2016 IPR004477 ComEC/Rec2-related protein RD1_RS14765 74c50cf18828a562dc17db04638f0832 703 Pfam PF13567 Domain of unknown function (DUF4131) 47 199 1.8E-12 T 23-04-2016 IPR025405 Domain of unknown function DUF4131 RD1_RS14765 74c50cf18828a562dc17db04638f0832 703 PANTHER PTHR30619:SF2 37 550 4.9E-60 T 23-04-2016 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 12 997 19.508 T 23-04-2016 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 38 714 2.4E-171 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 Pfam PF08264 Anticodon-binding domain of tRNA 759 895 2.5E-24 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 Gene3D G3DSA:3.40.50.620 23 222 8.0E-129 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 Gene3D G3DSA:3.40.50.620 465 710 8.0E-129 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 SUPERFAMILY SSF50677 226 462 2.62E-34 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 25 910 3.8E-235 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 SUPERFAMILY SSF47323 727 996 1.26E-58 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 600 613 7.0E-30 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 267 290 7.0E-30 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 460 475 7.0E-30 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 636 645 7.0E-30 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 70 81 7.0E-30 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 PANTHER PTHR11946:SF11 16 288 0.0 T 23-04-2016 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 PANTHER PTHR11946:SF11 324 917 0.0 T 23-04-2016 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 Gene3D G3DSA:1.10.730.10 718 897 9.5E-40 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 Gene3D G3DSA:3.90.740.10 229 448 5.6E-38 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 PANTHER PTHR11946 16 288 0.0 T 23-04-2016 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 PANTHER PTHR11946 324 917 0.0 T 23-04-2016 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 SUPERFAMILY SSF52374 462 723 6.05E-121 T 23-04-2016 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 SUPERFAMILY SSF52374 13 224 6.05E-121 T 23-04-2016 RD1_RS09605 18d0d7a2ca927a1f4708381e7e753adb 997 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 77 88 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS00245 334c9459c8482245805a382419f9a94c 444 Gene3D G3DSA:2.30.30.60 285 332 3.3E-13 T 23-04-2016 RD1_RS00245 334c9459c8482245805a382419f9a94c 444 PANTHER PTHR30347 150 438 2.0E-66 T 23-04-2016 RD1_RS00245 334c9459c8482245805a382419f9a94c 444 PANTHER PTHR30347:SF3 150 438 2.0E-66 T 23-04-2016 RD1_RS00245 334c9459c8482245805a382419f9a94c 444 SUPERFAMILY SSF50182 267 333 3.92E-13 T 23-04-2016 IPR010920 LSM domain RD1_RS00245 334c9459c8482245805a382419f9a94c 444 Gene3D G3DSA:3.30.70.100 340 424 9.1E-16 T 23-04-2016 RD1_RS00245 334c9459c8482245805a382419f9a94c 444 SUPERFAMILY SSF82861 181 265 4.18E-12 T 23-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RD1_RS00245 334c9459c8482245805a382419f9a94c 444 SUPERFAMILY SSF82689 339 437 7.72E-24 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RD1_RS00245 334c9459c8482245805a382419f9a94c 444 Pfam PF00924 Mechanosensitive ion channel 224 426 8.2E-40 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 Hamap MF_00098 Methionine--tRNA ligase [metG]. 2 566 36.682 T 23-04-2016 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 PRINTS PR01041 Methionyl-tRNA synthetase signature 39 53 7.1E-28 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 PRINTS PR01041 Methionyl-tRNA synthetase signature 6 19 7.1E-28 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 PRINTS PR01041 Methionyl-tRNA synthetase signature 87 98 7.1E-28 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 PRINTS PR01041 Methionyl-tRNA synthetase signature 258 269 7.1E-28 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 PRINTS PR01041 Methionyl-tRNA synthetase signature 303 318 7.1E-28 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 PRINTS PR01041 Methionyl-tRNA synthetase signature 397 408 7.1E-28 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 PANTHER PTHR11946:SF86 2 572 1.2E-190 T 23-04-2016 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 5 554 4.8E-134 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 Gene3D G3DSA:1.10.730.10 393 555 3.8E-35 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 Pfam PF09334 tRNA synthetases class I (M) 4 409 1.3E-141 T 23-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 Gene3D G3DSA:3.40.50.620 4 141 4.6E-78 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 Gene3D G3DSA:3.40.50.620 181 392 4.6E-78 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 PANTHER PTHR11946 2 572 1.2E-190 T 23-04-2016 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 Gene3D G3DSA:2.20.28.20 142 173 1.3E-18 T 23-04-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 SUPERFAMILY SSF47323 398 555 4.86E-33 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 SUPERFAMILY SSF57770 139 173 1.44E-11 T 23-04-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 SUPERFAMILY SSF52374 174 397 4.97E-78 T 23-04-2016 RD1_RS11575 a425d97e1c2298f882e13062e34440d7 572 SUPERFAMILY SSF52374 3 138 4.97E-78 T 23-04-2016 RD1_RS01870 8a0b049f3027a6aec105289766a6d5ef 203 Pfam PF03734 L,D-transpeptidase catalytic domain 73 200 9.1E-14 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RD1_RS01870 8a0b049f3027a6aec105289766a6d5ef 203 PANTHER PTHR30582:SF1 68 203 4.2E-35 T 23-04-2016 RD1_RS01870 8a0b049f3027a6aec105289766a6d5ef 203 Gene3D G3DSA:2.40.440.10 67 202 5.4E-30 T 23-04-2016 RD1_RS01870 8a0b049f3027a6aec105289766a6d5ef 203 PANTHER PTHR30582 68 203 4.2E-35 T 23-04-2016 RD1_RS01870 8a0b049f3027a6aec105289766a6d5ef 203 SUPERFAMILY SSF141523 66 202 7.06E-28 T 23-04-2016 RD1_RS17485 e1903108a4ab360aee34baa999e0a905 438 SUPERFAMILY SSF52317 247 433 8.82E-27 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS17485 e1903108a4ab360aee34baa999e0a905 438 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 9 431 5.5E-88 T 23-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 RD1_RS17485 e1903108a4ab360aee34baa999e0a905 438 PANTHER PTHR21343:SF6 6 433 2.4E-129 T 23-04-2016 RD1_RS17485 e1903108a4ab360aee34baa999e0a905 438 PANTHER PTHR21343 6 433 2.4E-129 T 23-04-2016 RD1_RS17485 e1903108a4ab360aee34baa999e0a905 438 Gene3D G3DSA:3.40.50.880 248 432 1.0E-18 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS17485 e1903108a4ab360aee34baa999e0a905 438 Hamap MF_00027 Cobyrinate a,c-diamide synthase [cbiA]. 5 438 40.16 T 23-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 RD1_RS17485 e1903108a4ab360aee34baa999e0a905 438 SUPERFAMILY SSF52540 7 199 3.61E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17485 e1903108a4ab360aee34baa999e0a905 438 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 10 197 2.1E-20 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RD1_RS17485 e1903108a4ab360aee34baa999e0a905 438 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 247 434 2.2E-29 T 23-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 RD1_RS17485 e1903108a4ab360aee34baa999e0a905 438 Gene3D G3DSA:3.40.50.300 6 71 1.8E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17485 e1903108a4ab360aee34baa999e0a905 438 Gene3D G3DSA:3.40.50.300 77 198 2.0E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 PANTHER PTHR11624 245 633 2.3E-288 T 23-04-2016 IPR033247 Transketolase family RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 PANTHER PTHR11624 23 224 2.3E-288 T 23-04-2016 IPR033247 Transketolase family RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 12 632 5.6E-236 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 ProSitePatterns PS00801 Transketolase signature 1. 35 54 - T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 SUPERFAMILY SSF52518 322 510 8.98E-57 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 Gene3D G3DSA:3.40.50.970 25 204 2.5E-71 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 Gene3D G3DSA:3.40.50.970 246 339 2.5E-71 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 SMART SM00861 324 489 4.3E-60 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 10 287 1.3E-112 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 Gene3D G3DSA:3.40.50.920 502 632 1.1E-34 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 PANTHER PTHR11624:SF20 245 633 2.3E-288 T 23-04-2016 RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 PANTHER PTHR11624:SF20 23 224 2.3E-288 T 23-04-2016 RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 Pfam PF02779 Transketolase, pyrimidine binding domain 324 485 1.0E-36 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 ProSitePatterns PS00802 Transketolase signature 2. 430 446 - T 23-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 SUPERFAMILY SSF52922 496 633 7.72E-34 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 9 633 43.502 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 Gene3D G3DSA:3.40.50.970 340 501 1.3E-35 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 Pfam PF02780 Transketolase, C-terminal domain 501 624 5.1E-29 T 23-04-2016 IPR033248 Transketolase, C-terminal domain RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 SUPERFAMILY SSF52518 5 202 6.11E-72 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS02540 61cab74af851ef24a261ebf01bbfa512 642 SUPERFAMILY SSF52518 247 386 6.11E-72 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS16120 2a452ea66fc7dae8277c9876076aeadd 165 PANTHER PTHR30154 1 165 3.6E-66 T 23-04-2016 RD1_RS16120 2a452ea66fc7dae8277c9876076aeadd 165 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 3.2E-18 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS16120 2a452ea66fc7dae8277c9876076aeadd 165 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 3.2E-18 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS16120 2a452ea66fc7dae8277c9876076aeadd 165 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 3.2E-18 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS16120 2a452ea66fc7dae8277c9876076aeadd 165 Pfam PF13412 Winged helix-turn-helix DNA-binding 5 52 1.6E-21 T 23-04-2016 RD1_RS16120 2a452ea66fc7dae8277c9876076aeadd 165 SMART SM00344 5 114 5.2E-40 T 23-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RD1_RS16120 2a452ea66fc7dae8277c9876076aeadd 165 Gene3D G3DSA:1.10.10.10 1 56 4.2E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS16120 2a452ea66fc7dae8277c9876076aeadd 165 SUPERFAMILY SSF54909 68 150 6.3E-17 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS16120 2a452ea66fc7dae8277c9876076aeadd 165 Pfam PF01037 Lrp/AsnC ligand binding domain 73 144 6.1E-18 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS16120 2a452ea66fc7dae8277c9876076aeadd 165 SUPERFAMILY SSF46785 4 65 9.76E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS16120 2a452ea66fc7dae8277c9876076aeadd 165 ProSitePatterns PS00519 AsnC-type HTH domain signature. 23 49 - T 23-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RD1_RS16120 2a452ea66fc7dae8277c9876076aeadd 165 Gene3D G3DSA:3.30.70.920 58 142 3.3E-23 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS16120 2a452ea66fc7dae8277c9876076aeadd 165 PANTHER PTHR30154:SF22 1 165 3.6E-66 T 23-04-2016 RD1_RS03780 80b8829792a0326cb592873f69815f73 237 Gene3D G3DSA:3.40.50.1860 6 118 4.6E-33 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS03780 80b8829792a0326cb592873f69815f73 237 TIGRFAM TIGR00035 asp_race: aspartate racemase 6 226 1.7E-38 T 23-04-2016 IPR004380 Aspartate racemase GO:0006520|GO:0016855 RD1_RS03780 80b8829792a0326cb592873f69815f73 237 Pfam PF01177 Asp/Glu/Hydantoin racemase 10 225 4.0E-51 T 23-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS03780 80b8829792a0326cb592873f69815f73 237 PANTHER PTHR21198:SF6 1 226 1.0E-32 T 23-04-2016 RD1_RS03780 80b8829792a0326cb592873f69815f73 237 PANTHER PTHR21198 1 226 1.0E-32 T 23-04-2016 RD1_RS03780 80b8829792a0326cb592873f69815f73 237 SUPERFAMILY SSF53681 124 228 4.32E-17 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS03780 80b8829792a0326cb592873f69815f73 237 Gene3D G3DSA:3.40.50.1860 120 217 2.8E-13 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS03780 80b8829792a0326cb592873f69815f73 237 SUPERFAMILY SSF53681 5 115 4.58E-27 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS06915 7d77e356fdb4aee94e42387053481910 549 Gene3D G3DSA:3.90.660.10 72 138 1.6E-21 T 23-04-2016 RD1_RS06915 7d77e356fdb4aee94e42387053481910 549 Gene3D G3DSA:3.90.660.10 352 454 1.6E-21 T 23-04-2016 RD1_RS06915 7d77e356fdb4aee94e42387053481910 549 PANTHER PTHR10742:SF277 1 546 7.2E-74 T 23-04-2016 RD1_RS06915 7d77e356fdb4aee94e42387053481910 549 SUPERFAMILY SSF54373 349 463 1.83E-24 T 23-04-2016 RD1_RS06915 7d77e356fdb4aee94e42387053481910 549 SUPERFAMILY SSF51905 34 367 5.5E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS06915 7d77e356fdb4aee94e42387053481910 549 SUPERFAMILY SSF51905 485 525 5.5E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS06915 7d77e356fdb4aee94e42387053481910 549 Pfam PF01593 Flavin containing amine oxidoreductase 45 521 4.4E-36 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RD1_RS06915 7d77e356fdb4aee94e42387053481910 549 Gene3D G3DSA:3.50.50.60 35 71 5.8E-6 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS06915 7d77e356fdb4aee94e42387053481910 549 PANTHER PTHR10742 1 546 7.2E-74 T 23-04-2016 RD1_RS06915 7d77e356fdb4aee94e42387053481910 549 Gene3D G3DSA:3.50.50.60 488 534 4.7E-12 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS06915 7d77e356fdb4aee94e42387053481910 549 Gene3D G3DSA:3.50.50.60 228 348 4.7E-12 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS18985 be45a2704e19acdf3f341c86da467105 163 PANTHER PTHR21221:SF2 4 153 5.1E-31 T 23-04-2016 RD1_RS18985 be45a2704e19acdf3f341c86da467105 163 PANTHER PTHR21221 4 153 5.1E-31 T 23-04-2016 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705|UniPathway: UPA00395 RD1_RS18985 be45a2704e19acdf3f341c86da467105 163 Pfam PF04115 Ureidoglycolate lyase 3 159 4.9E-50 T 23-04-2016 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705|UniPathway: UPA00395 RD1_RS18985 be45a2704e19acdf3f341c86da467105 163 Gene3D G3DSA:2.60.120.480 4 160 5.2E-53 T 23-04-2016 IPR024060 Ureidoglycolate lyase domain GO:0004848 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705|UniPathway: UPA00395 RD1_RS18985 be45a2704e19acdf3f341c86da467105 163 PIRSF PIRSF017306 3 155 2.9E-29 T 23-04-2016 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705|UniPathway: UPA00395 RD1_RS18985 be45a2704e19acdf3f341c86da467105 163 SUPERFAMILY SSF51182 4 159 2.98E-55 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS18985 be45a2704e19acdf3f341c86da467105 163 Hamap MF_00616 Ureidoglycolate lyase [allA]. 3 161 37.033 T 23-04-2016 IPR023525 Ureidoglycolate lyase, bacterial GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705|UniPathway: UPA00395 RD1_RS09980 dc3b4510d1895edcbddec903efd5268b 133 SUPERFAMILY SSF55021 2 66 7.55E-16 T 23-04-2016 RD1_RS09980 dc3b4510d1895edcbddec903efd5268b 133 Gene3D G3DSA:3.30.2130.10 1 130 1.3E-50 T 23-04-2016 RD1_RS09980 dc3b4510d1895edcbddec903efd5268b 133 SUPERFAMILY SSF55021 68 128 2.29E-18 T 23-04-2016 RD1_RS09980 dc3b4510d1895edcbddec903efd5268b 133 PANTHER PTHR39199 1 130 1.1E-41 T 23-04-2016 RD1_RS09980 dc3b4510d1895edcbddec903efd5268b 133 PANTHER PTHR39199:SF1 1 130 1.1E-41 T 23-04-2016 RD1_RS09980 dc3b4510d1895edcbddec903efd5268b 133 Pfam PF10000 ACT domain 2 70 9.5E-25 T 23-04-2016 IPR018717 Domain of unknown function DUF2241 RD1_RS17995 185c8b18956343158ac0d49af6431018 274 PANTHER PTHR10992 1 132 1.1E-24 T 23-04-2016 RD1_RS17995 185c8b18956343158ac0d49af6431018 274 PANTHER PTHR10992 164 272 1.1E-24 T 23-04-2016 RD1_RS17995 185c8b18956343158ac0d49af6431018 274 Gene3D G3DSA:3.40.50.1820 2 271 1.4E-56 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS17995 185c8b18956343158ac0d49af6431018 274 Pfam PF12697 Alpha/beta hydrolase family 24 265 1.1E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS17995 185c8b18956343158ac0d49af6431018 274 SUPERFAMILY SSF53474 3 266 9.89E-40 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS17925 44dbbad3bad591895e5d682de6942641 233 Pfam PF02390 Putative methyltransferase 60 224 8.7E-41 T 23-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RD1_RS17925 44dbbad3bad591895e5d682de6942641 233 SUPERFAMILY SSF53335 56 231 4.27E-33 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS17925 44dbbad3bad591895e5d682de6942641 233 Gene3D G3DSA:3.40.50.150 58 207 4.2E-12 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS17925 44dbbad3bad591895e5d682de6942641 233 PANTHER PTHR23417:SF14 49 233 2.4E-41 T 23-04-2016 RD1_RS17925 44dbbad3bad591895e5d682de6942641 233 PANTHER PTHR23417 49 233 2.4E-41 T 23-04-2016 RD1_RS17925 44dbbad3bad591895e5d682de6942641 233 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 59 232 1.7E-35 T 23-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RD1_RS17925 44dbbad3bad591895e5d682de6942641 233 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 13 233 27.736 T 23-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RD1_RS03295 ef81038121c16b6efd736fd0a728dabe 417 PANTHER PTHR11076 37 380 8.9E-113 T 23-04-2016 RD1_RS03295 ef81038121c16b6efd736fd0a728dabe 417 SUPERFAMILY SSF100879 273 380 1.0E-26 T 23-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS03295 ef81038121c16b6efd736fd0a728dabe 417 Hamap MF_01113 DNA polymerase IV [dinB]. 34 381 34.185 T 23-04-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS03295 ef81038121c16b6efd736fd0a728dabe 417 Gene3D G3DSA:1.10.150.20 199 269 9.4E-19 T 23-04-2016 RD1_RS03295 ef81038121c16b6efd736fd0a728dabe 417 Pfam PF11799 impB/mucB/samB family C-terminal domain 270 376 1.1E-16 T 23-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS03295 ef81038121c16b6efd736fd0a728dabe 417 SUPERFAMILY SSF56672 36 266 9.78E-80 T 23-04-2016 RD1_RS03295 ef81038121c16b6efd736fd0a728dabe 417 Gene3D G3DSA:3.30.1490.100 273 378 1.4E-31 T 23-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS03295 ef81038121c16b6efd736fd0a728dabe 417 Gene3D G3DSA:3.30.70.270 97 195 2.9E-27 T 23-04-2016 RD1_RS03295 ef81038121c16b6efd736fd0a728dabe 417 Pfam PF00817 impB/mucB/samB family 41 186 4.6E-47 T 23-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS07960 e560071ce7a5781c7369e9b2dafb1ee5 254 SUPERFAMILY SSF46785 15 87 3.97E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07960 e560071ce7a5781c7369e9b2dafb1ee5 254 SMART SM00866 106 242 6.9E-31 T 23-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RD1_RS07960 e560071ce7a5781c7369e9b2dafb1ee5 254 Gene3D G3DSA:3.40.1410.10 81 247 1.0E-41 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RD1_RS07960 e560071ce7a5781c7369e9b2dafb1ee5 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 2.1E-8 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS07960 e560071ce7a5781c7369e9b2dafb1ee5 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 2.1E-8 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS07960 e560071ce7a5781c7369e9b2dafb1ee5 254 Pfam PF07702 UTRA domain 107 241 6.8E-34 T 23-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RD1_RS07960 e560071ce7a5781c7369e9b2dafb1ee5 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 83 4.1E-16 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS07960 e560071ce7a5781c7369e9b2dafb1ee5 254 SMART SM00345 24 83 7.4E-16 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS07960 e560071ce7a5781c7369e9b2dafb1ee5 254 Gene3D G3DSA:1.10.10.10 15 80 7.0E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07960 e560071ce7a5781c7369e9b2dafb1ee5 254 PANTHER PTHR11751 135 158 4.0E-21 T 23-04-2016 RD1_RS07960 e560071ce7a5781c7369e9b2dafb1ee5 254 PANTHER PTHR11751 18 86 4.0E-21 T 23-04-2016 RD1_RS07960 e560071ce7a5781c7369e9b2dafb1ee5 254 SUPERFAMILY SSF64288 71 248 2.67E-42 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RD1_RS16755 40220b2a720835debaca6fc310b17628 260 Hamap MF_01265 Probable L-aspartate dehydrogenase [nadX]. 1 260 31.742 T 23-04-2016 IPR020626 L-aspartate dehydrogenase, prokaryotic GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21|UniPathway: UPA00253 RD1_RS16755 40220b2a720835debaca6fc310b17628 260 Gene3D G3DSA:3.40.50.720 1 111 3.0E-8 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS16755 40220b2a720835debaca6fc310b17628 260 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 7 113 8.7E-14 T 23-04-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 RD1_RS16755 40220b2a720835debaca6fc310b17628 260 PANTHER PTHR31873 1 251 5.6E-58 T 23-04-2016 RD1_RS16755 40220b2a720835debaca6fc310b17628 260 Gene3D G3DSA:3.30.360.10 117 230 9.7E-37 T 23-04-2016 RD1_RS16755 40220b2a720835debaca6fc310b17628 260 SUPERFAMILY SSF51735 1 146 1.46E-22 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS16755 40220b2a720835debaca6fc310b17628 260 SUPERFAMILY SSF55347 117 230 3.14E-31 T 23-04-2016 RD1_RS16755 40220b2a720835debaca6fc310b17628 260 Pfam PF01958 Domain of unknown function DUF108 161 248 8.0E-34 T 23-04-2016 IPR002811 Aspartate dehydrogenase GO:0006742|GO:0016491|GO:0019363|GO:0055114 KEGG: 00760+1.4.1.21|UniPathway: UPA00253 RD1_RS16755 40220b2a720835debaca6fc310b17628 260 PIRSF PIRSF005227 1 260 4.0E-72 T 23-04-2016 IPR011182 L-aspartate dehydrogenase GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21|UniPathway: UPA00253 RD1_RS15610 90874ee2e5642b42942c8db7882a43a8 299 PANTHER PTHR20861:SF2 9 283 5.9E-57 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS15610 90874ee2e5642b42942c8db7882a43a8 299 Pfam PF08544 GHMP kinases C terminal 210 278 8.4E-8 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain RD1_RS15610 90874ee2e5642b42942c8db7882a43a8 299 PIRSF PIRSF010376 7 295 7.4E-75 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS15610 90874ee2e5642b42942c8db7882a43a8 299 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 12 269 2.3E-42 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS15610 90874ee2e5642b42942c8db7882a43a8 299 Gene3D G3DSA:3.30.230.10 10 162 2.9E-39 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD1_RS15610 90874ee2e5642b42942c8db7882a43a8 299 SUPERFAMILY SSF54211 9 161 4.02E-27 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS15610 90874ee2e5642b42942c8db7882a43a8 299 SUPERFAMILY SSF55060 165 285 2.45E-26 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain RD1_RS15610 90874ee2e5642b42942c8db7882a43a8 299 PANTHER PTHR20861 9 283 5.9E-57 T 23-04-2016 RD1_RS15610 90874ee2e5642b42942c8db7882a43a8 299 Gene3D G3DSA:3.30.70.890 166 286 4.3E-28 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain RD1_RS15610 90874ee2e5642b42942c8db7882a43a8 299 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 9 287 28.417 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS05045 9e01292816021d329fa326da083743fc 384 SUPERFAMILY SSF161098 171 369 6.02E-26 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS05045 9e01292816021d329fa326da083743fc 384 PANTHER PTHR30465:SF33 25 137 3.8E-141 T 23-04-2016 RD1_RS05045 9e01292816021d329fa326da083743fc 384 PANTHER PTHR30465:SF33 159 384 3.8E-141 T 23-04-2016 RD1_RS05045 9e01292816021d329fa326da083743fc 384 Gene3D G3DSA:1.10.3720.10 166 381 3.8E-25 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS05045 9e01292816021d329fa326da083743fc 384 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 34 84 1.9E-8 T 23-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RD1_RS05045 9e01292816021d329fa326da083743fc 384 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 194 381 1.5E-31 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS05045 9e01292816021d329fa326da083743fc 384 PANTHER PTHR30465 25 137 3.8E-141 T 23-04-2016 RD1_RS05045 9e01292816021d329fa326da083743fc 384 PANTHER PTHR30465 159 384 3.8E-141 T 23-04-2016 RD1_RS12315 ec6e7293c0b88a646fdf1cdca2ecbc8b 160 SUPERFAMILY SSF49503 49 148 5.0E-26 T 23-04-2016 IPR008972 Cupredoxin RD1_RS12315 ec6e7293c0b88a646fdf1cdca2ecbc8b 160 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 51 124 1.1E-11 T 23-04-2016 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 RD1_RS12315 ec6e7293c0b88a646fdf1cdca2ecbc8b 160 TIGRFAM TIGR02375 pseudoazurin: pseudoazurin 37 152 7.9E-35 T 23-04-2016 IPR012745 Pseudoazurin GO:0005507 RD1_RS12315 ec6e7293c0b88a646fdf1cdca2ecbc8b 160 PRINTS PR00155 Amicyanin family signature 92 107 4.2E-21 T 23-04-2016 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 RD1_RS12315 ec6e7293c0b88a646fdf1cdca2ecbc8b 160 PRINTS PR00155 Amicyanin family signature 108 123 4.2E-21 T 23-04-2016 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 RD1_RS12315 ec6e7293c0b88a646fdf1cdca2ecbc8b 160 PRINTS PR00155 Amicyanin family signature 51 70 4.2E-21 T 23-04-2016 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 RD1_RS12315 ec6e7293c0b88a646fdf1cdca2ecbc8b 160 PRINTS PR00155 Amicyanin family signature 71 86 4.2E-21 T 23-04-2016 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 RD1_RS12315 ec6e7293c0b88a646fdf1cdca2ecbc8b 160 PANTHER PTHR34192 51 127 1.6E-14 T 23-04-2016 RD1_RS12315 ec6e7293c0b88a646fdf1cdca2ecbc8b 160 PRINTS PR00156 Type I copper blue protein family signature 57 70 4.2E-12 T 23-04-2016 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 RD1_RS12315 ec6e7293c0b88a646fdf1cdca2ecbc8b 160 PRINTS PR00156 Type I copper blue protein family signature 71 86 4.2E-12 T 23-04-2016 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 RD1_RS12315 ec6e7293c0b88a646fdf1cdca2ecbc8b 160 PRINTS PR00156 Type I copper blue protein family signature 103 117 4.2E-12 T 23-04-2016 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 RD1_RS12315 ec6e7293c0b88a646fdf1cdca2ecbc8b 160 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 105 119 - T 23-04-2016 IPR028871 Blue (type 1) copper protein, binding site RD1_RS12315 ec6e7293c0b88a646fdf1cdca2ecbc8b 160 Gene3D G3DSA:2.60.40.420 32 155 8.0E-33 T 23-04-2016 IPR008972 Cupredoxin RD1_RS10395 f9eec91607307bd3d15e4e7bc866a540 348 Pfam PF00586 AIR synthase related protein, N-terminal domain 54 156 3.7E-15 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RD1_RS10395 f9eec91607307bd3d15e4e7bc866a540 348 PANTHER PTHR10520 5 343 5.7E-200 T 23-04-2016 RD1_RS10395 f9eec91607307bd3d15e4e7bc866a540 348 Pfam PF02769 AIR synthase related protein, C-terminal domain 178 341 4.7E-40 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RD1_RS10395 f9eec91607307bd3d15e4e7bc866a540 348 SUPERFAMILY SSF55326 8 170 2.99E-47 T 23-04-2016 RD1_RS10395 f9eec91607307bd3d15e4e7bc866a540 348 Gene3D G3DSA:3.90.650.10 174 341 3.6E-69 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RD1_RS10395 f9eec91607307bd3d15e4e7bc866a540 348 Gene3D G3DSA:3.30.1330.10 23 170 2.3E-59 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RD1_RS10395 f9eec91607307bd3d15e4e7bc866a540 348 SUPERFAMILY SSF56042 174 342 7.03E-61 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RD1_RS10395 f9eec91607307bd3d15e4e7bc866a540 348 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 8 337 4.4E-129 T 23-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS10395 f9eec91607307bd3d15e4e7bc866a540 348 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 8 346 44.021 T 23-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS13800 8624f8d9cf9d0dcf582079602dbf1882 153 SUPERFAMILY SSF52833 1 153 3.06E-52 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS13800 8624f8d9cf9d0dcf582079602dbf1882 153 PIRSF PIRSF000239 1 153 8.5E-23 T 23-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 RD1_RS13800 8624f8d9cf9d0dcf582079602dbf1882 153 PANTHER PTHR10681 1 153 5.0E-50 T 23-04-2016 RD1_RS13800 8624f8d9cf9d0dcf582079602dbf1882 153 Pfam PF00578 AhpC/TSA family 4 132 3.6E-38 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 RD1_RS13800 8624f8d9cf9d0dcf582079602dbf1882 153 Gene3D G3DSA:3.40.30.10 1 153 4.9E-52 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS11605 ee2f1700b286c90acb085d114826ab47 154 SUPERFAMILY SSF50814 24 152 3.52E-8 T 23-04-2016 IPR011038 Calycin-like RD1_RS06040 f991abfac997760f39c13859bc24840d 262 PANTHER PTHR32125 36 259 1.2E-93 T 23-04-2016 RD1_RS06040 f991abfac997760f39c13859bc24840d 262 PIRSF PIRSF000386 32 262 1.0E-89 T 23-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RD1_RS06040 f991abfac997760f39c13859bc24840d 262 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 35 257 1.9E-75 T 23-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RD1_RS06040 f991abfac997760f39c13859bc24840d 262 Gene3D G3DSA:3.40.1280.10 32 191 1.0E-65 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RD1_RS06040 f991abfac997760f39c13859bc24840d 262 SUPERFAMILY SSF75217 32 257 1.64E-93 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases RD1_RS06040 f991abfac997760f39c13859bc24840d 262 Gene3D G3DSA:1.10.1270.20 192 257 1.3E-29 T 23-04-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RD1_RS06040 f991abfac997760f39c13859bc24840d 262 PANTHER PTHR32125:SF1 36 259 1.2E-93 T 23-04-2016 RD1_RS06040 f991abfac997760f39c13859bc24840d 262 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 262 105.949 T 23-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RD1_RS06040 f991abfac997760f39c13859bc24840d 262 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 54 252 3.5E-53 T 23-04-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RD1_RS09135 d1c275ed6d937628e6fb7dce5fbc2d5b 627 PANTHER PTHR24096 4 610 7.1E-144 T 23-04-2016 RD1_RS09135 d1c275ed6d937628e6fb7dce5fbc2d5b 627 SUPERFAMILY SSF56801 12 567 1.57E-123 T 23-04-2016 RD1_RS09135 d1c275ed6d937628e6fb7dce5fbc2d5b 627 Gene3D G3DSA:3.40.50.980 26 223 2.5E-28 T 23-04-2016 RD1_RS09135 d1c275ed6d937628e6fb7dce5fbc2d5b 627 ProSitePatterns PS00455 Putative AMP-binding domain signature. 220 231 - T 23-04-2016 IPR020845 AMP-binding, conserved site RD1_RS09135 d1c275ed6d937628e6fb7dce5fbc2d5b 627 Gene3D G3DSA:3.30.300.30 467 566 1.3E-26 T 23-04-2016 RD1_RS09135 d1c275ed6d937628e6fb7dce5fbc2d5b 627 Gene3D G3DSA:2.30.38.10 388 466 3.1E-15 T 23-04-2016 RD1_RS09135 d1c275ed6d937628e6fb7dce5fbc2d5b 627 PANTHER PTHR24096:SF170 4 610 7.1E-144 T 23-04-2016 RD1_RS09135 d1c275ed6d937628e6fb7dce5fbc2d5b 627 Gene3D G3DSA:3.40.50.980 224 387 2.2E-32 T 23-04-2016 RD1_RS09135 d1c275ed6d937628e6fb7dce5fbc2d5b 627 Pfam PF13193 AMP-binding enzyme C-terminal domain 481 557 7.7E-15 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RD1_RS09135 d1c275ed6d937628e6fb7dce5fbc2d5b 627 Pfam PF00501 AMP-binding enzyme 33 472 4.5E-80 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RD1_RS04005 66d91da6cab5e03274fb8d1aeb3e2693 301 PANTHER PTHR33608:SF6 36 231 1.5E-34 T 23-04-2016 RD1_RS04005 66d91da6cab5e03274fb8d1aeb3e2693 301 PANTHER PTHR33608 36 231 1.5E-34 T 23-04-2016 RD1_RS04005 66d91da6cab5e03274fb8d1aeb3e2693 301 Pfam PF01882 Protein of unknown function DUF58 48 133 1.8E-16 T 23-04-2016 IPR002881 Domain of unknown function DUF58 RD1_RS04430 3f7a6dd0db9dbb5715da942bd544dc21 160 ProSitePatterns PS00893 Nudix box signature. 44 65 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RD1_RS04430 3f7a6dd0db9dbb5715da942bd544dc21 160 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 5 160 34.168 T 23-04-2016 IPR022927 RNA pyrophosphohydrolase RppH RD1_RS04430 3f7a6dd0db9dbb5715da942bd544dc21 160 PANTHER PTHR11839 11 160 7.1E-45 T 23-04-2016 RD1_RS04430 3f7a6dd0db9dbb5715da942bd544dc21 160 SUPERFAMILY SSF55811 6 158 2.17E-34 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS04430 3f7a6dd0db9dbb5715da942bd544dc21 160 PANTHER PTHR11839:SF13 11 160 7.1E-45 T 23-04-2016 RD1_RS04430 3f7a6dd0db9dbb5715da942bd544dc21 160 PRINTS PR00502 NUDIX hydrolase family signature 39 53 1.1E-6 T 23-04-2016 IPR020476 NUDIX hydrolase RD1_RS04430 3f7a6dd0db9dbb5715da942bd544dc21 160 PRINTS PR00502 NUDIX hydrolase family signature 53 68 1.1E-6 T 23-04-2016 IPR020476 NUDIX hydrolase RD1_RS04430 3f7a6dd0db9dbb5715da942bd544dc21 160 Gene3D G3DSA:3.90.79.10 7 156 2.6E-35 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS04430 3f7a6dd0db9dbb5715da942bd544dc21 160 Pfam PF00293 NUDIX domain 11 149 5.2E-31 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RD1_RS04285 babbca20620081dd6d311bb2bf6106cb 126 Pfam PF01230 HIT domain 16 117 9.2E-24 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RD1_RS04285 babbca20620081dd6d311bb2bf6106cb 126 Gene3D G3DSA:3.30.428.10 3 119 5.9E-31 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 RD1_RS04285 babbca20620081dd6d311bb2bf6106cb 126 SUPERFAMILY SSF54197 5 119 1.53E-29 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 RD1_RS04285 babbca20620081dd6d311bb2bf6106cb 126 PRINTS PR00332 Histidine triad family signature 31 49 3.6E-18 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RD1_RS04285 babbca20620081dd6d311bb2bf6106cb 126 PRINTS PR00332 Histidine triad family signature 103 113 3.6E-18 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RD1_RS04285 babbca20620081dd6d311bb2bf6106cb 126 PRINTS PR00332 Histidine triad family signature 10 26 3.6E-18 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RD1_RS04285 babbca20620081dd6d311bb2bf6106cb 126 PANTHER PTHR23089 5 119 6.2E-33 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RD1_RS04285 babbca20620081dd6d311bb2bf6106cb 126 ProSitePatterns PS00892 HIT domain signature. 96 114 - T 23-04-2016 IPR019808 Histidine triad, conserved site RD1_RS04860 a8fd77cb1726c83b9c04c49bf3170eee 273 PANTHER PTHR30043 1 272 2.5E-58 T 23-04-2016 RD1_RS04860 a8fd77cb1726c83b9c04c49bf3170eee 273 PANTHER PTHR30043:SF1 1 272 2.5E-58 T 23-04-2016 RD1_RS04860 a8fd77cb1726c83b9c04c49bf3170eee 273 Gene3D G3DSA:1.10.3720.10 77 272 3.7E-29 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04860 a8fd77cb1726c83b9c04c49bf3170eee 273 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 24 272 5.1E-80 T 23-04-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 RD1_RS04860 a8fd77cb1726c83b9c04c49bf3170eee 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 271 2.7E-12 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04860 a8fd77cb1726c83b9c04c49bf3170eee 273 SUPERFAMILY SSF161098 77 264 1.44E-31 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10685 6dcd8ff74fd2c0ec4366d2fdf9738748 437 TIGRFAM TIGR03356 BGL: beta-galactosidase 8 429 2.5E-163 T 23-04-2016 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7089|MetaCyc: PWY-7091|MetaCyc: PWY-7092 RD1_RS10685 6dcd8ff74fd2c0ec4366d2fdf9738748 437 PANTHER PTHR10353 2 437 2.6E-160 T 23-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RD1_RS10685 6dcd8ff74fd2c0ec4366d2fdf9738748 437 PRINTS PR00131 Glycosyl hydrolase family 1 signature 347 355 9.2E-21 T 23-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RD1_RS10685 6dcd8ff74fd2c0ec4366d2fdf9738748 437 PRINTS PR00131 Glycosyl hydrolase family 1 signature 364 375 9.2E-21 T 23-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RD1_RS10685 6dcd8ff74fd2c0ec4366d2fdf9738748 437 PRINTS PR00131 Glycosyl hydrolase family 1 signature 285 299 9.2E-21 T 23-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RD1_RS10685 6dcd8ff74fd2c0ec4366d2fdf9738748 437 PRINTS PR00131 Glycosyl hydrolase family 1 signature 385 402 9.2E-21 T 23-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RD1_RS10685 6dcd8ff74fd2c0ec4366d2fdf9738748 437 PRINTS PR00131 Glycosyl hydrolase family 1 signature 409 421 9.2E-21 T 23-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RD1_RS10685 6dcd8ff74fd2c0ec4366d2fdf9738748 437 SUPERFAMILY SSF51445 7 433 1.09E-140 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RD1_RS10685 6dcd8ff74fd2c0ec4366d2fdf9738748 437 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 347 355 - T 23-04-2016 IPR018120 Glycoside hydrolase family 1, active site RD1_RS10685 6dcd8ff74fd2c0ec4366d2fdf9738748 437 Gene3D G3DSA:3.20.20.80 2 433 3.4E-136 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RD1_RS10685 6dcd8ff74fd2c0ec4366d2fdf9738748 437 PANTHER PTHR10353:SF36 2 437 2.6E-160 T 23-04-2016 RD1_RS10685 6dcd8ff74fd2c0ec4366d2fdf9738748 437 Pfam PF00232 Glycosyl hydrolase family 1 6 428 2.1E-132 T 23-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RD1_RS07990 471e89b40e481eee77891da7d29ceca0 332 SMART SM00382 28 211 5.3E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS07990 471e89b40e481eee77891da7d29ceca0 332 Gene3D G3DSA:3.40.50.300 2 234 1.1E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07990 471e89b40e481eee77891da7d29ceca0 332 Pfam PF00005 ABC transporter 19 161 7.1E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS07990 471e89b40e481eee77891da7d29ceca0 332 Pfam PF08402 TOBE domain 255 322 1.6E-13 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS07990 471e89b40e481eee77891da7d29ceca0 332 SUPERFAMILY SSF50331 236 331 9.48E-20 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS07990 471e89b40e481eee77891da7d29ceca0 332 SUPERFAMILY SSF52540 4 242 4.76E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07990 471e89b40e481eee77891da7d29ceca0 332 PANTHER PTHR24220:SF151 5 304 6.1E-146 T 23-04-2016 RD1_RS07990 471e89b40e481eee77891da7d29ceca0 332 Gene3D G3DSA:2.40.50.140 258 316 1.6E-13 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS07990 471e89b40e481eee77891da7d29ceca0 332 PANTHER PTHR24220 5 304 6.1E-146 T 23-04-2016 RD1_RS07990 471e89b40e481eee77891da7d29ceca0 332 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS09050 2e76e544aa1ed492e050b0ae753510fb 375 PANTHER PTHR21152 24 374 5.5E-59 T 23-04-2016 RD1_RS09050 2e76e544aa1ed492e050b0ae753510fb 375 PANTHER PTHR21152:SF21 24 374 5.5E-59 T 23-04-2016 RD1_RS09050 2e76e544aa1ed492e050b0ae753510fb 375 Pfam PF00266 Aminotransferase class-V 22 297 1.1E-13 T 23-04-2016 IPR000192 Aminotransferase class V domain RD1_RS09050 2e76e544aa1ed492e050b0ae753510fb 375 PIRSF PIRSF000524 15 375 3.0E-40 T 23-04-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RD1_RS09050 2e76e544aa1ed492e050b0ae753510fb 375 Gene3D G3DSA:3.90.1150.10 267 373 4.4E-6 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS09050 2e76e544aa1ed492e050b0ae753510fb 375 SUPERFAMILY SSF53383 16 372 7.88E-71 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS09050 2e76e544aa1ed492e050b0ae753510fb 375 Gene3D G3DSA:3.40.640.10 21 265 1.2E-46 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS00675 bec2e7fdd7e01d967b35cea959452e1d 176 Pfam PF00293 NUDIX domain 27 158 1.5E-22 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RD1_RS00675 bec2e7fdd7e01d967b35cea959452e1d 176 TIGRFAM TIGR02150 IPP_isom_1: isopentenyl-diphosphate delta-isomerase 15 161 6.8E-33 T 23-04-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 RD1_RS00675 bec2e7fdd7e01d967b35cea959452e1d 176 PANTHER PTHR10885 24 165 2.1E-25 T 23-04-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 RD1_RS00675 bec2e7fdd7e01d967b35cea959452e1d 176 Gene3D G3DSA:3.90.79.10 14 165 5.4E-40 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS00675 bec2e7fdd7e01d967b35cea959452e1d 176 Hamap MF_00202 Isopentenyl-diphosphate Delta-isomerase [idi]. 1 173 31.076 T 23-04-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 RD1_RS00675 bec2e7fdd7e01d967b35cea959452e1d 176 PIRSF PIRSF018427 1 175 1.9E-44 T 23-04-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 RD1_RS00675 bec2e7fdd7e01d967b35cea959452e1d 176 SUPERFAMILY SSF55811 11 167 3.38E-41 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS10880 da0a78e24c3caa508c25479e0250954b 361 Pfam PF00005 ABC transporter 22 163 5.8E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS10880 da0a78e24c3caa508c25479e0250954b 361 Gene3D G3DSA:3.40.50.300 2 235 7.9E-78 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10880 da0a78e24c3caa508c25479e0250954b 361 Pfam PF08402 TOBE domain 287 358 3.9E-7 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS10880 da0a78e24c3caa508c25479e0250954b 361 PANTHER PTHR24220:SF150 7 246 4.6E-118 T 23-04-2016 RD1_RS10880 da0a78e24c3caa508c25479e0250954b 361 PANTHER PTHR24220 7 246 4.6E-118 T 23-04-2016 RD1_RS10880 da0a78e24c3caa508c25479e0250954b 361 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS10880 da0a78e24c3caa508c25479e0250954b 361 SUPERFAMILY SSF52540 6 244 2.05E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10880 da0a78e24c3caa508c25479e0250954b 361 SUPERFAMILY SSF50331 239 358 6.56E-15 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS10880 da0a78e24c3caa508c25479e0250954b 361 SMART SM00382 30 213 2.7E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 SUPERFAMILY SSF51735 1 126 4.6E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 PANTHER PTHR11117 1 293 1.5E-148 T 23-04-2016 RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 SMART SM00881 4 100 2.7E-34 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 Pfam PF00549 CoA-ligase 157 274 1.5E-13 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 2.0E-29 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 PRINTS PR01798 Succinyl-CoA synthase signature 181 199 2.0E-29 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 PRINTS PR01798 Succinyl-CoA synthase signature 212 225 2.0E-29 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 PRINTS PR01798 Succinyl-CoA synthase signature 244 261 2.0E-29 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 Gene3D G3DSA:3.40.50.720 2 123 3.5E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 291 2.8E-125 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 240 253 - T 23-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 Pfam PF02629 CoA binding domain 6 99 6.9E-28 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 PANTHER PTHR11117:SF2 1 293 1.5E-148 T 23-04-2016 RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 Gene3D G3DSA:3.40.50.261 124 292 3.0E-64 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 SUPERFAMILY SSF52210 127 291 3.4E-48 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS05350 8ab2b4f5e473785c9a36e785ce0e3ec5 295 PIRSF PIRSF001553 1 295 4.2E-122 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS11815 6ea1ec6ccc86d87650719b9ad1bd7960 405 Pfam PF02566 OsmC-like protein 299 399 3.8E-18 T 23-04-2016 IPR003718 OsmC/Ohr family RD1_RS11815 6ea1ec6ccc86d87650719b9ad1bd7960 405 SUPERFAMILY SSF82784 228 402 1.44E-39 T 23-04-2016 IPR003718 OsmC/Ohr family RD1_RS11815 6ea1ec6ccc86d87650719b9ad1bd7960 405 Gene3D G3DSA:3.40.50.1820 180 251 2.2E-39 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS11815 6ea1ec6ccc86d87650719b9ad1bd7960 405 Gene3D G3DSA:3.40.50.1820 1 136 2.2E-39 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS11815 6ea1ec6ccc86d87650719b9ad1bd7960 405 PANTHER PTHR11614 1 272 1.3E-89 T 23-04-2016 RD1_RS11815 6ea1ec6ccc86d87650719b9ad1bd7960 405 Gene3D G3DSA:3.30.300.20 257 403 1.8E-42 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RD1_RS11815 6ea1ec6ccc86d87650719b9ad1bd7960 405 Pfam PF12146 Serine aminopeptidase, S33 48 150 1.3E-13 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 RD1_RS11815 6ea1ec6ccc86d87650719b9ad1bd7960 405 PANTHER PTHR11614:SF108 1 272 1.3E-89 T 23-04-2016 RD1_RS11815 6ea1ec6ccc86d87650719b9ad1bd7960 405 SUPERFAMILY SSF53474 1 138 4.19E-45 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS11815 6ea1ec6ccc86d87650719b9ad1bd7960 405 SUPERFAMILY SSF53474 182 251 4.19E-45 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS19020 9b8a01f315f905c4817f123ea5f74c54 269 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 151 179 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS19020 9b8a01f315f905c4817f123ea5f74c54 269 PANTHER PTHR24322 164 196 6.8E-53 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19020 9b8a01f315f905c4817f123ea5f74c54 269 PANTHER PTHR24322 23 148 6.8E-53 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19020 9b8a01f315f905c4817f123ea5f74c54 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 1.4E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19020 9b8a01f315f905c4817f123ea5f74c54 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 20 37 1.4E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19020 9b8a01f315f905c4817f123ea5f74c54 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 154 1.4E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19020 9b8a01f315f905c4817f123ea5f74c54 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 1.4E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19020 9b8a01f315f905c4817f123ea5f74c54 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 229 249 1.4E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19020 9b8a01f315f905c4817f123ea5f74c54 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 1.4E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19020 9b8a01f315f905c4817f123ea5f74c54 269 Gene3D G3DSA:3.40.50.720 16 263 2.6E-76 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19020 9b8a01f315f905c4817f123ea5f74c54 269 SUPERFAMILY SSF51735 18 263 2.75E-76 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19020 9b8a01f315f905c4817f123ea5f74c54 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 6.4E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19020 9b8a01f315f905c4817f123ea5f74c54 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 6.4E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19020 9b8a01f315f905c4817f123ea5f74c54 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 6.4E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19020 9b8a01f315f905c4817f123ea5f74c54 269 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 27 263 7.4E-60 T 23-04-2016 RD1_RS09305 8732c44059d1d1b2bb632efd1e46ab18 270 PANTHER PTHR36303 2 270 7.8E-117 T 23-04-2016 RD1_RS09305 8732c44059d1d1b2bb632efd1e46ab18 270 SUPERFAMILY SSF56300 1 260 3.69E-80 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS09305 8732c44059d1d1b2bb632efd1e46ab18 270 Pfam PF13277 YmdB-like protein 4 258 1.8E-99 T 23-04-2016 IPR005235 Metallophosphoesterase, YmdB-like RD1_RS09305 8732c44059d1d1b2bb632efd1e46ab18 270 Gene3D G3DSA:3.60.21.30 1 260 4.5E-108 T 23-04-2016 RD1_RS09305 8732c44059d1d1b2bb632efd1e46ab18 270 PANTHER PTHR36303:SF1 2 270 7.8E-117 T 23-04-2016 RD1_RS09305 8732c44059d1d1b2bb632efd1e46ab18 270 PIRSF PIRSF004789 1 265 4.4E-89 T 23-04-2016 IPR005235 Metallophosphoesterase, YmdB-like RD1_RS09305 8732c44059d1d1b2bb632efd1e46ab18 270 TIGRFAM TIGR00282 TIGR00282: metallophosphoesterase, MG_246/BB_0505 family 1 260 4.5E-78 T 23-04-2016 IPR005235 Metallophosphoesterase, YmdB-like RD1_RS14335 5a80be62f23480989cca5873f3552289 375 PANTHER PTHR33529 1 364 1.4E-47 T 23-04-2016 RD1_RS14335 5a80be62f23480989cca5873f3552289 375 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 358 1.6E-57 T 23-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 RD1_RS14335 5a80be62f23480989cca5873f3552289 375 PANTHER PTHR33529:SF2 1 364 1.4E-47 T 23-04-2016 RD1_RS14335 5a80be62f23480989cca5873f3552289 375 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 4 358 8.3E-90 T 23-04-2016 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 RD1_RS05545 a26ebce6fb018e8a555a94e2993487e0 671 Gene3D G3DSA:1.10.1370.10 496 669 2.8E-109 T 23-04-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RD1_RS05545 a26ebce6fb018e8a555a94e2993487e0 671 Gene3D G3DSA:1.10.1370.10 144 348 2.8E-109 T 23-04-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RD1_RS05545 a26ebce6fb018e8a555a94e2993487e0 671 Pfam PF01432 Peptidase family M3 226 667 7.1E-109 T 23-04-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 RD1_RS05545 a26ebce6fb018e8a555a94e2993487e0 671 Gene3D G3DSA:1.20.1050.40 10 143 3.3E-19 T 23-04-2016 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal RD1_RS05545 a26ebce6fb018e8a555a94e2993487e0 671 PANTHER PTHR11804:SF47 2 669 9.7E-285 T 23-04-2016 RD1_RS05545 a26ebce6fb018e8a555a94e2993487e0 671 Gene3D G3DSA:3.40.390.10 358 495 3.7E-45 T 23-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 RD1_RS05545 a26ebce6fb018e8a555a94e2993487e0 671 PANTHER PTHR11804 2 669 9.7E-285 T 23-04-2016 RD1_RS05545 a26ebce6fb018e8a555a94e2993487e0 671 SUPERFAMILY SSF55486 1 667 1.78E-178 T 23-04-2016 RD1_RS10740 b3571f5c4d5846db20b1d75ca2cc6abb 640 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 12 69 1.0E-15 T 23-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 RD1_RS10740 b3571f5c4d5846db20b1d75ca2cc6abb 640 Gene3D G3DSA:3.40.50.980 67 253 5.5E-42 T 23-04-2016 RD1_RS10740 b3571f5c4d5846db20b1d75ca2cc6abb 640 ProSitePatterns PS00455 Putative AMP-binding domain signature. 248 259 - T 23-04-2016 IPR020845 AMP-binding, conserved site RD1_RS10740 b3571f5c4d5846db20b1d75ca2cc6abb 640 SUPERFAMILY SSF56801 6 631 2.35E-173 T 23-04-2016 RD1_RS10740 b3571f5c4d5846db20b1d75ca2cc6abb 640 PANTHER PTHR24095 10 633 0.0 T 23-04-2016 RD1_RS10740 b3571f5c4d5846db20b1d75ca2cc6abb 640 Gene3D G3DSA:2.30.38.10 427 504 2.7E-6 T 23-04-2016 RD1_RS10740 b3571f5c4d5846db20b1d75ca2cc6abb 640 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 1 634 49.808 T 23-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 RD1_RS10740 b3571f5c4d5846db20b1d75ca2cc6abb 640 PANTHER PTHR24095:SF116 10 633 0.0 T 23-04-2016 RD1_RS10740 b3571f5c4d5846db20b1d75ca2cc6abb 640 Gene3D G3DSA:3.40.50.980 254 416 7.3E-30 T 23-04-2016 RD1_RS10740 b3571f5c4d5846db20b1d75ca2cc6abb 640 Pfam PF13193 AMP-binding enzyme C-terminal domain 520 598 9.2E-24 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RD1_RS10740 b3571f5c4d5846db20b1d75ca2cc6abb 640 Pfam PF00501 AMP-binding enzyme 71 511 4.0E-91 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RD1_RS10740 b3571f5c4d5846db20b1d75ca2cc6abb 640 Gene3D G3DSA:3.30.300.30 507 620 4.3E-26 T 23-04-2016 RD1_RS10740 b3571f5c4d5846db20b1d75ca2cc6abb 640 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 8 632 1.1E-302 T 23-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 RD1_RS13665 4f3be78e000753fe91b9edeeaa1c1252 181 SUPERFAMILY SSF54364 15 89 1.7E-28 T 23-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RD1_RS13665 4f3be78e000753fe91b9edeeaa1c1252 181 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 11 181 30.612 T 23-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RD1_RS13665 4f3be78e000753fe91b9edeeaa1c1252 181 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 18 179 1.7E-68 T 23-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RD1_RS13665 4f3be78e000753fe91b9edeeaa1c1252 181 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 94 178 8.2E-38 T 23-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RD1_RS13665 4f3be78e000753fe91b9edeeaa1c1252 181 ProSitePatterns PS00938 Initiation factor 3 signature. 69 82 - T 23-04-2016 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 RD1_RS13665 4f3be78e000753fe91b9edeeaa1c1252 181 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 18 87 3.0E-30 T 23-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RD1_RS13665 4f3be78e000753fe91b9edeeaa1c1252 181 Gene3D G3DSA:3.10.20.80 14 89 3.3E-35 T 23-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RD1_RS13665 4f3be78e000753fe91b9edeeaa1c1252 181 SUPERFAMILY SSF55200 93 179 3.27E-34 T 23-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RD1_RS13665 4f3be78e000753fe91b9edeeaa1c1252 181 PANTHER PTHR10938 12 179 4.2E-67 T 23-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RD1_RS13665 4f3be78e000753fe91b9edeeaa1c1252 181 Gene3D G3DSA:3.30.110.10 90 179 5.2E-40 T 23-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RD1_RS05490 2ad6652cdd1a7ce522ad69cc4cfac27e 129 Gene3D G3DSA:3.40.1350.10 24 126 2.8E-24 T 23-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 RD1_RS05490 2ad6652cdd1a7ce522ad69cc4cfac27e 129 Hamap MF_00048 UPF0102 protein YraN [yraN]. 17 126 15.685 T 23-04-2016 IPR003509 Uncharacterised protein family UPF0102 RD1_RS05490 2ad6652cdd1a7ce522ad69cc4cfac27e 129 PANTHER PTHR34039:SF1 13 129 2.2E-19 T 23-04-2016 RD1_RS05490 2ad6652cdd1a7ce522ad69cc4cfac27e 129 PANTHER PTHR34039 13 129 2.2E-19 T 23-04-2016 RD1_RS05490 2ad6652cdd1a7ce522ad69cc4cfac27e 129 Pfam PF02021 Uncharacterised protein family UPF0102 24 113 1.1E-15 T 23-04-2016 IPR003509 Uncharacterised protein family UPF0102 RD1_RS05490 2ad6652cdd1a7ce522ad69cc4cfac27e 129 SUPERFAMILY SSF52980 18 125 1.07E-15 T 23-04-2016 IPR011335 Restriction endonuclease type II-like RD1_RS03090 401e0d6c0bc579ebeb38bc1b5a80d58a 295 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 168 288 5.7E-15 T 23-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RD1_RS03090 401e0d6c0bc579ebeb38bc1b5a80d58a 295 SUPERFAMILY SSF48179 167 289 5.21E-25 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS03090 401e0d6c0bc579ebeb38bc1b5a80d58a 295 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 8 21 - T 23-04-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 RD1_RS03090 401e0d6c0bc579ebeb38bc1b5a80d58a 295 SUPERFAMILY SSF51735 5 165 1.16E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03090 401e0d6c0bc579ebeb38bc1b5a80d58a 295 PANTHER PTHR22981 2 279 2.6E-61 T 23-04-2016 RD1_RS03090 401e0d6c0bc579ebeb38bc1b5a80d58a 295 PIRSF PIRSF000103 1 294 2.5E-64 T 23-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 RD1_RS03090 401e0d6c0bc579ebeb38bc1b5a80d58a 295 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 165 4.8E-37 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 RD1_RS03090 401e0d6c0bc579ebeb38bc1b5a80d58a 295 Gene3D G3DSA:1.10.1040.10 170 290 5.1E-22 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS03090 401e0d6c0bc579ebeb38bc1b5a80d58a 295 Gene3D G3DSA:3.40.50.720 1 169 3.1E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS04610 b7369ee5a5f020f8ffe20ec3677207e0 318 PIRSF PIRSF015582 4 318 4.5E-85 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like RD1_RS04610 b7369ee5a5f020f8ffe20ec3677207e0 318 SUPERFAMILY SSF51621 12 264 1.92E-64 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS04610 b7369ee5a5f020f8ffe20ec3677207e0 318 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 15 253 1.2E-45 T 23-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 RD1_RS04610 b7369ee5a5f020f8ffe20ec3677207e0 318 PANTHER PTHR32308:SF2 10 184 1.8E-80 T 23-04-2016 RD1_RS04610 b7369ee5a5f020f8ffe20ec3677207e0 318 PANTHER PTHR32308:SF2 200 317 1.8E-80 T 23-04-2016 RD1_RS04610 b7369ee5a5f020f8ffe20ec3677207e0 318 Gene3D G3DSA:3.20.20.60 10 264 7.4E-78 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS04610 b7369ee5a5f020f8ffe20ec3677207e0 318 PANTHER PTHR32308 10 184 1.8E-80 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like RD1_RS04610 b7369ee5a5f020f8ffe20ec3677207e0 318 PANTHER PTHR32308 200 317 1.8E-80 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like RD1_RS07805 43ae62dda2df1106bcf623860d8922c9 65 PANTHER PTHR36150:SF1 1 55 5.1E-12 T 23-04-2016 RD1_RS07805 43ae62dda2df1106bcf623860d8922c9 65 Gene3D G3DSA:3.30.50.10 1 50 6.9E-19 T 23-04-2016 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 RD1_RS07805 43ae62dda2df1106bcf623860d8922c9 65 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 1 50 13.23 T 23-04-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 RD1_RS07805 43ae62dda2df1106bcf623860d8922c9 65 Pfam PF03884 Domain of unknown function (DUF329) 1 45 1.3E-14 T 23-04-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 RD1_RS07805 43ae62dda2df1106bcf623860d8922c9 65 SUPERFAMILY SSF57716 1 49 7.84E-14 T 23-04-2016 RD1_RS07805 43ae62dda2df1106bcf623860d8922c9 65 PANTHER PTHR36150 1 55 5.1E-12 T 23-04-2016 RD1_RS14190 d95219fd7e0f3aa971d10eb595155757 370 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 14 360 1.5E-103 T 23-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RD1_RS14190 d95219fd7e0f3aa971d10eb595155757 370 PIRSF PIRSF001455 23 369 1.3E-95 T 23-04-2016 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RD1_RS14190 d95219fd7e0f3aa971d10eb595155757 370 Gene3D G3DSA:1.20.1090.10 175 364 2.6E-60 T 23-04-2016 RD1_RS14190 d95219fd7e0f3aa971d10eb595155757 370 Gene3D G3DSA:3.40.50.1970 4 172 3.8E-62 T 23-04-2016 RD1_RS14190 d95219fd7e0f3aa971d10eb595155757 370 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 3 365 38.982 T 23-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RD1_RS14190 d95219fd7e0f3aa971d10eb595155757 370 PANTHER PTHR21090 1 368 3.2E-143 T 23-04-2016 RD1_RS14190 d95219fd7e0f3aa971d10eb595155757 370 SUPERFAMILY SSF56796 6 364 1.24E-104 T 23-04-2016 RD1_RS14190 d95219fd7e0f3aa971d10eb595155757 370 Pfam PF01761 3-dehydroquinate synthase 70 332 4.2E-94 T 23-04-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RD1_RS12825 88837df4442752a3b48fdcdc3074555f 279 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 29 175 1.1E-13 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RD1_RS12825 88837df4442752a3b48fdcdc3074555f 279 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 113 131 3.3E-5 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RD1_RS12825 88837df4442752a3b48fdcdc3074555f 279 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 29 47 3.3E-5 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RD1_RS12825 88837df4442752a3b48fdcdc3074555f 279 SUPERFAMILY SSF52540 6 233 9.29E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12825 88837df4442752a3b48fdcdc3074555f 279 SMART SM00382 25 183 7.9E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS12825 88837df4442752a3b48fdcdc3074555f 279 Gene3D G3DSA:3.40.50.300 7 197 6.8E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12825 88837df4442752a3b48fdcdc3074555f 279 PANTHER PTHR22908 1 233 5.3E-65 T 23-04-2016 RD1_RS02880 037ac14b2c1b9721add284557776f958 441 SUPERFAMILY SSF54862 22 118 5.44E-21 T 23-04-2016 RD1_RS02880 037ac14b2c1b9721add284557776f958 441 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 25 36 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS02880 037ac14b2c1b9721add284557776f958 441 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 76 87 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS02880 037ac14b2c1b9721add284557776f958 441 Pfam PF02754 Cysteine-rich domain 317 400 8.2E-14 T 23-04-2016 IPR004017 Cysteine-rich domain RD1_RS02880 037ac14b2c1b9721add284557776f958 441 Pfam PF02754 Cysteine-rich domain 185 271 1.3E-12 T 23-04-2016 IPR004017 Cysteine-rich domain RD1_RS02880 037ac14b2c1b9721add284557776f958 441 PANTHER PTHR32479 14 418 1.2E-129 T 23-04-2016 RD1_RS02880 037ac14b2c1b9721add284557776f958 441 PANTHER PTHR32479:SF2 14 418 1.2E-129 T 23-04-2016 RD1_RS02880 037ac14b2c1b9721add284557776f958 441 Gene3D G3DSA:1.10.1060.10 12 111 1.9E-22 T 23-04-2016 RD1_RS02880 037ac14b2c1b9721add284557776f958 441 Pfam PF12838 4Fe-4S dicluster domain 24 90 1.2E-11 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS02880 037ac14b2c1b9721add284557776f958 441 PIRSF PIRSF000139 5 423 8.0E-132 T 23-04-2016 IPR012257 Glycolate oxidase, iron-sulphur subunit RD1_RS15555 fa895b9430ead89799868e2df9cd2238 359 SUPERFAMILY SSF53383 24 355 4.35E-75 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS15555 fa895b9430ead89799868e2df9cd2238 359 Gene3D G3DSA:3.40.640.10 55 245 9.2E-54 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS15555 fa895b9430ead89799868e2df9cd2238 359 Pfam PF00155 Aminotransferase class I and II 29 352 6.9E-51 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS15555 fa895b9430ead89799868e2df9cd2238 359 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 8 354 1.3E-91 T 23-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 RD1_RS15555 fa895b9430ead89799868e2df9cd2238 359 PANTHER PTHR11751 3 356 1.9E-78 T 23-04-2016 RD1_RS15555 fa895b9430ead89799868e2df9cd2238 359 Gene3D G3DSA:3.90.1150.10 246 355 8.3E-26 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS15555 fa895b9430ead89799868e2df9cd2238 359 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 356 54.405 T 23-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 RD1_RS15555 fa895b9430ead89799868e2df9cd2238 359 PANTHER PTHR11751:SF347 3 356 1.9E-78 T 23-04-2016 RD1_RS18725 1fe560c2c51e34031d231056522bb2e5 253 Pfam PF01061 ABC-2 type transporter 6 216 1.7E-34 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 RD1_RS18725 1fe560c2c51e34031d231056522bb2e5 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 55 77 2.1E-13 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RD1_RS18725 1fe560c2c51e34031d231056522bb2e5 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 193 212 2.1E-13 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RD1_RS18725 1fe560c2c51e34031d231056522bb2e5 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 173 192 2.1E-13 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RD1_RS18725 1fe560c2c51e34031d231056522bb2e5 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 99 124 2.1E-13 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RD1_RS18725 1fe560c2c51e34031d231056522bb2e5 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 136 160 2.1E-13 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RD1_RS18725 1fe560c2c51e34031d231056522bb2e5 253 PANTHER PTHR30413 1 253 3.6E-104 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RD1_RS18725 1fe560c2c51e34031d231056522bb2e5 253 PIRSF PIRSF006648 6 250 2.9E-26 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RD1_RS18725 1fe560c2c51e34031d231056522bb2e5 253 PANTHER PTHR30413:SF5 1 253 3.6E-104 T 23-04-2016 RD1_RS00275 7aade6dc1f4f0ebbab98cefdc38c130e 144 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 29 114 1.4E-15 T 23-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RD1_RS00275 7aade6dc1f4f0ebbab98cefdc38c130e 144 Gene3D G3DSA:3.90.1590.10 3 124 8.9E-29 T 23-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RD1_RS00275 7aade6dc1f4f0ebbab98cefdc38c130e 144 PANTHER PTHR33337 6 100 7.0E-18 T 23-04-2016 RD1_RS00275 7aade6dc1f4f0ebbab98cefdc38c130e 144 PANTHER PTHR33337:SF4 6 100 7.0E-18 T 23-04-2016 RD1_RS00275 7aade6dc1f4f0ebbab98cefdc38c130e 144 SUPERFAMILY SSF51316 2 125 3.98E-31 T 23-04-2016 IPR011057 Mss4-like RD1_RS16050 bb568b9dba40e14a03d7807377ffea37 251 PRINTS PR00412 Epoxide hydrolase signature 38 53 1.6E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RD1_RS16050 bb568b9dba40e14a03d7807377ffea37 251 PRINTS PR00412 Epoxide hydrolase signature 80 93 1.6E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RD1_RS16050 bb568b9dba40e14a03d7807377ffea37 251 PRINTS PR00412 Epoxide hydrolase signature 226 248 1.6E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RD1_RS16050 bb568b9dba40e14a03d7807377ffea37 251 SUPERFAMILY SSF53474 3 250 2.64E-51 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS16050 bb568b9dba40e14a03d7807377ffea37 251 PANTHER PTHR10992:SF768 2 251 1.9E-82 T 23-04-2016 RD1_RS16050 bb568b9dba40e14a03d7807377ffea37 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 94 107 9.7E-8 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS16050 bb568b9dba40e14a03d7807377ffea37 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 38 53 9.7E-8 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS16050 bb568b9dba40e14a03d7807377ffea37 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 80 93 9.7E-8 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS16050 bb568b9dba40e14a03d7807377ffea37 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 195 209 9.7E-8 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS16050 bb568b9dba40e14a03d7807377ffea37 251 Pfam PF12697 Alpha/beta hydrolase family 15 241 3.3E-24 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS16050 bb568b9dba40e14a03d7807377ffea37 251 Gene3D G3DSA:3.40.50.1820 2 250 2.2E-53 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS16050 bb568b9dba40e14a03d7807377ffea37 251 PANTHER PTHR10992 2 251 1.9E-82 T 23-04-2016 RD1_RS18105 ba42168eca57c8c8719f409e8cbd3d18 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 69 4.7E-19 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS18105 ba42168eca57c8c8719f409e8cbd3d18 295 Gene3D G3DSA:3.40.190.10 97 180 3.8E-28 T 23-04-2016 RD1_RS18105 ba42168eca57c8c8719f409e8cbd3d18 295 Pfam PF03466 LysR substrate binding domain 94 293 8.9E-37 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS18105 ba42168eca57c8c8719f409e8cbd3d18 295 Gene3D G3DSA:3.40.190.10 181 262 1.8E-23 T 23-04-2016 RD1_RS18105 ba42168eca57c8c8719f409e8cbd3d18 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 1.4E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS18105 ba42168eca57c8c8719f409e8cbd3d18 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 1.4E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS18105 ba42168eca57c8c8719f409e8cbd3d18 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 1.4E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS18105 ba42168eca57c8c8719f409e8cbd3d18 295 SUPERFAMILY SSF46785 8 86 2.88E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18105 ba42168eca57c8c8719f409e8cbd3d18 295 PANTHER PTHR30537:SF15 4 294 1.2E-87 T 23-04-2016 RD1_RS18105 ba42168eca57c8c8719f409e8cbd3d18 295 PANTHER PTHR30537 4 294 1.2E-87 T 23-04-2016 RD1_RS18105 ba42168eca57c8c8719f409e8cbd3d18 295 Gene3D G3DSA:1.10.10.10 8 87 8.6E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18105 ba42168eca57c8c8719f409e8cbd3d18 295 SUPERFAMILY SSF53850 93 294 1.03E-37 T 23-04-2016 RD1_RS04595 44fc57f191d8330587947f987ad62914 320 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 315 1.7E-130 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS04595 44fc57f191d8330587947f987ad62914 320 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 2.0E-44 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS04595 44fc57f191d8330587947f987ad62914 320 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 2.0E-44 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS04595 44fc57f191d8330587947f987ad62914 320 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 2.0E-44 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS04595 44fc57f191d8330587947f987ad62914 320 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 2.0E-44 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS04595 44fc57f191d8330587947f987ad62914 320 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 2.0E-44 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS04595 44fc57f191d8330587947f987ad62914 320 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 2.0E-44 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS04595 44fc57f191d8330587947f987ad62914 320 PANTHER PTHR22855 4 314 1.1E-109 T 23-04-2016 RD1_RS04595 44fc57f191d8330587947f987ad62914 320 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 4 148 1.8E-60 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS04595 44fc57f191d8330587947f987ad62914 320 SUPERFAMILY SSF52096 5 314 4.68E-98 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS04595 44fc57f191d8330587947f987ad62914 320 Gene3D G3DSA:3.90.226.10 57 273 7.2E-46 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS04595 44fc57f191d8330587947f987ad62914 320 PANTHER PTHR22855:SF42 4 314 1.1E-109 T 23-04-2016 RD1_RS04595 44fc57f191d8330587947f987ad62914 320 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 4 316 48.481 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS09355 ab363689f2546dcb943c2c7c0a398e7f 502 Gene3D G3DSA:3.30.1120.10 376 439 1.8E-10 T 23-04-2016 RD1_RS09355 ab363689f2546dcb943c2c7c0a398e7f 502 Pfam PF00884 Sulfatase 4 345 1.5E-45 T 23-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 RD1_RS09355 ab363689f2546dcb943c2c7c0a398e7f 502 TIGRFAM TIGR03417 chol_sulfatase: choline-sulfatase 3 499 9.1E-276 T 23-04-2016 IPR017785 Choline-sulfatase UniPathway: UPA00290 RD1_RS09355 ab363689f2546dcb943c2c7c0a398e7f 502 SUPERFAMILY SSF53649 254 475 9.65E-107 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RD1_RS09355 ab363689f2546dcb943c2c7c0a398e7f 502 SUPERFAMILY SSF53649 2 210 9.65E-107 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RD1_RS09355 ab363689f2546dcb943c2c7c0a398e7f 502 Gene3D G3DSA:3.40.720.10 2 365 1.2E-85 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RD1_RS09355 ab363689f2546dcb943c2c7c0a398e7f 502 Pfam PF12411 Choline sulfatase enzyme C terminal 447 498 1.9E-22 T 23-04-2016 IPR025863 Choline sulfatase enzyme C-terminal domain UniPathway: UPA00290 RD1_RS09355 ab363689f2546dcb943c2c7c0a398e7f 502 PANTHER PTHR10342 2 467 3.0E-101 T 23-04-2016 RD1_RS09355 ab363689f2546dcb943c2c7c0a398e7f 502 PANTHER PTHR10342:SF207 2 467 3.0E-101 T 23-04-2016 RD1_RS09355 ab363689f2546dcb943c2c7c0a398e7f 502 ProSitePatterns PS00149 Sulfatases signature 2. 92 102 - T 23-04-2016 IPR024607 Sulfatase, conserved site RD1_RS16505 0d23fefb9dce0756ff57bdf08de14b91 304 PANTHER PTHR11795:SF371 1 295 2.1E-57 T 23-04-2016 RD1_RS16505 0d23fefb9dce0756ff57bdf08de14b91 304 PANTHER PTHR11795 1 295 2.1E-57 T 23-04-2016 RD1_RS16505 0d23fefb9dce0756ff57bdf08de14b91 304 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 286 9.5E-38 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 SMART SM00357 66 132 1.2E-11 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 Pfam PF07498 Rho termination factor, N-terminal domain 19 60 2.8E-14 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 432 235.536 T 23-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 TIGRFAM TIGR00767 rho: transcription termination factor Rho 16 431 1.8E-207 T 23-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 SMART SM00959 19 61 8.0E-15 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 PANTHER PTHR15184 1 416 3.2E-182 T 23-04-2016 RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 Gene3D G3DSA:2.40.50.140 63 130 1.5E-31 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 Gene3D G3DSA:3.40.50.300 145 430 3.3E-106 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 Pfam PF07497 Rho termination factor, RNA-binding domain 66 139 4.4E-29 T 23-04-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 174 377 1.4E-22 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 PANTHER PTHR15184:SF34 1 416 3.2E-182 T 23-04-2016 RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 Gene3D G3DSA:1.10.720.10 15 60 1.8E-19 T 23-04-2016 RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 SUPERFAMILY SSF68912 15 59 1.26E-10 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 SMART SM00382 184 369 4.3E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 SUPERFAMILY SSF52540 132 385 1.95E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02025 4494d7d3a9b8ff7186f0cf343b4e52be 432 SUPERFAMILY SSF50249 63 139 5.71E-26 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS09775 71482176844cd7cdbc3d39ab682b85f4 197 Gene3D G3DSA:1.25.40.10 47 169 4.0E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS09775 71482176844cd7cdbc3d39ab682b85f4 197 SMART SM00028 85 118 60.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS09775 71482176844cd7cdbc3d39ab682b85f4 197 SMART SM00028 119 152 0.0033 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS09775 71482176844cd7cdbc3d39ab682b85f4 197 Pfam PF13432 Tetratricopeptide repeat 57 117 5.3E-6 T 23-04-2016 RD1_RS09775 71482176844cd7cdbc3d39ab682b85f4 197 Pfam PF07719 Tetratricopeptide repeat 122 149 6.1E-6 T 23-04-2016 IPR013105 Tetratricopeptide repeat 2 RD1_RS09775 71482176844cd7cdbc3d39ab682b85f4 197 SUPERFAMILY SSF48452 53 171 2.03E-16 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS11630 fbad41237edc7dfb0729c2809e3df650 489 SUPERFAMILY SSF52172 236 307 2.73E-8 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS11630 fbad41237edc7dfb0729c2809e3df650 489 Gene3D G3DSA:3.40.50.2300 24 147 2.8E-22 T 23-04-2016 RD1_RS11630 fbad41237edc7dfb0729c2809e3df650 489 SMART SM00267 296 485 1.2E-53 T 23-04-2016 IPR000160 GGDEF domain RD1_RS11630 fbad41237edc7dfb0729c2809e3df650 489 Gene3D G3DSA:3.30.70.270 317 487 1.6E-50 T 23-04-2016 RD1_RS11630 fbad41237edc7dfb0729c2809e3df650 489 Pfam PF00990 Diguanylate cyclase, GGDEF domain 315 481 1.4E-41 T 23-04-2016 IPR000160 GGDEF domain RD1_RS11630 fbad41237edc7dfb0729c2809e3df650 489 SMART SM00448 24 137 9.6E-15 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS11630 fbad41237edc7dfb0729c2809e3df650 489 SUPERFAMILY SSF52172 24 152 1.24E-24 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS11630 fbad41237edc7dfb0729c2809e3df650 489 Pfam PF00072 Response regulator receiver domain 26 137 1.3E-11 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS11630 fbad41237edc7dfb0729c2809e3df650 489 SUPERFAMILY SSF55073 319 484 8.63E-44 T 23-04-2016 IPR029787 Nucleotide cyclase RD1_RS11630 fbad41237edc7dfb0729c2809e3df650 489 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 313 484 7.1E-46 T 23-04-2016 IPR000160 GGDEF domain RD1_RS11630 fbad41237edc7dfb0729c2809e3df650 489 PANTHER PTHR10799 340 486 7.7E-25 T 23-04-2016 RD1_RS11630 fbad41237edc7dfb0729c2809e3df650 489 Gene3D G3DSA:3.40.50.2300 235 302 1.8E-7 T 23-04-2016 RD1_RS18095 53a7c958157f7282a79d4d8f14c34d9d 351 Gene3D G3DSA:2.40.50.140 273 332 2.3E-9 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS18095 53a7c958157f7282a79d4d8f14c34d9d 351 SUPERFAMILY SSF52540 4 242 2.59E-86 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18095 53a7c958157f7282a79d4d8f14c34d9d 351 PANTHER PTHR24220:SF151 5 246 2.3E-156 T 23-04-2016 RD1_RS18095 53a7c958157f7282a79d4d8f14c34d9d 351 Pfam PF00005 ABC transporter 20 161 1.3E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS18095 53a7c958157f7282a79d4d8f14c34d9d 351 Gene3D G3DSA:3.40.50.300 3 234 6.3E-78 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18095 53a7c958157f7282a79d4d8f14c34d9d 351 SUPERFAMILY SSF50331 236 348 2.02E-22 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS18095 53a7c958157f7282a79d4d8f14c34d9d 351 PANTHER PTHR24220 5 246 2.3E-156 T 23-04-2016 RD1_RS18095 53a7c958157f7282a79d4d8f14c34d9d 351 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS18095 53a7c958157f7282a79d4d8f14c34d9d 351 SMART SM00382 28 211 1.4E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS05165 8fa4fa309984c09dec14719cbf5e49eb 756 Gene3D G3DSA:3.40.50.300 518 746 4.0E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05165 8fa4fa309984c09dec14719cbf5e49eb 756 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 55 749 8.1E-250 T 23-04-2016 IPR017750 ATPase, type I secretion system RD1_RS05165 8fa4fa309984c09dec14719cbf5e49eb 756 Gene3D G3DSA:3.90.70.10 54 177 2.6E-27 T 23-04-2016 RD1_RS05165 8fa4fa309984c09dec14719cbf5e49eb 756 SMART SM00382 545 733 1.6E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS05165 8fa4fa309984c09dec14719cbf5e49eb 756 ProSitePatterns PS00211 ABC transporters family signature. 657 671 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS05165 8fa4fa309984c09dec14719cbf5e49eb 756 Gene3D G3DSA:1.20.1560.10 192 496 7.0E-47 T 23-04-2016 RD1_RS05165 8fa4fa309984c09dec14719cbf5e49eb 756 SUPERFAMILY SSF52540 511 745 3.24E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05165 8fa4fa309984c09dec14719cbf5e49eb 756 SUPERFAMILY SSF90123 192 497 1.57E-46 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS05165 8fa4fa309984c09dec14719cbf5e49eb 756 Pfam PF00664 ABC transporter transmembrane region 208 464 1.7E-18 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS05165 8fa4fa309984c09dec14719cbf5e49eb 756 PANTHER PTHR24221:SF248 174 744 1.4E-135 T 23-04-2016 RD1_RS05165 8fa4fa309984c09dec14719cbf5e49eb 756 PANTHER PTHR24221:SF248 57 117 1.4E-135 T 23-04-2016 RD1_RS05165 8fa4fa309984c09dec14719cbf5e49eb 756 Pfam PF00005 ABC transporter 536 685 3.4E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS05165 8fa4fa309984c09dec14719cbf5e49eb 756 PANTHER PTHR24221 174 744 1.4E-135 T 23-04-2016 RD1_RS05165 8fa4fa309984c09dec14719cbf5e49eb 756 PANTHER PTHR24221 57 117 1.4E-135 T 23-04-2016 RD1_RS18200 026944650291e61db96dcb27762a00b3 210 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 4 210 45.257 T 23-04-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 RD1_RS18200 026944650291e61db96dcb27762a00b3 210 SUPERFAMILY SSF53271 5 208 8.52E-69 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS18200 026944650291e61db96dcb27762a00b3 210 Gene3D G3DSA:3.40.50.2020 5 210 2.2E-80 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS18200 026944650291e61db96dcb27762a00b3 210 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 5 210 4.2E-83 T 23-04-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 RD1_RS18200 026944650291e61db96dcb27762a00b3 210 PANTHER PTHR10285 1 199 1.9E-89 T 23-04-2016 RD1_RS18200 026944650291e61db96dcb27762a00b3 210 Pfam PF14681 Uracil phosphoribosyltransferase 8 209 5.5E-72 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS09075 caf82dc1eb410b1ad5ca1b4825bfea92 635 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 56 162 4.2E-18 T 23-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 RD1_RS09075 caf82dc1eb410b1ad5ca1b4825bfea92 635 PANTHER PTHR10587 158 410 2.6E-31 T 23-04-2016 RD1_RS09075 caf82dc1eb410b1ad5ca1b4825bfea92 635 SUPERFAMILY SSF160246 18 158 2.88E-22 T 23-04-2016 RD1_RS09075 caf82dc1eb410b1ad5ca1b4825bfea92 635 SUPERFAMILY SSF53448 249 511 2.81E-41 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS09075 caf82dc1eb410b1ad5ca1b4825bfea92 635 PANTHER PTHR10587:SF79 158 410 2.6E-31 T 23-04-2016 RD1_RS09075 caf82dc1eb410b1ad5ca1b4825bfea92 635 Pfam PF13641 Glycosyltransferase like family 2 253 480 8.5E-36 T 23-04-2016 RD1_RS09075 caf82dc1eb410b1ad5ca1b4825bfea92 635 Gene3D G3DSA:3.90.550.10 253 493 5.3E-20 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS11510 a6ba360342fa28a27f7ec1a15a0d35d1 294 Pfam PF00106 short chain dehydrogenase 5 198 5.9E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS11510 a6ba360342fa28a27f7ec1a15a0d35d1 294 Gene3D G3DSA:3.40.50.720 5 262 2.4E-65 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11510 a6ba360342fa28a27f7ec1a15a0d35d1 294 SUPERFAMILY SSF51735 4 252 3.49E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11510 a6ba360342fa28a27f7ec1a15a0d35d1 294 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS11510 a6ba360342fa28a27f7ec1a15a0d35d1 294 PANTHER PTHR24322 157 188 2.1E-49 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS11510 a6ba360342fa28a27f7ec1a15a0d35d1 294 PANTHER PTHR24322 9 141 2.1E-49 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS11510 a6ba360342fa28a27f7ec1a15a0d35d1 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 2.8E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS11510 a6ba360342fa28a27f7ec1a15a0d35d1 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 2.8E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS11510 a6ba360342fa28a27f7ec1a15a0d35d1 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 2.8E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS11510 a6ba360342fa28a27f7ec1a15a0d35d1 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.1E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS11510 a6ba360342fa28a27f7ec1a15a0d35d1 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.1E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS11510 a6ba360342fa28a27f7ec1a15a0d35d1 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.1E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS11510 a6ba360342fa28a27f7ec1a15a0d35d1 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.1E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS11510 a6ba360342fa28a27f7ec1a15a0d35d1 294 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 191 0.0018 T 23-04-2016 RD1_RS04455 c380d489e6d7d7c08a248f26ed0ecd38 221 Pfam PF13488 Glycine zipper 39 86 1.6E-11 T 23-04-2016 RD1_RS04455 c380d489e6d7d7c08a248f26ed0ecd38 221 PRINTS PR01021 OMPA domain signature 117 139 2.9E-12 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RD1_RS04455 c380d489e6d7d7c08a248f26ed0ecd38 221 PRINTS PR01021 OMPA domain signature 162 178 2.9E-12 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RD1_RS04455 c380d489e6d7d7c08a248f26ed0ecd38 221 PRINTS PR01021 OMPA domain signature 147 162 2.9E-12 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RD1_RS04455 c380d489e6d7d7c08a248f26ed0ecd38 221 PANTHER PTHR30128 40 221 1.0E-49 T 23-04-2016 RD1_RS04455 c380d489e6d7d7c08a248f26ed0ecd38 221 Gene3D G3DSA:3.30.1330.60 96 217 2.2E-38 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS04455 c380d489e6d7d7c08a248f26ed0ecd38 221 Pfam PF00691 OmpA family 116 211 3.5E-22 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS04455 c380d489e6d7d7c08a248f26ed0ecd38 221 SUPERFAMILY SSF103088 104 219 1.83E-37 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS04455 c380d489e6d7d7c08a248f26ed0ecd38 221 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 162 179 1.3E-5 T 23-04-2016 RD1_RS04455 c380d489e6d7d7c08a248f26ed0ecd38 221 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 200 220 1.3E-5 T 23-04-2016 RD1_RS04455 c380d489e6d7d7c08a248f26ed0ecd38 221 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 180 199 1.3E-5 T 23-04-2016 RD1_RS18890 eb4439a4dc0ababdde4a4fb9c458a020 363 Pfam PF00005 ABC transporter 24 166 5.9E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS18890 eb4439a4dc0ababdde4a4fb9c458a020 363 PANTHER PTHR24220 10 306 1.3E-141 T 23-04-2016 RD1_RS18890 eb4439a4dc0ababdde4a4fb9c458a020 363 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 39 357 8.4E-117 T 23-04-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 RD1_RS18890 eb4439a4dc0ababdde4a4fb9c458a020 363 PANTHER PTHR24220:SF150 10 306 1.3E-141 T 23-04-2016 RD1_RS18890 eb4439a4dc0ababdde4a4fb9c458a020 363 Pfam PF08402 TOBE domain 283 361 1.4E-10 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS18890 eb4439a4dc0ababdde4a4fb9c458a020 363 SUPERFAMILY SSF52540 9 248 6.69E-88 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18890 eb4439a4dc0ababdde4a4fb9c458a020 363 Gene3D G3DSA:3.40.50.300 6 241 3.2E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18890 eb4439a4dc0ababdde4a4fb9c458a020 363 SUPERFAMILY SSF50331 241 360 3.74E-13 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS18890 eb4439a4dc0ababdde4a4fb9c458a020 363 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS18890 eb4439a4dc0ababdde4a4fb9c458a020 363 SMART SM00382 33 216 2.1E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS15920 fb5640161ae7f47f18f64471ada062b0 225 PANTHER PTHR26402:SF578 1 219 1.2E-72 T 23-04-2016 RD1_RS15920 fb5640161ae7f47f18f64471ada062b0 225 Gene3D G3DSA:1.10.10.10 123 219 2.4E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS15920 fb5640161ae7f47f18f64471ada062b0 225 PANTHER PTHR26402 1 219 1.2E-72 T 23-04-2016 RD1_RS15920 fb5640161ae7f47f18f64471ada062b0 225 SMART SM00448 1 111 2.5E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS15920 fb5640161ae7f47f18f64471ada062b0 225 Pfam PF00072 Response regulator receiver domain 3 110 4.4E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS15920 fb5640161ae7f47f18f64471ada062b0 225 SUPERFAMILY SSF52172 1 170 2.28E-33 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS15920 fb5640161ae7f47f18f64471ada062b0 225 SMART SM00862 144 219 1.6E-17 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS15920 fb5640161ae7f47f18f64471ada062b0 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 219 2.8E-16 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS15920 fb5640161ae7f47f18f64471ada062b0 225 Gene3D G3DSA:3.40.50.2300 1 119 3.9E-33 T 23-04-2016 RD1_RS18005 19fb36cd051b19b087005b788b4ebf18 267 PANTHER PTHR10992 8 258 7.1E-50 T 23-04-2016 RD1_RS18005 19fb36cd051b19b087005b788b4ebf18 267 SUPERFAMILY SSF53474 1 257 4.61E-62 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS18005 19fb36cd051b19b087005b788b4ebf18 267 PANTHER PTHR10992:SF771 8 258 7.1E-50 T 23-04-2016 RD1_RS18005 19fb36cd051b19b087005b788b4ebf18 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 6.8E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS18005 19fb36cd051b19b087005b788b4ebf18 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 6.8E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS18005 19fb36cd051b19b087005b788b4ebf18 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 6.8E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS18005 19fb36cd051b19b087005b788b4ebf18 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 202 216 6.8E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS18005 19fb36cd051b19b087005b788b4ebf18 267 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 11 257 3.1E-97 T 23-04-2016 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185|UniPathway: UPA00157 RD1_RS18005 19fb36cd051b19b087005b788b4ebf18 267 Gene3D G3DSA:3.40.50.1820 1 258 6.2E-61 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS18005 19fb36cd051b19b087005b788b4ebf18 267 Pfam PF12697 Alpha/beta hydrolase family 24 250 4.6E-17 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS06520 38cdf410105226b5de715e4d9f243d0f 235 PANTHER PTHR11760:SF19 2 209 1.9E-125 T 23-04-2016 RD1_RS06520 38cdf410105226b5de715e4d9f243d0f 235 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 2.4E-93 T 23-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RD1_RS06520 38cdf410105226b5de715e4d9f243d0f 235 SUPERFAMILY SSF54821 108 206 7.72E-39 T 23-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 RD1_RS06520 38cdf410105226b5de715e4d9f243d0f 235 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 23-04-2016 IPR018280 Ribosomal protein S3, conserved site RD1_RS06520 38cdf410105226b5de715e4d9f243d0f 235 Gene3D G3DSA:3.30.300.20 17 107 8.4E-35 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RD1_RS06520 38cdf410105226b5de715e4d9f243d0f 235 Gene3D G3DSA:3.30.1140.32 108 207 1.3E-44 T 23-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 RD1_RS06520 38cdf410105226b5de715e4d9f243d0f 235 Pfam PF07650 KH domain 39 111 1.3E-19 T 23-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 RD1_RS06520 38cdf410105226b5de715e4d9f243d0f 235 SMART SM00322 60 125 3.7E-8 T 23-04-2016 IPR004087 K Homology domain GO:0003676 RD1_RS06520 38cdf410105226b5de715e4d9f243d0f 235 SUPERFAMILY SSF54814 2 106 1.07E-37 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RD1_RS06520 38cdf410105226b5de715e4d9f243d0f 235 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 38.846 T 23-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RD1_RS06520 38cdf410105226b5de715e4d9f243d0f 235 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 1.0E-38 T 23-04-2016 RD1_RS06520 38cdf410105226b5de715e4d9f243d0f 235 PANTHER PTHR11760 2 209 1.9E-125 T 23-04-2016 RD1_RS04735 be5ed2837c194405317804abd4ba595d 519 PANTHER PTHR23150 170 343 3.9E-13 T 23-04-2016 RD1_RS04735 be5ed2837c194405317804abd4ba595d 519 PANTHER PTHR23150 136 151 3.9E-13 T 23-04-2016 RD1_RS04735 be5ed2837c194405317804abd4ba595d 519 SUPERFAMILY SSF56436 66 307 5.18E-27 T 23-04-2016 IPR016187 C-type lectin fold RD1_RS04735 be5ed2837c194405317804abd4ba595d 519 Gene3D G3DSA:3.90.1580.10 69 308 2.6E-25 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme RD1_RS04735 be5ed2837c194405317804abd4ba595d 519 Pfam PF03781 Sulfatase-modifying factor enzyme 1 136 283 2.3E-18 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme RD1_RS04735 be5ed2837c194405317804abd4ba595d 519 PANTHER PTHR23150:SF19 170 343 3.9E-13 T 23-04-2016 RD1_RS04735 be5ed2837c194405317804abd4ba595d 519 PANTHER PTHR23150:SF19 136 151 3.9E-13 T 23-04-2016 RD1_RS14090 3799652d2a2d4e8eef358e20875ee9aa 78 Pfam PF13683 Integrase core domain 1 37 4.6E-9 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS04815 f42e49fbfa1c381b8da17eedc4032b74 197 Pfam PF13662 Toprim domain 81 167 9.7E-23 T 23-04-2016 IPR006171 Toprim domain RD1_RS04815 f42e49fbfa1c381b8da17eedc4032b74 197 SMART SM00493 80 165 4.1E-7 T 23-04-2016 IPR006171 Toprim domain RD1_RS04815 f42e49fbfa1c381b8da17eedc4032b74 197 PANTHER PTHR30446:SF0 1 197 1.9E-77 T 23-04-2016 RD1_RS04815 f42e49fbfa1c381b8da17eedc4032b74 197 SUPERFAMILY SSF111304 4 197 9.02E-64 T 23-04-2016 IPR023627 Recombination protein RecR RD1_RS04815 f42e49fbfa1c381b8da17eedc4032b74 197 Hamap MF_00017 Recombination protein RecR [recR]. 1 197 85.597 T 23-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RD1_RS04815 f42e49fbfa1c381b8da17eedc4032b74 197 PANTHER PTHR30446 1 197 1.9E-77 T 23-04-2016 RD1_RS04815 f42e49fbfa1c381b8da17eedc4032b74 197 Pfam PF02132 RecR protein 42 77 1.1E-8 T 23-04-2016 IPR023628 Recombination protein RecR, C4-type zinc finger RD1_RS04815 f42e49fbfa1c381b8da17eedc4032b74 197 TIGRFAM TIGR00615 recR: recombination protein RecR 4 195 2.6E-58 T 23-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RD1_RS02565 ca1fb2d85421b7879e0bce4ce337d5d2 289 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 13 288 2.6E-86 T 23-04-2016 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|UniPathway: UPA00047|UniPathway: UPA00048|UniPathway: UPA00049 RD1_RS02565 ca1fb2d85421b7879e0bce4ce337d5d2 289 PANTHER PTHR11825 6 289 5.4E-78 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS02565 ca1fb2d85421b7879e0bce4ce337d5d2 289 Gene3D G3DSA:3.20.10.10 133 287 8.4E-47 T 23-04-2016 RD1_RS02565 ca1fb2d85421b7879e0bce4ce337d5d2 289 Pfam PF01063 Amino-transferase class IV 39 265 3.5E-45 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS02565 ca1fb2d85421b7879e0bce4ce337d5d2 289 PANTHER PTHR11825:SF7 6 289 5.4E-78 T 23-04-2016 RD1_RS02565 ca1fb2d85421b7879e0bce4ce337d5d2 289 SUPERFAMILY SSF56752 7 286 4.06E-85 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS02565 ca1fb2d85421b7879e0bce4ce337d5d2 289 Gene3D G3DSA:3.30.470.10 5 107 1.3E-37 T 23-04-2016 RD1_RS02565 ca1fb2d85421b7879e0bce4ce337d5d2 289 ProSitePatterns PS00770 Aminotransferases class-IV signature. 192 220 - T 23-04-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS05195 11b769ecd31cd598ff4e10cf0c2feea5 310 SUPERFAMILY SSF103481 49 148 1.16E-7 T 23-04-2016 RD1_RS05195 11b769ecd31cd598ff4e10cf0c2feea5 310 Pfam PF00892 EamA-like transporter family 14 145 3.9E-9 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS05195 11b769ecd31cd598ff4e10cf0c2feea5 310 Pfam PF00892 EamA-like transporter family 160 290 8.7E-8 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS05195 11b769ecd31cd598ff4e10cf0c2feea5 310 PANTHER PTHR12715 1 290 2.7E-25 T 23-04-2016 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 PIRSF PIRSF000770 13 296 4.5E-38 T 23-04-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 Pfam PF00140 Sigma-70 factor, region 1.2 18 41 3.3E-7 T 23-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 287 51.411 T 23-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 Pfam PF04542 Sigma-70 region 2 53 121 5.3E-16 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 255 281 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 Gene3D G3DSA:1.10.601.10 16 119 5.5E-35 T 23-04-2016 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 Gene3D G3DSA:1.10.10.10 226 287 2.2E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 SUPERFAMILY SSF88659 194 287 3.18E-20 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 SUPERFAMILY SSF88946 12 121 8.95E-38 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 PRINTS PR00046 Major sigma-70 factor signature 77 90 1.2E-20 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 PRINTS PR00046 Major sigma-70 factor signature 255 270 1.2E-20 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 PRINTS PR00046 Major sigma-70 factor signature 101 109 1.2E-20 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 PRINTS PR00046 Major sigma-70 factor signature 270 281 1.2E-20 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 PRINTS PR00046 Major sigma-70 factor signature 236 248 1.2E-20 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 PANTHER PTHR30376 2 283 1.9E-101 T 23-04-2016 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 Pfam PF04545 Sigma-70, region 4 232 283 9.2E-16 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 15 285 8.1E-111 T 23-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 RD1_RS08370 af0c181fbe0f03f0789f3c79e8540015 298 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 285 2.3E-31 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 SMART SM00710 78 106 490.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 SMART SM00710 226 248 1500.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 SMART SM00710 249 271 1200.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 SMART SM00710 130 159 670.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 SMART SM00710 204 225 2600.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 SMART SM00710 182 203 630.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 SMART SM00710 272 293 380.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 SMART SM00710 108 129 5.6 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 SMART SM00710 295 348 8100.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 SMART SM00710 160 181 10.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 TIGRFAM TIGR04247 NosD_copper_fam: nitrous oxide reductase family maturation protein NosD 25 400 6.7E-140 T 23-04-2016 IPR026464 Nitrous oxide reductase family maturation protein NosD RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 SUPERFAMILY SSF51126 21 389 7.76E-73 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 154 193 7.3E-6 T 23-04-2016 IPR022441 Parallel beta-helix repeat-2 RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 Pfam PF05048 Periplasmic copper-binding protein (NosD) 138 363 8.1E-59 T 23-04-2016 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 Gene3D G3DSA:2.160.20.10 23 375 7.6E-31 T 23-04-2016 IPR012334 Pectin lyase fold RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 SMART SM00722 186 356 2.1E-21 T 23-04-2016 IPR006633 Carbohydrate-binding/sugar hydrolysis domain RD1_RS07150 b1573b2f195f8e0ec1013a8e0dd26b3e 415 SMART SM00722 32 180 2.7E-17 T 23-04-2016 IPR006633 Carbohydrate-binding/sugar hydrolysis domain RD1_RS15490 cdbf473759b28330213842ace146d8b6 385 PIRSF PIRSF000138 2 379 6.4E-116 T 23-04-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 RD1_RS15490 cdbf473759b28330213842ace146d8b6 385 SUPERFAMILY SSF51395 7 370 7.33E-90 T 23-04-2016 RD1_RS15490 cdbf473759b28330213842ace146d8b6 385 Gene3D G3DSA:3.20.20.70 10 371 8.1E-113 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS15490 cdbf473759b28330213842ace146d8b6 385 Pfam PF01070 FMN-dependent dehydrogenase 17 371 8.0E-119 T 23-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 RD1_RS15490 cdbf473759b28330213842ace146d8b6 385 PANTHER PTHR10578:SF65 10 369 5.3E-105 T 23-04-2016 RD1_RS15490 cdbf473759b28330213842ace146d8b6 385 PANTHER PTHR10578 10 369 5.3E-105 T 23-04-2016 RD1_RS15730 a5b952cfb48ad71dddf2e1df808d3063 259 Pfam PF03167 Uracil DNA glycosylase superfamily 103 249 6.6E-44 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS15730 a5b952cfb48ad71dddf2e1df808d3063 259 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 88 254 4.6E-54 T 23-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain RD1_RS15730 a5b952cfb48ad71dddf2e1df808d3063 259 SMART SM00986 101 250 2.1E-40 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS15730 a5b952cfb48ad71dddf2e1df808d3063 259 SMART SM00987 101 250 2.1E-40 T 23-04-2016 RD1_RS15730 a5b952cfb48ad71dddf2e1df808d3063 259 PANTHER PTHR33693:SF1 43 256 5.9E-68 T 23-04-2016 RD1_RS15730 a5b952cfb48ad71dddf2e1df808d3063 259 Gene3D G3DSA:3.40.470.10 76 257 2.1E-64 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS15730 a5b952cfb48ad71dddf2e1df808d3063 259 SUPERFAMILY SSF52141 75 257 1.34E-58 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS15730 a5b952cfb48ad71dddf2e1df808d3063 259 PANTHER PTHR33693 43 256 5.9E-68 T 23-04-2016 RD1_RS12945 69a3c1230e220571f0dd11a14e7e9078 386 PANTHER PTHR21266:SF2 14 372 4.3E-54 T 23-04-2016 RD1_RS12945 69a3c1230e220571f0dd11a14e7e9078 386 SUPERFAMILY SSF55961 184 378 6.99E-47 T 23-04-2016 RD1_RS12945 69a3c1230e220571f0dd11a14e7e9078 386 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 190 375 1.6E-31 T 23-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 RD1_RS12945 69a3c1230e220571f0dd11a14e7e9078 386 PANTHER PTHR21266 14 372 4.3E-54 T 23-04-2016 RD1_RS12945 69a3c1230e220571f0dd11a14e7e9078 386 SUPERFAMILY SSF50022 8 160 2.75E-39 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS12945 69a3c1230e220571f0dd11a14e7e9078 386 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 100 120 1.4E-9 T 23-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 RD1_RS12945 69a3c1230e220571f0dd11a14e7e9078 386 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 79 99 1.4E-9 T 23-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 RD1_RS12945 69a3c1230e220571f0dd11a14e7e9078 386 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 185 207 1.4E-9 T 23-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 RD1_RS12945 69a3c1230e220571f0dd11a14e7e9078 386 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 28 53 1.4E-9 T 23-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 RD1_RS12945 69a3c1230e220571f0dd11a14e7e9078 386 Gene3D G3DSA:2.102.10.10 43 153 7.5E-28 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS12945 69a3c1230e220571f0dd11a14e7e9078 386 Pfam PF00355 Rieske [2Fe-2S] domain 47 124 2.8E-15 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS12945 69a3c1230e220571f0dd11a14e7e9078 386 Gene3D G3DSA:3.90.380.10 154 372 2.0E-23 T 23-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 RD1_RS04490 820a95a886cd3791117486e00e507b20 252 Gene3D G3DSA:3.30.70.20 142 214 1.2E-33 T 23-04-2016 RD1_RS04490 820a95a886cd3791117486e00e507b20 252 Gene3D G3DSA:3.30.70.20 11 89 1.2E-33 T 23-04-2016 RD1_RS04490 820a95a886cd3791117486e00e507b20 252 PANTHER PTHR11938:SF107 11 36 1.0E-47 T 23-04-2016 RD1_RS04490 820a95a886cd3791117486e00e507b20 252 PANTHER PTHR11938:SF107 57 197 1.0E-47 T 23-04-2016 RD1_RS04490 820a95a886cd3791117486e00e507b20 252 Pfam PF13247 4Fe-4S dicluster domain 75 176 6.4E-24 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS04490 820a95a886cd3791117486e00e507b20 252 SUPERFAMILY SSF54862 10 213 6.8E-65 T 23-04-2016 RD1_RS04490 820a95a886cd3791117486e00e507b20 252 Pfam PF12800 4Fe-4S binding domain 19 32 0.0044 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS04490 820a95a886cd3791117486e00e507b20 252 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 115 126 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS04490 820a95a886cd3791117486e00e507b20 252 Gene3D G3DSA:3.30.70.20 90 141 8.3E-26 T 23-04-2016 RD1_RS04490 820a95a886cd3791117486e00e507b20 252 PANTHER PTHR11938 11 36 1.0E-47 T 23-04-2016 RD1_RS04490 820a95a886cd3791117486e00e507b20 252 PANTHER PTHR11938 57 197 1.0E-47 T 23-04-2016 RD1_RS02525 81e23b0b957964de45666cd58d0c3f72 305 PANTHER PTHR36110:SF2 4 305 1.8E-111 T 23-04-2016 RD1_RS02525 81e23b0b957964de45666cd58d0c3f72 305 Gene3D G3DSA:3.10.180.10 139 303 2.0E-42 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS02525 81e23b0b957964de45666cd58d0c3f72 305 Gene3D G3DSA:3.10.180.10 5 131 1.7E-29 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS02525 81e23b0b957964de45666cd58d0c3f72 305 SUPERFAMILY SSF54593 5 284 1.96E-46 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS02525 81e23b0b957964de45666cd58d0c3f72 305 PANTHER PTHR36110 4 305 1.8E-111 T 23-04-2016 RD1_RS02525 81e23b0b957964de45666cd58d0c3f72 305 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 130 1.1E-8 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RD1_RS02525 81e23b0b957964de45666cd58d0c3f72 305 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 143 263 8.4E-18 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RD1_RS17295 b0d44eecc457b0a921bc72e4e7761b24 195 PANTHER PTHR33711:SF2 9 194 1.2E-49 T 23-04-2016 RD1_RS17295 b0d44eecc457b0a921bc72e4e7761b24 195 SUPERFAMILY SSF49482 9 195 1.15E-49 T 23-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RD1_RS17295 b0d44eecc457b0a921bc72e4e7761b24 195 TIGRFAM TIGR02423 protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit 11 195 7.5E-64 T 23-04-2016 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit GO:0005506|GO:0018578|GO:0019439|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|UniPathway: UPA00157 RD1_RS17295 b0d44eecc457b0a921bc72e4e7761b24 195 PANTHER PTHR33711 9 194 1.2E-49 T 23-04-2016 RD1_RS17295 b0d44eecc457b0a921bc72e4e7761b24 195 Pfam PF00775 Dioxygenase 46 184 5.7E-10 T 23-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RD1_RS17295 b0d44eecc457b0a921bc72e4e7761b24 195 Gene3D G3DSA:2.60.130.10 8 194 1.9E-54 T 23-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RD1_RS11690 87f9b5e43e113ebedfc0f3fd09d71ed6 428 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 11 131 9.6E-14 T 23-04-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 RD1_RS11690 87f9b5e43e113ebedfc0f3fd09d71ed6 428 SUPERFAMILY SSF55021 347 412 5.12E-13 T 23-04-2016 RD1_RS11690 87f9b5e43e113ebedfc0f3fd09d71ed6 428 Pfam PF00742 Homoserine dehydrogenase 139 316 1.3E-57 T 23-04-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 RD1_RS11690 87f9b5e43e113ebedfc0f3fd09d71ed6 428 SUPERFAMILY SSF51735 4 142 2.63E-30 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11690 87f9b5e43e113ebedfc0f3fd09d71ed6 428 Pfam PF01842 ACT domain 349 411 2.8E-12 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RD1_RS11690 87f9b5e43e113ebedfc0f3fd09d71ed6 428 Gene3D G3DSA:3.40.50.720 2 150 1.2E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11690 87f9b5e43e113ebedfc0f3fd09d71ed6 428 Gene3D G3DSA:3.30.70.260 348 411 3.6E-7 T 23-04-2016 RD1_RS11690 87f9b5e43e113ebedfc0f3fd09d71ed6 428 PANTHER PTHR21499 5 321 4.8E-110 T 23-04-2016 RD1_RS11690 87f9b5e43e113ebedfc0f3fd09d71ed6 428 SUPERFAMILY SSF55347 139 304 1.05E-46 T 23-04-2016 RD1_RS11690 87f9b5e43e113ebedfc0f3fd09d71ed6 428 PANTHER PTHR21499:SF2 5 321 4.8E-110 T 23-04-2016 RD1_RS11690 87f9b5e43e113ebedfc0f3fd09d71ed6 428 PIRSF PIRSF000098 2 428 5.8E-142 T 23-04-2016 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 RD1_RS11690 87f9b5e43e113ebedfc0f3fd09d71ed6 428 Gene3D G3DSA:3.30.360.10 151 300 1.5E-49 T 23-04-2016 RD1_RS15125 00a553113a65ccf0a8209fab9e006515 163 PANTHER PTHR10900 29 163 1.8E-52 T 23-04-2016 RD1_RS15125 00a553113a65ccf0a8209fab9e006515 163 Pfam PF02469 Fasciclin domain 40 163 3.1E-37 T 23-04-2016 IPR000782 FAS1 domain RD1_RS15125 00a553113a65ccf0a8209fab9e006515 163 SMART SM00554 64 163 1.3E-30 T 23-04-2016 IPR000782 FAS1 domain RD1_RS15125 00a553113a65ccf0a8209fab9e006515 163 SUPERFAMILY SSF82153 30 163 2.35E-41 T 23-04-2016 IPR000782 FAS1 domain RD1_RS15125 00a553113a65ccf0a8209fab9e006515 163 Gene3D G3DSA:2.30.180.10 30 163 4.0E-43 T 23-04-2016 IPR000782 FAS1 domain RD1_RS03985 7bdd494d4da1e7d8c55e3b9d68e7f269 303 SUPERFAMILY SSF63829 3 299 1.33E-66 T 23-04-2016 RD1_RS03985 7bdd494d4da1e7d8c55e3b9d68e7f269 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 162 184 3.3E-6 T 23-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) RD1_RS03985 7bdd494d4da1e7d8c55e3b9d68e7f269 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 229 246 3.3E-6 T 23-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) RD1_RS03985 7bdd494d4da1e7d8c55e3b9d68e7f269 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 31 48 3.3E-6 T 23-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) RD1_RS03985 7bdd494d4da1e7d8c55e3b9d68e7f269 303 PANTHER PTHR10907 1 298 1.1E-95 T 23-04-2016 RD1_RS03985 7bdd494d4da1e7d8c55e3b9d68e7f269 303 Gene3D G3DSA:2.120.10.30 14 300 6.0E-73 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RD1_RS03985 7bdd494d4da1e7d8c55e3b9d68e7f269 303 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 30 286 7.7E-57 T 23-04-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region RD1_RS03985 7bdd494d4da1e7d8c55e3b9d68e7f269 303 PANTHER PTHR10907:SF47 1 298 1.1E-95 T 23-04-2016 RD1_RS16170 fac5c6a762f5a72c2a5aca5fbd794711 151 Pfam PF00293 NUDIX domain 7 126 3.6E-13 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RD1_RS16170 fac5c6a762f5a72c2a5aca5fbd794711 151 SUPERFAMILY SSF55811 3 128 2.84E-23 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS16170 fac5c6a762f5a72c2a5aca5fbd794711 151 Gene3D G3DSA:3.90.79.10 4 128 3.9E-25 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS16170 fac5c6a762f5a72c2a5aca5fbd794711 151 PANTHER PTHR22769 1 130 7.9E-16 T 23-04-2016 RD1_RS01090 805cafccbfb9e20adb24719e82820618 403 Pfam PF06224 Winged helix DNA-binding domain 38 387 1.5E-71 T 23-04-2016 IPR009351 Protein of unknown function DUF1006 RD1_RS01090 805cafccbfb9e20adb24719e82820618 403 PANTHER PTHR30528 3 403 9.0E-74 T 23-04-2016 RD1_RS16355 fe4334ced470e3552343c797d55be494 195 PANTHER PTHR23133 1 195 2.5E-102 T 23-04-2016 RD1_RS16355 fe4334ced470e3552343c797d55be494 195 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 61 74 - T 23-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 RD1_RS16355 fe4334ced470e3552343c797d55be494 195 SUPERFAMILY SSF54211 1 86 7.71E-34 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS16355 fe4334ced470e3552343c797d55be494 195 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 31 174 1.4E-66 T 23-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 RD1_RS16355 fe4334ced470e3552343c797d55be494 195 Gene3D G3DSA:3.30.230.40 90 195 2.8E-32 T 23-04-2016 RD1_RS16355 fe4334ced470e3552343c797d55be494 195 Gene3D G3DSA:3.30.230.40 1 88 5.7E-38 T 23-04-2016 RD1_RS16355 fe4334ced470e3552343c797d55be494 195 PANTHER PTHR23133:SF2 1 195 2.5E-102 T 23-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 RD1_RS16355 fe4334ced470e3552343c797d55be494 195 SUPERFAMILY SSF54211 87 179 1.64E-35 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS16355 fe4334ced470e3552343c797d55be494 195 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 2 195 44.137 T 23-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 RD1_RS16355 fe4334ced470e3552343c797d55be494 195 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 156 168 - T 23-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 RD1_RS10930 b80b27e83bf84fde8185533ccf2f0532 274 SUPERFAMILY SSF46785 3 69 1.42E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS10930 b80b27e83bf84fde8185533ccf2f0532 274 SUPERFAMILY SSF55781 65 244 5.1E-31 T 23-04-2016 IPR029016 GAF domain-like RD1_RS10930 b80b27e83bf84fde8185533ccf2f0532 274 Pfam PF09339 IclR helix-turn-helix domain 3 49 6.9E-12 T 23-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RD1_RS10930 b80b27e83bf84fde8185533ccf2f0532 274 Gene3D G3DSA:3.30.450.40 74 244 2.1E-33 T 23-04-2016 IPR029016 GAF domain-like RD1_RS10930 b80b27e83bf84fde8185533ccf2f0532 274 Pfam PF01614 Bacterial transcriptional regulator 129 239 5.5E-18 T 23-04-2016 IPR014757 Transcription regulator IclR, C-terminal RD1_RS10930 b80b27e83bf84fde8185533ccf2f0532 274 SMART SM00346 3 90 1.0E-8 T 23-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RD1_RS10930 b80b27e83bf84fde8185533ccf2f0532 274 Gene3D G3DSA:1.10.10.10 3 61 1.1E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS10930 b80b27e83bf84fde8185533ccf2f0532 274 PANTHER PTHR30136 3 256 2.8E-40 T 23-04-2016 RD1_RS13440 c2184f4243a382a000d257a0000991ca 467 PANTHER PTHR11699:SF68 1 286 1.1E-29 T 23-04-2016 RD1_RS13440 c2184f4243a382a000d257a0000991ca 467 Pfam PF00171 Aldehyde dehydrogenase family 7 272 2.4E-24 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RD1_RS13440 c2184f4243a382a000d257a0000991ca 467 SUPERFAMILY SSF53720 7 446 4.32E-64 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS13440 c2184f4243a382a000d257a0000991ca 467 Gene3D G3DSA:3.40.605.10 8 228 2.4E-22 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RD1_RS13440 c2184f4243a382a000d257a0000991ca 467 Gene3D G3DSA:3.40.309.10 229 276 8.3E-21 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RD1_RS13440 c2184f4243a382a000d257a0000991ca 467 Gene3D G3DSA:3.40.309.10 312 402 8.3E-21 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RD1_RS13440 c2184f4243a382a000d257a0000991ca 467 PANTHER PTHR11699 1 286 1.1E-29 T 23-04-2016 RD1_RS06460 807c4dab81e23d45b9c41d373b3f80ba 203 PANTHER PTHR11019:SF112 113 147 6.0E-35 T 23-04-2016 RD1_RS06460 807c4dab81e23d45b9c41d373b3f80ba 203 PANTHER PTHR11019:SF112 4 95 6.0E-35 T 23-04-2016 RD1_RS06460 807c4dab81e23d45b9c41d373b3f80ba 203 Gene3D G3DSA:3.40.50.880 1 191 6.1E-42 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS06460 807c4dab81e23d45b9c41d373b3f80ba 203 PANTHER PTHR11019 113 147 6.0E-35 T 23-04-2016 RD1_RS06460 807c4dab81e23d45b9c41d373b3f80ba 203 PANTHER PTHR11019 4 95 6.0E-35 T 23-04-2016 RD1_RS06460 807c4dab81e23d45b9c41d373b3f80ba 203 SUPERFAMILY SSF52317 3 189 4.14E-40 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS06460 807c4dab81e23d45b9c41d373b3f80ba 203 Pfam PF01965 DJ-1/PfpI family 4 186 4.3E-38 T 23-04-2016 IPR002818 DJ-1/PfpI RD1_RS14500 84d415fdc288013bdc2cd96ca3d1ee73 68 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 3.0E-24 T 23-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RD1_RS14500 84d415fdc288013bdc2cd96ca3d1ee73 68 Pfam PF01783 Ribosomal L32p protein family 2 55 2.2E-24 T 23-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RD1_RS14500 84d415fdc288013bdc2cd96ca3d1ee73 68 SUPERFAMILY SSF57829 1 55 1.1E-20 T 23-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 RD1_RS14500 84d415fdc288013bdc2cd96ca3d1ee73 68 PANTHER PTHR35534 1 61 5.1E-19 T 23-04-2016 RD1_RS14500 84d415fdc288013bdc2cd96ca3d1ee73 68 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 55 19.329 T 23-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 PANTHER PTHR24078:SF231 1 370 6.4E-150 T 23-04-2016 RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 23-04-2016 IPR018253 DnaJ domain, conserved site RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 SUPERFAMILY SSF49493 123 178 4.45E-21 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 SUPERFAMILY SSF49493 222 276 4.45E-21 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 Gene3D G3DSA:2.60.260.20 265 343 2.8E-22 T 23-04-2016 RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 359 5.2E-131 T 23-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 PANTHER PTHR24078 1 370 6.4E-150 T 23-04-2016 RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 Gene3D G3DSA:2.10.230.10 151 219 1.0E-21 T 23-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 Gene3D G3DSA:2.60.260.20 220 262 3.2E-21 T 23-04-2016 RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 Gene3D G3DSA:2.60.260.20 118 150 3.2E-21 T 23-04-2016 RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 PRINTS PR00625 DnaJ domain signature 62 81 1.5E-29 T 23-04-2016 IPR001623 DnaJ domain RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 PRINTS PR00625 DnaJ domain signature 25 40 1.5E-29 T 23-04-2016 IPR001623 DnaJ domain RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 PRINTS PR00625 DnaJ domain signature 42 62 1.5E-29 T 23-04-2016 IPR001623 DnaJ domain RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 PRINTS PR00625 DnaJ domain signature 7 25 1.5E-29 T 23-04-2016 IPR001623 DnaJ domain RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 Pfam PF00226 DnaJ domain 5 67 7.0E-25 T 23-04-2016 IPR001623 DnaJ domain RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 SUPERFAMILY SSF49493 268 354 5.23E-22 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 Pfam PF01556 DnaJ C terminal domain 130 343 1.8E-40 T 23-04-2016 IPR002939 Chaperone DnaJ, C-terminal RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 Pfam PF00684 DnaJ central domain 156 216 7.0E-13 T 23-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 Gene3D G3DSA:1.10.287.110 1 110 7.4E-35 T 23-04-2016 IPR001623 DnaJ domain RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 SUPERFAMILY SSF46565 1 100 6.93E-33 T 23-04-2016 IPR001623 DnaJ domain RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 378 41.287 T 23-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 SUPERFAMILY SSF57938 143 220 2.09E-20 T 23-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RD1_RS01775 c07e7448869b23d0ffb1e467886385ce 384 SMART SM00271 4 62 6.8E-29 T 23-04-2016 IPR001623 DnaJ domain RD1_RS16995 a40d2e08a9000277be48be3c2914db0e 541 Pfam PF02734 DAK2 domain 380 538 2.5E-36 T 23-04-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 RD1_RS16995 a40d2e08a9000277be48be3c2914db0e 541 Gene3D G3DSA:3.40.50.10440 11 182 1.3E-67 T 23-04-2016 RD1_RS16995 a40d2e08a9000277be48be3c2914db0e 541 Pfam PF02733 Dak1 domain 35 321 2.7E-101 T 23-04-2016 IPR004006 DhaK domain GO:0004371|GO:0006071 RD1_RS16995 a40d2e08a9000277be48be3c2914db0e 541 SUPERFAMILY SSF101473 346 539 4.45E-45 T 23-04-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 RD1_RS16995 a40d2e08a9000277be48be3c2914db0e 541 SMART SM01120 378 539 5.5E-50 T 23-04-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 RD1_RS16995 a40d2e08a9000277be48be3c2914db0e 541 Gene3D G3DSA:3.30.1180.20 184 325 2.8E-36 T 23-04-2016 RD1_RS16995 a40d2e08a9000277be48be3c2914db0e 541 PANTHER PTHR28629 1 539 6.1E-197 T 23-04-2016 RD1_RS16995 a40d2e08a9000277be48be3c2914db0e 541 SUPERFAMILY SSF82549 1 324 1.23E-102 T 23-04-2016 RD1_RS16995 a40d2e08a9000277be48be3c2914db0e 541 PANTHER PTHR28629:SF4 1 539 6.1E-197 T 23-04-2016 RD1_RS08395 86a26cfedde6cc7525ac30cc54b36536 315 PANTHER PTHR11614:SF100 25 309 5.2E-49 T 23-04-2016 RD1_RS08395 86a26cfedde6cc7525ac30cc54b36536 315 SUPERFAMILY SSF53474 23 298 5.21E-28 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08395 86a26cfedde6cc7525ac30cc54b36536 315 Pfam PF12146 Serine aminopeptidase, S33 41 294 1.6E-38 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 RD1_RS08395 86a26cfedde6cc7525ac30cc54b36536 315 Gene3D G3DSA:3.40.50.1820 28 294 3.0E-23 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08395 86a26cfedde6cc7525ac30cc54b36536 315 PANTHER PTHR11614 25 309 5.2E-49 T 23-04-2016 RD1_RS18775 3123d6a487d8abd1d8b5bf87add72ba4 453 PANTHER PTHR33362 6 452 1.1E-77 T 23-04-2016 RD1_RS18775 3123d6a487d8abd1d8b5bf87add72ba4 453 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 6 442 1.2E-75 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS08670 8ee6ec74021e359bf33006f5447c48cb 159 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 13 35 - T 23-04-2016 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RD1_RS08670 8ee6ec74021e359bf33006f5447c48cb 159 SUPERFAMILY SSF53597 1 158 1.44E-46 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain RD1_RS08670 8ee6ec74021e359bf33006f5447c48cb 159 PIRSF PIRSF000194 1 159 4.2E-46 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RD1_RS08670 8ee6ec74021e359bf33006f5447c48cb 159 PRINTS PR00070 Dihydrofolate reductase signature 40 51 2.2E-14 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RD1_RS08670 8ee6ec74021e359bf33006f5447c48cb 159 PRINTS PR00070 Dihydrofolate reductase signature 27 35 2.2E-14 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RD1_RS08670 8ee6ec74021e359bf33006f5447c48cb 159 PRINTS PR00070 Dihydrofolate reductase signature 13 23 2.2E-14 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RD1_RS08670 8ee6ec74021e359bf33006f5447c48cb 159 PRINTS PR00070 Dihydrofolate reductase signature 91 105 2.2E-14 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RD1_RS08670 8ee6ec74021e359bf33006f5447c48cb 159 Gene3D G3DSA:3.40.430.10 1 158 7.7E-48 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain RD1_RS08670 8ee6ec74021e359bf33006f5447c48cb 159 PANTHER PTHR22778 1 141 1.5E-32 T 23-04-2016 RD1_RS08670 8ee6ec74021e359bf33006f5447c48cb 159 Pfam PF00186 Dihydrofolate reductase 1 148 6.5E-49 T 23-04-2016 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RD1_RS08670 8ee6ec74021e359bf33006f5447c48cb 159 PANTHER PTHR22778:SF16 1 141 1.5E-32 T 23-04-2016 RD1_RS00480 4b400421a28f1c38ef1c7a6740b69586 50 Gene3D G3DSA:1.20.5.250 10 49 6.9E-22 T 23-04-2016 RD1_RS00480 4b400421a28f1c38ef1c7a6740b69586 50 SUPERFAMILY SSF56918 3 49 2.62E-18 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RD1_RS00480 4b400421a28f1c38ef1c7a6740b69586 50 PIRSF PIRSF002900 1 50 8.7E-23 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RD1_RS00480 4b400421a28f1c38ef1c7a6740b69586 50 Pfam PF00556 Antenna complex alpha/beta subunit 14 49 1.5E-12 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RD1_RS00480 4b400421a28f1c38ef1c7a6740b69586 50 PRINTS PR00674 Light harvesting protein B chain signature 11 31 6.3E-13 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RD1_RS00480 4b400421a28f1c38ef1c7a6740b69586 50 PRINTS PR00674 Light harvesting protein B chain signature 31 48 6.3E-13 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RD1_RS00480 4b400421a28f1c38ef1c7a6740b69586 50 ProSitePatterns PS00969 Antenna complexes beta subunits signature. 16 47 - T 23-04-2016 IPR023623 Antenna complex, beta subunit, conserved site RD1_RS03775 db897a24cacfab2834d892986516b4d7 248 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 119 133 7.7E-7 T 23-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RD1_RS03775 db897a24cacfab2834d892986516b4d7 248 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 59 74 7.7E-7 T 23-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RD1_RS03775 db897a24cacfab2834d892986516b4d7 248 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 188 200 7.7E-7 T 23-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RD1_RS03775 db897a24cacfab2834d892986516b4d7 248 SUPERFAMILY SSF50494 34 219 8.66E-22 T 23-04-2016 IPR009003 Peptidase S1, PA clan RD1_RS03775 db897a24cacfab2834d892986516b4d7 248 Pfam PF00089 Trypsin 50 166 1.3E-10 T 23-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RD1_RS03775 db897a24cacfab2834d892986516b4d7 248 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 69 74 - T 23-04-2016 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 RD1_RS03775 db897a24cacfab2834d892986516b4d7 248 Gene3D G3DSA:2.40.10.10 49 143 1.4E-15 T 23-04-2016 RD1_RS10105 43cffb4b1ca8e9a5611e8e2b7f982e0f 292 PANTHER PTHR21631:SF12 1 292 2.1E-113 T 23-04-2016 RD1_RS10105 43cffb4b1ca8e9a5611e8e2b7f982e0f 292 PANTHER PTHR21631 1 292 2.1E-113 T 23-04-2016 RD1_RS10105 43cffb4b1ca8e9a5611e8e2b7f982e0f 292 SUPERFAMILY SSF51621 3 287 2.47E-87 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS10105 43cffb4b1ca8e9a5611e8e2b7f982e0f 292 Pfam PF13714 Phosphoenolpyruvate phosphomutase 8 255 8.1E-48 T 23-04-2016 RD1_RS10105 43cffb4b1ca8e9a5611e8e2b7f982e0f 292 Gene3D G3DSA:3.20.20.60 3 284 3.2E-85 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS08675 a533afe4541ac8969094f25c783d1d4b 68 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 23-04-2016 IPR019844 Cold-shock conserved site RD1_RS08675 a533afe4541ac8969094f25c783d1d4b 68 SUPERFAMILY SSF50249 1 65 2.36E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS08675 a533afe4541ac8969094f25c783d1d4b 68 PIRSF PIRSF002599 1 67 4.3E-22 T 23-04-2016 IPR012156 Cold shock, CspA GO:0003676 RD1_RS08675 a533afe4541ac8969094f25c783d1d4b 68 SMART SM00357 3 68 5.9E-20 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 RD1_RS08675 a533afe4541ac8969094f25c783d1d4b 68 Gene3D G3DSA:2.40.50.140 1 65 2.5E-25 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS08675 a533afe4541ac8969094f25c783d1d4b 68 PANTHER PTHR11544 1 60 4.8E-19 T 23-04-2016 RD1_RS08675 a533afe4541ac8969094f25c783d1d4b 68 PRINTS PR00050 Cold shock protein signature 4 19 2.6E-14 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS08675 a533afe4541ac8969094f25c783d1d4b 68 PRINTS PR00050 Cold shock protein signature 25 34 2.6E-14 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS08675 a533afe4541ac8969094f25c783d1d4b 68 PRINTS PR00050 Cold shock protein signature 40 58 2.6E-14 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS08675 a533afe4541ac8969094f25c783d1d4b 68 Pfam PF00313 'Cold-shock' DNA-binding domain 3 60 1.3E-22 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS16770 eb3593fd5303f49265ff377167b06c25 343 Gene3D G3DSA:3.40.190.10 267 335 5.8E-29 T 23-04-2016 RD1_RS16770 eb3593fd5303f49265ff377167b06c25 343 Gene3D G3DSA:3.40.190.10 32 112 5.8E-29 T 23-04-2016 RD1_RS16770 eb3593fd5303f49265ff377167b06c25 343 Gene3D G3DSA:3.40.190.10 129 266 6.8E-24 T 23-04-2016 RD1_RS16770 eb3593fd5303f49265ff377167b06c25 343 Pfam PF16868 NMT1-like family 69 334 4.3E-38 T 23-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RD1_RS16770 eb3593fd5303f49265ff377167b06c25 343 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 15 334 3.1E-41 T 23-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RD1_RS16770 eb3593fd5303f49265ff377167b06c25 343 PANTHER PTHR30024:SF5 53 338 1.2E-21 T 23-04-2016 RD1_RS16770 eb3593fd5303f49265ff377167b06c25 343 PANTHER PTHR30024 53 338 1.2E-21 T 23-04-2016 RD1_RS16770 eb3593fd5303f49265ff377167b06c25 343 SUPERFAMILY SSF53850 32 335 2.05E-48 T 23-04-2016 RD1_RS15460 d88f5f9e8146fecd7629cf35cffe4d38 330 SUPERFAMILY SSF53335 12 113 1.96E-42 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS15460 d88f5f9e8146fecd7629cf35cffe4d38 330 SUPERFAMILY SSF53335 213 308 1.96E-42 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS15460 d88f5f9e8146fecd7629cf35cffe4d38 330 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 13 309 35.009 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS15460 d88f5f9e8146fecd7629cf35cffe4d38 330 PANTHER PTHR11265:SF0 13 311 3.0E-128 T 23-04-2016 RD1_RS15460 d88f5f9e8146fecd7629cf35cffe4d38 330 Gene3D G3DSA:1.10.150.170 112 215 3.7E-37 T 23-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS15460 d88f5f9e8146fecd7629cf35cffe4d38 330 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 11 307 1.9E-80 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS15460 d88f5f9e8146fecd7629cf35cffe4d38 330 PANTHER PTHR11265 13 311 3.0E-128 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS15460 d88f5f9e8146fecd7629cf35cffe4d38 330 Pfam PF01795 MraW methylase family 11 307 6.0E-85 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS15460 d88f5f9e8146fecd7629cf35cffe4d38 330 PIRSF PIRSF004486 7 310 7.7E-94 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS15460 d88f5f9e8146fecd7629cf35cffe4d38 330 Gene3D G3DSA:3.40.50.150 216 310 1.5E-39 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS15460 d88f5f9e8146fecd7629cf35cffe4d38 330 Gene3D G3DSA:3.40.50.150 13 110 1.5E-39 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS15460 d88f5f9e8146fecd7629cf35cffe4d38 330 SUPERFAMILY SSF81799 114 213 3.14E-35 T 23-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS11035 2f22d00ca0b995594235836020eb4cbd 438 PANTHER PTHR30043:SF5 240 438 3.9E-67 T 23-04-2016 RD1_RS11035 2f22d00ca0b995594235836020eb4cbd 438 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 260 428 7.1E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11035 2f22d00ca0b995594235836020eb4cbd 438 PANTHER PTHR30043 240 438 3.9E-67 T 23-04-2016 RD1_RS11035 2f22d00ca0b995594235836020eb4cbd 438 SUPERFAMILY SSF161098 237 424 2.49E-31 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11035 2f22d00ca0b995594235836020eb4cbd 438 Gene3D G3DSA:1.10.3720.10 236 432 2.2E-26 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11035 2f22d00ca0b995594235836020eb4cbd 438 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 218 432 1.6E-66 T 23-04-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 RD1_RS03925 5bd8a77810cd9dac38682e8e79a151ab 239 Gene3D G3DSA:1.20.120.530 86 219 3.6E-28 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS03925 5bd8a77810cd9dac38682e8e79a151ab 239 SMART SM00895 92 215 7.2E-19 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS03925 5bd8a77810cd9dac38682e8e79a151ab 239 Gene3D G3DSA:1.10.10.10 22 83 3.5E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03925 5bd8a77810cd9dac38682e8e79a151ab 239 PANTHER PTHR11751 24 108 1.4E-15 T 23-04-2016 RD1_RS03925 5bd8a77810cd9dac38682e8e79a151ab 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 82 1.6E-12 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS03925 5bd8a77810cd9dac38682e8e79a151ab 239 SMART SM00345 24 82 9.2E-7 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS03925 5bd8a77810cd9dac38682e8e79a151ab 239 SUPERFAMILY SSF46785 23 106 5.32E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03925 5bd8a77810cd9dac38682e8e79a151ab 239 SUPERFAMILY SSF48008 89 217 2.62E-25 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS03925 5bd8a77810cd9dac38682e8e79a151ab 239 Pfam PF07729 FCD domain 92 214 4.0E-22 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS14465 3f34c15210348aa45e801fe351dcda0f 416 Gene3D G3DSA:3.10.290.10 322 415 1.9E-20 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RD1_RS14465 3f34c15210348aa45e801fe351dcda0f 416 Gene3D G3DSA:3.40.50.620 5 239 1.6E-94 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS14465 3f34c15210348aa45e801fe351dcda0f 416 SUPERFAMILY SSF55174 312 413 4.71E-12 T 23-04-2016 RD1_RS14465 3f34c15210348aa45e801fe351dcda0f 416 SUPERFAMILY SSF52374 8 325 1.88E-93 T 23-04-2016 RD1_RS14465 3f34c15210348aa45e801fe351dcda0f 416 Gene3D G3DSA:1.10.240.10 240 321 7.5E-37 T 23-04-2016 RD1_RS14465 3f34c15210348aa45e801fe351dcda0f 416 Pfam PF00579 tRNA synthetases class I (W and Y) 39 328 2.8E-72 T 23-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS14465 3f34c15210348aa45e801fe351dcda0f 416 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 223 235 5.0E-27 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RD1_RS14465 3f34c15210348aa45e801fe351dcda0f 416 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 190 212 5.0E-27 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RD1_RS14465 3f34c15210348aa45e801fe351dcda0f 416 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 49 71 5.0E-27 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RD1_RS14465 3f34c15210348aa45e801fe351dcda0f 416 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 169 184 5.0E-27 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RD1_RS14465 3f34c15210348aa45e801fe351dcda0f 416 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 26 414 2.0E-103 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RD1_RS14465 3f34c15210348aa45e801fe351dcda0f 416 PANTHER PTHR11766 8 414 4.7E-165 T 23-04-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 RD1_RS14465 3f34c15210348aa45e801fe351dcda0f 416 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 7 415 42.095 T 23-04-2016 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 RD1_RS13515 93d484a6f387c45993cd2f4bd802ec8d 358 SUPERFAMILY SSF50331 238 357 1.05E-14 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS13515 93d484a6f387c45993cd2f4bd802ec8d 358 PANTHER PTHR24220:SF151 5 308 1.1E-150 T 23-04-2016 RD1_RS13515 93d484a6f387c45993cd2f4bd802ec8d 358 Pfam PF00005 ABC transporter 22 162 2.2E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS13515 93d484a6f387c45993cd2f4bd802ec8d 358 PANTHER PTHR24220 5 308 1.1E-150 T 23-04-2016 RD1_RS13515 93d484a6f387c45993cd2f4bd802ec8d 358 Gene3D G3DSA:3.40.50.300 4 235 3.5E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13515 93d484a6f387c45993cd2f4bd802ec8d 358 SMART SM00382 29 214 5.6E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS13515 93d484a6f387c45993cd2f4bd802ec8d 358 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS13515 93d484a6f387c45993cd2f4bd802ec8d 358 Gene3D G3DSA:2.40.50.140 276 342 9.1E-5 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS13515 93d484a6f387c45993cd2f4bd802ec8d 358 SUPERFAMILY SSF52540 4 244 1.31E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03540 d04b2273b3da21bb01584f1403552d39 315 SMART SM00382 29 219 2.9E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS03540 d04b2273b3da21bb01584f1403552d39 315 PANTHER PTHR24220 6 308 2.0E-84 T 23-04-2016 RD1_RS03540 d04b2273b3da21bb01584f1403552d39 315 PANTHER PTHR24220:SF193 6 308 2.0E-84 T 23-04-2016 RD1_RS03540 d04b2273b3da21bb01584f1403552d39 315 Gene3D G3DSA:3.40.50.300 2 231 7.2E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03540 d04b2273b3da21bb01584f1403552d39 315 SUPERFAMILY SSF52540 6 224 1.96E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03540 d04b2273b3da21bb01584f1403552d39 315 Pfam PF00005 ABC transporter 21 163 5.8E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 PANTHER PTHR11573 9 579 4.5E-230 T 23-04-2016 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 PANTHER PTHR11573 654 832 4.5E-230 T 23-04-2016 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 160 179 1.4E-24 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 366 389 1.4E-24 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 338 360 1.4E-24 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 421 448 1.4E-24 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 300 323 1.4E-24 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 9 79 6.8E-7 T 23-04-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 Pfam PF01381 Helix-turn-helix 582 632 7.1E-6 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 SUPERFAMILY SSF51998 421 570 1.06E-174 T 23-04-2016 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 SUPERFAMILY SSF51998 4 386 1.06E-174 T 23-04-2016 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 SMART SM00530 578 633 3.3E-5 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 Pfam PF02867 Ribonucleotide reductase, barrel domain 85 551 5.9E-143 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 SUPERFAMILY SSF47413 578 636 3.66E-6 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 PANTHER PTHR11573:SF3 9 579 4.5E-230 T 23-04-2016 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 PANTHER PTHR11573:SF3 654 832 4.5E-230 T 23-04-2016 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 11 559 1.5E-176 T 23-04-2016 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 Gene3D G3DSA:1.10.260.40 576 635 6.9E-10 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 Gene3D G3DSA:3.20.70.20 421 467 8.0E-147 T 23-04-2016 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 Gene3D G3DSA:3.20.70.20 510 553 8.0E-147 T 23-04-2016 RD1_RS18575 d3ac2b190cb31088cb3171d84c24e3f8 832 Gene3D G3DSA:3.20.70.20 3 386 8.0E-147 T 23-04-2016 RD1_RS04810 a6b8979245d763cc812de9db96808f36 113 PANTHER PTHR11803 12 113 6.1E-28 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family RD1_RS04810 a6b8979245d763cc812de9db96808f36 113 Pfam PF01042 Endoribonuclease L-PSP 12 110 5.3E-22 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family RD1_RS04810 a6b8979245d763cc812de9db96808f36 113 Gene3D G3DSA:3.30.1330.40 11 110 4.2E-22 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RD1_RS04810 a6b8979245d763cc812de9db96808f36 113 SUPERFAMILY SSF55298 10 112 6.91E-28 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RD1_RS12185 cb46d6c3bcda802c2c469fc817b8432a 229 SUPERFAMILY SSF52172 4 129 8.54E-44 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS12185 cb46d6c3bcda802c2c469fc817b8432a 229 PANTHER PTHR26402 6 226 2.6E-91 T 23-04-2016 RD1_RS12185 cb46d6c3bcda802c2c469fc817b8432a 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 6 228 3.9E-105 T 23-04-2016 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 RD1_RS12185 cb46d6c3bcda802c2c469fc817b8432a 229 SMART SM00862 153 228 3.5E-28 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS12185 cb46d6c3bcda802c2c469fc817b8432a 229 Pfam PF00072 Response regulator receiver domain 8 120 1.6E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS12185 cb46d6c3bcda802c2c469fc817b8432a 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 228 4.1E-26 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS12185 cb46d6c3bcda802c2c469fc817b8432a 229 Gene3D G3DSA:1.10.10.10 133 228 1.0E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS12185 cb46d6c3bcda802c2c469fc817b8432a 229 SMART SM00448 6 119 1.6E-45 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS12185 cb46d6c3bcda802c2c469fc817b8432a 229 Gene3D G3DSA:3.40.50.2300 3 127 3.1E-43 T 23-04-2016 RD1_RS12185 cb46d6c3bcda802c2c469fc817b8432a 229 SUPERFAMILY SSF46894 131 228 2.27E-30 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RD1_RS12185 cb46d6c3bcda802c2c469fc817b8432a 229 PANTHER PTHR26402:SF576 6 226 2.6E-91 T 23-04-2016 RD1_RS08750 09cc83e2ecbf7a7b92d12ecf0c118d94 452 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 251 266 - T 23-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS08750 09cc83e2ecbf7a7b92d12ecf0c118d94 452 PANTHER PTHR20852 14 452 4.8E-168 T 23-04-2016 RD1_RS08750 09cc83e2ecbf7a7b92d12ecf0c118d94 452 Gene3D G3DSA:3.30.590.10 119 438 4.2E-94 T 23-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 RD1_RS08750 09cc83e2ecbf7a7b92d12ecf0c118d94 452 SMART SM01230 115 371 3.9E-110 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS08750 09cc83e2ecbf7a7b92d12ecf0c118d94 452 Pfam PF00120 Glutamine synthetase, catalytic domain 117 447 5.0E-102 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS08750 09cc83e2ecbf7a7b92d12ecf0c118d94 452 Gene3D G3DSA:3.10.20.70 11 118 5.0E-18 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS08750 09cc83e2ecbf7a7b92d12ecf0c118d94 452 PANTHER PTHR20852:SF63 14 452 4.8E-168 T 23-04-2016 RD1_RS08750 09cc83e2ecbf7a7b92d12ecf0c118d94 452 SUPERFAMILY SSF55931 115 449 1.47E-107 T 23-04-2016 RD1_RS08750 09cc83e2ecbf7a7b92d12ecf0c118d94 452 SUPERFAMILY SSF54368 10 115 2.49E-19 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS05285 18dd439828f9b711bf5e8edc2181cff7 368 Pfam PF13186 Iron-sulfur cluster-binding domain 237 303 1.5E-8 T 23-04-2016 IPR023885 4Fe4S-binding SPASM domain RD1_RS05285 18dd439828f9b711bf5e8edc2181cff7 368 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 368 181.563 T 23-04-2016 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 UniPathway: UPA00539 RD1_RS05285 18dd439828f9b711bf5e8edc2181cff7 368 SUPERFAMILY SSF102114 7 312 1.96E-68 T 23-04-2016 RD1_RS05285 18dd439828f9b711bf5e8edc2181cff7 368 PANTHER PTHR11228:SF32 5 340 1.4E-101 T 23-04-2016 RD1_RS05285 18dd439828f9b711bf5e8edc2181cff7 368 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 240 330 2.9E-9 T 23-04-2016 IPR023885 4Fe4S-binding SPASM domain RD1_RS05285 18dd439828f9b711bf5e8edc2181cff7 368 PIRSF PIRSF037420 2 350 4.4E-113 T 23-04-2016 IPR017200 Coenzyme PQQ synthesis protein E UniPathway: UPA00539 RD1_RS05285 18dd439828f9b711bf5e8edc2181cff7 368 SMART SM00729 7 211 0.0039 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RD1_RS05285 18dd439828f9b711bf5e8edc2181cff7 368 Gene3D G3DSA:3.20.20.70 6 320 5.7E-68 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS05285 18dd439828f9b711bf5e8edc2181cff7 368 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 13 24 - T 23-04-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS05285 18dd439828f9b711bf5e8edc2181cff7 368 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 4 357 1.5E-169 T 23-04-2016 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 UniPathway: UPA00539 RD1_RS05285 18dd439828f9b711bf5e8edc2181cff7 368 Pfam PF13353 4Fe-4S single cluster domain 14 92 5.5E-6 T 23-04-2016 RD1_RS05285 18dd439828f9b711bf5e8edc2181cff7 368 PANTHER PTHR11228 5 340 1.4E-101 T 23-04-2016 RD1_RS05285 18dd439828f9b711bf5e8edc2181cff7 368 Pfam PF04055 Radical SAM superfamily 13 156 1.4E-22 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RD1_RS04780 77d2fc867dba5dfb063bff54d17a5a38 68 ProSitePatterns PS01181 Ribosomal protein S21 signature. 11 23 - T 23-04-2016 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS04780 77d2fc867dba5dfb063bff54d17a5a38 68 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 1 56 1.1E-18 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RD1_RS04780 77d2fc867dba5dfb063bff54d17a5a38 68 PANTHER PTHR21109:SF3 1 68 3.0E-32 T 23-04-2016 RD1_RS04780 77d2fc867dba5dfb063bff54d17a5a38 68 PANTHER PTHR21109 1 68 3.0E-32 T 23-04-2016 RD1_RS04780 77d2fc867dba5dfb063bff54d17a5a38 68 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 55 13.138 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RD1_RS04780 77d2fc867dba5dfb063bff54d17a5a38 68 Pfam PF01165 Ribosomal protein S21 2 55 2.5E-20 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RD1_RS04780 77d2fc867dba5dfb063bff54d17a5a38 68 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 13 40 7.0E-9 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RD1_RS05190 b0946673a258714d293d4a94ce2683eb 268 PANTHER PTHR23416 9 248 2.9E-96 T 23-04-2016 RD1_RS05190 b0946673a258714d293d4a94ce2683eb 268 Gene3D G3DSA:1.10.3130.10 12 144 4.7E-33 T 23-04-2016 RD1_RS05190 b0946673a258714d293d4a94ce2683eb 268 SMART SM00971 13 117 1.6E-38 T 23-04-2016 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 RD1_RS05190 b0946673a258714d293d4a94ce2683eb 268 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 206 234 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RD1_RS05190 b0946673a258714d293d4a94ce2683eb 268 Gene3D G3DSA:2.160.10.10 147 254 3.4E-31 T 23-04-2016 RD1_RS05190 b0946673a258714d293d4a94ce2683eb 268 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 86 246 1.2E-63 T 23-04-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 RD1_RS05190 b0946673a258714d293d4a94ce2683eb 268 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 198 231 1.5E-6 T 23-04-2016 IPR001451 Hexapeptide repeat RD1_RS05190 b0946673a258714d293d4a94ce2683eb 268 PANTHER PTHR23416:SF2 9 248 2.9E-96 T 23-04-2016 RD1_RS05190 b0946673a258714d293d4a94ce2683eb 268 SUPERFAMILY SSF51161 13 248 3.33E-54 T 23-04-2016 IPR011004 Trimeric LpxA-like RD1_RS05190 b0946673a258714d293d4a94ce2683eb 268 Pfam PF06426 Serine acetyltransferase, N-terminal 14 116 4.1E-23 T 23-04-2016 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 RD1_RS15305 524db9dafdd7785a354f5fb79db02448 503 Pfam PF02934 GatB/GatE catalytic domain 23 316 8.2E-109 T 23-04-2016 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 RD1_RS15305 524db9dafdd7785a354f5fb79db02448 503 SUPERFAMILY SSF89095 325 430 9.94E-33 T 23-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 RD1_RS15305 524db9dafdd7785a354f5fb79db02448 503 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 19 501 1.7E-155 T 23-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RD1_RS15305 524db9dafdd7785a354f5fb79db02448 503 Pfam PF02637 GatB domain 357 501 5.8E-48 T 23-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 RD1_RS15305 524db9dafdd7785a354f5fb79db02448 503 SUPERFAMILY SSF55931 22 324 1.31E-109 T 23-04-2016 RD1_RS15305 524db9dafdd7785a354f5fb79db02448 503 SMART SM00845 356 501 8.2E-79 T 23-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 RD1_RS15305 524db9dafdd7785a354f5fb79db02448 503 PANTHER PTHR11659 18 503 3.9E-239 T 23-04-2016 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E GO:0016884 RD1_RS15305 524db9dafdd7785a354f5fb79db02448 503 Gene3D G3DSA:1.10.10.410 447 502 5.1E-5 T 23-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal RD1_RS15305 524db9dafdd7785a354f5fb79db02448 503 PANTHER PTHR11659:SF0 18 503 3.9E-239 T 23-04-2016 RD1_RS15305 524db9dafdd7785a354f5fb79db02448 503 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 162 176 - T 23-04-2016 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 RD1_RS15305 524db9dafdd7785a354f5fb79db02448 503 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 20 502 35.879 T 23-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RD1_RS09440 e25156be143de34d81814ac4e9cfca39 226 Gene3D G3DSA:1.10.3680.10 27 162 3.3E-29 T 23-04-2016 IPR029024 TerB-like RD1_RS09440 e25156be143de34d81814ac4e9cfca39 226 Pfam PF05099 Tellurite resistance protein TerB 18 152 2.4E-40 T 23-04-2016 IPR007791 Co-chaperone DjlA, N-terminal RD1_RS09440 e25156be143de34d81814ac4e9cfca39 226 SMART SM00271 161 226 6.4E-8 T 23-04-2016 IPR001623 DnaJ domain RD1_RS09440 e25156be143de34d81814ac4e9cfca39 226 SUPERFAMILY SSF46565 151 221 1.35E-14 T 23-04-2016 IPR001623 DnaJ domain RD1_RS09440 e25156be143de34d81814ac4e9cfca39 226 SUPERFAMILY SSF158682 22 173 7.32E-31 T 23-04-2016 IPR029024 TerB-like RD1_RS09440 e25156be143de34d81814ac4e9cfca39 226 Gene3D G3DSA:1.10.287.110 163 221 6.0E-11 T 23-04-2016 IPR001623 DnaJ domain RD1_RS09440 e25156be143de34d81814ac4e9cfca39 226 Pfam PF00226 DnaJ domain 162 219 4.2E-8 T 23-04-2016 IPR001623 DnaJ domain RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 Gene3D G3DSA:3.30.1360.120 587 645 6.8E-29 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 Gene3D G3DSA:3.30.1360.120 738 834 6.8E-29 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 314 338 4.2E-10 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 275 283 4.2E-10 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 167 189 4.2E-10 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 Gene3D G3DSA:3.30.70.1400 646 721 2.0E-21 T 23-04-2016 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 862 945 4.2E-10 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 PANTHER PTHR13847:SF189 633 890 5.4E-27 T 23-04-2016 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 SUPERFAMILY SSF51905 166 505 4.96E-28 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 Gene3D G3DSA:3.50.50.60 164 303 4.2E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 Gene3D G3DSA:3.50.50.60 338 464 4.2E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 167 441 4.1E-10 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 PIRSF PIRSF037980 1 975 0.0 T 23-04-2016 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 TIGRFAM TIGR01372 soxA: sarcosine oxidase, alpha subunit family 2 974 0.0 T 23-04-2016 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 SUPERFAMILY SSF103025 585 871 1.88E-76 T 23-04-2016 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 Pfam PF01571 Aminomethyltransferase folate-binding domain 592 855 2.0E-61 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 13 97 1.9E-25 T 23-04-2016 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 187 1.6E-7 T 23-04-2016 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 274 292 1.6E-7 T 23-04-2016 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 PANTHER PTHR13847:SF189 246 281 5.4E-27 T 23-04-2016 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 PANTHER PTHR13847:SF189 114 229 5.4E-27 T 23-04-2016 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 PANTHER PTHR13847 633 890 5.4E-27 T 23-04-2016 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 PANTHER PTHR13847 246 281 5.4E-27 T 23-04-2016 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 PANTHER PTHR13847 114 229 5.4E-27 T 23-04-2016 RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 SUPERFAMILY SSF101790 881 974 5.89E-12 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RD1_RS08255 087964e63c36d85b64f69d5a16cf0210 975 Gene3D G3DSA:2.40.30.110 879 971 1.2E-13 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS00295 0a7f28de7734fc3c3268c2eb0f9fca79 327 Gene3D G3DSA:3.40.50.720 2 227 1.8E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00295 0a7f28de7734fc3c3268c2eb0f9fca79 327 SUPERFAMILY SSF51735 1 257 3.89E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00295 0a7f28de7734fc3c3268c2eb0f9fca79 327 PANTHER PTHR12126 5 327 7.1E-94 T 23-04-2016 RD1_RS00295 0a7f28de7734fc3c3268c2eb0f9fca79 327 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 212 1.0E-16 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RD1_RS10945 12b15275034b9f921346881863437806 505 ProSitePatterns PS00211 ABC transporters family signature. 399 413 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS10945 12b15275034b9f921346881863437806 505 SMART SM00382 281 474 6.5E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS10945 12b15275034b9f921346881863437806 505 SMART SM00382 30 222 6.4E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS10945 12b15275034b9f921346881863437806 505 Gene3D G3DSA:3.40.50.300 273 479 1.3E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10945 12b15275034b9f921346881863437806 505 Gene3D G3DSA:3.40.50.300 5 225 1.0E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10945 12b15275034b9f921346881863437806 505 SUPERFAMILY SSF52540 5 224 1.95E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10945 12b15275034b9f921346881863437806 505 Pfam PF00005 ABC transporter 21 174 5.9E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS10945 12b15275034b9f921346881863437806 505 Pfam PF00005 ABC transporter 274 426 7.6E-22 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS10945 12b15275034b9f921346881863437806 505 PANTHER PTHR24220:SF308 7 381 3.9E-109 T 23-04-2016 RD1_RS10945 12b15275034b9f921346881863437806 505 SUPERFAMILY SSF52540 272 477 5.01E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10945 12b15275034b9f921346881863437806 505 PANTHER PTHR24220 7 381 3.9E-109 T 23-04-2016 RD1_RS02890 886a19819239d2ec3d3bf4771a3086cb 155 SUPERFAMILY SSF49764 33 138 1.57E-20 T 23-04-2016 IPR008978 HSP20-like chaperone RD1_RS02890 886a19819239d2ec3d3bf4771a3086cb 155 PANTHER PTHR11527 1 146 1.4E-49 T 23-04-2016 IPR031107 Small heat shock protein HSP20 RD1_RS02890 886a19819239d2ec3d3bf4771a3086cb 155 Pfam PF00011 Hsp20/alpha crystallin family 45 138 3.8E-18 T 23-04-2016 IPR002068 Alpha crystallin/Hsp20 domain RD1_RS02890 886a19819239d2ec3d3bf4771a3086cb 155 Gene3D G3DSA:2.60.40.790 4 139 6.0E-17 T 23-04-2016 IPR008978 HSP20-like chaperone RD1_RS02890 886a19819239d2ec3d3bf4771a3086cb 155 PANTHER PTHR11527:SF145 1 146 1.4E-49 T 23-04-2016 RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 SUPERFAMILY SSF50447 725 821 6.86E-30 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 PANTHER PTHR23115:SF184 677 821 1.1E-191 T 23-04-2016 RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 PANTHER PTHR23115:SF184 302 651 1.1E-191 T 23-04-2016 RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 240 823 4.3E-240 T 23-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 247 295 2.8E-13 T 23-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 Gene3D G3DSA:3.40.50.10050 624 702 1.1E-24 T 23-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 SUPERFAMILY SSF52156 614 730 8.37E-34 T 23-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 Gene3D G3DSA:2.40.30.10 725 821 1.9E-33 T 23-04-2016 RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 Gene3D G3DSA:3.40.50.300 314 482 1.1E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 Pfam PF00009 Elongation factor Tu GTP binding domain 326 483 2.4E-31 T 23-04-2016 RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 PANTHER PTHR23115 677 821 1.1E-191 T 23-04-2016 RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 PANTHER PTHR23115 302 651 1.1E-191 T 23-04-2016 RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 SUPERFAMILY SSF50447 494 577 1.02E-25 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 Gene3D G3DSA:2.40.30.10 493 587 1.2E-24 T 23-04-2016 RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 323 478 9.7E-31 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 ProSitePatterns PS01176 Initiation factor 2 signature. 774 796 - T 23-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 Pfam PF11987 Translation-initiation factor 2 608 713 4.4E-37 T 23-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 SUPERFAMILY SSF52540 309 495 7.4E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 21 821 16.844 T 23-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RD1_RS01800 003ae878c6a6021de6a66319c291a9dc 824 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 8 46 1.0E-7 T 23-04-2016 IPR013575 Initiation factor 2 associated domain, bacterial RD1_RS15420 efe19d5503c3496b30be4f46fd1cca5b 389 PANTHER PTHR30474:SF2 5 389 2.7E-88 T 23-04-2016 RD1_RS15420 efe19d5503c3496b30be4f46fd1cca5b 389 Pfam PF01098 Cell cycle protein 31 372 7.2E-70 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RD1_RS15420 efe19d5503c3496b30be4f46fd1cca5b 389 PANTHER PTHR30474 5 389 2.7E-88 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RD1_RS15420 efe19d5503c3496b30be4f46fd1cca5b 389 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 26 373 1.3E-103 T 23-04-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 RD1_RS15270 49206a5a9a636fe007655ec0dce9c91d 715 PANTHER PTHR21631 491 713 4.7E-131 T 23-04-2016 RD1_RS15270 49206a5a9a636fe007655ec0dce9c91d 715 PANTHER PTHR21631 29 41 4.7E-131 T 23-04-2016 RD1_RS15270 49206a5a9a636fe007655ec0dce9c91d 715 Hamap MF_00641 Malate synthase G [glcB]. 1 715 368.259 T 23-04-2016 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RD1_RS15270 49206a5a9a636fe007655ec0dce9c91d 715 SUPERFAMILY SSF51645 4 712 4.58E-290 T 23-04-2016 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RD1_RS15270 49206a5a9a636fe007655ec0dce9c91d 715 Gene3D G3DSA:1.20.1220.12 581 713 1.2E-70 T 23-04-2016 RD1_RS15270 49206a5a9a636fe007655ec0dce9c91d 715 PANTHER PTHR21631:SF7 491 713 4.7E-131 T 23-04-2016 RD1_RS15270 49206a5a9a636fe007655ec0dce9c91d 715 PANTHER PTHR21631:SF7 29 41 4.7E-131 T 23-04-2016 RD1_RS15270 49206a5a9a636fe007655ec0dce9c91d 715 Pfam PF01274 Malate synthase 18 673 3.8E-165 T 23-04-2016 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RD1_RS15270 49206a5a9a636fe007655ec0dce9c91d 715 Gene3D G3DSA:1.10.1860.10 1 88 2.8E-32 T 23-04-2016 RD1_RS15270 49206a5a9a636fe007655ec0dce9c91d 715 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 7 712 0.0 T 23-04-2016 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RD1_RS15270 49206a5a9a636fe007655ec0dce9c91d 715 Gene3D G3DSA:3.20.20.360 258 288 1.3E-144 T 23-04-2016 RD1_RS15270 49206a5a9a636fe007655ec0dce9c91d 715 Gene3D G3DSA:3.20.20.360 89 135 1.3E-144 T 23-04-2016 RD1_RS15270 49206a5a9a636fe007655ec0dce9c91d 715 Gene3D G3DSA:3.20.20.360 328 578 1.3E-144 T 23-04-2016 RD1_RS15270 49206a5a9a636fe007655ec0dce9c91d 715 Gene3D G3DSA:2.170.170.11 136 256 4.8E-50 T 23-04-2016 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RD1_RS15270 49206a5a9a636fe007655ec0dce9c91d 715 Gene3D G3DSA:2.170.170.11 290 327 4.8E-50 T 23-04-2016 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 Gene3D G3DSA:3.30.1330.90 320 446 4.5E-41 T 23-04-2016 IPR029009 Allosteric substrate binding domain RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 SUPERFAMILY SSF52283 3 129 2.46E-38 T 23-04-2016 RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 146 173 - T 23-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 Pfam PF01842 ACT domain 456 516 2.5E-6 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 283 9.3E-64 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 4 524 2.5E-199 T 23-04-2016 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|UniPathway: UPA00135 RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 SUPERFAMILY SSF51735 102 284 5.65E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 Gene3D G3DSA:3.40.50.720 110 284 2.3E-69 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 315 4.3E-36 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 PANTHER PTHR10996 3 357 1.5E-164 T 23-04-2016 RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 SUPERFAMILY SSF55021 445 525 8.74E-16 T 23-04-2016 RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 Gene3D G3DSA:3.30.70.260 447 524 3.0E-15 T 23-04-2016 RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 PANTHER PTHR10996:SF20 3 357 1.5E-164 T 23-04-2016 RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 SUPERFAMILY SSF143548 321 450 9.15E-35 T 23-04-2016 IPR029009 Allosteric substrate binding domain RD1_RS00905 7d5c84f3bdaf603f240d3dce3a8502fd 531 Gene3D G3DSA:3.40.50.720 2 109 3.4E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15975 e23fb4cec0f091cfce27d5cbf7327907 346 Gene3D G3DSA:3.40.50.1100 99 341 4.8E-32 T 23-04-2016 RD1_RS15975 e23fb4cec0f091cfce27d5cbf7327907 346 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 42 340 6.9E-55 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS15975 e23fb4cec0f091cfce27d5cbf7327907 346 PANTHER PTHR10314 42 341 2.1E-50 T 23-04-2016 RD1_RS15975 e23fb4cec0f091cfce27d5cbf7327907 346 PANTHER PTHR10314:SF127 42 341 2.1E-50 T 23-04-2016 RD1_RS15975 e23fb4cec0f091cfce27d5cbf7327907 346 SUPERFAMILY SSF53686 40 336 4.58E-55 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS01100 635305346c3c651455152f8fd89f7d9c 171 Pfam PF13463 Winged helix DNA-binding domain 54 118 5.6E-19 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS01100 635305346c3c651455152f8fd89f7d9c 171 SUPERFAMILY SSF46785 24 161 3.66E-13 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS01100 635305346c3c651455152f8fd89f7d9c 171 Gene3D G3DSA:1.10.10.10 55 130 2.6E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS01100 635305346c3c651455152f8fd89f7d9c 171 PIRSF PIRSF036158 2 171 3.0E-65 T 23-04-2016 IPR014601 Transcriptional regulator with MarR-type HTH domain RD1_RS12710 7787774439e7e7a628063a6fc21611e9 155 PANTHER PTHR13939 1 155 4.4E-49 T 23-04-2016 RD1_RS12710 7787774439e7e7a628063a6fc21611e9 155 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 9 152 1.1E-41 T 23-04-2016 IPR008136 CinA, C-terminal RD1_RS12710 7787774439e7e7a628063a6fc21611e9 155 Pfam PF02464 Competence-damaged protein 2 153 2.7E-51 T 23-04-2016 IPR008136 CinA, C-terminal RD1_RS12710 7787774439e7e7a628063a6fc21611e9 155 SUPERFAMILY SSF142433 2 154 2.22E-49 T 23-04-2016 IPR008136 CinA, C-terminal RD1_RS12710 7787774439e7e7a628063a6fc21611e9 155 Gene3D G3DSA:3.90.950.20 2 154 4.2E-50 T 23-04-2016 IPR008136 CinA, C-terminal RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 SUPERFAMILY SSF50447 275 417 7.51E-37 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 Pfam PF14492 Elongation Factor G, domain II 417 490 2.2E-33 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 SUPERFAMILY SSF54980 616 702 6.23E-29 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 Gene3D G3DSA:3.40.50.300 7 296 1.1E-97 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 Gene3D G3DSA:3.30.70.240 612 698 2.0E-32 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 Pfam PF00009 Elongation factor Tu GTP binding domain 9 292 6.3E-66 T 23-04-2016 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 PANTHER PTHR23115 1 188 0.0 T 23-04-2016 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 PANTHER PTHR23115 265 293 0.0 T 23-04-2016 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 PANTHER PTHR23115 316 704 0.0 T 23-04-2016 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 PANTHER PTHR23115:SF66 1 188 0.0 T 23-04-2016 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 PANTHER PTHR23115:SF66 265 293 0.0 T 23-04-2016 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 PANTHER PTHR23115:SF66 316 704 0.0 T 23-04-2016 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 Gene3D G3DSA:3.30.230.10 497 611 1.3E-47 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 SUPERFAMILY SSF54980 415 493 2.12E-24 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 SMART SM00889 493 611 7.6E-67 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 Pfam PF03764 Elongation factor G, domain IV 492 610 1.3E-44 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 Gene3D G3DSA:3.30.70.870 418 493 5.7E-37 T 23-04-2016 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 Gene3D G3DSA:2.40.30.10 318 417 6.0E-38 T 23-04-2016 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 Pfam PF00679 Elongation factor G C-terminus 614 699 6.4E-29 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 Pfam PF03144 Elongation factor Tu domain 2 337 404 2.6E-18 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 SMART SM00838 613 700 2.2E-47 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.9E-16 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 PRINTS PR00315 GTP-binding elongation factor signature 141 150 2.9E-16 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 PRINTS PR00315 GTP-binding elongation factor signature 12 25 2.9E-16 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 PRINTS PR00315 GTP-binding elongation factor signature 89 99 2.9E-16 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 PRINTS PR00315 GTP-binding elongation factor signature 105 116 2.9E-16 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 SUPERFAMILY SSF52540 5 292 3.16E-100 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 703 0.0 T 23-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 190 9.4E-32 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 Hamap MF_00054_B Elongation factor G [fusA]. 6 704 106.323 T 23-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 RD1_RS18360 edbbb916e8dde4d5fdb477eede427d88 705 SUPERFAMILY SSF54211 492 611 9.1E-43 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS18455 3faedf7d83e68dab93ed85ed1efddc8b 202 SUPERFAMILY SSF101874 30 162 9.02E-14 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS18455 3faedf7d83e68dab93ed85ed1efddc8b 202 Gene3D G3DSA:2.40.128.110 30 145 1.3E-5 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS18455 3faedf7d83e68dab93ed85ed1efddc8b 202 PIRSF PIRSF029811 5 201 9.1E-64 T 23-04-2016 IPR027016 Uncharacterised protein with YceI domain RD1_RS18455 3faedf7d83e68dab93ed85ed1efddc8b 202 SMART SM00867 32 199 1.4E-4 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS18455 3faedf7d83e68dab93ed85ed1efddc8b 202 Pfam PF04264 YceI-like domain 33 146 1.6E-5 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS11050 79d4b1f9cd2c82517f95b538b641f17c 465 Gene3D G3DSA:2.30.40.10 4 67 1.2E-19 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS11050 79d4b1f9cd2c82517f95b538b641f17c 465 Gene3D G3DSA:3.20.20.140 68 380 2.5E-106 T 23-04-2016 RD1_RS11050 79d4b1f9cd2c82517f95b538b641f17c 465 SUPERFAMILY SSF51338 4 79 5.65E-11 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS11050 79d4b1f9cd2c82517f95b538b641f17c 465 Gene3D G3DSA:2.30.40.10 381 445 5.5E-11 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS11050 79d4b1f9cd2c82517f95b538b641f17c 465 SUPERFAMILY SSF51556 53 387 8.29E-100 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS11050 79d4b1f9cd2c82517f95b538b641f17c 465 SUPERFAMILY SSF51338 358 459 1.4E-30 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS11050 79d4b1f9cd2c82517f95b538b641f17c 465 Pfam PF01979 Amidohydrolase family 49 441 1.2E-28 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RD1_RS11050 79d4b1f9cd2c82517f95b538b641f17c 465 TIGRFAM TIGR02033 D-hydantoinase: dihydropyrimidinase 6 450 3.2E-151 T 23-04-2016 IPR011778 Hydantoinase/dihydropyrimidinase GO:0005737 Reactome: REACT_18266 RD1_RS11050 79d4b1f9cd2c82517f95b538b641f17c 465 PANTHER PTHR11647:SF1 1 458 9.1E-165 T 23-04-2016 RD1_RS11050 79d4b1f9cd2c82517f95b538b641f17c 465 PANTHER PTHR11647 1 458 9.1E-165 T 23-04-2016 RD1_RS03870 4e1827780b6513785559b0540016224d 366 SUPERFAMILY SSF53067 5 177 1.21E-52 T 23-04-2016 RD1_RS03870 4e1827780b6513785559b0540016224d 366 Gene3D G3DSA:3.30.420.40 5 185 3.9E-60 T 23-04-2016 RD1_RS03870 4e1827780b6513785559b0540016224d 366 Hamap MF_00542 Probable butyrate kinase [buk]. 1 366 121.088 T 23-04-2016 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 RD1_RS03870 4e1827780b6513785559b0540016224d 366 PANTHER PTHR21060 2 362 3.1E-116 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS03870 4e1827780b6513785559b0540016224d 366 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 184 201 - T 23-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS03870 4e1827780b6513785559b0540016224d 366 Pfam PF00871 Acetokinase family 6 338 4.5E-41 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS03870 4e1827780b6513785559b0540016224d 366 PIRSF PIRSF036458 2 360 3.8E-116 T 23-04-2016 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 RD1_RS03870 4e1827780b6513785559b0540016224d 366 PANTHER PTHR21060:SF3 2 362 3.1E-116 T 23-04-2016 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 RD1_RS03870 4e1827780b6513785559b0540016224d 366 Gene3D G3DSA:3.30.420.40 186 328 4.6E-35 T 23-04-2016 RD1_RS03870 4e1827780b6513785559b0540016224d 366 PRINTS PR00471 Acetate kinase family signature 278 291 3.3E-14 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS03870 4e1827780b6513785559b0540016224d 366 PRINTS PR00471 Acetate kinase family signature 301 317 3.3E-14 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS03870 4e1827780b6513785559b0540016224d 366 PRINTS PR00471 Acetate kinase family signature 6 17 3.3E-14 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS03870 4e1827780b6513785559b0540016224d 366 PRINTS PR00471 Acetate kinase family signature 184 205 3.3E-14 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS03870 4e1827780b6513785559b0540016224d 366 TIGRFAM TIGR02707 butyr_kinase: butyrate kinase 6 356 4.8E-113 T 23-04-2016 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 RD1_RS03870 4e1827780b6513785559b0540016224d 366 SUPERFAMILY SSF53067 122 351 9.13E-41 T 23-04-2016 RD1_RS14135 00f8c06ee1388f09bfc0919161e84575 456 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 8 241 2.4E-18 T 23-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RD1_RS14135 00f8c06ee1388f09bfc0919161e84575 456 Gene3D G3DSA:3.30.420.40 3 241 6.6E-19 T 23-04-2016 RD1_RS14135 00f8c06ee1388f09bfc0919161e84575 456 SUPERFAMILY SSF53067 6 241 1.81E-24 T 23-04-2016 RD1_RS14135 00f8c06ee1388f09bfc0919161e84575 456 PANTHER PTHR10196 1 266 5.3E-15 T 23-04-2016 RD1_RS01690 6295c2d4107b4466a996052a064ba169 454 PANTHER PTHR23519 1 448 2.6E-61 T 23-04-2016 RD1_RS01690 6295c2d4107b4466a996052a064ba169 454 Pfam PF11700 Vacuole effluxer Atg22 like 4 448 1.9E-32 T 23-04-2016 IPR024671 Autophagy-related protein 22-like RD1_RS01690 6295c2d4107b4466a996052a064ba169 454 Gene3D G3DSA:1.20.1250.20 47 219 2.4E-7 T 23-04-2016 RD1_RS01690 6295c2d4107b4466a996052a064ba169 454 Gene3D G3DSA:1.20.1250.20 254 449 5.4E-13 T 23-04-2016 RD1_RS01690 6295c2d4107b4466a996052a064ba169 454 SUPERFAMILY SSF103473 5 449 1.7E-31 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 Pfam PF00842 Alanine racemase, C-terminal domain 221 342 2.3E-32 T 23-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 PANTHER PTHR30511:SF0 1 342 4.2E-77 T 23-04-2016 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 30 40 - T 23-04-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 PRINTS PR00992 Alanine racemase signature 237 252 7.9E-31 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 PRINTS PR00992 Alanine racemase signature 25 41 7.9E-31 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 PRINTS PR00992 Alanine racemase signature 275 292 7.9E-31 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 PRINTS PR00992 Alanine racemase signature 119 131 7.9E-31 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 PRINTS PR00992 Alanine racemase signature 254 269 7.9E-31 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 PRINTS PR00992 Alanine racemase signature 61 79 7.9E-31 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 PRINTS PR00992 Alanine racemase signature 325 338 7.9E-31 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 PANTHER PTHR30511 1 342 4.2E-77 T 23-04-2016 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 Pfam PF01168 Alanine racemase, N-terminal domain 8 214 4.6E-49 T 23-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 SUPERFAMILY SSF50621 217 343 5.93E-38 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 SMART SM01005 221 343 1.9E-47 T 23-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 Hamap MF_01201 Alanine racemase. 1 343 27.201 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 SUPERFAMILY SSF51419 8 228 1.46E-55 T 23-04-2016 IPR029066 PLP-binding barrel RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 Gene3D G3DSA:2.40.37.10 207 343 3.0E-45 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 Gene3D G3DSA:3.20.20.10 10 206 6.2E-51 T 23-04-2016 IPR029066 PLP-binding barrel RD1_RS14875 0b6c4056ab574024738b85b086701fb7 344 TIGRFAM TIGR00492 alr: alanine racemase 4 342 5.5E-67 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RD1_RS02010 17496e95ad3aa7f7640d7578f7774017 199 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 15 177 8.2E-43 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RD1_RS02010 17496e95ad3aa7f7640d7578f7774017 199 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 3 199 26.37 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RD1_RS02010 17496e95ad3aa7f7640d7578f7774017 199 SUPERFAMILY SSF53335 5 175 5.7E-33 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS02010 17496e95ad3aa7f7640d7578f7774017 199 PIRSF PIRSF003078 2 196 9.5E-47 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RD1_RS02010 17496e95ad3aa7f7640d7578f7774017 199 Gene3D G3DSA:3.40.50.150 5 191 7.7E-53 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS02010 17496e95ad3aa7f7640d7578f7774017 199 PANTHER PTHR31760:SF0 5 171 3.4E-43 T 23-04-2016 RD1_RS02010 17496e95ad3aa7f7640d7578f7774017 199 Pfam PF02527 rRNA small subunit methyltransferase G 12 180 2.7E-45 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RD1_RS02010 17496e95ad3aa7f7640d7578f7774017 199 PANTHER PTHR31760 5 171 3.4E-43 T 23-04-2016 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 247 318 5.6E-10 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 SUPERFAMILY SSF54292 222 326 1.31E-21 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 Gene3D G3DSA:3.10.20.30 228 326 3.6E-22 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 PANTHER PTHR22924 16 282 6.4E-59 T 23-04-2016 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 Pfam PF00175 Oxidoreductase NAD-binding domain 125 214 1.1E-6 T 23-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 SUPERFAMILY SSF52343 110 241 2.49E-28 T 23-04-2016 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 SUPERFAMILY SSF63380 13 112 2.33E-22 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 275 283 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 PANTHER PTHR22924:SF20 16 282 6.4E-59 T 23-04-2016 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 Gene3D G3DSA:2.40.30.10 13 112 7.6E-26 T 23-04-2016 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 PRINTS PR00409 Phthalate dioxygenase reductase family signature 88 102 4.3E-31 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 PRINTS PR00409 Phthalate dioxygenase reductase family signature 102 116 4.3E-31 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 PRINTS PR00409 Phthalate dioxygenase reductase family signature 124 143 4.3E-31 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 PRINTS PR00409 Phthalate dioxygenase reductase family signature 200 208 4.3E-31 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 PRINTS PR00409 Phthalate dioxygenase reductase family signature 39 49 4.3E-31 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 PRINTS PR00409 Phthalate dioxygenase reductase family signature 149 158 4.3E-31 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RD1_RS00020 2f97281c31941a95063bfa90dee84e7f 328 Gene3D G3DSA:3.40.50.80 114 227 2.5E-27 T 23-04-2016 RD1_RS08980 9ad9fd8f8d24618fcb3d9cfc21fdd057 530 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 171 4.0E-44 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RD1_RS08980 9ad9fd8f8d24618fcb3d9cfc21fdd057 530 SUPERFAMILY SSF52467 187 351 1.02E-26 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS08980 9ad9fd8f8d24618fcb3d9cfc21fdd057 530 Gene3D G3DSA:3.40.50.970 374 525 3.0E-40 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS08980 9ad9fd8f8d24618fcb3d9cfc21fdd057 530 PANTHER PTHR18968:SF13 1 527 1.3E-95 T 23-04-2016 RD1_RS08980 9ad9fd8f8d24618fcb3d9cfc21fdd057 530 Gene3D G3DSA:3.40.50.1220 190 373 3.8E-29 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS08980 9ad9fd8f8d24618fcb3d9cfc21fdd057 530 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 378 524 6.9E-26 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RD1_RS08980 9ad9fd8f8d24618fcb3d9cfc21fdd057 530 SUPERFAMILY SSF52518 2 176 2.7E-40 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS08980 9ad9fd8f8d24618fcb3d9cfc21fdd057 530 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 321 1.0E-16 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RD1_RS08980 9ad9fd8f8d24618fcb3d9cfc21fdd057 530 PANTHER PTHR18968 1 527 1.3E-95 T 23-04-2016 RD1_RS08980 9ad9fd8f8d24618fcb3d9cfc21fdd057 530 SUPERFAMILY SSF52518 361 527 3.57E-40 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS08980 9ad9fd8f8d24618fcb3d9cfc21fdd057 530 Gene3D G3DSA:3.40.50.970 9 175 1.6E-46 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS07780 d309d329ed4080fcbfe2b2d6879f70d3 230 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 2 229 54.066 T 23-04-2016 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 RD1_RS07780 d309d329ed4080fcbfe2b2d6879f70d3 230 SUPERFAMILY SSF52467 2 224 2.25E-69 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS07780 d309d329ed4080fcbfe2b2d6879f70d3 230 PANTHER PTHR11085:SF17 2 221 1.6E-67 T 23-04-2016 RD1_RS07780 d309d329ed4080fcbfe2b2d6879f70d3 230 PANTHER PTHR11085 2 221 1.6E-67 T 23-04-2016 IPR003000 Sirtuin family GO:0070403 RD1_RS07780 d309d329ed4080fcbfe2b2d6879f70d3 230 Gene3D G3DSA:3.30.1600.10 108 151 2.2E-21 T 23-04-2016 IPR026591 Sirtuin family, catalytic core small domain RD1_RS07780 d309d329ed4080fcbfe2b2d6879f70d3 230 Gene3D G3DSA:3.30.1600.10 20 57 2.2E-21 T 23-04-2016 IPR026591 Sirtuin family, catalytic core small domain RD1_RS07780 d309d329ed4080fcbfe2b2d6879f70d3 230 Pfam PF02146 Sir2 family 9 179 1.5E-43 T 23-04-2016 IPR003000 Sirtuin family GO:0070403 RD1_RS07780 d309d329ed4080fcbfe2b2d6879f70d3 230 Gene3D G3DSA:3.40.50.1220 158 224 1.3E-39 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS07780 d309d329ed4080fcbfe2b2d6879f70d3 230 Gene3D G3DSA:3.40.50.1220 2 17 1.3E-39 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS07780 d309d329ed4080fcbfe2b2d6879f70d3 230 Gene3D G3DSA:3.40.50.1220 65 107 1.3E-39 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS01040 53c1a31549ff4d8c6eaf331a21185322 377 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 146 266 1.1E-7 T 23-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS01040 53c1a31549ff4d8c6eaf331a21185322 377 PANTHER PTHR22604:SF123 1 370 1.4E-61 T 23-04-2016 RD1_RS01040 53c1a31549ff4d8c6eaf331a21185322 377 SUPERFAMILY SSF55347 140 319 7.36E-34 T 23-04-2016 RD1_RS01040 53c1a31549ff4d8c6eaf331a21185322 377 SUPERFAMILY SSF51735 3 165 6.86E-40 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS01040 53c1a31549ff4d8c6eaf331a21185322 377 PANTHER PTHR22604 1 370 1.4E-61 T 23-04-2016 RD1_RS01040 53c1a31549ff4d8c6eaf331a21185322 377 Gene3D G3DSA:3.30.360.10 154 280 7.6E-36 T 23-04-2016 RD1_RS01040 53c1a31549ff4d8c6eaf331a21185322 377 Gene3D G3DSA:3.30.360.10 322 371 7.6E-36 T 23-04-2016 RD1_RS01040 53c1a31549ff4d8c6eaf331a21185322 377 Gene3D G3DSA:3.40.50.720 1 153 8.9E-40 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS01040 53c1a31549ff4d8c6eaf331a21185322 377 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 134 1.7E-26 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RD1_RS02245 c77bdca7a4de58fc3803d3dc12de1d71 270 PIRSF PIRSF036628 1 269 5.4E-110 T 23-04-2016 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30|UniPathway: UPA00076 RD1_RS02245 c77bdca7a4de58fc3803d3dc12de1d71 270 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 16 263 3.4E-102 T 23-04-2016 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30|UniPathway: UPA00076 RD1_RS02245 c77bdca7a4de58fc3803d3dc12de1d71 270 Gene3D G3DSA:2.60.120.10 120 268 7.7E-68 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS02245 c77bdca7a4de58fc3803d3dc12de1d71 270 PANTHER PTHR39193 2 267 9.8E-107 T 23-04-2016 RD1_RS02245 c77bdca7a4de58fc3803d3dc12de1d71 270 Gene3D G3DSA:2.60.120.10 14 119 9.6E-41 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS02245 c77bdca7a4de58fc3803d3dc12de1d71 270 PANTHER PTHR39193:SF1 2 267 9.8E-107 T 23-04-2016 RD1_RS02245 c77bdca7a4de58fc3803d3dc12de1d71 270 SUPERFAMILY SSF51182 9 252 2.19E-70 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS02245 c77bdca7a4de58fc3803d3dc12de1d71 270 Pfam PF04962 KduI/IolB family 6 263 8.3E-110 T 23-04-2016 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 RD1_RS00945 db9246f455cd41ca7c8c2acfdf47f9ed 258 PANTHER PTHR11941 1 255 9.1E-120 T 23-04-2016 RD1_RS00945 db9246f455cd41ca7c8c2acfdf47f9ed 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 257 7.7E-82 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RD1_RS00945 db9246f455cd41ca7c8c2acfdf47f9ed 258 PANTHER PTHR11941:SF54 1 255 9.1E-120 T 23-04-2016 RD1_RS00945 db9246f455cd41ca7c8c2acfdf47f9ed 258 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 99 119 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RD1_RS00945 db9246f455cd41ca7c8c2acfdf47f9ed 258 Gene3D G3DSA:3.90.226.10 1 256 1.2E-100 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS00945 db9246f455cd41ca7c8c2acfdf47f9ed 258 SUPERFAMILY SSF52096 1 258 9.37E-92 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 Gene3D G3DSA:3.30.1360.40 238 334 1.7E-39 T 23-04-2016 IPR024946 Arginine repressor C-terminal-like domain RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 Gene3D G3DSA:2.120.10.90 790 889 1.5E-104 T 23-04-2016 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 Gene3D G3DSA:2.120.10.90 523 739 1.5E-104 T 23-04-2016 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 SUPERFAMILY SSF101904 790 900 3.53E-88 T 23-04-2016 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 SUPERFAMILY SSF101904 526 740 3.53E-88 T 23-04-2016 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 4 895 27.228 T 23-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 SUPERFAMILY SSF56719 32 515 7.98E-178 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 531 578 3.1E-14 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 691 738 6.4E-11 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 843 887 1.3E-8 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 794 823 0.0084 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 583 630 0.001 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 642 675 0.0077 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 PANTHER PTHR10169:SF48 13 418 0.0 T 23-04-2016 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 PANTHER PTHR10169:SF48 443 738 0.0 T 23-04-2016 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 PANTHER PTHR10169:SF48 785 859 0.0 T 23-04-2016 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 PANTHER PTHR10169 13 418 0.0 T 23-04-2016 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 PANTHER PTHR10169 443 738 0.0 T 23-04-2016 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 PANTHER PTHR10169 785 859 0.0 T 23-04-2016 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 Gene3D G3DSA:3.90.199.10 36 218 3.5E-84 T 23-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 Gene3D G3DSA:1.10.268.10 365 489 8.2E-40 T 23-04-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 SMART SM00434 13 492 2.9E-278 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 13 889 0.0 T 23-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS12520 c78fa07e26937bb5f7f9bad803ae0af1 905 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 34 499 1.2E-150 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS15595 72e997a006a271a429d70942158bf1cf 246 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 111 117 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RD1_RS15595 72e997a006a271a429d70942158bf1cf 246 Gene3D G3DSA:3.40.50.150 29 237 2.4E-59 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS15595 72e997a006a271a429d70942158bf1cf 246 PANTHER PTHR18895 14 235 3.9E-30 T 23-04-2016 RD1_RS15595 72e997a006a271a429d70942158bf1cf 246 SUPERFAMILY SSF53335 32 225 1.15E-27 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS15595 72e997a006a271a429d70942158bf1cf 246 PANTHER PTHR18895:SF75 14 235 3.9E-30 T 23-04-2016 RD1_RS15595 72e997a006a271a429d70942158bf1cf 246 Pfam PF05175 Methyltransferase small domain 32 133 2.0E-10 T 23-04-2016 IPR007848 Methyltransferase small domain GO:0008168 RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 232 347 1.4E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 SMART SM00388 127 191 5.9E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 Gene3D G3DSA:1.10.287.130 131 182 1.4E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 PRINTS PR00344 Bacterial sensor protein C-terminal signature 301 311 1.5E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 PRINTS PR00344 Bacterial sensor protein C-terminal signature 312 330 1.5E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 PRINTS PR00344 Bacterial sensor protein C-terminal signature 283 297 1.5E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 Pfam PF08448 PAS fold 9 101 2.7E-5 T 23-04-2016 IPR013656 PAS fold-4 RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 SUPERFAMILY SSF55874 194 347 1.06E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 SUPERFAMILY SSF55785 264 293 2.09E-5 T 23-04-2016 IPR000014 PAS domain RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 SUPERFAMILY SSF55785 7 73 2.09E-5 T 23-04-2016 IPR000014 PAS domain RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 SUPERFAMILY SSF47384 131 187 1.0E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 Gene3D G3DSA:3.30.565.10 192 347 8.1E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 PANTHER PTHR24423 283 347 1.4E-58 T 23-04-2016 RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 PANTHER PTHR24423 5 264 1.4E-58 T 23-04-2016 RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 SMART SM00387 232 351 3.9E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 Gene3D G3DSA:3.30.450.20 6 105 3.1E-8 T 23-04-2016 RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 PANTHER PTHR24423:SF520 283 347 1.4E-58 T 23-04-2016 RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 PANTHER PTHR24423:SF520 5 264 1.4E-58 T 23-04-2016 RD1_RS12685 2f468594551b8851abf4d0379db25f78 359 Pfam PF00512 His Kinase A (phospho-acceptor) domain 132 186 6.5E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS15205 2deeefed72046f73ba3ffaee0df4b12a 356 SUPERFAMILY SSF53756 72 354 5.34E-67 T 23-04-2016 RD1_RS15205 2deeefed72046f73ba3ffaee0df4b12a 356 Pfam PF00534 Glycosyl transferases group 1 157 330 9.3E-37 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RD1_RS15205 2deeefed72046f73ba3ffaee0df4b12a 356 PANTHER PTHR12526 115 355 2.4E-56 T 23-04-2016 RD1_RS15205 2deeefed72046f73ba3ffaee0df4b12a 356 Gene3D G3DSA:3.40.50.2000 139 330 4.9E-39 T 23-04-2016 RD1_RS07030 47e407ba8c46c5931a20c9d642c0329d 234 Gene3D G3DSA:1.10.760.10 166 233 2.1E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07030 47e407ba8c46c5931a20c9d642c0329d 234 Gene3D G3DSA:1.10.760.10 26 130 1.4E-37 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07030 47e407ba8c46c5931a20c9d642c0329d 234 PANTHER PTHR11961 26 138 1.7E-34 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07030 47e407ba8c46c5931a20c9d642c0329d 234 PRINTS PR00604 Class IA and IB cytochrome C signature 119 127 7.0E-16 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07030 47e407ba8c46c5931a20c9d642c0329d 234 PRINTS PR00604 Class IA and IB cytochrome C signature 83 99 7.0E-16 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07030 47e407ba8c46c5931a20c9d642c0329d 234 PRINTS PR00604 Class IA and IB cytochrome C signature 102 112 7.0E-16 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07030 47e407ba8c46c5931a20c9d642c0329d 234 PRINTS PR00604 Class IA and IB cytochrome C signature 37 44 7.0E-16 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07030 47e407ba8c46c5931a20c9d642c0329d 234 PRINTS PR00604 Class IA and IB cytochrome C signature 50 65 7.0E-16 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07030 47e407ba8c46c5931a20c9d642c0329d 234 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 167 229 6.2E-5 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07030 47e407ba8c46c5931a20c9d642c0329d 234 SUPERFAMILY SSF46626 26 131 3.6E-32 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07030 47e407ba8c46c5931a20c9d642c0329d 234 Pfam PF00034 Cytochrome c 28 126 6.5E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07030 47e407ba8c46c5931a20c9d642c0329d 234 SUPERFAMILY SSF46626 153 233 5.91E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS12590 7658b21a95b3529d160fa45138a50a69 510 Gene3D G3DSA:3.30.300.30 406 504 3.6E-22 T 23-04-2016 RD1_RS12590 7658b21a95b3529d160fa45138a50a69 510 ProSitePatterns PS00455 Putative AMP-binding domain signature. 164 175 - T 23-04-2016 IPR020845 AMP-binding, conserved site RD1_RS12590 7658b21a95b3529d160fa45138a50a69 510 Gene3D G3DSA:2.30.38.10 329 401 7.1E-16 T 23-04-2016 RD1_RS12590 7658b21a95b3529d160fa45138a50a69 510 Pfam PF00501 AMP-binding enzyme 28 407 1.8E-68 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RD1_RS12590 7658b21a95b3529d160fa45138a50a69 510 PANTHER PTHR24095 19 506 2.5E-100 T 23-04-2016 RD1_RS12590 7658b21a95b3529d160fa45138a50a69 510 Pfam PF13193 AMP-binding enzyme C-terminal domain 417 490 4.2E-8 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RD1_RS12590 7658b21a95b3529d160fa45138a50a69 510 Gene3D G3DSA:3.40.50.980 28 170 6.8E-23 T 23-04-2016 RD1_RS12590 7658b21a95b3529d160fa45138a50a69 510 SUPERFAMILY SSF56801 17 502 3.92E-115 T 23-04-2016 RD1_RS12590 7658b21a95b3529d160fa45138a50a69 510 Gene3D G3DSA:3.40.50.980 171 328 9.8E-30 T 23-04-2016 RD1_RS04850 b1e0686810cfe98edb1e69b137185408 241 Pfam PF07729 FCD domain 95 212 1.7E-21 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS04850 b1e0686810cfe98edb1e69b137185408 241 Gene3D G3DSA:1.10.10.10 22 82 1.2E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04850 b1e0686810cfe98edb1e69b137185408 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 4.1E-5 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS04850 b1e0686810cfe98edb1e69b137185408 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 4.1E-5 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS04850 b1e0686810cfe98edb1e69b137185408 241 PANTHER PTHR11751:SF362 21 107 2.9E-23 T 23-04-2016 RD1_RS04850 b1e0686810cfe98edb1e69b137185408 241 Gene3D G3DSA:1.20.120.530 94 218 1.9E-23 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS04850 b1e0686810cfe98edb1e69b137185408 241 PANTHER PTHR11751 21 107 2.9E-23 T 23-04-2016 RD1_RS04850 b1e0686810cfe98edb1e69b137185408 241 SUPERFAMILY SSF46785 21 85 6.03E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04850 b1e0686810cfe98edb1e69b137185408 241 SMART SM00345 23 81 7.7E-17 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS04850 b1e0686810cfe98edb1e69b137185408 241 SUPERFAMILY SSF48008 93 218 6.02E-23 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS04850 b1e0686810cfe98edb1e69b137185408 241 SMART SM00895 91 213 1.3E-15 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS04850 b1e0686810cfe98edb1e69b137185408 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 26 81 1.0E-16 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 Gene3D G3DSA:2.20.25.90 53 99 1.3E-31 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 TIGRFAM TIGR01580 narG: nitrate reductase, alpha subunit 2 1236 0.0 T 23-04-2016 IPR006468 Nitrate reductase, alpha subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 Pfam PF00384 Molybdopterin oxidoreductase 109 834 5.9E-152 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 SMART SM00926 44 106 1.1E-7 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 PANTHER PTHR11615:SF165 698 837 0.0 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 PANTHER PTHR11615:SF165 853 877 0.0 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 PANTHER PTHR11615:SF165 35 413 0.0 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 PANTHER PTHR11615:SF165 995 1230 0.0 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 SUPERFAMILY SSF50692 1083 1237 4.07E-46 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 Gene3D G3DSA:3.40.50.740 143 205 6.9E-8 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 Pfam PF01568 Molydopterin dinucleotide binding domain 1088 1203 1.3E-22 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 Gene3D G3DSA:3.40.50.740 594 780 1.2E-65 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 Pfam PF14710 Respiratory nitrate reductase alpha N-terminal 3 41 3.4E-18 T 23-04-2016 IPR028189 Nitrate reductase, alpha subunit, N-terminal KEGG: 00910+1.7.99.4 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 778 795 - T 23-04-2016 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 Gene3D G3DSA:3.90.55.10 781 828 1.1E-7 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 PANTHER PTHR11615 698 837 0.0 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 PANTHER PTHR11615 853 877 0.0 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 PANTHER PTHR11615 35 413 0.0 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 PANTHER PTHR11615 995 1230 0.0 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 SUPERFAMILY SSF53706 18 1069 0.0 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 Gene3D G3DSA:2.40.40.20 1055 1235 2.5E-43 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 Gene3D G3DSA:3.40.228.10 218 336 1.7E-75 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 Gene3D G3DSA:3.40.228.10 490 593 1.7E-75 T 23-04-2016 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 1126 1153 - T 23-04-2016 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 RD1_RS11220 1f1fa96cc03484335274734570e0dfb8 1246 Gene3D G3DSA:4.10.1200.10 1 28 1.8E-6 T 23-04-2016 RD1_RS17820 9e91ec8c9d803e08b9679614fffe4636 400 Pfam PF00155 Aminotransferase class I and II 32 392 3.9E-75 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS17820 9e91ec8c9d803e08b9679614fffe4636 400 PANTHER PTHR11751:SF306 14 395 3.4E-166 T 23-04-2016 RD1_RS17820 9e91ec8c9d803e08b9679614fffe4636 400 Gene3D G3DSA:3.90.1150.10 275 399 1.7E-44 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS17820 9e91ec8c9d803e08b9679614fffe4636 400 Gene3D G3DSA:3.40.640.10 45 274 2.3E-69 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS17820 9e91ec8c9d803e08b9679614fffe4636 400 PANTHER PTHR11751 14 395 3.4E-166 T 23-04-2016 RD1_RS17820 9e91ec8c9d803e08b9679614fffe4636 400 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 236 249 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 RD1_RS17820 9e91ec8c9d803e08b9679614fffe4636 400 SUPERFAMILY SSF53383 1 398 1.31E-110 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 423 659 3.9E-120 T 23-04-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 620 646 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 15 660 45.98 T 23-04-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 451 464 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 Pfam PF04542 Sigma-70 region 2 427 496 1.9E-21 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 Gene3D G3DSA:1.10.10.10 590 660 2.6E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 Pfam PF03979 Sigma-70 factor, region 1.1 24 89 7.3E-23 T 23-04-2016 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 Gene3D G3DSA:1.10.601.10 132 496 1.2E-124 T 23-04-2016 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 Gene3D G3DSA:1.10.601.10 9 131 2.6E-4 T 23-04-2016 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 Pfam PF04539 Sigma-70 region 3 506 581 1.6E-29 T 23-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 PRINTS PR00046 Major sigma-70 factor signature 599 611 5.64E-31 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 PRINTS PR00046 Major sigma-70 factor signature 475 483 5.64E-31 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 PRINTS PR00046 Major sigma-70 factor signature 620 635 5.64E-31 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 PRINTS PR00046 Major sigma-70 factor signature 451 464 5.64E-31 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 PRINTS PR00046 Major sigma-70 factor signature 635 646 5.64E-31 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 423 648 9.2E-39 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 Pfam PF04546 Sigma-70, non-essential region 157 395 4.8E-38 T 23-04-2016 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 SUPERFAMILY SSF88659 557 659 8.94E-26 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 Pfam PF00140 Sigma-70 factor, region 1.2 115 146 1.9E-13 T 23-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 Pfam PF04545 Sigma-70, region 4 595 648 1.4E-18 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 PANTHER PTHR30603 28 169 1.5E-228 T 23-04-2016 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 PANTHER PTHR30603 374 660 1.5E-228 T 23-04-2016 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 SUPERFAMILY SSF88946 132 494 5.18E-95 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 Gene3D G3DSA:1.10.10.10 500 551 8.7E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 PANTHER PTHR30603:SF0 28 169 1.5E-228 T 23-04-2016 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 PANTHER PTHR30603:SF0 374 660 1.5E-228 T 23-04-2016 RD1_RS08275 bda8b74938948afa505cc3edb4479f6e 661 SUPERFAMILY SSF88659 500 573 1.22E-20 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 Pfam PF05190 MutS family domain IV 431 524 7.1E-23 T 23-04-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 Gene3D G3DSA:3.30.420.110 127 257 1.4E-30 T 23-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 703 719 - T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 Gene3D G3DSA:3.40.1170.10 3 121 8.7E-48 T 23-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 4 873 4.8E-262 T 23-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 Pfam PF05192 MutS domain III 271 567 1.8E-35 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 SUPERFAMILY SSF55271 2 116 2.35E-38 T 23-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 Gene3D G3DSA:3.40.50.300 575 813 4.1E-78 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 SUPERFAMILY SSF48334 269 571 1.83E-76 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 Pfam PF00488 MutS domain V 626 812 9.9E-82 T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 SMART SM00534 622 809 5.5E-107 T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 Gene3D G3DSA:1.10.1420.10 266 471 3.3E-47 T 23-04-2016 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 SUPERFAMILY SSF52540 575 813 2.31E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 PIRSF PIRSF037677 1 827 7.5E-144 T 23-04-2016 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 Pfam PF05188 MutS domain II 129 254 1.7E-17 T 23-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 SUPERFAMILY SSF53150 118 280 2.49E-37 T 23-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 PANTHER PTHR11361 3 874 0.0 T 23-04-2016 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 3 868 23.249 T 23-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 Pfam PF01624 MutS domain I 4 120 5.0E-41 T 23-04-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 PANTHER PTHR11361:SF86 3 874 0.0 T 23-04-2016 RD1_RS01970 7c1ae1e1d1dbd5b848db2dd51e2a8b7f 878 SMART SM00533 285 599 1.5E-77 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 PIRSF PIRSF000099 4 424 2.5E-113 T 23-04-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 26 420 1.4E-129 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 PANTHER PTHR21256 26 427 9.1E-181 T 23-04-2016 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 Pfam PF00815 Histidinol dehydrogenase 16 420 1.7E-134 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 222 254 - T 23-04-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 PRINTS PR00083 Histidinol dehydrogenase signature 313 338 2.9E-64 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 PRINTS PR00083 Histidinol dehydrogenase signature 193 218 2.9E-64 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 PRINTS PR00083 Histidinol dehydrogenase signature 354 372 2.9E-64 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 PRINTS PR00083 Histidinol dehydrogenase signature 101 128 2.9E-64 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 PRINTS PR00083 Histidinol dehydrogenase signature 163 189 2.9E-64 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 PRINTS PR00083 Histidinol dehydrogenase signature 244 263 2.9E-64 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 PRINTS PR00083 Histidinol dehydrogenase signature 26 50 2.9E-64 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 PRINTS PR00083 Histidinol dehydrogenase signature 222 243 2.9E-64 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 Gene3D G3DSA:3.40.50.1980 217 365 1.7E-55 T 23-04-2016 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 1 421 31.025 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 PANTHER PTHR21256:SF11 26 427 9.1E-181 T 23-04-2016 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 SUPERFAMILY SSF53720 21 421 2.55E-67 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS18070 60b9dd8d6a21c466d45d07f4313ae71f 442 Gene3D G3DSA:3.40.50.1980 20 216 1.2E-66 T 23-04-2016 RD1_RS18830 629b5961436a8b26a53a1448c03e2ba1 446 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 274 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS18830 629b5961436a8b26a53a1448c03e2ba1 446 Pfam PF00202 Aminotransferase class-III 16 435 7.4E-107 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS18830 629b5961436a8b26a53a1448c03e2ba1 446 PANTHER PTHR11986:SF78 7 443 9.8E-191 T 23-04-2016 RD1_RS18830 629b5961436a8b26a53a1448c03e2ba1 446 SUPERFAMILY SSF53383 8 437 2.92E-123 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS18830 629b5961436a8b26a53a1448c03e2ba1 446 PANTHER PTHR11986 7 443 9.8E-191 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS18830 629b5961436a8b26a53a1448c03e2ba1 446 Gene3D G3DSA:3.90.1150.10 309 438 8.3E-36 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS18830 629b5961436a8b26a53a1448c03e2ba1 446 Gene3D G3DSA:3.40.640.10 50 308 1.3E-83 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS09965 e3dc704fb1eee08e3ff1f8518e72ff2c 412 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 60 407 6.1E-111 T 23-04-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RD1_RS09965 e3dc704fb1eee08e3ff1f8518e72ff2c 412 PIRSF PIRSF000726 59 412 3.9E-126 T 23-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RD1_RS09965 e3dc704fb1eee08e3ff1f8518e72ff2c 412 SUPERFAMILY SSF55021 336 409 4.58E-23 T 23-04-2016 RD1_RS09965 e3dc704fb1eee08e3ff1f8518e72ff2c 412 Gene3D G3DSA:3.30.70.260 272 314 1.1E-4 T 23-04-2016 RD1_RS09965 e3dc704fb1eee08e3ff1f8518e72ff2c 412 Pfam PF01842 ACT domain 270 320 2.8E-10 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RD1_RS09965 e3dc704fb1eee08e3ff1f8518e72ff2c 412 SUPERFAMILY SSF55021 251 332 2.65E-17 T 23-04-2016 RD1_RS09965 e3dc704fb1eee08e3ff1f8518e72ff2c 412 PANTHER PTHR21499 1 410 4.4E-154 T 23-04-2016 RD1_RS09965 e3dc704fb1eee08e3ff1f8518e72ff2c 412 Gene3D G3DSA:3.40.1160.10 2 251 1.7E-67 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RD1_RS09965 e3dc704fb1eee08e3ff1f8518e72ff2c 412 SUPERFAMILY SSF53633 4 247 4.45E-66 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RD1_RS09965 e3dc704fb1eee08e3ff1f8518e72ff2c 412 Pfam PF13840 ACT domain 343 404 8.8E-17 T 23-04-2016 IPR027795 GATS-like ACT domain RD1_RS09965 e3dc704fb1eee08e3ff1f8518e72ff2c 412 PANTHER PTHR21499:SF27 1 410 4.4E-154 T 23-04-2016 RD1_RS09965 e3dc704fb1eee08e3ff1f8518e72ff2c 412 Pfam PF00696 Amino acid kinase family 3 230 9.2E-44 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RD1_RS09965 e3dc704fb1eee08e3ff1f8518e72ff2c 412 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 3 408 3.1E-122 T 23-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RD1_RS09965 e3dc704fb1eee08e3ff1f8518e72ff2c 412 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 23-04-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RD1_RS15115 b6526ec2b505c4e90d99c2c4bd55c0d3 177 PANTHER PTHR11995 30 172 6.0E-119 T 23-04-2016 RD1_RS15115 b6526ec2b505c4e90d99c2c4bd55c0d3 177 PANTHER PTHR11995:SF19 30 172 6.0E-119 T 23-04-2016 RD1_RS15115 b6526ec2b505c4e90d99c2c4bd55c0d3 177 SUPERFAMILY SSF56770 28 172 3.92E-67 T 23-04-2016 RD1_RS15115 b6526ec2b505c4e90d99c2c4bd55c0d3 177 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 30 171 1.6E-74 T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RD1_RS15115 b6526ec2b505c4e90d99c2c4bd55c0d3 177 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 19 170 39.77 T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RD1_RS15115 b6526ec2b505c4e90d99c2c4bd55c0d3 177 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 56 165 1.9E-23 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RD1_RS15115 b6526ec2b505c4e90d99c2c4bd55c0d3 177 Gene3D G3DSA:3.40.50.700 40 167 8.7E-33 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RD1_RS15115 b6526ec2b505c4e90d99c2c4bd55c0d3 177 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 137 153 - T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RD1_RS00510 50d627d4a177cc38a1317d58582083d8 368 Pfam PF00891 O-methyltransferase 126 349 1.2E-53 T 23-04-2016 IPR001077 O-methyltransferase, family 2 GO:0008171 RD1_RS00510 50d627d4a177cc38a1317d58582083d8 368 PANTHER PTHR11746:SF63 18 348 1.3E-38 T 23-04-2016 RD1_RS00510 50d627d4a177cc38a1317d58582083d8 368 Gene3D G3DSA:3.40.50.150 122 364 1.5E-42 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS00510 50d627d4a177cc38a1317d58582083d8 368 Gene3D G3DSA:1.10.10.10 39 116 1.1E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS00510 50d627d4a177cc38a1317d58582083d8 368 Pfam PF16864 Dimerisation domain 39 106 9.9E-9 T 23-04-2016 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain RD1_RS00510 50d627d4a177cc38a1317d58582083d8 368 PANTHER PTHR11746 18 348 1.3E-38 T 23-04-2016 RD1_RS00510 50d627d4a177cc38a1317d58582083d8 368 SUPERFAMILY SSF46785 38 116 2.4E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS00510 50d627d4a177cc38a1317d58582083d8 368 SUPERFAMILY SSF53335 124 356 4.3E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS08345 a3bad76f594946fedb5710e11be4d9ac 160 SUPERFAMILY SSF55729 1 143 8.1E-27 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS08345 a3bad76f594946fedb5710e11be4d9ac 160 PANTHER PTHR13947 3 158 3.2E-28 T 23-04-2016 RD1_RS08345 a3bad76f594946fedb5710e11be4d9ac 160 Pfam PF00583 Acetyltransferase (GNAT) family 77 137 5.0E-11 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS08345 a3bad76f594946fedb5710e11be4d9ac 160 PANTHER PTHR13947:SF16 3 158 3.2E-28 T 23-04-2016 RD1_RS08345 a3bad76f594946fedb5710e11be4d9ac 160 Gene3D G3DSA:3.40.630.30 1 158 1.4E-31 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 SUPERFAMILY SSF158472 300 350 1.31E-6 T 23-04-2016 RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 SMART SM01358 20 271 2.8E-36 T 23-04-2016 IPR032255 Helical bimodular sensor domain RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 Gene3D G3DSA:1.10.287.950 516 717 1.5E-48 T 23-04-2016 RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 SUPERFAMILY SSF58104 465 745 3.14E-61 T 23-04-2016 RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 SMART SM00304 445 497 0.086 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 SMART SM00304 300 353 0.0013 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 PANTHER PTHR32089 128 233 1.3E-80 T 23-04-2016 RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 PANTHER PTHR32089 274 335 1.3E-80 T 23-04-2016 RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 PANTHER PTHR32089 480 748 1.3E-80 T 23-04-2016 RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 553 744 2.1E-47 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 SMART SM00283 498 745 6.7E-71 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 519 548 1.4E-37 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 673 702 1.4E-37 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 625 654 1.4E-37 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 265 290 1.4E-37 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 596 623 1.4E-37 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RD1_RS05375 fbcc2b8746068d5666bac5244b606b80 791 Pfam PF00672 HAMP domain 282 349 2.5E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS09725 d8100a45f5bb28333d2930adb5d67e73 641 PANTHER PTHR23076 5 604 0.0 T 23-04-2016 RD1_RS09725 d8100a45f5bb28333d2930adb5d67e73 641 Pfam PF01434 Peptidase family M41 384 591 3.9E-66 T 23-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 RD1_RS09725 d8100a45f5bb28333d2930adb5d67e73 641 SMART SM00382 186 325 1.0E-23 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS09725 d8100a45f5bb28333d2930adb5d67e73 641 SUPERFAMILY SSF140990 404 602 2.62E-62 T 23-04-2016 RD1_RS09725 d8100a45f5bb28333d2930adb5d67e73 641 ProSitePatterns PS00674 AAA-protein family signature. 293 311 - T 23-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 RD1_RS09725 d8100a45f5bb28333d2930adb5d67e73 641 Gene3D G3DSA:3.40.50.300 144 321 7.3E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09725 d8100a45f5bb28333d2930adb5d67e73 641 Pfam PF06480 FtsH Extracellular 8 89 8.7E-14 T 23-04-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 RD1_RS09725 d8100a45f5bb28333d2930adb5d67e73 641 SUPERFAMILY SSF52540 143 393 4.53E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09725 d8100a45f5bb28333d2930adb5d67e73 641 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 191 322 2.6E-45 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RD1_RS09725 d8100a45f5bb28333d2930adb5d67e73 641 Gene3D G3DSA:1.10.8.60 327 406 1.8E-27 T 23-04-2016 RD1_RS09725 d8100a45f5bb28333d2930adb5d67e73 641 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 5 604 36.007 T 23-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 RD1_RS09725 d8100a45f5bb28333d2930adb5d67e73 641 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 103 592 1.7E-217 T 23-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 RD1_RS16370 dacf5ee1eed9e323b0b2e3f7721ca40f 128 PANTHER PTHR36919:SF2 24 128 6.0E-23 T 23-04-2016 RD1_RS16370 dacf5ee1eed9e323b0b2e3f7721ca40f 128 PANTHER PTHR36919 24 128 6.0E-23 T 23-04-2016 RD1_RS16370 dacf5ee1eed9e323b0b2e3f7721ca40f 128 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 25 126 5.1E-18 T 23-04-2016 IPR019223 Domain of unknown function DUF2147 RD1_RS17565 b9f07f7d62e75e4f9db6ac3348bbdb2b 689 Pfam PF13614 AAA domain 509 620 3.1E-9 T 23-04-2016 IPR025669 AAA domain RD1_RS17565 b9f07f7d62e75e4f9db6ac3348bbdb2b 689 SUPERFAMILY SSF52540 500 664 2.74E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17565 b9f07f7d62e75e4f9db6ac3348bbdb2b 689 PANTHER PTHR32309:SF13 1 660 3.3E-69 T 23-04-2016 RD1_RS17565 b9f07f7d62e75e4f9db6ac3348bbdb2b 689 PANTHER PTHR32309 1 660 3.3E-69 T 23-04-2016 RD1_RS17565 b9f07f7d62e75e4f9db6ac3348bbdb2b 689 Pfam PF02706 Chain length determinant protein 23 181 4.5E-9 T 23-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 RD1_RS17565 b9f07f7d62e75e4f9db6ac3348bbdb2b 689 Gene3D G3DSA:3.40.50.300 501 662 4.7E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11790 1400712f04ee60733cf43ec77655e58c 355 SUPERFAMILY SSF48029 135 347 4.58E-44 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RD1_RS11790 1400712f04ee60733cf43ec77655e58c 355 Pfam PF14842 FliG N-terminal domain 24 126 5.0E-16 T 23-04-2016 IPR028263 Flagellar motor switch protein FliG, N-terminal domain RD1_RS11790 1400712f04ee60733cf43ec77655e58c 355 Gene3D G3DSA:1.10.220.30 29 86 6.0E-6 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RD1_RS11790 1400712f04ee60733cf43ec77655e58c 355 Gene3D G3DSA:1.10.220.30 124 204 1.9E-15 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RD1_RS11790 1400712f04ee60733cf43ec77655e58c 355 SUPERFAMILY SSF48029 28 115 3.92E-8 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RD1_RS11790 1400712f04ee60733cf43ec77655e58c 355 Pfam PF14841 FliG middle domain 135 204 2.0E-12 T 23-04-2016 IPR032779 Flagellar motor switch protein FliG, middle domain RD1_RS11790 1400712f04ee60733cf43ec77655e58c 355 Gene3D G3DSA:1.10.220.30 213 353 8.0E-31 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RD1_RS11790 1400712f04ee60733cf43ec77655e58c 355 PANTHER PTHR30534 11 355 3.9E-36 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RD1_RS11790 1400712f04ee60733cf43ec77655e58c 355 PRINTS PR00954 Flagellar motor switch protein FliG signature 295 321 5.6E-16 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RD1_RS11790 1400712f04ee60733cf43ec77655e58c 355 PRINTS PR00954 Flagellar motor switch protein FliG signature 133 156 5.6E-16 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RD1_RS11790 1400712f04ee60733cf43ec77655e58c 355 PRINTS PR00954 Flagellar motor switch protein FliG signature 213 238 5.6E-16 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RD1_RS11790 1400712f04ee60733cf43ec77655e58c 355 PRINTS PR00954 Flagellar motor switch protein FliG signature 24 40 5.6E-16 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RD1_RS11790 1400712f04ee60733cf43ec77655e58c 355 PRINTS PR00954 Flagellar motor switch protein FliG signature 53 79 5.6E-16 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RD1_RS11790 1400712f04ee60733cf43ec77655e58c 355 PANTHER PTHR30534:SF0 11 355 3.9E-36 T 23-04-2016 RD1_RS11790 1400712f04ee60733cf43ec77655e58c 355 Pfam PF01706 FliG C-terminal domain 235 346 2.8E-27 T 23-04-2016 IPR023087 Flagellar motor switch protein FliG, C-terminal RD1_RS17430 d5bf157fa6d9ceeaddacc18f245098b8 340 SMART SM00354 6 76 4.1E-26 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS17430 d5bf157fa6d9ceeaddacc18f245098b8 340 Gene3D G3DSA:3.40.50.2300 59 176 4.5E-28 T 23-04-2016 RD1_RS17430 d5bf157fa6d9ceeaddacc18f245098b8 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 8 18 6.1E-5 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS17430 d5bf157fa6d9ceeaddacc18f245098b8 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 18 28 6.1E-5 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS17430 d5bf157fa6d9ceeaddacc18f245098b8 340 Gene3D G3DSA:1.10.260.40 7 58 1.9E-22 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS17430 d5bf157fa6d9ceeaddacc18f245098b8 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 53 2.8E-17 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS17430 d5bf157fa6d9ceeaddacc18f245098b8 340 Pfam PF13377 Periplasmic binding protein-like domain 177 333 3.7E-29 T 23-04-2016 RD1_RS17430 d5bf157fa6d9ceeaddacc18f245098b8 340 PANTHER PTHR30146 6 340 2.1E-90 T 23-04-2016 RD1_RS17430 d5bf157fa6d9ceeaddacc18f245098b8 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 9 27 - T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS17430 d5bf157fa6d9ceeaddacc18f245098b8 340 SUPERFAMILY SSF53822 66 337 9.24E-54 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS17430 d5bf157fa6d9ceeaddacc18f245098b8 340 Gene3D G3DSA:3.40.50.2300 177 335 1.4E-44 T 23-04-2016 RD1_RS17430 d5bf157fa6d9ceeaddacc18f245098b8 340 SUPERFAMILY SSF47413 7 65 2.78E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS14680 37912a35ab9d784cdfbec9f08918371e 201 SUPERFAMILY SSF50475 11 201 2.36E-62 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS14680 37912a35ab9d784cdfbec9f08918371e 201 PANTHER PTHR10851 11 201 4.6E-74 T 23-04-2016 RD1_RS14680 37912a35ab9d784cdfbec9f08918371e 201 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 24 102 1.8E-18 T 23-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RD1_RS14680 37912a35ab9d784cdfbec9f08918371e 201 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 1 201 34.094 T 23-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RD1_RS14680 37912a35ab9d784cdfbec9f08918371e 201 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 159 201 3.9E-17 T 23-04-2016 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RD1_RS14680 37912a35ab9d784cdfbec9f08918371e 201 PANTHER PTHR10851:SF0 11 201 4.6E-74 T 23-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RD1_RS14680 37912a35ab9d784cdfbec9f08918371e 201 PIRSF PIRSF000190 2 201 2.0E-63 T 23-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RD1_RS14680 37912a35ab9d784cdfbec9f08918371e 201 Gene3D G3DSA:2.30.110.10 11 201 6.6E-71 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS14680 37912a35ab9d784cdfbec9f08918371e 201 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 11 201 2.4E-63 T 23-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RD1_RS14680 37912a35ab9d784cdfbec9f08918371e 201 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 169 182 - T 23-04-2016 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RD1_RS04175 9c16f9c8504c634212f0f484bafee8fc 507 Gene3D G3DSA:1.10.760.10 367 507 8.0E-19 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS04175 9c16f9c8504c634212f0f484bafee8fc 507 SUPERFAMILY SSF46626 366 507 5.11E-27 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS04175 9c16f9c8504c634212f0f484bafee8fc 507 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 62 507 1.3E-138 T 23-04-2016 IPR010538 Di-haem oxidoreductase, putative peroxidase RD1_RS04175 9c16f9c8504c634212f0f484bafee8fc 507 PANTHER PTHR30600 285 507 2.3E-135 T 23-04-2016 RD1_RS04175 9c16f9c8504c634212f0f484bafee8fc 507 PANTHER PTHR30600 58 138 2.3E-135 T 23-04-2016 RD1_RS04175 9c16f9c8504c634212f0f484bafee8fc 507 PANTHER PTHR30600 212 260 2.3E-135 T 23-04-2016 RD1_RS04175 9c16f9c8504c634212f0f484bafee8fc 507 PIRSF PIRSF028099 3 507 2.4E-178 T 23-04-2016 IPR010538 Di-haem oxidoreductase, putative peroxidase RD1_RS04175 9c16f9c8504c634212f0f484bafee8fc 507 PANTHER PTHR30600:SF4 285 507 2.3E-135 T 23-04-2016 RD1_RS04175 9c16f9c8504c634212f0f484bafee8fc 507 PANTHER PTHR30600:SF4 58 138 2.3E-135 T 23-04-2016 RD1_RS04175 9c16f9c8504c634212f0f484bafee8fc 507 PANTHER PTHR30600:SF4 212 260 2.3E-135 T 23-04-2016 RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 ProSitePatterns PS00211 ABC transporters family signature. 509 523 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 SUPERFAMILY SSF52540 10 260 5.11E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 PANTHER PTHR24220 383 494 2.9E-128 T 23-04-2016 RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 PANTHER PTHR24220 12 295 2.9E-128 T 23-04-2016 RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 PANTHER PTHR24220:SF586 383 494 2.9E-128 T 23-04-2016 RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 PANTHER PTHR24220:SF586 12 295 2.9E-128 T 23-04-2016 RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 SUPERFAMILY SSF52540 355 607 1.07E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 Pfam PF00005 ABC transporter 385 536 7.0E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 Pfam PF00005 ABC transporter 32 188 3.7E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 239 328 1.1E-18 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 586 677 8.8E-23 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 Gene3D G3DSA:3.40.50.300 353 610 2.9E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 Gene3D G3DSA:3.40.50.300 9 262 7.6E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 588 648 8.1E-14 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 240 304 3.8E-17 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 SMART SM00382 39 238 3.5E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS11880 b71c6cc109fef223c23ef00eefa92b69 696 SMART SM00382 392 586 3.2E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS00070 6b815ad7fff7f84456a44cc1ea686fe1 659 PANTHER PTHR30177:SF2 54 330 1.0E-40 T 23-04-2016 RD1_RS00070 6b815ad7fff7f84456a44cc1ea686fe1 659 PANTHER PTHR30177 54 330 1.0E-40 T 23-04-2016 RD1_RS00070 6b815ad7fff7f84456a44cc1ea686fe1 659 Gene3D G3DSA:1.10.3720.10 143 322 4.6E-28 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00070 6b815ad7fff7f84456a44cc1ea686fe1 659 Gene3D G3DSA:1.10.3720.10 458 639 9.9E-27 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00070 6b815ad7fff7f84456a44cc1ea686fe1 659 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 483 640 4.3E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00070 6b815ad7fff7f84456a44cc1ea686fe1 659 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 163 322 5.4E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00070 6b815ad7fff7f84456a44cc1ea686fe1 659 SUPERFAMILY SSF161098 144 326 2.35E-32 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00070 6b815ad7fff7f84456a44cc1ea686fe1 659 SUPERFAMILY SSF161098 460 643 3.92E-31 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11100 8073cfa36b7ae6c7f690c29c9b1535e6 359 SUPERFAMILY SSF50331 252 348 4.68E-9 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS11100 8073cfa36b7ae6c7f690c29c9b1535e6 359 PANTHER PTHR24220:SF150 20 292 1.5E-127 T 23-04-2016 RD1_RS11100 8073cfa36b7ae6c7f690c29c9b1535e6 359 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS11100 8073cfa36b7ae6c7f690c29c9b1535e6 359 PANTHER PTHR24220 20 292 1.5E-127 T 23-04-2016 RD1_RS11100 8073cfa36b7ae6c7f690c29c9b1535e6 359 SUPERFAMILY SSF52540 19 256 2.05E-86 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11100 8073cfa36b7ae6c7f690c29c9b1535e6 359 SMART SM00382 43 226 1.7E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS11100 8073cfa36b7ae6c7f690c29c9b1535e6 359 Gene3D G3DSA:3.40.50.300 13 250 3.0E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11100 8073cfa36b7ae6c7f690c29c9b1535e6 359 Pfam PF00005 ABC transporter 34 176 1.7E-36 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS11100 8073cfa36b7ae6c7f690c29c9b1535e6 359 Pfam PF08402 TOBE domain 284 348 1.4E-6 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS05185 340db576af5d556b489811652ddfcbae 280 SUPERFAMILY SSF51182 18 271 6.69E-83 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS05185 340db576af5d556b489811652ddfcbae 280 Pfam PF07883 Cupin domain 194 259 1.1E-7 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RD1_RS05185 340db576af5d556b489811652ddfcbae 280 Pfam PF07883 Cupin domain 71 140 3.0E-13 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RD1_RS05185 340db576af5d556b489811652ddfcbae 280 PANTHER PTHR34571:SF1 15 271 1.4E-72 T 23-04-2016 RD1_RS05185 340db576af5d556b489811652ddfcbae 280 PANTHER PTHR34571 15 271 1.4E-72 T 23-04-2016 RD1_RS05185 340db576af5d556b489811652ddfcbae 280 TIGRFAM TIGR03214 ura-cupin: putative allantoin catabolism protein 5 270 6.0E-116 T 23-04-2016 IPR017627 Conserved hypothetical protein CHP03214, putative allantoin-urate catabolism protein KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 RD1_RS05185 340db576af5d556b489811652ddfcbae 280 Gene3D G3DSA:2.60.120.10 5 269 4.0E-109 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS06900 efa41b4da8eb666b8c35baaf7925dfe7 153 Gene3D G3DSA:3.40.50.2300 15 141 1.7E-29 T 23-04-2016 RD1_RS06900 efa41b4da8eb666b8c35baaf7925dfe7 153 Pfam PF00072 Response regulator receiver domain 20 129 7.3E-18 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS06900 efa41b4da8eb666b8c35baaf7925dfe7 153 PANTHER PTHR26402 17 128 1.6E-24 T 23-04-2016 RD1_RS06900 efa41b4da8eb666b8c35baaf7925dfe7 153 SUPERFAMILY SSF52172 17 143 1.2E-26 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS06900 efa41b4da8eb666b8c35baaf7925dfe7 153 SMART SM00448 17 139 2.2E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS14050 5b8ecbd72e8beb06762eb626853413df 360 Gene3D G3DSA:3.20.20.20 21 268 7.1E-94 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 RD1_RS14050 5b8ecbd72e8beb06762eb626853413df 360 Gene3D G3DSA:3.20.20.20 313 337 7.1E-94 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 RD1_RS14050 5b8ecbd72e8beb06762eb626853413df 360 SUPERFAMILY SSF51717 21 269 6.67E-69 T 23-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 RD1_RS14050 5b8ecbd72e8beb06762eb626853413df 360 Pfam PF00809 Pterin binding enzyme 25 261 1.5E-26 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 RD1_RS00100 1fba36255f14ee6ce01e97a5fe9a9f62 190 PANTHER PTHR10245 10 190 1.5E-36 T 23-04-2016 RD1_RS00100 1fba36255f14ee6ce01e97a5fe9a9f62 190 PANTHER PTHR10245:SF53 10 190 1.5E-36 T 23-04-2016 RD1_RS00100 1fba36255f14ee6ce01e97a5fe9a9f62 190 Pfam PF13560 Helix-turn-helix domain 12 66 3.2E-15 T 23-04-2016 RD1_RS00100 1fba36255f14ee6ce01e97a5fe9a9f62 190 Pfam PF07883 Cupin domain 118 184 1.4E-7 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RD1_RS00100 1fba36255f14ee6ce01e97a5fe9a9f62 190 Gene3D G3DSA:2.60.120.10 111 188 1.2E-16 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS00100 1fba36255f14ee6ce01e97a5fe9a9f62 190 SUPERFAMILY SSF47413 10 73 9.92E-18 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS00100 1fba36255f14ee6ce01e97a5fe9a9f62 190 SUPERFAMILY SSF51182 56 188 2.17E-24 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS00100 1fba36255f14ee6ce01e97a5fe9a9f62 190 SMART SM00530 15 70 1.4E-14 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS00100 1fba36255f14ee6ce01e97a5fe9a9f62 190 Gene3D G3DSA:1.10.260.40 11 110 8.9E-24 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS01300 d77fbd0d8e90d9b57c30857df1a17536 368 Gene3D G3DSA:3.40.190.10 159 307 1.2E-33 T 23-04-2016 RD1_RS01300 d77fbd0d8e90d9b57c30857df1a17536 368 PANTHER PTHR30222:SF5 1 366 5.9E-43 T 23-04-2016 RD1_RS01300 d77fbd0d8e90d9b57c30857df1a17536 368 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 161 175 2.6E-10 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS01300 d77fbd0d8e90d9b57c30857df1a17536 368 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 57 78 2.6E-10 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS01300 d77fbd0d8e90d9b57c30857df1a17536 368 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 102 115 2.6E-10 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS01300 d77fbd0d8e90d9b57c30857df1a17536 368 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 135 151 2.6E-10 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS01300 d77fbd0d8e90d9b57c30857df1a17536 368 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 41 57 2.6E-10 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS01300 d77fbd0d8e90d9b57c30857df1a17536 368 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 268 287 2.6E-10 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS01300 d77fbd0d8e90d9b57c30857df1a17536 368 PANTHER PTHR30222 1 366 5.9E-43 T 23-04-2016 RD1_RS01300 d77fbd0d8e90d9b57c30857df1a17536 368 SUPERFAMILY SSF53850 35 353 1.58E-62 T 23-04-2016 RD1_RS01300 d77fbd0d8e90d9b57c30857df1a17536 368 Gene3D G3DSA:3.40.190.10 34 158 1.7E-12 T 23-04-2016 RD1_RS01300 d77fbd0d8e90d9b57c30857df1a17536 368 Pfam PF13416 Bacterial extracellular solute-binding protein 53 323 2.0E-29 T 23-04-2016 RD1_RS11325 5034a5bb4cdbede967f8dac679eb4495 272 PANTHER PTHR26402:SF413 147 255 1.6E-25 T 23-04-2016 RD1_RS11325 5034a5bb4cdbede967f8dac679eb4495 272 Pfam PF08281 Sigma-70, region 4 95 137 2.9E-7 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS11325 5034a5bb4cdbede967f8dac679eb4495 272 Pfam PF00072 Response regulator receiver domain 149 255 1.2E-11 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS11325 5034a5bb4cdbede967f8dac679eb4495 272 PIRSF PIRSF036400 11 272 3.6E-100 T 23-04-2016 IPR014605 Signal transduction response regulator PhyR-like, alphaproteobacteria RD1_RS11325 5034a5bb4cdbede967f8dac679eb4495 272 SUPERFAMILY SSF52172 148 262 2.56E-21 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS11325 5034a5bb4cdbede967f8dac679eb4495 272 PANTHER PTHR26402 147 255 1.6E-25 T 23-04-2016 RD1_RS11325 5034a5bb4cdbede967f8dac679eb4495 272 Gene3D G3DSA:1.10.10.10 84 144 2.0E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11325 5034a5bb4cdbede967f8dac679eb4495 272 SMART SM00448 147 258 9.7E-13 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS11325 5034a5bb4cdbede967f8dac679eb4495 272 Gene3D G3DSA:3.40.50.2300 147 262 2.6E-22 T 23-04-2016 RD1_RS11325 5034a5bb4cdbede967f8dac679eb4495 272 SUPERFAMILY SSF88659 86 143 2.99E-8 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 Pfam PF03949 Malic enzyme, NAD binding domain 167 363 2.0E-21 T 23-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 PANTHER PTHR23406:SF23 31 357 1.2E-175 T 23-04-2016 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 PANTHER PTHR23406:SF23 373 443 1.2E-175 T 23-04-2016 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 SUPERFAMILY SSF53223 12 163 5.68E-55 T 23-04-2016 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 Pfam PF00390 Malic enzyme, N-terminal domain 22 153 1.4E-28 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 SUPERFAMILY SSF51735 165 441 1.04E-85 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 SMART SM01274 20 153 3.6E-83 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 PIRSF PIRSF036684 1 751 0.0 T 23-04-2016 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase GO:0004473|GO:0005829|GO:0006108|GO:0016616|GO:0030145|GO:0046872|GO:0055114 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 Gene3D G3DSA:3.40.50.10380 10 162 2.0E-51 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 ProSitePatterns PS00331 Malic enzymes signature. 161 177 - T 23-04-2016 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 Pfam PF01515 Phosphate acetyl/butaryl transferase 430 747 1.3E-71 T 23-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 PANTHER PTHR23406 31 357 1.2E-175 T 23-04-2016 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 PANTHER PTHR23406 373 443 1.2E-175 T 23-04-2016 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 SUPERFAMILY SSF53659 430 748 9.05E-70 T 23-04-2016 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 Gene3D G3DSA:3.40.50.10750 579 722 4.3E-43 T 23-04-2016 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 SMART SM00919 165 401 3.6E-144 T 23-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RD1_RS01965 2c1bee8c2cd45063bcf69aab50597fa6 751 Gene3D G3DSA:3.40.50.720 163 449 1.5E-86 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS09210 0a70c46937565c389a4b332a0e634c47 285 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 75 232 9.4E-42 T 23-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RD1_RS09210 0a70c46937565c389a4b332a0e634c47 285 Gene3D G3DSA:3.10.290.10 9 72 7.4E-24 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RD1_RS09210 0a70c46937565c389a4b332a0e634c47 285 SUPERFAMILY SSF55174 5 74 1.1E-15 T 23-04-2016 RD1_RS09210 0a70c46937565c389a4b332a0e634c47 285 PANTHER PTHR21600:SF2 11 235 1.0E-68 T 23-04-2016 RD1_RS09210 0a70c46937565c389a4b332a0e634c47 285 PANTHER PTHR21600 11 235 1.0E-68 T 23-04-2016 RD1_RS09210 0a70c46937565c389a4b332a0e634c47 285 SUPERFAMILY SSF55120 67 231 6.04E-37 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS09210 0a70c46937565c389a4b332a0e634c47 285 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 108 122 - T 23-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RD1_RS09210 0a70c46937565c389a4b332a0e634c47 285 SMART SM00363 10 71 3.2E-15 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RD1_RS09210 0a70c46937565c389a4b332a0e634c47 285 Pfam PF01479 S4 domain 11 56 2.9E-15 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RD1_RS09210 0a70c46937565c389a4b332a0e634c47 285 Pfam PF00849 RNA pseudouridylate synthase 71 202 4.4E-11 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS07035 e4d3f20010bd81d95a461cd271d9ce13 422 SUPERFAMILY SSF55424 353 421 4.67E-18 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RD1_RS07035 e4d3f20010bd81d95a461cd271d9ce13 422 SUPERFAMILY SSF51905 33 138 1.17E-23 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07035 e4d3f20010bd81d95a461cd271d9ce13 422 SUPERFAMILY SSF51905 274 349 1.17E-23 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07035 e4d3f20010bd81d95a461cd271d9ce13 422 Gene3D G3DSA:3.50.50.60 150 280 2.6E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07035 e4d3f20010bd81d95a461cd271d9ce13 422 Gene3D G3DSA:3.50.50.60 32 146 5.8E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07035 e4d3f20010bd81d95a461cd271d9ce13 422 Gene3D G3DSA:3.50.50.60 281 349 5.8E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07035 e4d3f20010bd81d95a461cd271d9ce13 422 Pfam PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding 355 420 8.1E-20 T 23-04-2016 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 RD1_RS07035 e4d3f20010bd81d95a461cd271d9ce13 422 SUPERFAMILY SSF51905 145 279 7.77E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07035 e4d3f20010bd81d95a461cd271d9ce13 422 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 33 136 1.1E-8 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07035 e4d3f20010bd81d95a461cd271d9ce13 422 PANTHER PTHR10632:SF10 34 407 5.0E-80 T 23-04-2016 RD1_RS07035 e4d3f20010bd81d95a461cd271d9ce13 422 Gene3D G3DSA:3.90.760.10 353 421 1.9E-21 T 23-04-2016 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 RD1_RS07035 e4d3f20010bd81d95a461cd271d9ce13 422 PANTHER PTHR10632 34 407 5.0E-80 T 23-04-2016 RD1_RS05745 67fc12e618edcf9f3f4b4a7dad8e66f2 133 Pfam PF16156 Domain of unknown function (DUF4864) 25 124 8.1E-39 T 23-04-2016 IPR032347 Protein of unknown function DUF4864 RD1_RS05745 67fc12e618edcf9f3f4b4a7dad8e66f2 133 Gene3D G3DSA:3.10.450.50 38 41 2.8E-4 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS05745 67fc12e618edcf9f3f4b4a7dad8e66f2 133 Gene3D G3DSA:3.10.450.50 76 126 2.8E-4 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS07165 b3918bcd6a66784ff59c21fb9242aa8d 170 SUPERFAMILY SSF160387 48 165 3.92E-33 T 23-04-2016 RD1_RS07165 b3918bcd6a66784ff59c21fb9242aa8d 170 Pfam PF05573 NosL 11 154 7.8E-49 T 23-04-2016 IPR008719 Nitrous oxide reductase accessory protein NosL RD1_RS07165 b3918bcd6a66784ff59c21fb9242aa8d 170 PANTHER PTHR41247 4 169 3.8E-26 T 23-04-2016 RD1_RS10835 ce95773ee36a438027e8e063de66e0bf 90 ProSitePatterns PS00195 Glutaredoxin active site. 7 23 - T 23-04-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 RD1_RS10835 ce95773ee36a438027e8e063de66e0bf 90 PRINTS PR00160 Glutaredoxin signature 5 23 1.0E-12 T 23-04-2016 IPR014025 Glutaredoxin subgroup RD1_RS10835 ce95773ee36a438027e8e063de66e0bf 90 PRINTS PR00160 Glutaredoxin signature 62 75 1.0E-12 T 23-04-2016 IPR014025 Glutaredoxin subgroup RD1_RS10835 ce95773ee36a438027e8e063de66e0bf 90 PRINTS PR00160 Glutaredoxin signature 48 61 1.0E-12 T 23-04-2016 IPR014025 Glutaredoxin subgroup RD1_RS10835 ce95773ee36a438027e8e063de66e0bf 90 SUPERFAMILY SSF52833 4 85 4.09E-24 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS10835 ce95773ee36a438027e8e063de66e0bf 90 Gene3D G3DSA:3.40.30.10 3 81 7.1E-23 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS10835 ce95773ee36a438027e8e063de66e0bf 90 PANTHER PTHR10168 5 84 1.6E-20 T 23-04-2016 RD1_RS10835 ce95773ee36a438027e8e063de66e0bf 90 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 5 84 3.7E-31 T 23-04-2016 IPR011900 Glutaredoxin, GrxC GO:0045454 RD1_RS10835 ce95773ee36a438027e8e063de66e0bf 90 Pfam PF00462 Glutaredoxin 5 65 1.0E-17 T 23-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RD1_RS01060 6a145385d085f95eece26608e795c74d 368 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 245 264 - T 23-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RD1_RS01060 6a145385d085f95eece26608e795c74d 368 Gene3D G3DSA:3.40.718.10 2 365 6.1E-125 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RD1_RS01060 6a145385d085f95eece26608e795c74d 368 PANTHER PTHR11835 7 368 4.4E-182 T 23-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RD1_RS01060 6a145385d085f95eece26608e795c74d 368 SMART SM01329 5 360 1.2E-186 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RD1_RS01060 6a145385d085f95eece26608e795c74d 368 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 360 6.9E-130 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RD1_RS01060 6a145385d085f95eece26608e795c74d 368 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 7 359 4.4E-145 T 23-04-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 RD1_RS01060 6a145385d085f95eece26608e795c74d 368 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 4 364 49.4 T 23-04-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 RD1_RS01060 6a145385d085f95eece26608e795c74d 368 SUPERFAMILY SSF53659 3 364 4.03E-115 T 23-04-2016 RD1_RS01060 6a145385d085f95eece26608e795c74d 368 PANTHER PTHR11835:SF35 7 368 4.4E-182 T 23-04-2016 RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 Gene3D G3DSA:3.40.50.2300 5 136 9.0E-36 T 23-04-2016 RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 SUPERFAMILY SSF46689 387 438 2.33E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 Gene3D G3DSA:1.10.10.60 359 439 7.3E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 SUPERFAMILY SSF52540 146 368 7.89E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 SMART SM00448 5 116 1.4E-35 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 SUPERFAMILY SSF52172 5 189 1.31E-41 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 Gene3D G3DSA:3.40.50.300 144 304 2.2E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 Pfam PF02954 Bacterial regulatory protein, Fis family 396 436 2.4E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 Gene3D G3DSA:1.10.8.60 306 358 9.6E-17 T 23-04-2016 RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 SMART SM00382 166 299 4.4E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 345 354 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 Pfam PF00158 Sigma-54 interaction domain 146 298 3.2E-26 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 PANTHER PTHR32071:SF40 1 443 3.5E-124 T 23-04-2016 RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 PANTHER PTHR32071 1 443 3.5E-124 T 23-04-2016 RD1_RS10460 49fb5839f08e6ae6c4b0012eecd70e23 444 Pfam PF00072 Response regulator receiver domain 7 114 4.9E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS13600 50bd986ddc6668491bb9e8e6c6fd7e2a 459 Gene3D G3DSA:2.40.70.10 2 131 3.6E-42 T 23-04-2016 IPR021109 Aspartic peptidase domain RD1_RS13600 50bd986ddc6668491bb9e8e6c6fd7e2a 459 PANTHER PTHR21621:SF0 153 450 7.1E-100 T 23-04-2016 RD1_RS13600 50bd986ddc6668491bb9e8e6c6fd7e2a 459 Gene3D G3DSA:3.30.470.20 333 435 2.6E-33 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS13600 50bd986ddc6668491bb9e8e6c6fd7e2a 459 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 163 445 2.4E-73 T 23-04-2016 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 RD1_RS13600 50bd986ddc6668491bb9e8e6c6fd7e2a 459 Gene3D G3DSA:3.30.1490.20 262 332 9.0E-4 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS13600 50bd986ddc6668491bb9e8e6c6fd7e2a 459 Pfam PF08443 RimK-like ATP-grasp domain 257 444 4.4E-58 T 23-04-2016 IPR013651 ATP-grasp fold, RimK-type RD1_RS13600 50bd986ddc6668491bb9e8e6c6fd7e2a 459 SUPERFAMILY SSF50630 6 139 5.44E-41 T 23-04-2016 IPR021109 Aspartic peptidase domain RD1_RS13600 50bd986ddc6668491bb9e8e6c6fd7e2a 459 Pfam PF05618 Putative ATP-dependant zinc protease 6 140 1.7E-30 T 23-04-2016 RD1_RS13600 50bd986ddc6668491bb9e8e6c6fd7e2a 459 SUPERFAMILY SSF56059 258 448 1.32E-42 T 23-04-2016 RD1_RS13600 50bd986ddc6668491bb9e8e6c6fd7e2a 459 PANTHER PTHR21621 153 450 7.1E-100 T 23-04-2016 RD1_RS13600 50bd986ddc6668491bb9e8e6c6fd7e2a 459 Gene3D G3DSA:3.40.50.20 162 261 1.9E-14 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS00495 d0eebc3bd00d22b0c6b6cc3334ae0f9b 523 PIRSF PIRSF000163 66 523 6.5E-146 T 23-04-2016 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RD1_RS00495 d0eebc3bd00d22b0c6b6cc3334ae0f9b 523 SUPERFAMILY SSF53807 70 480 4.58E-63 T 23-04-2016 RD1_RS00495 d0eebc3bd00d22b0c6b6cc3334ae0f9b 523 PANTHER PTHR39429:SF2 72 482 4.5E-64 T 23-04-2016 RD1_RS00495 d0eebc3bd00d22b0c6b6cc3334ae0f9b 523 Gene3D G3DSA:3.40.50.1980 76 207 9.9E-4 T 23-04-2016 RD1_RS00495 d0eebc3bd00d22b0c6b6cc3334ae0f9b 523 PANTHER PTHR39429 72 482 4.5E-64 T 23-04-2016 RD1_RS00495 d0eebc3bd00d22b0c6b6cc3334ae0f9b 523 TIGRFAM TIGR02015 BchY: chlorophyllide reductase subunit Y 63 484 2.0E-219 T 23-04-2016 IPR010245 Chlorophyllide reductase subunit Y GO:0015979|GO:0016021|GO:0016731|GO:0030494 KEGG: 00860+1.3.99.35|MetaCyc: PWY-5526|UniPathway: UPA00671 RD1_RS00495 d0eebc3bd00d22b0c6b6cc3334ae0f9b 523 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 76 466 1.9E-46 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RD1_RS02695 066baac7618a4def367d4a340fce3875 279 PANTHER PTHR30329:SF2 3 279 1.8E-47 T 23-04-2016 RD1_RS02695 066baac7618a4def367d4a340fce3875 279 PANTHER PTHR30329 3 279 1.8E-47 T 23-04-2016 RD1_RS02695 066baac7618a4def367d4a340fce3875 279 SUPERFAMILY SSF103088 174 276 6.93E-7 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS02695 066baac7618a4def367d4a340fce3875 279 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 13 65 2.7E-19 T 23-04-2016 IPR025713 Motility protein B, N-terminal domain RD1_RS02695 066baac7618a4def367d4a340fce3875 279 Gene3D G3DSA:3.30.1330.60 173 276 4.1E-6 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 PRINTS PR00945 Mercuric reductase class II signature 170 187 6.3E-5 T 23-04-2016 RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 PRINTS PR00945 Mercuric reductase class II signature 19 37 6.3E-5 T 23-04-2016 RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 PRINTS PR00945 Mercuric reductase class II signature 190 205 6.3E-5 T 23-04-2016 RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 SUPERFAMILY SSF52283 305 360 2.21E-65 T 23-04-2016 RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 SUPERFAMILY SSF52283 1 137 2.21E-65 T 23-04-2016 RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 352 5.7E-79 T 23-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 SMART SM01002 149 297 1.4E-85 T 23-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 Gene3D G3DSA:3.50.50.60 177 195 2.4E-7 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 PANTHER PTHR10160 1 366 6.7E-193 T 23-04-2016 RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 173 198 - T 23-04-2016 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 PIRSF PIRSF000183 1 371 1.2E-148 T 23-04-2016 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 Gene3D G3DSA:3.40.50.1770 1 176 2.3E-57 T 23-04-2016 RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 2.9E-45 T 23-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 367 7.4E-153 T 23-04-2016 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 SMART SM01003 4 137 3.3E-75 T 23-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 SUPERFAMILY SSF51735 137 303 1.97E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS04765 7d60134aa7bdd06321b8e3ffa3fdac57 372 Gene3D G3DSA:3.40.50.1770 196 359 1.5E-26 T 23-04-2016 RD1_RS13310 504ee3d09ab5bcbca0b3e8c990064ea3 323 PANTHER PTHR10314:SF36 3 322 7.8E-142 T 23-04-2016 RD1_RS13310 504ee3d09ab5bcbca0b3e8c990064ea3 323 Gene3D G3DSA:3.40.50.1100 77 318 4.3E-68 T 23-04-2016 RD1_RS13310 504ee3d09ab5bcbca0b3e8c990064ea3 323 PANTHER PTHR10314 3 322 7.8E-142 T 23-04-2016 RD1_RS13310 504ee3d09ab5bcbca0b3e8c990064ea3 323 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 24 310 1.5E-71 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS13310 504ee3d09ab5bcbca0b3e8c990064ea3 323 SUPERFAMILY SSF53686 11 319 1.05E-86 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS06045 37d2f1d29cb7d0019de7e3efb7219b4b 168 Gene3D G3DSA:2.40.30.60 2 89 2.7E-21 T 23-04-2016 IPR002676 RimM protein GO:0006364 RD1_RS06045 37d2f1d29cb7d0019de7e3efb7219b4b 168 Pfam PF05239 PRC-barrel domain 94 167 7.3E-12 T 23-04-2016 IPR027275 PRC-barrel domain RD1_RS06045 37d2f1d29cb7d0019de7e3efb7219b4b 168 SUPERFAMILY SSF50447 4 89 7.77E-18 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RD1_RS06045 37d2f1d29cb7d0019de7e3efb7219b4b 168 PANTHER PTHR33692 1 168 1.9E-41 T 23-04-2016 RD1_RS06045 37d2f1d29cb7d0019de7e3efb7219b4b 168 Pfam PF01782 RimM N-terminal domain 7 87 2.6E-16 T 23-04-2016 IPR002676 RimM protein GO:0006364 RD1_RS06045 37d2f1d29cb7d0019de7e3efb7219b4b 168 Gene3D G3DSA:2.30.30.240 96 166 1.8E-20 T 23-04-2016 RD1_RS06045 37d2f1d29cb7d0019de7e3efb7219b4b 168 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 6 166 7.2E-42 T 23-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RD1_RS06045 37d2f1d29cb7d0019de7e3efb7219b4b 168 SUPERFAMILY SSF50346 96 166 5.34E-18 T 23-04-2016 IPR011033 PRC-barrel-like RD1_RS06045 37d2f1d29cb7d0019de7e3efb7219b4b 168 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 5 167 23.405 T 23-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RD1_RS00325 adad2485ce975365e422bc59cd2950c1 468 SUPERFAMILY SSF100950 63 87 4.6E-40 T 23-04-2016 RD1_RS00325 adad2485ce975365e422bc59cd2950c1 468 SUPERFAMILY SSF100950 133 294 4.6E-40 T 23-04-2016 RD1_RS00325 adad2485ce975365e422bc59cd2950c1 468 Gene3D G3DSA:3.40.50.10420 188 294 1.6E-43 T 23-04-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain RD1_RS00325 adad2485ce975365e422bc59cd2950c1 468 Gene3D G3DSA:3.40.50.10420 63 126 1.6E-43 T 23-04-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain RD1_RS00325 adad2485ce975365e422bc59cd2950c1 468 Pfam PF11870 Domain of unknown function (DUF3390) 399 466 2.5E-9 T 23-04-2016 IPR024569 4Fe-4S binding protein, C-terminal RD1_RS00325 adad2485ce975365e422bc59cd2950c1 468 Pfam PF02589 Uncharacterised ACR, YkgG family COG1556 68 293 4.7E-54 T 23-04-2016 IPR003741 LUD domain RD1_RS00325 adad2485ce975365e422bc59cd2950c1 468 SUPERFAMILY SSF46548 267 394 1.31E-19 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RD1_RS00325 adad2485ce975365e422bc59cd2950c1 468 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 311 322 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS00325 adad2485ce975365e422bc59cd2950c1 468 PANTHER PTHR32479 24 468 2.1E-159 T 23-04-2016 RD1_RS00325 adad2485ce975365e422bc59cd2950c1 468 TIGRFAM TIGR00273 TIGR00273: iron-sulfur cluster-binding protein 18 452 5.0E-138 T 23-04-2016 IPR004452 4Fe-4S binding protein GO:0019516 RD1_RS00325 adad2485ce975365e422bc59cd2950c1 468 Gene3D G3DSA:1.10.1060.10 305 392 9.0E-14 T 23-04-2016 RD1_RS00325 adad2485ce975365e422bc59cd2950c1 468 PANTHER PTHR32479:SF10 24 468 2.1E-159 T 23-04-2016 RD1_RS00325 adad2485ce975365e422bc59cd2950c1 468 Pfam PF13183 4Fe-4S dicluster domain 309 375 9.6E-12 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS03025 4fedeb83f65e8c8d6600ffcbf3a35e30 167 Pfam PF11233 Protein of unknown function (DUF3035) 12 164 8.8E-50 T 23-04-2016 IPR021395 Protein of unknown function DUF3035 RD1_RS14825 7b31d942c5072d0f984b36b0948c0cc4 294 Pfam PF01553 Acyltransferase 75 203 4.5E-8 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RD1_RS14825 7b31d942c5072d0f984b36b0948c0cc4 294 SMART SM00563 84 207 4.5E-4 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RD1_RS14825 7b31d942c5072d0f984b36b0948c0cc4 294 Gene3D G3DSA:3.40.1130.10 76 272 7.5E-6 T 23-04-2016 RD1_RS14825 7b31d942c5072d0f984b36b0948c0cc4 294 SUPERFAMILY SSF69593 75 270 5.36E-12 T 23-04-2016 RD1_RS14825 7b31d942c5072d0f984b36b0948c0cc4 294 PANTHER PTHR37323 55 252 1.7E-17 T 23-04-2016 RD1_RS14825 7b31d942c5072d0f984b36b0948c0cc4 294 PANTHER PTHR37323:SF1 55 252 1.7E-17 T 23-04-2016 RD1_RS12480 76db449bf3da4204701d299ff6a54625 682 Gene3D G3DSA:3.10.20.30 6 114 1.4E-18 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS12480 76db449bf3da4204701d299ff6a54625 682 Pfam PF14574 Domain of unknown function (DUF4445) 215 638 1.1E-135 T 23-04-2016 IPR027980 Protein of unknown function DUF4445 RD1_RS12480 76db449bf3da4204701d299ff6a54625 682 SUPERFAMILY SSF54292 6 111 7.72E-18 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS05575 4918283f6804bda43e4ba91641960cdb 348 PANTHER PTHR19375 11 331 3.6E-153 T 23-04-2016 RD1_RS05575 4918283f6804bda43e4ba91641960cdb 348 Pfam PF06723 MreB/Mbl protein 13 340 4.0E-143 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RD1_RS05575 4918283f6804bda43e4ba91641960cdb 348 Gene3D G3DSA:3.30.420.40 268 321 7.6E-31 T 23-04-2016 RD1_RS05575 4918283f6804bda43e4ba91641960cdb 348 Gene3D G3DSA:3.30.420.40 163 189 7.6E-31 T 23-04-2016 RD1_RS05575 4918283f6804bda43e4ba91641960cdb 348 SUPERFAMILY SSF53067 11 151 5.83E-36 T 23-04-2016 RD1_RS05575 4918283f6804bda43e4ba91641960cdb 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 2.8E-54 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RD1_RS05575 4918283f6804bda43e4ba91641960cdb 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 305 331 2.8E-54 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RD1_RS05575 4918283f6804bda43e4ba91641960cdb 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 190 210 2.8E-54 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RD1_RS05575 4918283f6804bda43e4ba91641960cdb 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 2.8E-54 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RD1_RS05575 4918283f6804bda43e4ba91641960cdb 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 135 154 2.8E-54 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RD1_RS05575 4918283f6804bda43e4ba91641960cdb 348 Gene3D G3DSA:3.90.640.10 190 264 2.6E-29 T 23-04-2016 RD1_RS05575 4918283f6804bda43e4ba91641960cdb 348 Gene3D G3DSA:3.30.420.40 12 162 2.4E-41 T 23-04-2016 RD1_RS05575 4918283f6804bda43e4ba91641960cdb 348 SUPERFAMILY SSF53067 153 334 2.09E-45 T 23-04-2016 RD1_RS05575 4918283f6804bda43e4ba91641960cdb 348 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 11 341 2.4E-148 T 23-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RD1_RS05575 4918283f6804bda43e4ba91641960cdb 348 PANTHER PTHR19375:SF117 11 331 3.6E-153 T 23-04-2016 RD1_RS02095 f9347d26ab8724aa7ad93802da6dbb2f 106 PANTHER PTHR10438 7 106 5.1E-38 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RD1_RS02095 f9347d26ab8724aa7ad93802da6dbb2f 106 PRINTS PR00421 Thioredoxin family signature 70 81 2.7E-8 T 23-04-2016 RD1_RS02095 f9347d26ab8724aa7ad93802da6dbb2f 106 PRINTS PR00421 Thioredoxin family signature 30 39 2.7E-8 T 23-04-2016 RD1_RS02095 f9347d26ab8724aa7ad93802da6dbb2f 106 PRINTS PR00421 Thioredoxin family signature 22 30 2.7E-8 T 23-04-2016 RD1_RS02095 f9347d26ab8724aa7ad93802da6dbb2f 106 PIRSF PIRSF000077 1 106 4.7E-42 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RD1_RS02095 f9347d26ab8724aa7ad93802da6dbb2f 106 Pfam PF00085 Thioredoxin 4 104 9.0E-34 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 RD1_RS02095 f9347d26ab8724aa7ad93802da6dbb2f 106 SUPERFAMILY SSF52833 4 105 5.05E-38 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS02095 f9347d26ab8724aa7ad93802da6dbb2f 106 Gene3D G3DSA:3.40.30.10 5 105 6.2E-37 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS02095 f9347d26ab8724aa7ad93802da6dbb2f 106 ProSitePatterns PS00194 Thioredoxin family active site. 23 41 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RD1_RS02095 f9347d26ab8724aa7ad93802da6dbb2f 106 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 105 2.5E-37 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RD1_RS03955 c764cc023e845dcbd80403d8ce2d9dd8 227 PANTHER PTHR28047:SF1 1 224 2.6E-58 T 23-04-2016 RD1_RS03955 c764cc023e845dcbd80403d8ce2d9dd8 227 PANTHER PTHR28047 1 224 2.6E-58 T 23-04-2016 RD1_RS03955 c764cc023e845dcbd80403d8ce2d9dd8 227 Pfam PF01177 Asp/Glu/Hydantoin racemase 5 203 2.4E-11 T 23-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS01915 1cb0038bc544bd0523b847630c9aa247 329 Pfam PF01430 Hsp33 protein 11 313 2.0E-75 T 23-04-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RD1_RS01915 1cb0038bc544bd0523b847630c9aa247 329 PANTHER PTHR30111:SF1 216 329 4.2E-45 T 23-04-2016 RD1_RS01915 1cb0038bc544bd0523b847630c9aa247 329 PANTHER PTHR30111:SF1 7 196 4.2E-45 T 23-04-2016 RD1_RS01915 1cb0038bc544bd0523b847630c9aa247 329 PIRSF PIRSF005261 1 326 1.0E-82 T 23-04-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RD1_RS01915 1cb0038bc544bd0523b847630c9aa247 329 SUPERFAMILY SSF64397 10 273 8.76E-60 T 23-04-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 RD1_RS01915 1cb0038bc544bd0523b847630c9aa247 329 Gene3D G3DSA:1.10.287.480 218 267 3.3E-14 T 23-04-2016 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain RD1_RS01915 1cb0038bc544bd0523b847630c9aa247 329 PANTHER PTHR30111 216 329 4.2E-45 T 23-04-2016 RD1_RS01915 1cb0038bc544bd0523b847630c9aa247 329 PANTHER PTHR30111 7 196 4.2E-45 T 23-04-2016 RD1_RS01915 1cb0038bc544bd0523b847630c9aa247 329 SUPERFAMILY SSF118352 265 318 1.7E-13 T 23-04-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 RD1_RS01915 1cb0038bc544bd0523b847630c9aa247 329 Gene3D G3DSA:3.90.1280.10 268 318 8.4E-16 T 23-04-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 RD1_RS01915 1cb0038bc544bd0523b847630c9aa247 329 Gene3D G3DSA:3.55.30.10 7 194 1.2E-58 T 23-04-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 RD1_RS12625 88cce2a928755f526e19549b91b52f5d 290 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 160 1.1E-46 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 RD1_RS12625 88cce2a928755f526e19549b91b52f5d 290 PANTHER PTHR22981:SF49 1 289 4.0E-141 T 23-04-2016 RD1_RS12625 88cce2a928755f526e19549b91b52f5d 290 SUPERFAMILY SSF48179 164 288 1.59E-41 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS12625 88cce2a928755f526e19549b91b52f5d 290 PIRSF PIRSF000103 1 290 1.9E-72 T 23-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 RD1_RS12625 88cce2a928755f526e19549b91b52f5d 290 Gene3D G3DSA:1.10.1040.10 168 287 1.9E-42 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS12625 88cce2a928755f526e19549b91b52f5d 290 PANTHER PTHR22981 1 289 4.0E-141 T 23-04-2016 RD1_RS12625 88cce2a928755f526e19549b91b52f5d 290 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 285 2.1E-35 T 23-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RD1_RS12625 88cce2a928755f526e19549b91b52f5d 290 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 23-04-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 RD1_RS12625 88cce2a928755f526e19549b91b52f5d 290 SUPERFAMILY SSF51735 2 164 2.43E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS12625 88cce2a928755f526e19549b91b52f5d 290 Gene3D G3DSA:3.40.50.720 1 167 3.4E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19280 2ad6711050d0bfed498b0c0a9510bd2a 269 PANTHER PTHR10108:SF705 36 224 1.5E-17 T 23-04-2016 RD1_RS19280 2ad6711050d0bfed498b0c0a9510bd2a 269 PANTHER PTHR10108 36 224 1.5E-17 T 23-04-2016 RD1_RS19280 2ad6711050d0bfed498b0c0a9510bd2a 269 Gene3D G3DSA:3.40.50.150 44 241 4.7E-26 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS19280 2ad6711050d0bfed498b0c0a9510bd2a 269 SUPERFAMILY SSF53335 32 256 7.17E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS19280 2ad6711050d0bfed498b0c0a9510bd2a 269 Pfam PF13649 Methyltransferase domain 61 160 1.3E-14 T 23-04-2016 RD1_RS03730 2033aba12d567bd3e4e1be3944159d21 408 Pfam PF14072 DNA-sulfur modification-associated 8 198 1.1E-15 T 23-04-2016 IPR017642 DNA sulphur modification protein DndB RD1_RS03730 2033aba12d567bd3e4e1be3944159d21 408 TIGRFAM TIGR03187 DGQHR: DGQHR domain 10 354 9.4E-69 T 23-04-2016 IPR017601 DGQHR-containing domain RD1_RS03730 2033aba12d567bd3e4e1be3944159d21 408 TIGRFAM TIGR04172 DGQHR_dnd_1: DNA phosphorothioation-associated DGQHR protein 1 7 406 1.7E-168 T 23-04-2016 IPR026440 DNA phosphorothioation-associated DGQHR protein 1 RD1_RS06645 a583568b49dc0aa2d82e0ff42e6c0cbb 122 SUPERFAMILY SSF46946 2 121 9.68E-48 T 23-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RD1_RS06645 a583568b49dc0aa2d82e0ff42e6c0cbb 122 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 23-04-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 RD1_RS06645 a583568b49dc0aa2d82e0ff42e6c0cbb 122 PANTHER PTHR10871 2 122 1.1E-65 T 23-04-2016 RD1_RS06645 a583568b49dc0aa2d82e0ff42e6c0cbb 122 Gene3D G3DSA:1.10.8.50 2 72 2.1E-30 T 23-04-2016 RD1_RS06645 a583568b49dc0aa2d82e0ff42e6c0cbb 122 PIRSF PIRSF002134 1 122 2.2E-45 T 23-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06645 a583568b49dc0aa2d82e0ff42e6c0cbb 122 Gene3D G3DSA:4.10.910.10 73 122 1.0E-28 T 23-04-2016 IPR027437 30s ribosomal protein S13, C-terminal RD1_RS06645 a583568b49dc0aa2d82e0ff42e6c0cbb 122 Pfam PF00416 Ribosomal protein S13/S18 3 109 2.3E-31 T 23-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06645 a583568b49dc0aa2d82e0ff42e6c0cbb 122 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 120 28.769 T 23-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06645 a583568b49dc0aa2d82e0ff42e6c0cbb 122 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 115 1.1E-54 T 23-04-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS14240 83dec33329f4296018273f8efdc3014b 309 Gene3D G3DSA:1.10.3720.10 10 27 1.0E-11 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS14240 83dec33329f4296018273f8efdc3014b 309 Gene3D G3DSA:1.10.3720.10 86 304 1.0E-11 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS14240 83dec33329f4296018273f8efdc3014b 309 PANTHER PTHR30151:SF9 102 304 4.4E-44 T 23-04-2016 RD1_RS14240 83dec33329f4296018273f8efdc3014b 309 SUPERFAMILY SSF161098 104 288 8.9E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS14240 83dec33329f4296018273f8efdc3014b 309 PANTHER PTHR30151 102 304 4.4E-44 T 23-04-2016 RD1_RS14240 83dec33329f4296018273f8efdc3014b 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 298 4.0E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS14755 cf62ca1cacd6d68cf0bbc682ade7648c 390 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 170 304 3.5E-25 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS14755 cf62ca1cacd6d68cf0bbc682ade7648c 390 Gene3D G3DSA:3.40.980.10 156 317 3.3E-53 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS14755 cf62ca1cacd6d68cf0bbc682ade7648c 390 Gene3D G3DSA:2.170.190.11 44 124 2.9E-30 T 23-04-2016 RD1_RS14755 cf62ca1cacd6d68cf0bbc682ade7648c 390 Gene3D G3DSA:2.40.340.10 324 388 2.9E-4 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS14755 cf62ca1cacd6d68cf0bbc682ade7648c 390 SMART SM00852 173 310 3.0E-39 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS14755 cf62ca1cacd6d68cf0bbc682ade7648c 390 SUPERFAMILY SSF63867 324 389 1.18E-10 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS14755 cf62ca1cacd6d68cf0bbc682ade7648c 390 Gene3D G3DSA:3.90.105.10 125 155 5.4E-12 T 23-04-2016 RD1_RS14755 cf62ca1cacd6d68cf0bbc682ade7648c 390 Pfam PF00994 Probable molybdopterin binding domain 173 309 1.1E-21 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS14755 cf62ca1cacd6d68cf0bbc682ade7648c 390 Pfam PF03453 MoeA N-terminal region (domain I and II) 2 159 5.3E-32 T 23-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS14755 cf62ca1cacd6d68cf0bbc682ade7648c 390 SUPERFAMILY SSF63882 1 168 4.06E-51 T 23-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS14755 cf62ca1cacd6d68cf0bbc682ade7648c 390 SUPERFAMILY SSF53218 170 314 3.4E-38 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS14755 cf62ca1cacd6d68cf0bbc682ade7648c 390 PANTHER PTHR10192 1 374 3.5E-122 T 23-04-2016 RD1_RS14755 cf62ca1cacd6d68cf0bbc682ade7648c 390 Pfam PF03454 MoeA C-terminal region (domain IV) 324 390 7.9E-10 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS12410 b13b725596d83f503eb037215f854136 157 Pfam PF02082 Transcriptional regulator 1 83 1.5E-26 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type RD1_RS12410 b13b725596d83f503eb037215f854136 157 PANTHER PTHR33221 2 136 1.2E-42 T 23-04-2016 RD1_RS12410 b13b725596d83f503eb037215f854136 157 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 133 1.2E-35 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type RD1_RS12410 b13b725596d83f503eb037215f854136 157 SUPERFAMILY SSF46785 2 135 1.03E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS12410 b13b725596d83f503eb037215f854136 157 Gene3D G3DSA:1.10.10.10 1 135 2.0E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS12410 b13b725596d83f503eb037215f854136 157 PANTHER PTHR33221:SF1 2 136 1.2E-42 T 23-04-2016 RD1_RS08760 aab137195255c8ccdd8f8c8da226433b 444 PANTHER PTHR20852:SF7 5 444 9.9E-111 T 23-04-2016 RD1_RS08760 aab137195255c8ccdd8f8c8da226433b 444 Gene3D G3DSA:3.10.20.70 5 111 4.4E-9 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS08760 aab137195255c8ccdd8f8c8da226433b 444 SMART SM01230 108 362 9.1E-103 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS08760 aab137195255c8ccdd8f8c8da226433b 444 Gene3D G3DSA:3.30.590.10 112 428 3.9E-95 T 23-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 RD1_RS08760 aab137195255c8ccdd8f8c8da226433b 444 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 243 258 - T 23-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS08760 aab137195255c8ccdd8f8c8da226433b 444 Pfam PF00120 Glutamine synthetase, catalytic domain 109 430 2.8E-97 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS08760 aab137195255c8ccdd8f8c8da226433b 444 SUPERFAMILY SSF54368 7 107 5.75E-11 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS08760 aab137195255c8ccdd8f8c8da226433b 444 SUPERFAMILY SSF55931 109 442 3.53E-104 T 23-04-2016 RD1_RS08760 aab137195255c8ccdd8f8c8da226433b 444 PANTHER PTHR20852 5 444 9.9E-111 T 23-04-2016 RD1_RS02410 5aaeb690eea542a96df52588ad6456c8 416 SUPERFAMILY SSF53850 24 412 7.03E-58 T 23-04-2016 RD1_RS02410 5aaeb690eea542a96df52588ad6456c8 416 Gene3D G3DSA:3.40.190.10 156 342 4.6E-26 T 23-04-2016 RD1_RS02410 5aaeb690eea542a96df52588ad6456c8 416 Gene3D G3DSA:3.40.190.10 61 155 9.3E-9 T 23-04-2016 RD1_RS02410 5aaeb690eea542a96df52588ad6456c8 416 Pfam PF01547 Bacterial extracellular solute-binding protein 60 295 7.6E-27 T 23-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 RD1_RS02410 5aaeb690eea542a96df52588ad6456c8 416 PANTHER PTHR30061 22 415 2.4E-83 T 23-04-2016 RD1_RS02410 5aaeb690eea542a96df52588ad6456c8 416 PANTHER PTHR30061:SF22 22 415 2.4E-83 T 23-04-2016 RD1_RS01120 0d7bdfab7684322ecc276d6419af06f1 436 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 428 5.8E-108 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS01120 0d7bdfab7684322ecc276d6419af06f1 436 PIRSF PIRSF006066 5 434 4.0E-84 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS01120 0d7bdfab7684322ecc276d6419af06f1 436 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 423 1.8E-79 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS01120 0d7bdfab7684322ecc276d6419af06f1 436 PANTHER PTHR33362 1 431 3.4E-128 T 23-04-2016 RD1_RS01120 0d7bdfab7684322ecc276d6419af06f1 436 PANTHER PTHR33362:SF5 1 431 3.4E-128 T 23-04-2016 RD1_RS16660 52e088431c7787d7a54dcc95c8605b72 507 SUPERFAMILY SSF53850 81 501 4.69E-54 T 23-04-2016 RD1_RS16660 52e088431c7787d7a54dcc95c8605b72 507 Gene3D G3DSA:3.40.190.10 218 424 4.7E-45 T 23-04-2016 RD1_RS16660 52e088431c7787d7a54dcc95c8605b72 507 Gene3D G3DSA:3.40.190.10 97 217 3.6E-13 T 23-04-2016 RD1_RS16660 52e088431c7787d7a54dcc95c8605b72 507 PANTHER PTHR30061 10 339 8.4E-36 T 23-04-2016 RD1_RS16660 52e088431c7787d7a54dcc95c8605b72 507 PANTHER PTHR30061 355 505 8.4E-36 T 23-04-2016 RD1_RS16660 52e088431c7787d7a54dcc95c8605b72 507 PANTHER PTHR30061:SF3 10 339 8.4E-36 T 23-04-2016 RD1_RS16660 52e088431c7787d7a54dcc95c8605b72 507 PANTHER PTHR30061:SF3 355 505 8.4E-36 T 23-04-2016 RD1_RS16660 52e088431c7787d7a54dcc95c8605b72 507 Pfam PF13416 Bacterial extracellular solute-binding protein 102 424 2.8E-24 T 23-04-2016 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 267 275 - T 23-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 PANTHER PTHR10025 1 296 5.9E-164 T 23-04-2016 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 23-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 290 38.63 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 SUPERFAMILY SSF53223 1 122 1.73E-41 T 23-04-2016 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 125 288 3.1E-66 T 23-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 Gene3D G3DSA:3.40.192.10 7 139 3.0E-50 T 23-04-2016 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 Gene3D G3DSA:3.40.50.720 140 271 1.7E-55 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 1.7E-40 T 23-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 7.0E-82 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 7.0E-82 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 7.0E-82 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 246 262 7.0E-82 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 7.0E-82 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 263 281 7.0E-82 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 7.0E-82 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS09740 51b06d02221a19f0bfb2ba1bb189f1f6 300 SUPERFAMILY SSF51735 123 287 9.6E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00405 bfafe1e5c64338b3fabccce14b6d6439 429 SUPERFAMILY SSF53187 337 421 2.08E-64 T 23-04-2016 RD1_RS00405 bfafe1e5c64338b3fabccce14b6d6439 429 SUPERFAMILY SSF53187 3 198 2.08E-64 T 23-04-2016 RD1_RS00405 bfafe1e5c64338b3fabccce14b6d6439 429 Gene3D G3DSA:3.30.70.360 208 319 5.8E-13 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS00405 bfafe1e5c64338b3fabccce14b6d6439 429 Pfam PF07687 Peptidase dimerisation domain 196 318 1.7E-19 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS00405 bfafe1e5c64338b3fabccce14b6d6439 429 SUPERFAMILY SSF55031 198 329 1.15E-8 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS00405 bfafe1e5c64338b3fabccce14b6d6439 429 Pfam PF01546 Peptidase family M20/M25/M40 89 418 2.1E-39 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RD1_RS00405 bfafe1e5c64338b3fabccce14b6d6439 429 Gene3D G3DSA:3.40.630.10 10 207 1.1E-64 T 23-04-2016 RD1_RS00405 bfafe1e5c64338b3fabccce14b6d6439 429 Gene3D G3DSA:3.40.630.10 361 422 1.1E-64 T 23-04-2016 RD1_RS00405 bfafe1e5c64338b3fabccce14b6d6439 429 PANTHER PTHR11014 4 426 7.2E-71 T 23-04-2016 RD1_RS00405 bfafe1e5c64338b3fabccce14b6d6439 429 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 17 413 1.1E-75 T 23-04-2016 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase GO:0016813 RD1_RS01980 dd606041bc8226efcf97a26487225b41 354 Pfam PF01628 HrcA protein C terminal domain 115 335 4.6E-52 T 23-04-2016 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 RD1_RS01980 dd606041bc8226efcf97a26487225b41 354 SUPERFAMILY SSF55781 81 352 8.63E-55 T 23-04-2016 IPR029016 GAF domain-like RD1_RS01980 dd606041bc8226efcf97a26487225b41 354 SUPERFAMILY SSF46785 10 91 1.96E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS01980 dd606041bc8226efcf97a26487225b41 354 Gene3D G3DSA:3.30.450.40 185 352 3.0E-33 T 23-04-2016 IPR029016 GAF domain-like RD1_RS01980 dd606041bc8226efcf97a26487225b41 354 Gene3D G3DSA:1.10.10.10 6 91 9.0E-33 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS01980 dd606041bc8226efcf97a26487225b41 354 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 10 343 27.65 T 23-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RD1_RS01980 dd606041bc8226efcf97a26487225b41 354 PANTHER PTHR34824 1 354 1.4E-95 T 23-04-2016 RD1_RS01980 dd606041bc8226efcf97a26487225b41 354 PIRSF PIRSF005485 8 354 3.1E-108 T 23-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RD1_RS01980 dd606041bc8226efcf97a26487225b41 354 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 12 349 1.6E-91 T 23-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RD1_RS05855 ba053f396fb715cb5c3bad7eb8496582 278 SUPERFAMILY SSF52402 153 277 6.11E-18 T 23-04-2016 RD1_RS05855 ba053f396fb715cb5c3bad7eb8496582 278 Gene3D G3DSA:3.40.50.620 138 278 3.7E-18 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS05855 ba053f396fb715cb5c3bad7eb8496582 278 PRINTS PR01438 Universal stress protein signature 256 278 4.94E-5 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS05855 ba053f396fb715cb5c3bad7eb8496582 278 PRINTS PR01438 Universal stress protein signature 238 250 4.94E-5 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS05855 ba053f396fb715cb5c3bad7eb8496582 278 SUPERFAMILY SSF52402 1 147 1.09E-7 T 23-04-2016 RD1_RS05855 ba053f396fb715cb5c3bad7eb8496582 278 Pfam PF00582 Universal stress protein family 157 277 1.4E-6 T 23-04-2016 IPR006016 UspA GO:0006950 RD1_RS13790 6e74db88a18fdae14f603199648921b2 351 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 347 43.767 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RD1_RS13790 6e74db88a18fdae14f603199648921b2 351 PANTHER PTHR30307:SF0 2 351 2.7E-149 T 23-04-2016 RD1_RS13790 6e74db88a18fdae14f603199648921b2 351 SUPERFAMILY SSF111337 1 346 3.79E-124 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RD1_RS13790 6e74db88a18fdae14f603199648921b2 351 Pfam PF02547 Queuosine biosynthesis protein 3 346 6.0E-126 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RD1_RS13790 6e74db88a18fdae14f603199648921b2 351 Gene3D G3DSA:3.40.1780.10 1 60 9.1E-95 T 23-04-2016 RD1_RS13790 6e74db88a18fdae14f603199648921b2 351 Gene3D G3DSA:3.40.1780.10 185 347 9.1E-95 T 23-04-2016 RD1_RS13790 6e74db88a18fdae14f603199648921b2 351 PANTHER PTHR30307 2 351 2.7E-149 T 23-04-2016 RD1_RS13790 6e74db88a18fdae14f603199648921b2 351 Gene3D G3DSA:2.40.10.240 62 142 5.1E-19 T 23-04-2016 RD1_RS13790 6e74db88a18fdae14f603199648921b2 351 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 346 2.3E-114 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RD1_RS11950 dcd68c0c2f5e03b9e2405ab6b79634e4 260 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 105 138 0.0014 T 23-04-2016 IPR001451 Hexapeptide repeat RD1_RS11950 dcd68c0c2f5e03b9e2405ab6b79634e4 260 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 8 40 8.5E-5 T 23-04-2016 IPR001451 Hexapeptide repeat RD1_RS11950 dcd68c0c2f5e03b9e2405ab6b79634e4 260 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 140 169 0.0019 T 23-04-2016 IPR001451 Hexapeptide repeat RD1_RS11950 dcd68c0c2f5e03b9e2405ab6b79634e4 260 PANTHER PTHR23416 1 249 2.4E-106 T 23-04-2016 RD1_RS11950 dcd68c0c2f5e03b9e2405ab6b79634e4 260 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 176 254 1.5E-20 T 23-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RD1_RS11950 dcd68c0c2f5e03b9e2405ab6b79634e4 260 PANTHER PTHR23416:SF8 1 249 2.4E-106 T 23-04-2016 RD1_RS11950 dcd68c0c2f5e03b9e2405ab6b79634e4 260 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 4 255 4.8E-97 T 23-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RD1_RS11950 dcd68c0c2f5e03b9e2405ab6b79634e4 260 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 1 258 41.886 T 23-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RD1_RS11950 dcd68c0c2f5e03b9e2405ab6b79634e4 260 SUPERFAMILY SSF51161 4 256 6.68E-70 T 23-04-2016 IPR011004 Trimeric LpxA-like RD1_RS11950 dcd68c0c2f5e03b9e2405ab6b79634e4 260 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 16 44 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RD1_RS11950 dcd68c0c2f5e03b9e2405ab6b79634e4 260 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 149 177 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RD1_RS11950 dcd68c0c2f5e03b9e2405ab6b79634e4 260 PIRSF PIRSF000456 1 260 5.0E-102 T 23-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RD1_RS11950 dcd68c0c2f5e03b9e2405ab6b79634e4 260 Gene3D G3DSA:1.20.1180.10 193 253 2.4E-15 T 23-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RD1_RS11950 dcd68c0c2f5e03b9e2405ab6b79634e4 260 Gene3D G3DSA:2.160.10.10 3 185 7.4E-44 T 23-04-2016 RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 SUPERFAMILY SSF53474 187 380 7.18E-9 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 SUPERFAMILY SSF53474 562 625 1.54E-20 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 SUPERFAMILY SSF53474 90 136 1.54E-20 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 SUPERFAMILY SSF53474 389 488 1.54E-20 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 SUPERFAMILY SSF53474 175 242 1.54E-20 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 Pfam PF00561 alpha/beta hydrolase fold 93 242 5.0E-12 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 PANTHER PTHR10992 186 273 5.9E-15 T 23-04-2016 RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 PANTHER PTHR10992 396 437 5.9E-15 T 23-04-2016 RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 PANTHER PTHR10992 566 629 5.9E-15 T 23-04-2016 RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 PANTHER PTHR10992 345 351 5.9E-15 T 23-04-2016 RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 PANTHER PTHR10992 92 143 5.9E-15 T 23-04-2016 RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 Pfam PF08386 TAP-like protein 547 629 1.7E-7 T 23-04-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 PANTHER PTHR10992:SF874 186 273 5.9E-15 T 23-04-2016 RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 PANTHER PTHR10992:SF874 396 437 5.9E-15 T 23-04-2016 RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 PANTHER PTHR10992:SF874 566 629 5.9E-15 T 23-04-2016 RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 PANTHER PTHR10992:SF874 345 351 5.9E-15 T 23-04-2016 RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 PANTHER PTHR10992:SF874 92 143 5.9E-15 T 23-04-2016 RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 Gene3D G3DSA:3.40.50.1820 507 626 1.3E-42 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 Gene3D G3DSA:3.40.50.1820 58 141 1.3E-42 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS12320 fdd205730c675dfaca8eaea6113a3f2e 650 Gene3D G3DSA:3.40.50.1820 187 309 1.3E-42 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS02700 2110daa1db78d1577756a7380fc43aa2 296 Pfam PF00581 Rhodanese-like domain 114 208 6.9E-7 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS02700 2110daa1db78d1577756a7380fc43aa2 296 Hamap MF_00469 UPF0176 protein YceA [yceA]. 1 252 40.515 T 23-04-2016 IPR020936 Uncharacterised protein family UPF0176 RD1_RS02700 2110daa1db78d1577756a7380fc43aa2 296 PANTHER PTHR22778:SF12 1 288 1.6E-92 T 23-04-2016 RD1_RS02700 2110daa1db78d1577756a7380fc43aa2 296 SMART SM00450 111 212 4.0E-16 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS02700 2110daa1db78d1577756a7380fc43aa2 296 SUPERFAMILY SSF52821 88 223 1.37E-28 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS02700 2110daa1db78d1577756a7380fc43aa2 296 Gene3D G3DSA:3.40.250.10 102 224 8.8E-36 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS02700 2110daa1db78d1577756a7380fc43aa2 296 PANTHER PTHR22778 1 288 1.6E-92 T 23-04-2016 RD1_RS01510 04701dca7756ee5bea4a6769fab24469 307 PIRSF PIRSF001439 31 307 4.2E-58 T 23-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin RD1_RS01510 04701dca7756ee5bea4a6769fab24469 307 SUPERFAMILY SSF51735 4 305 5.46E-82 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS01510 04701dca7756ee5bea4a6769fab24469 307 Gene3D G3DSA:3.40.50.720 134 286 1.6E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS01510 04701dca7756ee5bea4a6769fab24469 307 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 59 305 1.4E-48 T 23-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin RD1_RS01510 04701dca7756ee5bea4a6769fab24469 307 PANTHER PTHR13812 47 305 2.4E-59 T 23-04-2016 RD1_RS01510 04701dca7756ee5bea4a6769fab24469 307 Gene3D G3DSA:3.30.1780.10 11 133 2.4E-26 T 23-04-2016 IPR023401 Ornithine cyclodeaminase, N-terminal RD1_RS01510 04701dca7756ee5bea4a6769fab24469 307 PANTHER PTHR13812:SF19 47 305 2.4E-59 T 23-04-2016 RD1_RS01450 903a992effa5f70e9f7ba8adcbf58ce6 325 PANTHER PTHR40400 1 325 7.9E-86 T 23-04-2016 IPR010293 Na+-dependent bicarbonate transporter superfamily RD1_RS01450 903a992effa5f70e9f7ba8adcbf58ce6 325 Pfam PF05982 Na+-dependent bicarbonate transporter superfamily 15 319 4.2E-109 T 23-04-2016 IPR010293 Na+-dependent bicarbonate transporter superfamily RD1_RS10700 dacfe48cdd405a2a909b1d7faea9d233 326 Gene3D G3DSA:1.10.3720.10 97 322 3.0E-51 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10700 dacfe48cdd405a2a909b1d7faea9d233 326 PANTHER PTHR30193 26 326 3.3E-90 T 23-04-2016 RD1_RS10700 dacfe48cdd405a2a909b1d7faea9d233 326 SUPERFAMILY SSF161098 91 313 1.96E-46 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10700 dacfe48cdd405a2a909b1d7faea9d233 326 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 311 6.1E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10700 dacfe48cdd405a2a909b1d7faea9d233 326 PANTHER PTHR30193:SF18 26 326 3.3E-90 T 23-04-2016 RD1_RS13915 fbe66e9949e7a3335cb402aee940f278 392 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 31 389 1.2E-109 T 23-04-2016 IPR006444 Phage major capsid protein, HK97 RD1_RS13915 fbe66e9949e7a3335cb402aee940f278 392 SUPERFAMILY SSF56563 100 391 1.96E-79 T 23-04-2016 RD1_RS13915 fbe66e9949e7a3335cb402aee940f278 392 Pfam PF05065 Phage capsid family 108 388 7.1E-86 T 23-04-2016 IPR024455 Phage capsid RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 Pfam PF11638 DnaA N-terminal domain 4 62 3.2E-13 T 23-04-2016 IPR024633 DnaA N-terminal domain RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 PANTHER PTHR30050:SF2 1 454 4.5E-179 T 23-04-2016 RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 SMART SM00760 362 431 7.3E-42 T 23-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 SUPERFAMILY SSF52540 113 331 1.33E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 SUPERFAMILY SSF48295 351 453 6.28E-36 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 6 452 4.7E-165 T 23-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 453 31.191 T 23-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 Gene3D G3DSA:1.10.8.60 280 353 4.2E-24 T 23-04-2016 RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 PANTHER PTHR30050 1 454 4.5E-179 T 23-04-2016 RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 Gene3D G3DSA:3.40.50.300 102 278 3.5E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 ProSitePatterns PS01008 DnaA protein signature. 412 431 - T 23-04-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 363 431 3.0E-29 T 23-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 245 272 1.2E-45 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 147 167 1.2E-45 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 412 431 1.2E-45 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 179 193 1.2E-45 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 211 225 1.2E-45 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 Pfam PF00308 Bacterial dnaA protein 114 335 3.3E-86 T 23-04-2016 IPR013317 Chromosomal replication initiator protein DnaA RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 SMART SM00382 146 276 1.4E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS00960 7d6610d96b948bd5ca852c09d74f1873 454 Gene3D G3DSA:1.10.1750.10 354 453 1.0E-37 T 23-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RD1_RS18905 8ebc8df571a76f61f1b2f3919f880e59 344 PANTHER PTHR30222 6 344 2.4E-90 T 23-04-2016 RD1_RS18905 8ebc8df571a76f61f1b2f3919f880e59 344 Pfam PF13416 Bacterial extracellular solute-binding protein 40 301 9.6E-18 T 23-04-2016 RD1_RS18905 8ebc8df571a76f61f1b2f3919f880e59 344 Gene3D G3DSA:3.40.190.10 157 268 1.2E-12 T 23-04-2016 RD1_RS18905 8ebc8df571a76f61f1b2f3919f880e59 344 PANTHER PTHR30222:SF9 6 344 2.4E-90 T 23-04-2016 RD1_RS18905 8ebc8df571a76f61f1b2f3919f880e59 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 203 222 1.0E-26 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18905 8ebc8df571a76f61f1b2f3919f880e59 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 166 185 1.0E-26 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18905 8ebc8df571a76f61f1b2f3919f880e59 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 121 137 1.0E-26 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18905 8ebc8df571a76f61f1b2f3919f880e59 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 46 67 1.0E-26 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18905 8ebc8df571a76f61f1b2f3919f880e59 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 247 266 1.0E-26 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18905 8ebc8df571a76f61f1b2f3919f880e59 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 30 46 1.0E-26 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18905 8ebc8df571a76f61f1b2f3919f880e59 344 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 74 88 1.0E-26 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18905 8ebc8df571a76f61f1b2f3919f880e59 344 PIRSF PIRSF019574 1 344 5.8E-80 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18905 8ebc8df571a76f61f1b2f3919f880e59 344 SUPERFAMILY SSF53850 24 343 9.06E-65 T 23-04-2016 RD1_RS18905 8ebc8df571a76f61f1b2f3919f880e59 344 Gene3D G3DSA:3.40.190.10 23 130 2.2E-42 T 23-04-2016 RD1_RS18905 8ebc8df571a76f61f1b2f3919f880e59 344 Gene3D G3DSA:3.40.190.10 269 308 2.2E-42 T 23-04-2016 RD1_RS03050 f44b22be610d6e9a2093dc7a1f257775 610 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 229 345 6.2E-35 T 23-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 RD1_RS03050 f44b22be610d6e9a2093dc7a1f257775 610 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 104 110 - T 23-04-2016 IPR014762 DNA mismatch repair, conserved site RD1_RS03050 f44b22be610d6e9a2093dc7a1f257775 610 Pfam PF08676 MutL C terminal dimerisation domain 420 565 9.3E-48 T 23-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RD1_RS03050 f44b22be610d6e9a2093dc7a1f257775 610 Gene3D G3DSA:3.30.565.10 14 217 3.4E-67 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS03050 f44b22be610d6e9a2093dc7a1f257775 610 SUPERFAMILY SSF54211 224 346 3.75E-34 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS03050 f44b22be610d6e9a2093dc7a1f257775 610 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 15 326 5.0E-89 T 23-04-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 RD1_RS03050 f44b22be610d6e9a2093dc7a1f257775 610 SMART SM01340 228 346 8.2E-57 T 23-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 RD1_RS03050 f44b22be610d6e9a2093dc7a1f257775 610 PANTHER PTHR10073 15 607 2.8E-144 T 23-04-2016 RD1_RS03050 f44b22be610d6e9a2093dc7a1f257775 610 SUPERFAMILY SSF118116 419 609 6.8E-59 T 23-04-2016 RD1_RS03050 f44b22be610d6e9a2093dc7a1f257775 610 Gene3D G3DSA:3.30.230.10 233 345 1.5E-34 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD1_RS03050 f44b22be610d6e9a2093dc7a1f257775 610 SUPERFAMILY SSF55874 15 204 8.12E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS03050 f44b22be610d6e9a2093dc7a1f257775 610 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 36 128 3.2E-9 T 23-04-2016 RD1_RS03050 f44b22be610d6e9a2093dc7a1f257775 610 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 13 607 26.39 T 23-04-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 RD1_RS03050 f44b22be610d6e9a2093dc7a1f257775 610 SMART SM00853 424 567 1.6E-53 T 23-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RD1_RS17185 a8dd3b6b0fe3486bef75fa1c6430cae8 484 PANTHER PTHR36509 40 483 1.3E-89 T 23-04-2016 RD1_RS17185 a8dd3b6b0fe3486bef75fa1c6430cae8 484 PANTHER PTHR36509:SF2 40 483 1.3E-89 T 23-04-2016 RD1_RS17185 a8dd3b6b0fe3486bef75fa1c6430cae8 484 Gene3D G3DSA:2.60.40.1610 98 212 3.2E-19 T 23-04-2016 IPR010679 Domain of unknown function DUF1254 RD1_RS17185 a8dd3b6b0fe3486bef75fa1c6430cae8 484 Gene3D G3DSA:2.60.120.600 317 481 3.4E-49 T 23-04-2016 IPR010621 Domain of unknown function DUF1214 RD1_RS17185 a8dd3b6b0fe3486bef75fa1c6430cae8 484 SUPERFAMILY SSF160935 5 480 1.83E-111 T 23-04-2016 RD1_RS17185 a8dd3b6b0fe3486bef75fa1c6430cae8 484 Pfam PF06863 Protein of unknown function (DUF1254) 84 215 2.0E-40 T 23-04-2016 IPR010679 Domain of unknown function DUF1254 RD1_RS17185 a8dd3b6b0fe3486bef75fa1c6430cae8 484 Gene3D G3DSA:1.10.3360.10 213 315 8.4E-6 T 23-04-2016 IPR023289 VPA0735-like domain RD1_RS17185 a8dd3b6b0fe3486bef75fa1c6430cae8 484 Pfam PF06742 Protein of unknown function (DUF1214) 356 466 1.5E-33 T 23-04-2016 IPR010621 Domain of unknown function DUF1214 RD1_RS11120 de082a6e49a419b11e5a6f9eb126785e 340 PANTHER PTHR10584 161 338 6.7E-26 T 23-04-2016 RD1_RS11120 de082a6e49a419b11e5a6f9eb126785e 340 PANTHER PTHR10584 3 131 6.7E-26 T 23-04-2016 RD1_RS11120 de082a6e49a419b11e5a6f9eb126785e 340 SUPERFAMILY SSF53613 144 323 4.33E-44 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS11120 de082a6e49a419b11e5a6f9eb126785e 340 SUPERFAMILY SSF53613 4 108 4.33E-44 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS11120 de082a6e49a419b11e5a6f9eb126785e 340 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 275 288 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RD1_RS11120 de082a6e49a419b11e5a6f9eb126785e 340 Pfam PF00294 pfkB family carbohydrate kinase 189 323 6.2E-21 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RD1_RS11120 de082a6e49a419b11e5a6f9eb126785e 340 Gene3D G3DSA:3.40.1190.20 148 329 4.9E-47 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS11120 de082a6e49a419b11e5a6f9eb126785e 340 Gene3D G3DSA:3.40.1190.20 4 107 4.9E-47 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS15035 095602b7b8ad12761bf7a8c1bc40505c 138 Pfam PF02627 Carboxymuconolactone decarboxylase family 49 129 1.8E-12 T 23-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RD1_RS15035 095602b7b8ad12761bf7a8c1bc40505c 138 SUPERFAMILY SSF69118 17 135 6.33E-25 T 23-04-2016 IPR029032 AhpD-like RD1_RS15035 095602b7b8ad12761bf7a8c1bc40505c 138 Gene3D G3DSA:1.20.1290.10 17 136 1.4E-19 T 23-04-2016 IPR029032 AhpD-like RD1_RS04905 5e3b7d21f93509a7fbc5dd0461b50743 422 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 410 6.2E-101 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RD1_RS04905 5e3b7d21f93509a7fbc5dd0461b50743 422 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 419 1.5E-167 T 23-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS04905 5e3b7d21f93509a7fbc5dd0461b50743 422 PANTHER PTHR21090:SF19 1 422 3.6E-175 T 23-04-2016 RD1_RS04905 5e3b7d21f93509a7fbc5dd0461b50743 422 Gene3D G3DSA:3.65.10.10 21 223 6.0E-70 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RD1_RS04905 5e3b7d21f93509a7fbc5dd0461b50743 422 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 420 43.972 T 23-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS04905 5e3b7d21f93509a7fbc5dd0461b50743 422 Gene3D G3DSA:3.65.10.10 224 420 3.0E-55 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RD1_RS04905 5e3b7d21f93509a7fbc5dd0461b50743 422 PANTHER PTHR21090 1 422 3.6E-175 T 23-04-2016 RD1_RS04905 5e3b7d21f93509a7fbc5dd0461b50743 422 SUPERFAMILY SSF55205 1 420 4.25E-133 T 23-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 SUPERFAMILY SSF51905 2 335 2.87E-65 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 Gene3D G3DSA:3.50.50.60 140 331 2.4E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 Gene3D G3DSA:3.50.50.60 5 139 1.2E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 345 453 2.2E-34 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 23-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PANTHER PTHR22912 3 457 1.0E-191 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 Gene3D G3DSA:3.30.390.30 332 463 3.3E-45 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 6 464 3.4E-170 T 23-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 5.5E-64 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 341 362 5.5E-64 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 428 448 5.5E-64 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 139 148 5.5E-64 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 263 277 5.5E-64 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 5.5E-64 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 406 421 5.5E-64 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 5.5E-64 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 175 200 5.5E-64 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PIRSF PIRSF000350 1 462 5.7E-80 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 SUPERFAMILY SSF55424 344 463 6.87E-38 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PANTHER PTHR22912:SF125 3 457 1.0E-191 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 325 9.8E-66 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 3.0E-36 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 3.0E-36 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 278 3.0E-36 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 136 154 3.0E-36 T 23-04-2016 RD1_RS13775 1b63272138430c3e73456c30c3a9bb9a 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 175 193 3.0E-36 T 23-04-2016 RD1_RS10635 4b55977464d870be96e141a5dfe7204e 366 Gene3D G3DSA:3.30.360.10 142 267 1.5E-29 T 23-04-2016 RD1_RS10635 4b55977464d870be96e141a5dfe7204e 366 Gene3D G3DSA:3.30.360.10 310 365 1.5E-29 T 23-04-2016 RD1_RS10635 4b55977464d870be96e141a5dfe7204e 366 PANTHER PTHR22604:SF123 1 365 3.6E-74 T 23-04-2016 RD1_RS10635 4b55977464d870be96e141a5dfe7204e 366 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 124 5.9E-20 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RD1_RS10635 4b55977464d870be96e141a5dfe7204e 366 SUPERFAMILY SSF55347 147 286 1.96E-22 T 23-04-2016 RD1_RS10635 4b55977464d870be96e141a5dfe7204e 366 SUPERFAMILY SSF51735 4 138 2.02E-29 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS10635 4b55977464d870be96e141a5dfe7204e 366 PANTHER PTHR22604 1 365 3.6E-74 T 23-04-2016 RD1_RS10635 4b55977464d870be96e141a5dfe7204e 366 Gene3D G3DSA:3.40.50.720 3 141 1.3E-27 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS10635 4b55977464d870be96e141a5dfe7204e 366 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 152 242 1.3E-7 T 23-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS03125 8bd9af530faf7e8aa37ba480ba8296af 389 SMART SM00922 151 247 8.5E-21 T 23-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RD1_RS03125 8bd9af530faf7e8aa37ba480ba8296af 389 Gene3D G3DSA:3.30.390.10 1 132 3.2E-42 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RD1_RS03125 8bd9af530faf7e8aa37ba480ba8296af 389 Pfam PF13378 Enolase C-terminal domain-like 156 380 9.8E-55 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS03125 8bd9af530faf7e8aa37ba480ba8296af 389 SUPERFAMILY SSF51604 114 386 2.75E-66 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS03125 8bd9af530faf7e8aa37ba480ba8296af 389 PANTHER PTHR13794 1 385 2.2E-85 T 23-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 RD1_RS03125 8bd9af530faf7e8aa37ba480ba8296af 389 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 28 126 1.4E-17 T 23-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RD1_RS03125 8bd9af530faf7e8aa37ba480ba8296af 389 PANTHER PTHR13794:SF4 1 385 2.2E-85 T 23-04-2016 RD1_RS03125 8bd9af530faf7e8aa37ba480ba8296af 389 Gene3D G3DSA:3.20.20.120 133 386 8.6E-79 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS03125 8bd9af530faf7e8aa37ba480ba8296af 389 SUPERFAMILY SSF54826 1 130 8.49E-33 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RD1_RS00970 d96ed77bdf0bbdfdac79a6d7aa2430e1 366 SMART SM00382 24 356 0.0015 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS00970 d96ed77bdf0bbdfdac79a6d7aa2430e1 366 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 366 80.339 T 23-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RD1_RS00970 d96ed77bdf0bbdfdac79a6d7aa2430e1 366 Pfam PF02463 RecF/RecN/SMC N terminal domain 5 339 1.6E-16 T 23-04-2016 IPR003395 RecF/RecN/SMC, N-terminal RD1_RS00970 d96ed77bdf0bbdfdac79a6d7aa2430e1 366 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 4 341 1.9E-47 T 23-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RD1_RS00970 d96ed77bdf0bbdfdac79a6d7aa2430e1 366 SUPERFAMILY SSF52540 4 346 5.72E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00970 d96ed77bdf0bbdfdac79a6d7aa2430e1 366 ProSitePatterns PS00618 RecF protein signature 2. 303 321 - T 23-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 RD1_RS00970 d96ed77bdf0bbdfdac79a6d7aa2430e1 366 PANTHER PTHR32182:SF0 1 343 1.2E-29 T 23-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RD1_RS00970 d96ed77bdf0bbdfdac79a6d7aa2430e1 366 Gene3D G3DSA:3.40.50.300 234 365 1.9E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00970 d96ed77bdf0bbdfdac79a6d7aa2430e1 366 Gene3D G3DSA:3.40.50.300 4 173 1.9E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00970 d96ed77bdf0bbdfdac79a6d7aa2430e1 366 PANTHER PTHR32182 1 343 1.2E-29 T 23-04-2016 RD1_RS00180 80e857f79d04a9ba208bd8e3dcc27c55 305 Gene3D G3DSA:1.25.40.10 219 304 2.2E-30 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS00180 80e857f79d04a9ba208bd8e3dcc27c55 305 SUPERFAMILY SSF52833 13 122 2.23E-30 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS00180 80e857f79d04a9ba208bd8e3dcc27c55 305 PRINTS PR00421 Thioredoxin family signature 45 54 1.9E-6 T 23-04-2016 RD1_RS00180 80e857f79d04a9ba208bd8e3dcc27c55 305 PRINTS PR00421 Thioredoxin family signature 37 45 1.9E-6 T 23-04-2016 RD1_RS00180 80e857f79d04a9ba208bd8e3dcc27c55 305 PRINTS PR00421 Thioredoxin family signature 85 96 1.9E-6 T 23-04-2016 RD1_RS00180 80e857f79d04a9ba208bd8e3dcc27c55 305 Pfam PF14559 Tetratricopeptide repeat 144 209 1.1E-9 T 23-04-2016 RD1_RS00180 80e857f79d04a9ba208bd8e3dcc27c55 305 PANTHER PTHR10438 20 145 9.3E-35 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RD1_RS00180 80e857f79d04a9ba208bd8e3dcc27c55 305 Pfam PF14561 Tetratricopeptide repeat 215 304 1.1E-28 T 23-04-2016 RD1_RS00180 80e857f79d04a9ba208bd8e3dcc27c55 305 ProSitePatterns PS00194 Thioredoxin family active site. 38 56 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RD1_RS00180 80e857f79d04a9ba208bd8e3dcc27c55 305 Gene3D G3DSA:3.40.30.10 10 121 1.3E-31 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS00180 80e857f79d04a9ba208bd8e3dcc27c55 305 Gene3D G3DSA:1.25.40.10 136 216 7.0E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS00180 80e857f79d04a9ba208bd8e3dcc27c55 305 PANTHER PTHR10438:SF264 20 145 9.3E-35 T 23-04-2016 RD1_RS00180 80e857f79d04a9ba208bd8e3dcc27c55 305 SUPERFAMILY SSF48452 144 189 7.23E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS00180 80e857f79d04a9ba208bd8e3dcc27c55 305 SUPERFAMILY SSF48452 225 266 7.23E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS00180 80e857f79d04a9ba208bd8e3dcc27c55 305 Pfam PF00085 Thioredoxin 17 119 1.6E-26 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 RD1_RS06125 da86a5a33170087695fc603f13a34017 1151 Pfam PF02463 RecF/RecN/SMC N terminal domain 4 1136 1.0E-53 T 23-04-2016 IPR003395 RecF/RecN/SMC, N-terminal RD1_RS06125 da86a5a33170087695fc603f13a34017 1151 PANTHER PTHR18937:SF261 2 1146 1.8E-219 T 23-04-2016 RD1_RS06125 da86a5a33170087695fc603f13a34017 1151 SUPERFAMILY SSF52540 939 1142 3.48E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06125 da86a5a33170087695fc603f13a34017 1151 SUPERFAMILY SSF52540 3 210 3.48E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06125 da86a5a33170087695fc603f13a34017 1151 PANTHER PTHR18937 2 1146 1.8E-219 T 23-04-2016 RD1_RS06125 da86a5a33170087695fc603f13a34017 1151 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1145 20.417 T 23-04-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 RD1_RS06125 da86a5a33170087695fc603f13a34017 1151 Gene3D G3DSA:3.40.50.300 3 166 5.4E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06125 da86a5a33170087695fc603f13a34017 1151 Gene3D G3DSA:3.40.50.300 990 1145 5.4E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03410 02d88e11d856478386c5984e0b9548ba 289 PANTHER PTHR10584 2 287 7.8E-58 T 23-04-2016 RD1_RS03410 02d88e11d856478386c5984e0b9548ba 289 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 233 246 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RD1_RS03410 02d88e11d856478386c5984e0b9548ba 289 PANTHER PTHR10584:SF157 2 287 7.8E-58 T 23-04-2016 RD1_RS03410 02d88e11d856478386c5984e0b9548ba 289 Pfam PF00294 pfkB family carbohydrate kinase 3 277 2.0E-44 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RD1_RS03410 02d88e11d856478386c5984e0b9548ba 289 SUPERFAMILY SSF53613 3 287 3.43E-51 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS03410 02d88e11d856478386c5984e0b9548ba 289 Gene3D G3DSA:3.40.1190.20 2 288 4.7E-59 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS17950 46b5ea9fc6d7f14371ab28a32476354b 339 Gene3D G3DSA:3.40.50.300 128 332 2.4E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17950 46b5ea9fc6d7f14371ab28a32476354b 339 SUPERFAMILY SSF52540 121 304 1.39E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17950 46b5ea9fc6d7f14371ab28a32476354b 339 Pfam PF02562 PhoH-like protein 129 332 9.6E-90 T 23-04-2016 IPR003714 PhoH-like protein GO:0005524 RD1_RS17950 46b5ea9fc6d7f14371ab28a32476354b 339 PANTHER PTHR30473:SF1 19 333 3.2E-147 T 23-04-2016 RD1_RS17950 46b5ea9fc6d7f14371ab28a32476354b 339 PANTHER PTHR30473 19 333 3.2E-147 T 23-04-2016 RD1_RS06860 d23c8206e69bf3b7bfdc8a3690661fc6 334 Pfam PF03459 TOBE domain 267 321 4.8E-9 T 23-04-2016 IPR005116 Transport-associated OB, type 1 RD1_RS06860 d23c8206e69bf3b7bfdc8a3690661fc6 334 SUPERFAMILY SSF50331 236 332 2.66E-20 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS06860 d23c8206e69bf3b7bfdc8a3690661fc6 334 Gene3D G3DSA:2.40.50.140 258 318 3.6E-15 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS06860 d23c8206e69bf3b7bfdc8a3690661fc6 334 Gene3D G3DSA:3.40.50.300 3 234 1.3E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06860 d23c8206e69bf3b7bfdc8a3690661fc6 334 PANTHER PTHR24220:SF319 5 271 7.8E-157 T 23-04-2016 RD1_RS06860 d23c8206e69bf3b7bfdc8a3690661fc6 334 SMART SM00382 28 211 2.0E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS06860 d23c8206e69bf3b7bfdc8a3690661fc6 334 SUPERFAMILY SSF52540 4 242 7.14E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06860 d23c8206e69bf3b7bfdc8a3690661fc6 334 PANTHER PTHR24220 5 271 7.8E-157 T 23-04-2016 RD1_RS06860 d23c8206e69bf3b7bfdc8a3690661fc6 334 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS06860 d23c8206e69bf3b7bfdc8a3690661fc6 334 Pfam PF00005 ABC transporter 22 161 4.2E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS16595 2a86b1ffb3bc90e17fa8d973042e889c 164 PANTHER PTHR35011 1 153 6.0E-19 T 23-04-2016 RD1_RS16595 2a86b1ffb3bc90e17fa8d973042e889c 164 PANTHER PTHR35011:SF2 1 153 6.0E-19 T 23-04-2016 RD1_RS16595 2a86b1ffb3bc90e17fa8d973042e889c 164 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 24 153 7.9E-31 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS11125 86404003a832a9dcf04d7263a0ee9526 262 Pfam PF03437 BtpA family 9 257 4.5E-30 T 23-04-2016 IPR005137 Photosystem I BtpA, assembly RD1_RS11125 86404003a832a9dcf04d7263a0ee9526 262 SUPERFAMILY SSF51391 34 237 2.62E-14 T 23-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS11125 86404003a832a9dcf04d7263a0ee9526 262 Gene3D G3DSA:3.20.20.70 36 238 1.9E-9 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS11125 86404003a832a9dcf04d7263a0ee9526 262 ProDom PD011184 BTPA I PHOTOSYSTEM BIOGENESIS ASSEMBLY SGCQ TRIPHOSPHATASE NUCLEOSIDE PAE3553 ENZYME 34 185 1.0E-10 T 23-04-2016 IPR005137 Photosystem I BtpA, assembly RD1_RS11125 86404003a832a9dcf04d7263a0ee9526 262 PANTHER PTHR21381 1 258 2.2E-27 T 23-04-2016 IPR005137 Photosystem I BtpA, assembly RD1_RS11125 86404003a832a9dcf04d7263a0ee9526 262 PIRSF PIRSF005956 1 262 1.1E-71 T 23-04-2016 IPR005137 Photosystem I BtpA, assembly RD1_RS14785 ea7490598518d8c7ff8339d3a3313dde 258 SUPERFAMILY SSF52096 1 258 3.92E-78 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS14785 ea7490598518d8c7ff8339d3a3313dde 258 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 99 119 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RD1_RS14785 ea7490598518d8c7ff8339d3a3313dde 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 257 2.0E-68 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RD1_RS14785 ea7490598518d8c7ff8339d3a3313dde 258 PANTHER PTHR11941 2 255 9.3E-82 T 23-04-2016 RD1_RS14785 ea7490598518d8c7ff8339d3a3313dde 258 Gene3D G3DSA:3.90.226.10 1 255 5.7E-78 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS14785 ea7490598518d8c7ff8339d3a3313dde 258 PANTHER PTHR11941:SF76 2 255 9.3E-82 T 23-04-2016 RD1_RS00460 b86f4749f0f14dd4c3be1e97c4fb5952 371 Pfam PF02276 Photosynthetic reaction centre cytochrome C subunit 42 363 4.2E-132 T 23-04-2016 IPR003158 Photosynthetic reaction centre, cytochrome c subunit GO:0005506|GO:0009055|GO:0019684|GO:0020037|GO:0030077 RD1_RS00460 b86f4749f0f14dd4c3be1e97c4fb5952 371 PIRSF PIRSF000017 17 371 1.4E-153 T 23-04-2016 IPR003158 Photosynthetic reaction centre, cytochrome c subunit GO:0005506|GO:0009055|GO:0019684|GO:0020037|GO:0030077 RD1_RS00460 b86f4749f0f14dd4c3be1e97c4fb5952 371 SUPERFAMILY SSF48695 41 365 4.35E-110 T 23-04-2016 IPR011031 Multihaem cytochrome RD1_RS00460 b86f4749f0f14dd4c3be1e97c4fb5952 371 Gene3D G3DSA:1.10.468.10 172 347 3.8E-49 T 23-04-2016 IPR023119 Multihaem cytochrome, photosynthetic reaction centre cytochrome subunit-like RD1_RS00460 b86f4749f0f14dd4c3be1e97c4fb5952 371 Gene3D G3DSA:1.10.468.10 31 170 2.1E-38 T 23-04-2016 IPR023119 Multihaem cytochrome, photosynthetic reaction centre cytochrome subunit-like RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 443 517 2.6E-7 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 PANTHER PTHR22573 1 540 7.7E-249 T 23-04-2016 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 270 285 2.4E-21 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 205 224 2.4E-21 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 241 254 2.4E-21 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 106 120 2.4E-21 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 SUPERFAMILY SSF53738 183 290 1.92E-28 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 SUPERFAMILY SSF53738 3 211 6.67E-44 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 Gene3D G3DSA:3.40.120.10 283 400 2.0E-44 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 SUPERFAMILY SSF53738 278 414 7.06E-36 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 Gene3D G3DSA:3.40.120.10 195 282 2.4E-36 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 294 407 6.4E-31 T 23-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 PANTHER PTHR22573:SF2 1 540 7.7E-249 T 23-04-2016 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 Gene3D G3DSA:3.40.120.10 3 194 3.4E-58 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 SUPERFAMILY SSF55957 409 543 6.28E-42 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 Gene3D G3DSA:3.30.310.50 401 543 1.2E-55 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 184 286 1.7E-14 T 23-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 14 153 2.6E-30 T 23-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS13215 5cfb9676da5702b4321de3b03ff45f05 543 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 107 116 - T 23-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS04875 2b63353a0bd1f1c5a5660eaadfaf5ae6 341 Gene3D G3DSA:3.40.190.10 1 126 1.8E-37 T 23-04-2016 RD1_RS04875 2b63353a0bd1f1c5a5660eaadfaf5ae6 341 Gene3D G3DSA:3.40.190.10 267 320 1.8E-37 T 23-04-2016 RD1_RS04875 2b63353a0bd1f1c5a5660eaadfaf5ae6 341 Pfam PF13343 Bacterial extracellular solute-binding protein 73 316 2.2E-33 T 23-04-2016 RD1_RS04875 2b63353a0bd1f1c5a5660eaadfaf5ae6 341 Gene3D G3DSA:3.40.190.10 128 266 1.9E-46 T 23-04-2016 RD1_RS04875 2b63353a0bd1f1c5a5660eaadfaf5ae6 341 SUPERFAMILY SSF53850 22 334 4.6E-75 T 23-04-2016 RD1_RS04875 2b63353a0bd1f1c5a5660eaadfaf5ae6 341 PANTHER PTHR30006 26 336 8.7E-75 T 23-04-2016 RD1_RS04875 2b63353a0bd1f1c5a5660eaadfaf5ae6 341 PANTHER PTHR30006:SF2 26 336 8.7E-75 T 23-04-2016 RD1_RS04875 2b63353a0bd1f1c5a5660eaadfaf5ae6 341 PIRSF PIRSF002825 2 337 4.4E-68 T 23-04-2016 IPR026045 Ferric binding protein RD1_RS18245 e7f44742a6e8db72fa064f0bc172dc82 69 PANTHER PTHR34977 1 61 1.3E-13 T 23-04-2016 RD1_RS18245 e7f44742a6e8db72fa064f0bc172dc82 69 PIRSF PIRSF039008 1 66 1.4E-32 T 23-04-2016 IPR026042 Stress response protein YjbJ RD1_RS18245 e7f44742a6e8db72fa064f0bc172dc82 69 SUPERFAMILY SSF69047 1 66 7.72E-23 T 23-04-2016 IPR008462 CsbD-like RD1_RS18245 e7f44742a6e8db72fa064f0bc172dc82 69 Gene3D G3DSA:1.10.1470.10 1 67 1.0E-25 T 23-04-2016 IPR008462 CsbD-like RD1_RS18245 e7f44742a6e8db72fa064f0bc172dc82 69 Pfam PF05532 CsbD-like 4 55 6.2E-18 T 23-04-2016 IPR008462 CsbD-like RD1_RS17205 f26c6442cf50126c1f396d9a4c1a3faf 334 Pfam PF00248 Aldo/keto reductase family 19 311 4.2E-66 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS17205 f26c6442cf50126c1f396d9a4c1a3faf 334 SUPERFAMILY SSF51430 7 312 8.25E-90 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS17205 f26c6442cf50126c1f396d9a4c1a3faf 334 PANTHER PTHR11732 5 322 4.5E-117 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RD1_RS17205 f26c6442cf50126c1f396d9a4c1a3faf 334 PRINTS PR00069 Aldo-keto reductase signature 46 70 7.46E-5 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RD1_RS17205 f26c6442cf50126c1f396d9a4c1a3faf 334 PRINTS PR00069 Aldo-keto reductase signature 177 206 7.46E-5 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RD1_RS17205 f26c6442cf50126c1f396d9a4c1a3faf 334 PRINTS PR00069 Aldo-keto reductase signature 143 160 7.46E-5 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RD1_RS17205 f26c6442cf50126c1f396d9a4c1a3faf 334 PRINTS PR00069 Aldo-keto reductase signature 112 130 7.46E-5 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RD1_RS17205 f26c6442cf50126c1f396d9a4c1a3faf 334 Gene3D G3DSA:3.20.20.100 6 322 6.9E-98 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS06115 bbdb6074fcaa23533b8724078a286691 188 Hamap MF_01398 ATP synthase subunit b [atpF]. 15 183 11.483 T 23-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RD1_RS06115 bbdb6074fcaa23533b8724078a286691 188 Pfam PF00430 ATP synthase B/B' CF(0) 34 163 5.4E-24 T 23-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RD1_RS07715 0e1a911d79c1c9c2a8b5c2ec243a40e4 508 Gene3D G3DSA:2.60.40.10 413 507 8.3E-19 T 23-04-2016 IPR013783 Immunoglobulin-like fold RD1_RS07715 0e1a911d79c1c9c2a8b5c2ec243a40e4 508 SUPERFAMILY SSF74650 36 404 4.08E-148 T 23-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 RD1_RS07715 0e1a911d79c1c9c2a8b5c2ec243a40e4 508 PANTHER PTHR30504 13 508 5.0E-181 T 23-04-2016 RD1_RS07715 0e1a911d79c1c9c2a8b5c2ec243a40e4 508 PANTHER PTHR30504:SF2 13 508 5.0E-181 T 23-04-2016 RD1_RS07715 0e1a911d79c1c9c2a8b5c2ec243a40e4 508 Gene3D G3DSA:2.70.98.10 35 404 5.9E-155 T 23-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 RD1_RS07715 0e1a911d79c1c9c2a8b5c2ec243a40e4 508 SUPERFAMILY SSF81296 412 506 8.68E-20 T 23-04-2016 IPR014756 Immunoglobulin E-set RD1_RS07715 0e1a911d79c1c9c2a8b5c2ec243a40e4 508 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 36 505 4.9E-179 T 23-04-2016 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 UniPathway: UPA00637 RD1_RS07715 0e1a911d79c1c9c2a8b5c2ec243a40e4 508 PIRSF PIRSF006281 1 508 4.9E-170 T 23-04-2016 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D UniPathway: UPA00637 RD1_RS07710 df69918ce893633776d27f1399b063d2 630 SUPERFAMILY SSF53448 118 413 5.4E-22 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS07710 df69918ce893633776d27f1399b063d2 630 Gene3D G3DSA:3.90.550.10 217 378 4.5E-4 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS07710 df69918ce893633776d27f1399b063d2 630 Pfam PF13632 Glycosyl transferase family group 2 223 413 3.1E-15 T 23-04-2016 IPR001173 Glycosyltransferase 2-like RD1_RS07710 df69918ce893633776d27f1399b063d2 630 PANTHER PTHR10587 46 298 8.0E-58 T 23-04-2016 RD1_RS07710 df69918ce893633776d27f1399b063d2 630 PANTHER PTHR10587 348 608 8.0E-58 T 23-04-2016 RD1_RS07710 df69918ce893633776d27f1399b063d2 630 PANTHER PTHR10587:SF63 46 298 8.0E-58 T 23-04-2016 RD1_RS07710 df69918ce893633776d27f1399b063d2 630 PANTHER PTHR10587:SF63 348 608 8.0E-58 T 23-04-2016 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 Gene3D G3DSA:1.10.150.20 530 615 1.3E-21 T 23-04-2016 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 Gene3D G3DSA:2.40.50.140 329 410 4.7E-33 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 SUPERFAMILY SSF52113 629 703 4.11E-17 T 23-04-2016 IPR001357 BRCT domain RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 SUPERFAMILY SSF50249 327 421 7.02E-23 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 Gene3D G3DSA:1.10.287.610 7 77 1.3E-21 T 23-04-2016 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 Gene3D G3DSA:3.30.470.30 131 261 2.6E-52 T 23-04-2016 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 Gene3D G3DSA:3.40.50.10190 628 703 6.2E-23 T 23-04-2016 IPR001357 BRCT domain RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 PANTHER PTHR23389:SF9 11 558 8.0E-171 T 23-04-2016 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 21 698 9.2E-226 T 23-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 629 702 4.1E-10 T 23-04-2016 IPR001357 BRCT domain RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 PIRSF PIRSF001604 6 705 1.2E-224 T 23-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 Gene3D G3DSA:1.10.150.20 455 528 1.7E-25 T 23-04-2016 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 PANTHER PTHR23389 11 558 8.0E-171 T 23-04-2016 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 SMART SM00532 13 468 9.7E-240 T 23-04-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 127 156 - T 23-04-2016 IPR018239 NAD-dependent DNA ligase, active site RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 Pfam PF12826 Helix-hairpin-helix motif 536 606 2.0E-11 T 23-04-2016 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 13 327 5.1E-118 T 23-04-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 340 355 - T 23-04-2016 IPR033136 NAD-dependent DNA ligase, conserved site RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 SUPERFAMILY SSF47781 423 614 5.34E-46 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 331 418 8.4E-31 T 23-04-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 427 454 1.8E-10 T 23-04-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 SUPERFAMILY SSF56091 10 325 2.26E-115 T 23-04-2016 RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 SMART SM00292 628 705 1.6E-9 T 23-04-2016 IPR001357 BRCT domain RD1_RS11980 54ed6f656e81d698a2488735fe1d5513 705 Hamap MF_01588 DNA ligase [ligA]. 12 702 49.807 T 23-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RD1_RS06475 e39c496690a02b9ef0c0b01a34f6cfb8 286 Gene3D G3DSA:2.40.30.10 5 34 6.9E-10 T 23-04-2016 RD1_RS06475 e39c496690a02b9ef0c0b01a34f6cfb8 286 Gene3D G3DSA:2.40.30.10 160 211 6.9E-10 T 23-04-2016 RD1_RS06475 e39c496690a02b9ef0c0b01a34f6cfb8 286 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 5 206 7.6E-85 T 23-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06475 e39c496690a02b9ef0c0b01a34f6cfb8 286 PANTHER PTHR11229 2 259 1.7E-116 T 23-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06475 e39c496690a02b9ef0c0b01a34f6cfb8 286 Gene3D G3DSA:4.10.960.10 78 159 2.8E-29 T 23-04-2016 RD1_RS06475 e39c496690a02b9ef0c0b01a34f6cfb8 286 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 3 209 36.419 T 23-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06475 e39c496690a02b9ef0c0b01a34f6cfb8 286 Pfam PF00297 Ribosomal protein L3 98 183 7.0E-11 T 23-04-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06475 e39c496690a02b9ef0c0b01a34f6cfb8 286 SUPERFAMILY SSF50447 3 217 3.09E-83 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 SUPERFAMILY SSF50447 267 398 6.36E-27 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 Gene3D G3DSA:2.40.30.10 297 399 2.6E-22 T 23-04-2016 RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 21 156 4.3E-21 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 14 532 4.0E-196 T 23-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 SUPERFAMILY SSF52540 14 282 1.64E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 63 78 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 SUPERFAMILY SSF54980 398 469 2.7E-11 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 Pfam PF00009 Elongation factor Tu GTP binding domain 18 282 8.9E-48 T 23-04-2016 RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 Gene3D G3DSA:3.40.50.300 15 285 8.5E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 Gene3D G3DSA:3.30.70.870 408 470 3.3E-9 T 23-04-2016 RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 9 531 48.905 T 23-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 PANTHER PTHR23115:SF69 256 469 4.2E-204 T 23-04-2016 RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 PANTHER PTHR23115:SF69 1 189 4.2E-204 T 23-04-2016 RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 Pfam PF03144 Elongation factor Tu domain 2 319 385 8.2E-9 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 Pfam PF16658 Class II release factor RF3, C-terminal domain 393 518 1.8E-39 T 23-04-2016 IPR032090 Peptide chain release factor 3, C-terminal RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 PRINTS PR00315 GTP-binding elongation factor signature 70 78 6.2E-12 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 PRINTS PR00315 GTP-binding elongation factor signature 90 100 6.2E-12 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 PRINTS PR00315 GTP-binding elongation factor signature 20 33 6.2E-12 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 PRINTS PR00315 GTP-binding elongation factor signature 142 151 6.2E-12 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 PRINTS PR00315 GTP-binding elongation factor signature 106 117 6.2E-12 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 PANTHER PTHR23115 256 469 4.2E-204 T 23-04-2016 RD1_RS14980 ec5493cccd39ec75f9fd5d504eb443fe 535 PANTHER PTHR23115 1 189 4.2E-204 T 23-04-2016 RD1_RS06850 a2e968304dce62c12d055b708d28b497 82 Pfam PF11154 Protein of unknown function (DUF2934) 7 40 6.7E-13 T 23-04-2016 IPR021327 Protein of unknown function DUF2934 RD1_RS15350 04ffd082e4b6ae8b7e37d82b1bdaf4fe 596 PANTHER PTHR10804 285 594 1.6E-179 T 23-04-2016 RD1_RS15350 04ffd082e4b6ae8b7e37d82b1bdaf4fe 596 PANTHER PTHR10804 1 188 1.6E-179 T 23-04-2016 RD1_RS15350 04ffd082e4b6ae8b7e37d82b1bdaf4fe 596 Pfam PF16189 Creatinase/Prolidase N-terminal domain 156 309 1.3E-33 T 23-04-2016 RD1_RS15350 04ffd082e4b6ae8b7e37d82b1bdaf4fe 596 SUPERFAMILY SSF53092 17 153 1.24E-11 T 23-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal RD1_RS15350 04ffd082e4b6ae8b7e37d82b1bdaf4fe 596 Pfam PF16188 C-terminal region of peptidase_M24 536 596 5.6E-22 T 23-04-2016 IPR032416 Peptidase M24, C-terminal domain RD1_RS15350 04ffd082e4b6ae8b7e37d82b1bdaf4fe 596 SUPERFAMILY SSF55920 306 562 4.71E-52 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS15350 04ffd082e4b6ae8b7e37d82b1bdaf4fe 596 PANTHER PTHR10804:SF105 285 594 1.6E-179 T 23-04-2016 RD1_RS15350 04ffd082e4b6ae8b7e37d82b1bdaf4fe 596 PANTHER PTHR10804:SF105 1 188 1.6E-179 T 23-04-2016 RD1_RS15350 04ffd082e4b6ae8b7e37d82b1bdaf4fe 596 Gene3D G3DSA:3.40.350.10 17 149 1.9E-16 T 23-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RD1_RS15350 04ffd082e4b6ae8b7e37d82b1bdaf4fe 596 Gene3D G3DSA:3.90.230.10 303 563 4.4E-55 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS15350 04ffd082e4b6ae8b7e37d82b1bdaf4fe 596 Pfam PF00557 Metallopeptidase family M24 315 522 8.4E-41 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS15350 04ffd082e4b6ae8b7e37d82b1bdaf4fe 596 Pfam PF01321 Creatinase/Prolidase N-terminal domain 17 151 1.2E-19 T 23-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 RD1_RS16820 7d353495dac752755d871c06354b03f1 904 Pfam PF02310 B12 binding domain 416 506 3.8E-18 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS16820 7d353495dac752755d871c06354b03f1 904 SUPERFAMILY SSF51717 21 295 1.44E-92 T 23-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 RD1_RS16820 7d353495dac752755d871c06354b03f1 904 SUPERFAMILY SSF52242 410 563 1.14E-42 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS16820 7d353495dac752755d871c06354b03f1 904 SMART SM01018 320 403 2.8E-45 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RD1_RS16820 7d353495dac752755d871c06354b03f1 904 SUPERFAMILY SSF47644 315 402 2.62E-28 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RD1_RS16820 7d353495dac752755d871c06354b03f1 904 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 607 877 1.1E-114 T 23-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 RD1_RS16820 7d353495dac752755d871c06354b03f1 904 SUPERFAMILY SSF56507 570 895 5.49E-127 T 23-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 RD1_RS16820 7d353495dac752755d871c06354b03f1 904 Pfam PF00809 Pterin binding enzyme 25 263 1.7E-62 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 RD1_RS16820 7d353495dac752755d871c06354b03f1 904 Gene3D G3DSA:1.10.1240.10 314 400 3.8E-38 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RD1_RS16820 7d353495dac752755d871c06354b03f1 904 TIGRFAM TIGR02082 metH: methionine synthase 4 861 0.0 T 23-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 RD1_RS16820 7d353495dac752755d871c06354b03f1 904 Gene3D G3DSA:3.40.50.280 414 563 5.4E-60 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS16820 7d353495dac752755d871c06354b03f1 904 Gene3D G3DSA:3.20.20.20 21 301 2.1E-118 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 RD1_RS16820 7d353495dac752755d871c06354b03f1 904 Gene3D G3DSA:3.10.196.10 627 896 5.8E-105 T 23-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 RD1_RS16820 7d353495dac752755d871c06354b03f1 904 PIRSF PIRSF000381 1 864 0.0 T 23-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 RD1_RS16820 7d353495dac752755d871c06354b03f1 904 Pfam PF02607 B12 binding domain 323 395 2.0E-24 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RD1_RS10895 c793478a8777b8a35d79cd3d7df4273a 370 Gene3D G3DSA:3.40.190.10 282 304 4.5E-17 T 23-04-2016 RD1_RS10895 c793478a8777b8a35d79cd3d7df4273a 370 Gene3D G3DSA:3.40.190.10 31 138 4.5E-17 T 23-04-2016 RD1_RS10895 c793478a8777b8a35d79cd3d7df4273a 370 Gene3D G3DSA:3.40.190.10 139 281 3.6E-28 T 23-04-2016 RD1_RS10895 c793478a8777b8a35d79cd3d7df4273a 370 PANTHER PTHR30222:SF5 28 291 6.0E-24 T 23-04-2016 RD1_RS10895 c793478a8777b8a35d79cd3d7df4273a 370 SUPERFAMILY SSF53850 32 368 8.98E-50 T 23-04-2016 RD1_RS10895 c793478a8777b8a35d79cd3d7df4273a 370 Pfam PF13416 Bacterial extracellular solute-binding protein 46 305 2.3E-26 T 23-04-2016 RD1_RS10895 c793478a8777b8a35d79cd3d7df4273a 370 PANTHER PTHR30222 28 291 6.0E-24 T 23-04-2016 RD1_RS10895 c793478a8777b8a35d79cd3d7df4273a 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 258 277 2.7E-6 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS10895 c793478a8777b8a35d79cd3d7df4273a 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 129 145 2.7E-6 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS10895 c793478a8777b8a35d79cd3d7df4273a 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 80 94 2.7E-6 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS10895 c793478a8777b8a35d79cd3d7df4273a 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 155 169 2.7E-6 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS00065 9a3148b19165fcadc6b750f76a533fe9 344 PANTHER PTHR24220:SF374 48 280 2.9E-124 T 23-04-2016 RD1_RS00065 9a3148b19165fcadc6b750f76a533fe9 344 PANTHER PTHR24220:SF374 14 24 2.9E-124 T 23-04-2016 RD1_RS00065 9a3148b19165fcadc6b750f76a533fe9 344 Gene3D G3DSA:3.40.50.300 37 273 4.4E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00065 9a3148b19165fcadc6b750f76a533fe9 344 ProSitePatterns PS00211 ABC transporters family signature. 172 186 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS00065 9a3148b19165fcadc6b750f76a533fe9 344 PANTHER PTHR24220 48 280 2.9E-124 T 23-04-2016 RD1_RS00065 9a3148b19165fcadc6b750f76a533fe9 344 PANTHER PTHR24220 14 24 2.9E-124 T 23-04-2016 RD1_RS00065 9a3148b19165fcadc6b750f76a533fe9 344 SMART SM00382 60 249 1.1E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS00065 9a3148b19165fcadc6b750f76a533fe9 344 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 45 323 1.6E-100 T 23-04-2016 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 RD1_RS00065 9a3148b19165fcadc6b750f76a533fe9 344 SUPERFAMILY SSF52540 15 271 2.06E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00065 9a3148b19165fcadc6b750f76a533fe9 344 Pfam PF00005 ABC transporter 52 199 5.7E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS18515 4d86db8935c49aa5c77183e7c5bcabd7 322 SUPERFAMILY SSF52540 48 260 5.02E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18515 4d86db8935c49aa5c77183e7c5bcabd7 322 Gene3D G3DSA:3.40.50.300 54 201 5.8E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18515 4d86db8935c49aa5c77183e7c5bcabd7 322 Pfam PF05621 Bacterial TniB protein 52 266 7.1E-20 T 23-04-2016 IPR008868 Bacterial TniB RD1_RS17535 654c52177cf932e3908453fc4268fa6b 351 PANTHER PTHR13748:SF10 1 328 3.3E-127 T 23-04-2016 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 UniPathway: UPA00148 RD1_RS17535 654c52177cf932e3908453fc4268fa6b 351 SUPERFAMILY SSF90002 253 333 8.5E-17 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RD1_RS17535 654c52177cf932e3908453fc4268fa6b 351 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 8 207 1.6E-54 T 23-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RD1_RS17535 654c52177cf932e3908453fc4268fa6b 351 PANTHER PTHR13748 1 328 3.3E-127 T 23-04-2016 RD1_RS17535 654c52177cf932e3908453fc4268fa6b 351 SMART SM00833 253 343 1.2E-4 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RD1_RS17535 654c52177cf932e3908453fc4268fa6b 351 TIGRFAM TIGR02475 CobW: cobalamin biosynthesis protein CobW 5 341 1.3E-161 T 23-04-2016 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 UniPathway: UPA00148 RD1_RS17535 654c52177cf932e3908453fc4268fa6b 351 Gene3D G3DSA:3.30.1220.10 232 331 4.1E-24 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RD1_RS17535 654c52177cf932e3908453fc4268fa6b 351 Gene3D G3DSA:3.40.50.300 6 229 2.0E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17535 654c52177cf932e3908453fc4268fa6b 351 SUPERFAMILY SSF52540 6 249 6.68E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17535 654c52177cf932e3908453fc4268fa6b 351 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 253 342 9.8E-15 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RD1_RS01335 0ac8f3d7dc81f4da029d726e47052d5e 202 PANTHER PTHR11941 1 194 1.1E-38 T 23-04-2016 RD1_RS01335 0ac8f3d7dc81f4da029d726e47052d5e 202 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 88 108 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RD1_RS01335 0ac8f3d7dc81f4da029d726e47052d5e 202 SUPERFAMILY SSF52096 2 199 4.68E-49 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS01335 0ac8f3d7dc81f4da029d726e47052d5e 202 PANTHER PTHR11941:SF76 1 194 1.1E-38 T 23-04-2016 RD1_RS01335 0ac8f3d7dc81f4da029d726e47052d5e 202 Gene3D G3DSA:3.90.226.10 2 198 5.2E-47 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS01335 0ac8f3d7dc81f4da029d726e47052d5e 202 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 195 9.5E-36 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RD1_RS07410 71ddf2f9cb7f08cc5a2f1bac063b1f0c 127 Gene3D G3DSA:1.20.120.550 8 124 1.2E-12 T 23-04-2016 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain RD1_RS07410 71ddf2f9cb7f08cc5a2f1bac063b1f0c 127 SUPERFAMILY SSF161084 5 124 9.42E-20 T 23-04-2016 RD1_RS07410 71ddf2f9cb7f08cc5a2f1bac063b1f0c 127 Pfam PF01124 MAPEG family 7 127 1.9E-13 T 23-04-2016 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein RD1_RS18970 3c96153c225d67f38a346ef5e5e31b34 309 Gene3D G3DSA:3.40.190.10 173 260 1.5E-16 T 23-04-2016 RD1_RS18970 3c96153c225d67f38a346ef5e5e31b34 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 5.2E-17 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS18970 3c96153c225d67f38a346ef5e5e31b34 309 PANTHER PTHR30537:SF5 1 296 1.2E-99 T 23-04-2016 RD1_RS18970 3c96153c225d67f38a346ef5e5e31b34 309 Pfam PF03466 LysR substrate binding domain 89 294 2.8E-38 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS18970 3c96153c225d67f38a346ef5e5e31b34 309 PANTHER PTHR30537 1 296 1.2E-99 T 23-04-2016 RD1_RS18970 3c96153c225d67f38a346ef5e5e31b34 309 Gene3D G3DSA:3.40.190.10 92 172 2.8E-18 T 23-04-2016 RD1_RS18970 3c96153c225d67f38a346ef5e5e31b34 309 SUPERFAMILY SSF53850 87 298 1.19E-40 T 23-04-2016 RD1_RS18970 3c96153c225d67f38a346ef5e5e31b34 309 Gene3D G3DSA:1.10.10.10 4 83 3.1E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18970 3c96153c225d67f38a346ef5e5e31b34 309 SUPERFAMILY SSF46785 4 87 1.31E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS06985 02e1a64daf140b4ecea05fe695e4c1eb 246 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 11 224 1.2E-62 T 23-04-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 RD1_RS06985 02e1a64daf140b4ecea05fe695e4c1eb 246 PANTHER PTHR31272:SF4 1 237 5.1E-71 T 23-04-2016 RD1_RS06985 02e1a64daf140b4ecea05fe695e4c1eb 246 PANTHER PTHR31272 1 237 5.1E-71 T 23-04-2016 RD1_RS16890 90d911a766bc0d1726f0d92733984724 998 SUPERFAMILY SSF56112 4 311 1.17E-48 T 23-04-2016 IPR011009 Protein kinase-like domain RD1_RS16890 90d911a766bc0d1726f0d92733984724 998 Pfam PF00202 Aminotransferase class-III 598 994 5.5E-70 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS16890 90d911a766bc0d1726f0d92733984724 998 SUPERFAMILY SSF51261 390 525 1.67E-13 T 23-04-2016 IPR011055 Duplicated hybrid motif RD1_RS16890 90d911a766bc0d1726f0d92733984724 998 Gene3D G3DSA:3.90.1150.10 881 997 2.8E-31 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS16890 90d911a766bc0d1726f0d92733984724 998 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 809 847 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS16890 90d911a766bc0d1726f0d92733984724 998 Gene3D G3DSA:2.70.70.10 374 527 1.1E-14 T 23-04-2016 RD1_RS16890 90d911a766bc0d1726f0d92733984724 998 PANTHER PTHR11986 500 997 5.8E-177 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS16890 90d911a766bc0d1726f0d92733984724 998 SUPERFAMILY SSF53383 590 996 2.01E-97 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS16890 90d911a766bc0d1726f0d92733984724 998 Pfam PF01551 Peptidase family M23 428 527 7.2E-12 T 23-04-2016 IPR016047 Peptidase M23 RD1_RS16890 90d911a766bc0d1726f0d92733984724 998 PANTHER PTHR11986:SF23 500 997 5.8E-177 T 23-04-2016 RD1_RS16890 90d911a766bc0d1726f0d92733984724 998 Pfam PF01636 Phosphotransferase enzyme family 21 261 1.3E-19 T 23-04-2016 IPR002575 Aminoglycoside phosphotransferase RD1_RS16890 90d911a766bc0d1726f0d92733984724 998 Gene3D G3DSA:3.90.1200.10 112 301 1.1E-24 T 23-04-2016 RD1_RS16890 90d911a766bc0d1726f0d92733984724 998 Gene3D G3DSA:3.40.640.10 628 880 1.9E-65 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS01525 e7dfcd4f881c302158f63219e260871d 352 SUPERFAMILY SSF52540 47 178 2.53E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01525 e7dfcd4f881c302158f63219e260871d 352 PANTHER PTHR12169 1 350 6.7E-139 T 23-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 RD1_RS01525 e7dfcd4f881c302158f63219e260871d 352 Pfam PF03969 AFG1-like ATPase 3 350 6.4E-110 T 23-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 RD1_RS01525 e7dfcd4f881c302158f63219e260871d 352 Gene3D G3DSA:3.40.50.300 31 186 4.9E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09670 0eeed8ccc3bd275dd10d812fdf743395 218 SUPERFAMILY SSF47781 65 134 1.02E-17 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RD1_RS09670 0eeed8ccc3bd275dd10d812fdf743395 218 Pfam PF01330 RuvA N terminal domain 1 62 2.9E-18 T 23-04-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 RD1_RS09670 0eeed8ccc3bd275dd10d812fdf743395 218 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 215 27.121 T 23-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RD1_RS09670 0eeed8ccc3bd275dd10d812fdf743395 218 Pfam PF07499 RuvA, C-terminal domain 169 214 8.7E-12 T 23-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RD1_RS09670 0eeed8ccc3bd275dd10d812fdf743395 218 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 214 4.6E-36 T 23-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RD1_RS09670 0eeed8ccc3bd275dd10d812fdf743395 218 SUPERFAMILY SSF46929 167 214 3.92E-10 T 23-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RD1_RS09670 0eeed8ccc3bd275dd10d812fdf743395 218 Gene3D G3DSA:1.10.150.20 68 142 2.2E-23 T 23-04-2016 RD1_RS09670 0eeed8ccc3bd275dd10d812fdf743395 218 Gene3D G3DSA:1.10.8.10 167 215 6.5E-14 T 23-04-2016 RD1_RS09670 0eeed8ccc3bd275dd10d812fdf743395 218 PANTHER PTHR33796 2 217 2.5E-56 T 23-04-2016 RD1_RS09670 0eeed8ccc3bd275dd10d812fdf743395 218 SUPERFAMILY SSF50249 1 63 5.25E-16 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS09670 0eeed8ccc3bd275dd10d812fdf743395 218 Gene3D G3DSA:2.40.50.140 1 65 6.4E-23 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS09670 0eeed8ccc3bd275dd10d812fdf743395 218 Pfam PF14520 Helix-hairpin-helix domain 73 130 1.7E-10 T 23-04-2016 RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 Gene3D G3DSA:3.30.1490.20 119 187 6.6E-30 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 420 41.078 T 23-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 SUPERFAMILY SSF52440 1 100 2.45E-32 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 Gene3D G3DSA:3.40.50.20 2 92 9.3E-35 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 327 418 2.9E-28 T 23-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 SMART SM01209 101 292 6.2E-127 T 23-04-2016 RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 286 293 - T 23-04-2016 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 SUPERFAMILY SSF51246 325 420 9.42E-30 T 23-04-2016 IPR011054 Rudiment single hybrid motif RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 PANTHER PTHR10520 1 421 5.1E-244 T 23-04-2016 RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 SMART SM01210 326 420 1.1E-52 T 23-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 100 6.2E-32 T 23-04-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 292 3.3E-76 T 23-04-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 Gene3D G3DSA:3.30.470.20 188 324 1.1E-57 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 420 1.6E-160 T 23-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 SUPERFAMILY SSF56059 102 322 3.01E-61 T 23-04-2016 RD1_RS08920 497b0127318f0aa738ded6f2de0132da 421 Gene3D G3DSA:3.90.600.10 327 419 3.2E-34 T 23-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS05085 f92dd7e7eafd85ae3d4518ad7f000926 343 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 RD1_RS05085 f92dd7e7eafd85ae3d4518ad7f000926 343 SUPERFAMILY SSF50129 1 177 4.09E-46 T 23-04-2016 IPR011032 GroES-like RD1_RS05085 f92dd7e7eafd85ae3d4518ad7f000926 343 SMART SM00829 7 340 0.002 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RD1_RS05085 f92dd7e7eafd85ae3d4518ad7f000926 343 Gene3D G3DSA:3.40.50.720 170 289 5.5E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05085 f92dd7e7eafd85ae3d4518ad7f000926 343 Pfam PF00107 Zinc-binding dehydrogenase 178 296 1.8E-18 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RD1_RS05085 f92dd7e7eafd85ae3d4518ad7f000926 343 Gene3D G3DSA:3.90.180.10 1 169 3.8E-46 T 23-04-2016 IPR011032 GroES-like RD1_RS05085 f92dd7e7eafd85ae3d4518ad7f000926 343 PANTHER PTHR11695 12 342 1.1E-89 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS05085 f92dd7e7eafd85ae3d4518ad7f000926 343 SUPERFAMILY SSF51735 146 296 9.92E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05085 f92dd7e7eafd85ae3d4518ad7f000926 343 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 136 3.4E-28 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RD1_RS05085 f92dd7e7eafd85ae3d4518ad7f000926 343 PANTHER PTHR11695:SF501 12 342 1.1E-89 T 23-04-2016 RD1_RS14415 9f32b73d5fbf73ef3ece764a5abf1070 149 Pfam PF00583 Acetyltransferase (GNAT) family 61 137 6.0E-10 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS14415 9f32b73d5fbf73ef3ece764a5abf1070 149 SUPERFAMILY SSF55729 5 143 9.57E-18 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS14415 9f32b73d5fbf73ef3ece764a5abf1070 149 Gene3D G3DSA:3.40.630.30 7 135 2.9E-24 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS11255 63c807b95d098da013a6c246d44c3e50 420 Pfam PF03453 MoeA N-terminal region (domain I and II) 17 179 2.4E-33 T 23-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS11255 63c807b95d098da013a6c246d44c3e50 420 SMART SM00852 192 331 4.1E-32 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS11255 63c807b95d098da013a6c246d44c3e50 420 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 266 300 - T 23-04-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 UniPathway: UPA00344 RD1_RS11255 63c807b95d098da013a6c246d44c3e50 420 SUPERFAMILY SSF63867 340 417 2.09E-11 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS11255 63c807b95d098da013a6c246d44c3e50 420 SUPERFAMILY SSF53218 189 336 4.71E-36 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS11255 63c807b95d098da013a6c246d44c3e50 420 Gene3D G3DSA:2.40.340.10 345 417 9.7E-6 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS11255 63c807b95d098da013a6c246d44c3e50 420 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 189 324 1.7E-25 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS11255 63c807b95d098da013a6c246d44c3e50 420 Pfam PF03454 MoeA C-terminal region (domain IV) 347 417 3.4E-5 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS11255 63c807b95d098da013a6c246d44c3e50 420 Gene3D G3DSA:3.40.980.10 175 344 2.4E-52 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS11255 63c807b95d098da013a6c246d44c3e50 420 Gene3D G3DSA:2.170.190.11 60 143 4.1E-26 T 23-04-2016 RD1_RS11255 63c807b95d098da013a6c246d44c3e50 420 PANTHER PTHR10192 17 417 3.5E-112 T 23-04-2016 RD1_RS11255 63c807b95d098da013a6c246d44c3e50 420 Gene3D G3DSA:3.90.105.10 144 174 4.7E-14 T 23-04-2016 RD1_RS11255 63c807b95d098da013a6c246d44c3e50 420 Pfam PF00994 Probable molybdopterin binding domain 193 326 1.7E-23 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS11255 63c807b95d098da013a6c246d44c3e50 420 SUPERFAMILY SSF63882 16 187 7.06E-49 T 23-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS06600 b9f560b42b3f63107c367d0cfbc18bdf 119 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 8 119 1.1E-38 T 23-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06600 b9f560b42b3f63107c367d0cfbc18bdf 119 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 4 119 26.009 T 23-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06600 b9f560b42b3f63107c367d0cfbc18bdf 119 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 5 119 4.7E-40 T 23-04-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06600 b9f560b42b3f63107c367d0cfbc18bdf 119 PANTHER PTHR12899 10 119 3.7E-35 T 23-04-2016 RD1_RS06600 b9f560b42b3f63107c367d0cfbc18bdf 119 Gene3D G3DSA:3.30.420.100 26 119 1.6E-35 T 23-04-2016 RD1_RS06600 b9f560b42b3f63107c367d0cfbc18bdf 119 SUPERFAMILY SSF53137 5 117 1.5E-46 T 23-04-2016 RD1_RS16810 a27b9dabe81c72e07ad5dd801402c8b7 375 Pfam PF00425 chorismate binding enzyme 115 370 4.0E-86 T 23-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal RD1_RS16810 a27b9dabe81c72e07ad5dd801402c8b7 375 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 55 372 8.1E-115 T 23-04-2016 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543|UniPathway: UPA00077 RD1_RS16810 a27b9dabe81c72e07ad5dd801402c8b7 375 SUPERFAMILY SSF56322 23 372 6.67E-109 T 23-04-2016 IPR005801 ADC synthase GO:0009058 RD1_RS16810 a27b9dabe81c72e07ad5dd801402c8b7 375 PRINTS PR00095 Anthranilate synthase component I signature 326 340 2.5E-12 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RD1_RS16810 a27b9dabe81c72e07ad5dd801402c8b7 375 PRINTS PR00095 Anthranilate synthase component I signature 231 244 2.5E-12 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RD1_RS16810 a27b9dabe81c72e07ad5dd801402c8b7 375 PRINTS PR00095 Anthranilate synthase component I signature 217 230 2.5E-12 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RD1_RS16810 a27b9dabe81c72e07ad5dd801402c8b7 375 PRINTS PR00095 Anthranilate synthase component I signature 311 325 2.5E-12 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RD1_RS16810 a27b9dabe81c72e07ad5dd801402c8b7 375 PANTHER PTHR11236 114 372 3.3E-119 T 23-04-2016 RD1_RS16810 a27b9dabe81c72e07ad5dd801402c8b7 375 PANTHER PTHR11236:SF18 114 372 3.3E-119 T 23-04-2016 RD1_RS16810 a27b9dabe81c72e07ad5dd801402c8b7 375 Gene3D G3DSA:3.60.120.10 31 372 2.6E-114 T 23-04-2016 IPR005801 ADC synthase GO:0009058 RD1_RS08845 c738b2f29caf747e6d9e4ea2e0ed75b0 431 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 431 208.503 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RD1_RS08845 c738b2f29caf747e6d9e4ea2e0ed75b0 431 SUPERFAMILY SSF52540 1 425 1.17E-166 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08845 c738b2f29caf747e6d9e4ea2e0ed75b0 431 SMART SM00788 3 424 5.5E-279 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RD1_RS08845 c738b2f29caf747e6d9e4ea2e0ed75b0 431 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 134 145 - T 23-04-2016 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|UniPathway: UPA00075 RD1_RS08845 c738b2f29caf747e6d9e4ea2e0ed75b0 431 Gene3D G3DSA:1.10.300.10 103 195 3.5E-27 T 23-04-2016 RD1_RS08845 c738b2f29caf747e6d9e4ea2e0ed75b0 431 PANTHER PTHR11846 2 428 1.1E-214 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RD1_RS08845 c738b2f29caf747e6d9e4ea2e0ed75b0 431 Gene3D G3DSA:3.90.170.10 267 425 5.8E-69 T 23-04-2016 RD1_RS08845 c738b2f29caf747e6d9e4ea2e0ed75b0 431 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 23-04-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RD1_RS08845 c738b2f29caf747e6d9e4ea2e0ed75b0 431 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 428 1.0E-156 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RD1_RS08845 c738b2f29caf747e6d9e4ea2e0ed75b0 431 Pfam PF00709 Adenylosuccinate synthetase 4 423 2.4E-167 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RD1_RS08845 c738b2f29caf747e6d9e4ea2e0ed75b0 431 Gene3D G3DSA:3.40.440.10 1 93 3.1E-66 T 23-04-2016 RD1_RS08845 c738b2f29caf747e6d9e4ea2e0ed75b0 431 Gene3D G3DSA:3.40.440.10 196 266 3.1E-66 T 23-04-2016 RD1_RS18740 d570312593480ffee9c1cdac885dc4ff 120 SUPERFAMILY SSF54211 4 117 1.93E-25 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS18740 d570312593480ffee9c1cdac885dc4ff 120 Gene3D G3DSA:3.30.230.30 6 116 1.2E-26 T 23-04-2016 IPR001498 Impact, N-terminal RD1_RS18740 d570312593480ffee9c1cdac885dc4ff 120 Pfam PF01205 Uncharacterized protein family UPF0029 11 111 6.8E-22 T 23-04-2016 IPR001498 Impact, N-terminal RD1_RS18740 d570312593480ffee9c1cdac885dc4ff 120 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 68 97 - T 23-04-2016 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site RD1_RS18740 d570312593480ffee9c1cdac885dc4ff 120 PANTHER PTHR16301 21 109 6.3E-19 T 23-04-2016 IPR023582 Impact family RD1_RS15870 30486cea595bb1c6f812cd4148b61720 96 PANTHER PTHR33215 1 95 1.7E-31 T 23-04-2016 RD1_RS15870 30486cea595bb1c6f812cd4148b61720 96 Gene3D G3DSA:1.10.10.60 7 90 5.0E-25 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS15870 30486cea595bb1c6f812cd4148b61720 96 SUPERFAMILY SSF46689 1 94 2.51E-23 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS15870 30486cea595bb1c6f812cd4148b61720 96 Pfam PF01527 Transposase 2 75 1.3E-15 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RD1_RS14970 a9545be866c99284e952b3435d8a8863 378 PANTHER PTHR24220 19 261 2.2E-105 T 23-04-2016 RD1_RS14970 a9545be866c99284e952b3435d8a8863 378 Gene3D G3DSA:3.40.50.300 12 253 2.0E-78 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14970 a9545be866c99284e952b3435d8a8863 378 Pfam PF08402 TOBE domain 286 368 9.4E-6 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS14970 a9545be866c99284e952b3435d8a8863 378 SUPERFAMILY SSF52540 18 258 1.27E-79 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14970 a9545be866c99284e952b3435d8a8863 378 PANTHER PTHR24220:SF282 19 261 2.2E-105 T 23-04-2016 RD1_RS14970 a9545be866c99284e952b3435d8a8863 378 Pfam PF00005 ABC transporter 33 177 1.5E-35 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS14970 a9545be866c99284e952b3435d8a8863 378 SMART SM00382 42 227 2.3E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS14970 a9545be866c99284e952b3435d8a8863 378 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS14970 a9545be866c99284e952b3435d8a8863 378 SUPERFAMILY SSF50331 261 370 1.26E-11 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS16665 d4f1d349d06fcb7d59d524fb7f7dee7c 359 Gene3D G3DSA:2.40.50.140 283 340 1.2E-9 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS16665 d4f1d349d06fcb7d59d524fb7f7dee7c 359 SUPERFAMILY SSF50331 236 355 5.83E-25 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS16665 d4f1d349d06fcb7d59d524fb7f7dee7c 359 SUPERFAMILY SSF52540 4 242 5.61E-86 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16665 d4f1d349d06fcb7d59d524fb7f7dee7c 359 Gene3D G3DSA:2.40.50.100 341 353 1.0E-6 T 23-04-2016 RD1_RS16665 d4f1d349d06fcb7d59d524fb7f7dee7c 359 Gene3D G3DSA:2.40.50.100 239 282 1.0E-6 T 23-04-2016 RD1_RS16665 d4f1d349d06fcb7d59d524fb7f7dee7c 359 PANTHER PTHR24220:SF151 5 291 3.1E-157 T 23-04-2016 RD1_RS16665 d4f1d349d06fcb7d59d524fb7f7dee7c 359 Pfam PF08402 TOBE domain 278 347 8.9E-7 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS16665 d4f1d349d06fcb7d59d524fb7f7dee7c 359 SMART SM00382 28 211 2.9E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS16665 d4f1d349d06fcb7d59d524fb7f7dee7c 359 PANTHER PTHR24220 5 291 3.1E-157 T 23-04-2016 RD1_RS16665 d4f1d349d06fcb7d59d524fb7f7dee7c 359 Gene3D G3DSA:3.40.50.300 4 234 2.1E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16665 d4f1d349d06fcb7d59d524fb7f7dee7c 359 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS16665 d4f1d349d06fcb7d59d524fb7f7dee7c 359 Pfam PF00005 ABC transporter 19 161 9.7E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS17310 c5948c9360a90a11fc014963f7915f96 407 Pfam PF00155 Aminotransferase class I and II 46 390 1.8E-76 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS17310 c5948c9360a90a11fc014963f7915f96 407 PANTHER PTHR13693:SF57 2 401 3.2E-223 T 23-04-2016 RD1_RS17310 c5948c9360a90a11fc014963f7915f96 407 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 1 401 5.0E-201 T 23-04-2016 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: REACT_9431|UniPathway: UPA00251 RD1_RS17310 c5948c9360a90a11fc014963f7915f96 407 SUPERFAMILY SSF53383 6 397 2.29E-110 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS17310 c5948c9360a90a11fc014963f7915f96 407 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 244 253 - T 23-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 RD1_RS17310 c5948c9360a90a11fc014963f7915f96 407 Gene3D G3DSA:3.90.1150.10 282 392 5.9E-25 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS17310 c5948c9360a90a11fc014963f7915f96 407 Gene3D G3DSA:3.40.640.10 61 281 2.5E-88 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS17310 c5948c9360a90a11fc014963f7915f96 407 PANTHER PTHR13693 2 401 3.2E-223 T 23-04-2016 RD1_RS11025 06ffc2d97450fd2dcdbd91737d6fe139 423 Gene3D G3DSA:1.20.1250.20 14 198 3.2E-9 T 23-04-2016 RD1_RS11025 06ffc2d97450fd2dcdbd91737d6fe139 423 SUPERFAMILY SSF103473 7 422 1.57E-19 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS11025 06ffc2d97450fd2dcdbd91737d6fe139 423 PANTHER PTHR23547:SF1 14 412 1.8E-119 T 23-04-2016 RD1_RS11025 06ffc2d97450fd2dcdbd91737d6fe139 423 Gene3D G3DSA:1.20.1250.20 221 422 2.6E-4 T 23-04-2016 RD1_RS11025 06ffc2d97450fd2dcdbd91737d6fe139 423 PANTHER PTHR23547 14 412 1.8E-119 T 23-04-2016 RD1_RS16920 358a0e1e405d04102f4cd8b0202aa9d6 381 Gene3D G3DSA:2.40.110.10 123 223 2.1E-35 T 23-04-2016 RD1_RS16920 358a0e1e405d04102f4cd8b0202aa9d6 381 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RD1_RS16920 358a0e1e405d04102f4cd8b0202aa9d6 381 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 124 211 4.3E-24 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RD1_RS16920 358a0e1e405d04102f4cd8b0202aa9d6 381 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 120 1.8E-18 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS16920 358a0e1e405d04102f4cd8b0202aa9d6 381 PANTHER PTHR10909 7 380 1.5E-139 T 23-04-2016 RD1_RS16920 358a0e1e405d04102f4cd8b0202aa9d6 381 Gene3D G3DSA:1.10.540.10 8 118 4.6E-26 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS16920 358a0e1e405d04102f4cd8b0202aa9d6 381 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 378 2.6E-47 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS16920 358a0e1e405d04102f4cd8b0202aa9d6 381 Gene3D G3DSA:1.20.140.10 224 379 1.6E-60 T 23-04-2016 RD1_RS16920 358a0e1e405d04102f4cd8b0202aa9d6 381 SUPERFAMILY SSF56645 6 243 2.23E-68 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RD1_RS16920 358a0e1e405d04102f4cd8b0202aa9d6 381 PANTHER PTHR10909:SF305 7 380 1.5E-139 T 23-04-2016 RD1_RS16920 358a0e1e405d04102f4cd8b0202aa9d6 381 SUPERFAMILY SSF47203 228 379 3.06E-53 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS16930 f829268be1190c938c130660bbe31dbb 346 PANTHER PTHR21266 3 346 4.6E-76 T 23-04-2016 RD1_RS16930 f829268be1190c938c130660bbe31dbb 346 PANTHER PTHR21266:SF19 3 346 4.6E-76 T 23-04-2016 RD1_RS16930 f829268be1190c938c130660bbe31dbb 346 SUPERFAMILY SSF50022 2 112 2.1E-30 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS16930 f829268be1190c938c130660bbe31dbb 346 Pfam PF00355 Rieske [2Fe-2S] domain 7 86 1.6E-16 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS16930 f829268be1190c938c130660bbe31dbb 346 SUPERFAMILY SSF55961 103 339 3.77E-42 T 23-04-2016 RD1_RS16930 f829268be1190c938c130660bbe31dbb 346 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 139 334 1.8E-4 T 23-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 RD1_RS16930 f829268be1190c938c130660bbe31dbb 346 Gene3D G3DSA:2.102.10.10 5 116 5.7E-29 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS00545 6d924f6201aca4bc1de9eb3115592ba4 515 Gene3D G3DSA:3.50.50.60 226 308 1.4E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00545 6d924f6201aca4bc1de9eb3115592ba4 515 Gene3D G3DSA:3.50.50.60 478 506 1.4E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00545 6d924f6201aca4bc1de9eb3115592ba4 515 Gene3D G3DSA:3.50.50.60 387 398 1.4E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00545 6d924f6201aca4bc1de9eb3115592ba4 515 Gene3D G3DSA:3.50.50.60 19 94 1.4E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00545 6d924f6201aca4bc1de9eb3115592ba4 515 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 21 512 8.2E-187 T 23-04-2016 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 RD1_RS00545 6d924f6201aca4bc1de9eb3115592ba4 515 Pfam PF01593 Flavin containing amine oxidoreductase 28 501 2.0E-25 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RD1_RS00545 6d924f6201aca4bc1de9eb3115592ba4 515 SUPERFAMILY SSF51905 18 334 6.24E-64 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00545 6d924f6201aca4bc1de9eb3115592ba4 515 SUPERFAMILY SSF51905 470 505 6.24E-64 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00545 6d924f6201aca4bc1de9eb3115592ba4 515 PANTHER PTHR10668:SF4 21 515 1.0E-97 T 23-04-2016 RD1_RS00545 6d924f6201aca4bc1de9eb3115592ba4 515 PANTHER PTHR10668 21 515 1.0E-97 T 23-04-2016 RD1_RS13960 43d81dfe87f6bbf3c7b006a15a9f287f 77 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 21.973 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RD1_RS13960 43d81dfe87f6bbf3c7b006a15a9f287f 77 SMART SM00823 Phosphopantetheine attachment site 5 63 0.0023 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 RD1_RS13960 43d81dfe87f6bbf3c7b006a15a9f287f 77 Gene3D G3DSA:1.10.1200.10 3 75 4.3E-32 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain RD1_RS13960 43d81dfe87f6bbf3c7b006a15a9f287f 77 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 34 75 1.0E-15 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RD1_RS13960 43d81dfe87f6bbf3c7b006a15a9f287f 77 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site RD1_RS13960 43d81dfe87f6bbf3c7b006a15a9f287f 77 Pfam PF00550 Phosphopantetheine attachment site 6 73 6.5E-14 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain RD1_RS13960 43d81dfe87f6bbf3c7b006a15a9f287f 77 PANTHER PTHR20863 3 75 1.7E-26 T 23-04-2016 RD1_RS13960 43d81dfe87f6bbf3c7b006a15a9f287f 77 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 75 4.5E-32 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RD1_RS13960 43d81dfe87f6bbf3c7b006a15a9f287f 77 SUPERFAMILY SSF47336 1 75 8.38E-22 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain RD1_RS04240 a3e4cac904490e9ad356e686bbef8948 271 Gene3D G3DSA:3.40.50.300 22 254 5.9E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04240 a3e4cac904490e9ad356e686bbef8948 271 SMART SM00382 50 235 1.1E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS04240 a3e4cac904490e9ad356e686bbef8948 271 PANTHER PTHR24220:SF581 27 259 1.6E-116 T 23-04-2016 RD1_RS04240 a3e4cac904490e9ad356e686bbef8948 271 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS04240 a3e4cac904490e9ad356e686bbef8948 271 PANTHER PTHR24220 27 259 1.6E-116 T 23-04-2016 RD1_RS04240 a3e4cac904490e9ad356e686bbef8948 271 SUPERFAMILY SSF52540 26 245 3.78E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04240 a3e4cac904490e9ad356e686bbef8948 271 Pfam PF00005 ABC transporter 44 187 2.9E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS12785 9c3315ec154d497e86e83425756ba2cf 326 Pfam PF12697 Alpha/beta hydrolase family 62 315 1.2E-21 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS12785 9c3315ec154d497e86e83425756ba2cf 326 PRINTS PR00111 Alpha/beta hydrolase fold signature 86 101 6.8E-16 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS12785 9c3315ec154d497e86e83425756ba2cf 326 PRINTS PR00111 Alpha/beta hydrolase fold signature 152 165 6.8E-16 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS12785 9c3315ec154d497e86e83425756ba2cf 326 PRINTS PR00111 Alpha/beta hydrolase fold signature 138 151 6.8E-16 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS12785 9c3315ec154d497e86e83425756ba2cf 326 PRINTS PR00111 Alpha/beta hydrolase fold signature 265 279 6.8E-16 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS12785 9c3315ec154d497e86e83425756ba2cf 326 Gene3D G3DSA:3.40.50.1820 33 319 1.9E-50 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS12785 9c3315ec154d497e86e83425756ba2cf 326 PRINTS PR00412 Epoxide hydrolase signature 138 151 2.5E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RD1_RS12785 9c3315ec154d497e86e83425756ba2cf 326 PRINTS PR00412 Epoxide hydrolase signature 86 101 2.5E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RD1_RS12785 9c3315ec154d497e86e83425756ba2cf 326 PRINTS PR00412 Epoxide hydrolase signature 152 165 2.5E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RD1_RS12785 9c3315ec154d497e86e83425756ba2cf 326 PRINTS PR00412 Epoxide hydrolase signature 297 319 2.5E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RD1_RS12785 9c3315ec154d497e86e83425756ba2cf 326 PANTHER PTHR10992 37 322 2.1E-39 T 23-04-2016 RD1_RS12785 9c3315ec154d497e86e83425756ba2cf 326 SUPERFAMILY SSF53474 37 318 4.05E-53 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS13245 3748becbe4ec9d95410fd3241d4e1b67 807 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 638 650 - T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 RD1_RS13245 3748becbe4ec9d95410fd3241d4e1b67 807 Gene3D G3DSA:3.40.50.2000 464 778 3.7E-122 T 23-04-2016 RD1_RS13245 3748becbe4ec9d95410fd3241d4e1b67 807 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 11 792 0.0 T 23-04-2016 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 RD1_RS13245 3748becbe4ec9d95410fd3241d4e1b67 807 PANTHER PTHR11468 10 792 0.0 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 RD1_RS13245 3748becbe4ec9d95410fd3241d4e1b67 807 SUPERFAMILY SSF53756 9 794 5.65E-292 T 23-04-2016 RD1_RS13245 3748becbe4ec9d95410fd3241d4e1b67 807 Pfam PF00343 Carbohydrate phosphorylase 100 792 4.3E-288 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 RD1_RS13245 3748becbe4ec9d95410fd3241d4e1b67 807 PIRSF PIRSF000460 2 806 3.4E-207 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 RD1_RS13245 3748becbe4ec9d95410fd3241d4e1b67 807 PANTHER PTHR11468:SF3 10 792 0.0 T 23-04-2016 RD1_RS13245 3748becbe4ec9d95410fd3241d4e1b67 807 Gene3D G3DSA:3.40.50.2000 9 463 1.1E-177 T 23-04-2016 RD1_RS18255 56b7a3715875db02e128011e3424338c 253 PANTHER PTHR20275 1 241 6.5E-90 T 23-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RD1_RS18255 56b7a3715875db02e128011e3424338c 253 PANTHER PTHR20275:SF7 1 241 6.5E-90 T 23-04-2016 RD1_RS18255 56b7a3715875db02e128011e3424338c 253 Gene3D G3DSA:3.40.50.10330 24 108 1.7E-16 T 23-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RD1_RS18255 56b7a3715875db02e128011e3424338c 253 Hamap MF_00361 NAD kinase [nadK]. 3 253 19.952 T 23-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RD1_RS18255 56b7a3715875db02e128011e3424338c 253 SUPERFAMILY SSF111331 22 241 2.35E-53 T 23-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain RD1_RS18255 56b7a3715875db02e128011e3424338c 253 Gene3D G3DSA:2.60.200.30 109 223 1.8E-26 T 23-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RD1_RS18255 56b7a3715875db02e128011e3424338c 253 Pfam PF01513 ATP-NAD kinase 30 218 2.7E-18 T 23-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RD1_RS17860 243f425a498f67f75849ad77609062b5 346 PIRSF PIRSF012608 1 346 1.5E-96 T 23-04-2016 IPR011200 Uncharacterised conserved protein UCP012608 RD1_RS17860 243f425a498f67f75849ad77609062b5 346 Pfam PF10094 Uncharacterized protein conserved in bacteria (DUF2332) 4 342 4.6E-103 T 23-04-2016 IPR011200 Uncharacterised conserved protein UCP012608 RD1_RS00805 0645594d3b9b7d3d8d69960151fd6761 366 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS00805 0645594d3b9b7d3d8d69960151fd6761 366 SUPERFAMILY SSF50331 244 364 4.99E-20 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS00805 0645594d3b9b7d3d8d69960151fd6761 366 Pfam PF00005 ABC transporter 28 169 5.1E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS00805 0645594d3b9b7d3d8d69960151fd6761 366 PANTHER PTHR24220:SF402 12 356 1.7E-161 T 23-04-2016 RD1_RS00805 0645594d3b9b7d3d8d69960151fd6761 366 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 42 362 1.3E-112 T 23-04-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 RD1_RS00805 0645594d3b9b7d3d8d69960151fd6761 366 Gene3D G3DSA:3.40.50.300 4 246 9.0E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00805 0645594d3b9b7d3d8d69960151fd6761 366 PANTHER PTHR24220 12 356 1.7E-161 T 23-04-2016 RD1_RS00805 0645594d3b9b7d3d8d69960151fd6761 366 SUPERFAMILY SSF52540 11 248 4.37E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00805 0645594d3b9b7d3d8d69960151fd6761 366 Pfam PF08402 TOBE domain 286 364 1.7E-14 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS00805 0645594d3b9b7d3d8d69960151fd6761 366 SMART SM00382 36 219 1.6E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS17085 573e550d8c4378940671b7133f86f51f 870 SUPERFAMILY SSF56988 294 460 7.85E-18 T 23-04-2016 RD1_RS17085 573e550d8c4378940671b7133f86f51f 870 SMART SM00758 551 695 9.0E-19 T 23-04-2016 IPR011658 PA14 domain RD1_RS17085 573e550d8c4378940671b7133f86f51f 870 SMART SM00758 292 436 2.0E-9 T 23-04-2016 IPR011658 PA14 domain RD1_RS17085 573e550d8c4378940671b7133f86f51f 870 SUPERFAMILY SSF56988 553 686 1.96E-22 T 23-04-2016 RD1_RS17085 573e550d8c4378940671b7133f86f51f 870 Gene3D G3DSA:2.60.40.60 194 287 5.3E-4 T 23-04-2016 IPR002126 Cadherin GO:0005509|GO:0007156|GO:0016020 RD1_RS17085 573e550d8c4378940671b7133f86f51f 870 Gene3D G3DSA:3.90.182.10 547 768 4.4E-39 T 23-04-2016 IPR011658 PA14 domain RD1_RS17085 573e550d8c4378940671b7133f86f51f 870 Gene3D G3DSA:3.90.182.10 293 434 8.2E-29 T 23-04-2016 IPR011658 PA14 domain RD1_RS17085 573e550d8c4378940671b7133f86f51f 870 Pfam PF07691 PA14 domain 334 431 2.1E-10 T 23-04-2016 IPR011658 PA14 domain RD1_RS17085 573e550d8c4378940671b7133f86f51f 870 Pfam PF07691 PA14 domain 573 689 3.2E-14 T 23-04-2016 IPR011658 PA14 domain RD1_RS01025 843054ea9c49d04a29a210e986929510 621 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 221 354 1.1E-35 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RD1_RS01025 843054ea9c49d04a29a210e986929510 621 Gene3D G3DSA:3.40.50.970 404 583 3.0E-34 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS01025 843054ea9c49d04a29a210e986929510 621 SUPERFAMILY SSF52518 394 605 2.5E-36 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS01025 843054ea9c49d04a29a210e986929510 621 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 194 1.3E-34 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RD1_RS01025 843054ea9c49d04a29a210e986929510 621 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 456 475 - T 23-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RD1_RS01025 843054ea9c49d04a29a210e986929510 621 PANTHER PTHR18968:SF9 1 619 7.6E-169 T 23-04-2016 IPR030817 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22|UniPathway: UPA00076 RD1_RS01025 843054ea9c49d04a29a210e986929510 621 Gene3D G3DSA:3.40.50.970 2 214 3.5E-47 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS01025 843054ea9c49d04a29a210e986929510 621 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 433 573 5.5E-23 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RD1_RS01025 843054ea9c49d04a29a210e986929510 621 SUPERFAMILY SSF52467 183 382 5.11E-44 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS01025 843054ea9c49d04a29a210e986929510 621 Gene3D G3DSA:3.40.50.1220 215 403 4.0E-51 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS01025 843054ea9c49d04a29a210e986929510 621 SUPERFAMILY SSF52518 5 211 1.18E-29 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS01025 843054ea9c49d04a29a210e986929510 621 PANTHER PTHR18968 1 619 7.6E-169 T 23-04-2016 RD1_RS01025 843054ea9c49d04a29a210e986929510 621 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 7 618 2.3E-238 T 23-04-2016 IPR030817 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22|UniPathway: UPA00076 RD1_RS04685 3578bc23da0eb63bd7d329155cecfc47 142 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 1 142 24.131 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RD1_RS04685 3578bc23da0eb63bd7d329155cecfc47 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 4 18 1.1E-10 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RD1_RS04685 3578bc23da0eb63bd7d329155cecfc47 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 98 107 1.1E-10 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RD1_RS04685 3578bc23da0eb63bd7d329155cecfc47 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 89 97 1.1E-10 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RD1_RS04685 3578bc23da0eb63bd7d329155cecfc47 142 SUPERFAMILY SSF81330 11 124 1.7E-33 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RD1_RS04685 3578bc23da0eb63bd7d329155cecfc47 142 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 1 141 1.4E-36 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RD1_RS04685 3578bc23da0eb63bd7d329155cecfc47 142 PANTHER PTHR30266:SF2 1 141 6.6E-44 T 23-04-2016 RD1_RS04685 3578bc23da0eb63bd7d329155cecfc47 142 PANTHER PTHR30266 1 141 6.6E-44 T 23-04-2016 RD1_RS04685 3578bc23da0eb63bd7d329155cecfc47 142 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 1 138 1.9E-42 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RD1_RS04685 3578bc23da0eb63bd7d329155cecfc47 142 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 11 24 - T 23-04-2016 IPR019823 Large-conductance mechanosensitive channel, conserved site RD1_RS14480 15986c6ee1178125a0aaea8cd7fdc4d2 602 Gene3D G3DSA:3.40.50.300 281 502 9.4E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14480 15986c6ee1178125a0aaea8cd7fdc4d2 602 Gene3D G3DSA:3.40.50.300 8 228 3.8E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14480 15986c6ee1178125a0aaea8cd7fdc4d2 602 ProSitePatterns PS00211 ABC transporters family signature. 412 426 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS14480 15986c6ee1178125a0aaea8cd7fdc4d2 602 SUPERFAMILY SSF52540 5 197 4.06E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14480 15986c6ee1178125a0aaea8cd7fdc4d2 602 SMART SM00382 31 193 3.5E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS14480 15986c6ee1178125a0aaea8cd7fdc4d2 602 SMART SM00382 307 486 8.6E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS14480 15986c6ee1178125a0aaea8cd7fdc4d2 602 PANTHER PTHR19211 389 539 2.2E-160 T 23-04-2016 RD1_RS14480 15986c6ee1178125a0aaea8cd7fdc4d2 602 PANTHER PTHR19211 7 372 2.2E-160 T 23-04-2016 RD1_RS14480 15986c6ee1178125a0aaea8cd7fdc4d2 602 Pfam PF00005 ABC transporter 299 440 2.5E-22 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS14480 15986c6ee1178125a0aaea8cd7fdc4d2 602 Pfam PF00005 ABC transporter 23 148 5.0E-22 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS14480 15986c6ee1178125a0aaea8cd7fdc4d2 602 Pfam PF16326 ABC transporter C-terminal domain 530 598 4.2E-15 T 23-04-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 RD1_RS14480 15986c6ee1178125a0aaea8cd7fdc4d2 602 SUPERFAMILY SSF52540 271 487 2.02E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17360 c0f5531a60a7e29d6f534a696453f32f 362 PANTHER PTHR11835:SF34 1 359 9.8E-132 T 23-04-2016 RD1_RS17360 c0f5531a60a7e29d6f534a696453f32f 362 SMART SM01329 6 355 5.6E-144 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RD1_RS17360 c0f5531a60a7e29d6f534a696453f32f 362 PANTHER PTHR11835 1 359 9.8E-132 T 23-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RD1_RS17360 c0f5531a60a7e29d6f534a696453f32f 362 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 23-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RD1_RS17360 c0f5531a60a7e29d6f534a696453f32f 362 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 352 1.4E-86 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RD1_RS17360 c0f5531a60a7e29d6f534a696453f32f 362 SUPERFAMILY SSF53659 2 359 1.18E-100 T 23-04-2016 RD1_RS17360 c0f5531a60a7e29d6f534a696453f32f 362 Gene3D G3DSA:3.40.718.10 1 359 9.5E-103 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RD1_RS18285 963eef86e5580751168bfa1047514f47 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 188 0.0019 T 23-04-2016 RD1_RS18285 963eef86e5580751168bfa1047514f47 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.2E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18285 963eef86e5580751168bfa1047514f47 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 1.2E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18285 963eef86e5580751168bfa1047514f47 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.2E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18285 963eef86e5580751168bfa1047514f47 247 Gene3D G3DSA:3.40.50.720 2 245 1.5E-79 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS18285 963eef86e5580751168bfa1047514f47 247 SUPERFAMILY SSF51735 5 245 7.83E-76 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS18285 963eef86e5580751168bfa1047514f47 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 244 1.0E-60 T 23-04-2016 RD1_RS18285 963eef86e5580751168bfa1047514f47 247 PANTHER PTHR24322 154 184 1.3E-49 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18285 963eef86e5580751168bfa1047514f47 247 PANTHER PTHR24322 10 137 1.3E-49 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18285 963eef86e5580751168bfa1047514f47 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 7.3E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18285 963eef86e5580751168bfa1047514f47 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 7.3E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18285 963eef86e5580751168bfa1047514f47 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 7.3E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18285 963eef86e5580751168bfa1047514f47 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 7.3E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18285 963eef86e5580751168bfa1047514f47 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 7.3E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18285 963eef86e5580751168bfa1047514f47 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 7.3E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS16255 892dc93d8d45a21f3e9eff8a0ce0d68b 138 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 83 2.5E-21 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RD1_RS16255 892dc93d8d45a21f3e9eff8a0ce0d68b 138 SUPERFAMILY SSF51344 4 84 1.83E-19 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RD1_RS16255 892dc93d8d45a21f3e9eff8a0ce0d68b 138 Gene3D G3DSA:2.60.15.10 1 87 4.9E-24 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RD1_RS16255 892dc93d8d45a21f3e9eff8a0ce0d68b 138 PANTHER PTHR13822 1 109 1.2E-19 T 23-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RD1_RS16255 892dc93d8d45a21f3e9eff8a0ce0d68b 138 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 112 1.1E-21 T 23-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RD1_RS16255 892dc93d8d45a21f3e9eff8a0ce0d68b 138 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 138 16.309 T 23-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RD1_RS16255 892dc93d8d45a21f3e9eff8a0ce0d68b 138 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 88 2.0E-29 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RD1_RS17745 40b25b074130cd3a8712770d48fd8b6d 378 SUPERFAMILY SSF55347 138 316 6.05E-33 T 23-04-2016 RD1_RS17745 40b25b074130cd3a8712770d48fd8b6d 378 PANTHER PTHR22604:SF123 5 375 5.5E-97 T 23-04-2016 RD1_RS17745 40b25b074130cd3a8712770d48fd8b6d 378 Gene3D G3DSA:3.40.50.720 2 152 2.7E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17745 40b25b074130cd3a8712770d48fd8b6d 378 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 130 2.9E-26 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RD1_RS17745 40b25b074130cd3a8712770d48fd8b6d 378 Gene3D G3DSA:3.30.360.10 153 282 6.0E-40 T 23-04-2016 RD1_RS17745 40b25b074130cd3a8712770d48fd8b6d 378 Gene3D G3DSA:3.30.360.10 330 376 6.0E-40 T 23-04-2016 RD1_RS17745 40b25b074130cd3a8712770d48fd8b6d 378 SUPERFAMILY SSF51735 3 164 3.0E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17745 40b25b074130cd3a8712770d48fd8b6d 378 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 144 224 4.5E-7 T 23-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS17745 40b25b074130cd3a8712770d48fd8b6d 378 PANTHER PTHR22604 5 375 5.5E-97 T 23-04-2016 RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 SUPERFAMILY SSF52029 184 376 1.06E-85 T 23-04-2016 IPR027409 GroEL-like apical domain RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 Gene3D G3DSA:3.50.7.10 189 366 9.6E-102 T 23-04-2016 IPR027409 GroEL-like apical domain RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 Gene3D G3DSA:1.10.560.10 3 188 1.9E-45 T 23-04-2016 IPR027413 GroEL-like equatorial domain RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 SUPERFAMILY SSF48592 406 522 2.0E-77 T 23-04-2016 RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 SUPERFAMILY SSF48592 7 134 2.0E-77 T 23-04-2016 RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 527 2.0E-259 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 PRINTS PR00298 60kDa chaperonin signature 27 53 1.2E-73 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 PRINTS PR00298 60kDa chaperonin signature 350 375 1.2E-73 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 PRINTS PR00298 60kDa chaperonin signature 83 110 1.2E-73 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 PRINTS PR00298 60kDa chaperonin signature 398 419 1.2E-73 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 PRINTS PR00298 60kDa chaperonin signature 268 291 1.2E-73 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 PANTHER PTHR11353 2 547 2.1E-255 T 23-04-2016 RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 525 9.4E-99 T 23-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 Gene3D G3DSA:1.10.560.10 367 519 6.6E-42 T 23-04-2016 IPR027413 GroEL-like equatorial domain RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 SUPERFAMILY SSF54849 137 204 4.81E-22 T 23-04-2016 RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 23-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 RD1_RS16180 cd26912c2a4f758fb531bbbf935b01c5 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 546 42.174 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RD1_RS10755 f00dd8238c0758a70b60de8c6bc9ba31 466 PANTHER PTHR33362:SF5 392 463 1.5E-102 T 23-04-2016 RD1_RS10755 f00dd8238c0758a70b60de8c6bc9ba31 466 PANTHER PTHR33362:SF5 14 374 1.5E-102 T 23-04-2016 RD1_RS10755 f00dd8238c0758a70b60de8c6bc9ba31 466 PANTHER PTHR33362 392 463 1.5E-102 T 23-04-2016 RD1_RS10755 f00dd8238c0758a70b60de8c6bc9ba31 466 PANTHER PTHR33362 14 374 1.5E-102 T 23-04-2016 RD1_RS10755 f00dd8238c0758a70b60de8c6bc9ba31 466 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 13 457 4.6E-63 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS18855 7cc8cd9cbd314866e24211ef53e332a2 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 278 1.3E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18855 7cc8cd9cbd314866e24211ef53e332a2 287 Gene3D G3DSA:1.10.3720.10 55 283 2.6E-45 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18855 7cc8cd9cbd314866e24211ef53e332a2 287 SUPERFAMILY SSF161098 49 276 1.23E-49 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18855 7cc8cd9cbd314866e24211ef53e332a2 287 PANTHER PTHR30193:SF6 1 286 8.8E-75 T 23-04-2016 RD1_RS18855 7cc8cd9cbd314866e24211ef53e332a2 287 PANTHER PTHR30193 1 286 8.8E-75 T 23-04-2016 RD1_RS10020 f88ba7417e6d2ca00e8a00d92952893c 381 PANTHER PTHR11496 1 378 9.8E-106 T 23-04-2016 RD1_RS10020 f88ba7417e6d2ca00e8a00d92952893c 381 Gene3D G3DSA:3.40.50.1970 5 190 2.3E-53 T 23-04-2016 RD1_RS10020 f88ba7417e6d2ca00e8a00d92952893c 381 SUPERFAMILY SSF56796 6 379 7.33E-121 T 23-04-2016 RD1_RS10020 f88ba7417e6d2ca00e8a00d92952893c 381 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 265 285 - T 23-04-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RD1_RS10020 f88ba7417e6d2ca00e8a00d92952893c 381 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 371 2.4E-113 T 23-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 RD1_RS10020 f88ba7417e6d2ca00e8a00d92952893c 381 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 179 207 - T 23-04-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RD1_RS10020 f88ba7417e6d2ca00e8a00d92952893c 381 Gene3D G3DSA:1.20.1090.10 191 379 1.4E-57 T 23-04-2016 RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 SMART SM00267 395 565 7.0E-46 T 23-04-2016 IPR000160 GGDEF domain RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 Pfam PF00990 Diguanylate cyclase, GGDEF domain 407 560 3.7E-39 T 23-04-2016 IPR000160 GGDEF domain RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 Pfam PF00563 EAL domain 582 813 1.0E-59 T 23-04-2016 IPR001633 EAL domain RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 Pfam PF13426 PAS domain 31 108 6.9E-7 T 23-04-2016 IPR000014 PAS domain RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 SUPERFAMILY SSF141868 581 825 5.62E-64 T 23-04-2016 IPR001633 EAL domain RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 Gene3D G3DSA:3.20.20.450 579 825 2.2E-66 T 23-04-2016 IPR001633 EAL domain RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 Gene3D G3DSA:3.30.70.270 408 568 1.3E-49 T 23-04-2016 RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 PANTHER PTHR10799:SF710 791 810 6.6E-53 T 23-04-2016 RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 PANTHER PTHR10799:SF710 437 655 6.6E-53 T 23-04-2016 RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 SUPERFAMILY SSF55785 122 177 1.88E-5 T 23-04-2016 IPR000014 PAS domain RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 SUPERFAMILY SSF55785 31 131 5.64E-11 T 23-04-2016 IPR000014 PAS domain RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 32 131 2.3E-9 T 23-04-2016 IPR000014 PAS domain RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 404 562 6.2E-38 T 23-04-2016 IPR000160 GGDEF domain RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 SUPERFAMILY SSF55073 411 566 1.41E-41 T 23-04-2016 IPR029787 Nucleotide cyclase RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 SUPERFAMILY SSF55785 251 383 4.54E-8 T 23-04-2016 IPR000014 PAS domain RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 SMART SM00052 575 818 3.3E-76 T 23-04-2016 IPR001633 EAL domain RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 PANTHER PTHR10799 791 810 6.6E-53 T 23-04-2016 RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 PANTHER PTHR10799 437 655 6.6E-53 T 23-04-2016 RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 Gene3D G3DSA:3.30.450.20 30 121 3.7E-8 T 23-04-2016 RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 Gene3D G3DSA:3.30.450.20 250 384 2.5E-8 T 23-04-2016 RD1_RS16990 7afa8cb8e53db40e441e0a80da9af466 834 Gene3D G3DSA:3.30.450.20 124 248 2.0E-5 T 23-04-2016 RD1_RS09895 8e145e7bc5917ed68964ffee4faf6ec1 420 SUPERFAMILY SSF63411 231 416 4.67E-47 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RD1_RS09895 8e145e7bc5917ed68964ffee4faf6ec1 420 SUPERFAMILY SSF63411 5 206 1.23E-63 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RD1_RS09895 8e145e7bc5917ed68964ffee4faf6ec1 420 PANTHER PTHR11851 7 419 5.3E-137 T 23-04-2016 RD1_RS09895 8e145e7bc5917ed68964ffee4faf6ec1 420 Gene3D G3DSA:3.30.830.10 220 411 8.8E-61 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RD1_RS09895 8e145e7bc5917ed68964ffee4faf6ec1 420 Pfam PF05193 Peptidase M16 inactive domain 167 337 5.0E-38 T 23-04-2016 IPR007863 Peptidase M16, C-terminal RD1_RS09895 8e145e7bc5917ed68964ffee4faf6ec1 420 Pfam PF00675 Insulinase (Peptidase family M16) 13 160 1.2E-43 T 23-04-2016 IPR011765 Peptidase M16, N-terminal RD1_RS09895 8e145e7bc5917ed68964ffee4faf6ec1 420 Gene3D G3DSA:3.30.830.10 6 213 6.8E-65 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RD1_RS09895 8e145e7bc5917ed68964ffee4faf6ec1 420 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 34 57 - T 23-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 RD1_RS03195 18950e6a0583c0711e78678f59f2d4b6 409 Gene3D G3DSA:1.20.1250.20 215 400 6.3E-7 T 23-04-2016 RD1_RS03195 18950e6a0583c0711e78678f59f2d4b6 409 Gene3D G3DSA:1.20.1250.20 11 191 1.4E-4 T 23-04-2016 RD1_RS03195 18950e6a0583c0711e78678f59f2d4b6 409 Pfam PF13347 MFS/sugar transport protein 13 407 1.4E-54 T 23-04-2016 RD1_RS03195 18950e6a0583c0711e78678f59f2d4b6 409 SUPERFAMILY SSF103473 6 127 1.31E-8 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS03195 18950e6a0583c0711e78678f59f2d4b6 409 SUPERFAMILY SSF103473 152 401 4.58E-10 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS09285 0441ff417eedd7b986d8514904c47bd2 446 SUPERFAMILY SSF51556 57 368 3.63E-91 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS09285 0441ff417eedd7b986d8514904c47bd2 446 SUPERFAMILY SSF51338 11 57 1.19E-19 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS09285 0441ff417eedd7b986d8514904c47bd2 446 SUPERFAMILY SSF51338 370 442 1.19E-19 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS09285 0441ff417eedd7b986d8514904c47bd2 446 Pfam PF01979 Amidohydrolase family 54 415 2.7E-54 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RD1_RS09285 0441ff417eedd7b986d8514904c47bd2 446 Gene3D G3DSA:3.20.20.140 66 387 4.2E-102 T 23-04-2016 RD1_RS09285 0441ff417eedd7b986d8514904c47bd2 446 PANTHER PTHR11271:SF37 4 444 3.2E-171 T 23-04-2016 RD1_RS09285 0441ff417eedd7b986d8514904c47bd2 446 PANTHER PTHR11271 4 444 3.2E-171 T 23-04-2016 RD1_RS09285 0441ff417eedd7b986d8514904c47bd2 446 Gene3D G3DSA:2.30.40.10 6 65 9.6E-13 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 Pfam PF01926 50S ribosome-binding GTPase 215 300 2.8E-20 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 214 300 5.2E-17 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 SUPERFAMILY SSF103025 1 117 4.51E-36 T 23-04-2016 RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 Gene3D G3DSA:1.20.120.430 119 179 9.3E-53 T 23-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 Gene3D G3DSA:1.20.120.430 357 428 9.3E-53 T 23-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 Gene3D G3DSA:1.20.120.430 244 268 9.3E-53 T 23-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 2 428 30.373 T 23-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 Gene3D G3DSA:3.40.50.300 211 243 9.4E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 PANTHER PTHR11649:SF56 5 428 3.4E-139 T 23-04-2016 RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 PANTHER PTHR11649 5 428 3.4E-139 T 23-04-2016 RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 SUPERFAMILY SSF116878 352 428 1.05E-42 T 23-04-2016 RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 SUPERFAMILY SSF116878 118 217 1.05E-42 T 23-04-2016 RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 Pfam PF10396 GTP-binding protein TrmE N-terminus 3 117 2.0E-35 T 23-04-2016 IPR018948 GTP-binding protein TrmE, N-terminal RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 216 236 3.0E-6 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 265 280 3.0E-6 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 Gene3D G3DSA:3.30.1360.120 1 118 3.2E-40 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 SUPERFAMILY SSF52540 213 353 4.69E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02020 d982459e3bf63c6782cf3b25254cd290 428 Pfam PF12631 MnmE helical domain 120 425 4.8E-48 T 23-04-2016 IPR025867 MnmE, helical domain RD1_RS16075 db98b6ecbb7cd34ca97a2f5534e1e0fe 193 PANTHER PTHR11441 1 193 1.7E-59 T 23-04-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 RD1_RS16075 db98b6ecbb7cd34ca97a2f5534e1e0fe 193 PIRSF PIRSF035805 1 193 7.7E-56 T 23-04-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 RD1_RS16075 db98b6ecbb7cd34ca97a2f5534e1e0fe 193 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 173 186 - T 23-04-2016 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 RD1_RS16075 db98b6ecbb7cd34ca97a2f5534e1e0fe 193 SUPERFAMILY SSF52540 1 140 3.04E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16075 db98b6ecbb7cd34ca97a2f5534e1e0fe 193 Gene3D G3DSA:3.30.60.20 142 189 1.3E-17 T 23-04-2016 RD1_RS16075 db98b6ecbb7cd34ca97a2f5534e1e0fe 193 Gene3D G3DSA:3.40.50.300 14 108 1.2E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16075 db98b6ecbb7cd34ca97a2f5534e1e0fe 193 Pfam PF00265 Thymidine kinase 2 186 3.7E-50 T 23-04-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 RD1_RS16075 db98b6ecbb7cd34ca97a2f5534e1e0fe 193 SUPERFAMILY SSF57716 142 190 3.23E-16 T 23-04-2016 RD1_RS16075 db98b6ecbb7cd34ca97a2f5534e1e0fe 193 Hamap MF_00124 Thymidine kinase [tdk]. 1 189 34.235 T 23-04-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 RD1_RS10270 b18ca5477c1f998274b342e5c31a6ae0 521 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 64 427 3.6E-75 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain RD1_RS10270 b18ca5477c1f998274b342e5c31a6ae0 521 PANTHER PTHR30290:SF24 24 521 3.7E-116 T 23-04-2016 RD1_RS10270 b18ca5477c1f998274b342e5c31a6ae0 521 Gene3D G3DSA:3.10.105.10 297 493 1.0E-51 T 23-04-2016 RD1_RS10270 b18ca5477c1f998274b342e5c31a6ae0 521 Gene3D G3DSA:3.40.190.10 183 296 3.0E-28 T 23-04-2016 RD1_RS10270 b18ca5477c1f998274b342e5c31a6ae0 521 PANTHER PTHR30290 24 521 3.7E-116 T 23-04-2016 RD1_RS10270 b18ca5477c1f998274b342e5c31a6ae0 521 SUPERFAMILY SSF53850 20 520 1.41E-118 T 23-04-2016 RD1_RS10270 b18ca5477c1f998274b342e5c31a6ae0 521 PIRSF PIRSF002741 16 510 3.0E-81 T 23-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RD1_RS10270 b18ca5477c1f998274b342e5c31a6ae0 521 Gene3D G3DSA:3.90.76.10 30 182 1.5E-32 T 23-04-2016 RD1_RS16825 0dd18d17a3083e75525fc8b4a90cfcf1 347 SUPERFAMILY SSF82282 13 342 5.1E-96 T 23-04-2016 IPR003726 Homocysteine-binding domain RD1_RS16825 0dd18d17a3083e75525fc8b4a90cfcf1 347 Gene3D G3DSA:3.20.20.330 10 345 8.8E-111 T 23-04-2016 IPR003726 Homocysteine-binding domain RD1_RS16825 0dd18d17a3083e75525fc8b4a90cfcf1 347 Pfam PF02574 Homocysteine S-methyltransferase 21 333 8.4E-89 T 23-04-2016 IPR003726 Homocysteine-binding domain RD1_RS16825 0dd18d17a3083e75525fc8b4a90cfcf1 347 PANTHER PTHR21091 17 336 2.0E-148 T 23-04-2016 RD1_RS16825 0dd18d17a3083e75525fc8b4a90cfcf1 347 PANTHER PTHR21091:SF112 17 336 2.0E-148 T 23-04-2016 RD1_RS07925 5964b31d555e714568885de2d077f6b7 233 Gene3D G3DSA:1.10.10.10 11 76 4.3E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07925 5964b31d555e714568885de2d077f6b7 233 SMART SM00866 92 228 8.8E-18 T 23-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RD1_RS07925 5964b31d555e714568885de2d077f6b7 233 Pfam PF07702 UTRA domain 93 222 2.8E-20 T 23-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RD1_RS07925 5964b31d555e714568885de2d077f6b7 233 SMART SM00345 12 71 6.7E-14 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS07925 5964b31d555e714568885de2d077f6b7 233 Gene3D G3DSA:3.40.1410.10 89 223 1.6E-30 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RD1_RS07925 5964b31d555e714568885de2d077f6b7 233 SUPERFAMILY SSF46785 10 82 6.54E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07925 5964b31d555e714568885de2d077f6b7 233 SUPERFAMILY SSF64288 59 226 2.98E-29 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RD1_RS07925 5964b31d555e714568885de2d077f6b7 233 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 1.3E-15 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS07555 eeb74f479b2694f0f8de60df40f38d56 655 PANTHER PTHR23408:SF15 6 627 1.6E-268 T 23-04-2016 RD1_RS07555 eeb74f479b2694f0f8de60df40f38d56 655 Pfam PF01642 Methylmalonyl-CoA mutase 5 485 1.7E-124 T 23-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 RD1_RS07555 eeb74f479b2694f0f8de60df40f38d56 655 Gene3D G3DSA:3.20.20.240 5 487 4.6E-174 T 23-04-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 RD1_RS07555 eeb74f479b2694f0f8de60df40f38d56 655 SUPERFAMILY SSF51703 5 487 2.01E-156 T 23-04-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 RD1_RS07555 eeb74f479b2694f0f8de60df40f38d56 655 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 7 490 2.1E-134 T 23-04-2016 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0008152|GO:0031419 RD1_RS07555 eeb74f479b2694f0f8de60df40f38d56 655 PANTHER PTHR23408 6 627 1.6E-268 T 23-04-2016 RD1_RS07555 eeb74f479b2694f0f8de60df40f38d56 655 Pfam PF02310 B12 binding domain 523 626 1.6E-15 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS07555 eeb74f479b2694f0f8de60df40f38d56 655 SUPERFAMILY SSF52242 487 647 6.67E-50 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS07555 eeb74f479b2694f0f8de60df40f38d56 655 Gene3D G3DSA:3.40.50.280 490 644 2.2E-49 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS07555 eeb74f479b2694f0f8de60df40f38d56 655 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 520 643 3.4E-34 T 23-04-2016 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 RD1_RS02910 8a524b8a7ebc398825206d97549812a2 475 PANTHER PTHR11699 1 470 2.6E-201 T 23-04-2016 RD1_RS02910 8a524b8a7ebc398825206d97549812a2 475 Pfam PF00171 Aldehyde dehydrogenase family 13 469 1.1E-151 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RD1_RS02910 8a524b8a7ebc398825206d97549812a2 475 PANTHER PTHR11699:SF214 1 470 2.6E-201 T 23-04-2016 RD1_RS02910 8a524b8a7ebc398825206d97549812a2 475 SUPERFAMILY SSF53720 4 469 1.24E-149 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS02910 8a524b8a7ebc398825206d97549812a2 475 Gene3D G3DSA:3.40.605.10 3 260 5.7E-82 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RD1_RS02910 8a524b8a7ebc398825206d97549812a2 475 Gene3D G3DSA:3.40.309.10 261 449 1.3E-61 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RD1_RS02910 8a524b8a7ebc398825206d97549812a2 475 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 272 283 - T 23-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RD1_RS10300 a7b98bab5f4ff4e2390ee8e35ad085fa 341 Gene3D G3DSA:1.10.443.10 135 332 3.6E-17 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RD1_RS10300 a7b98bab5f4ff4e2390ee8e35ad085fa 341 SUPERFAMILY SSF56349 133 331 2.41E-18 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RD1_RS10300 a7b98bab5f4ff4e2390ee8e35ad085fa 341 Pfam PF00589 Phage integrase family 149 325 5.8E-9 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RD1_RS18160 963252a9f407057ce84c0ab2d85987fc 133 Pfam PF00376 MerR family regulatory protein 7 41 2.0E-8 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RD1_RS18160 963252a9f407057ce84c0ab2d85987fc 133 Pfam PF09278 MerR, DNA binding 47 112 3.9E-15 T 23-04-2016 IPR015358 Transcription regulator MerR, DNA binding RD1_RS18160 963252a9f407057ce84c0ab2d85987fc 133 PANTHER PTHR30204 2 126 6.6E-20 T 23-04-2016 RD1_RS18160 963252a9f407057ce84c0ab2d85987fc 133 SMART SM00422 6 73 5.6E-19 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RD1_RS18160 963252a9f407057ce84c0ab2d85987fc 133 Gene3D G3DSA:1.10.1660.10 3 58 1.2E-19 T 23-04-2016 RD1_RS18160 963252a9f407057ce84c0ab2d85987fc 133 SUPERFAMILY SSF46955 6 116 3.66E-25 T 23-04-2016 IPR009061 Putative DNA-binding domain RD1_RS18160 963252a9f407057ce84c0ab2d85987fc 133 Gene3D G3DSA:1.10.1660.10 59 120 1.6E-15 T 23-04-2016 RD1_RS07575 d79b5d1ea7dedade768a5fced9042868 239 Gene3D G3DSA:3.30.450.80 7 179 9.5E-42 T 23-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RD1_RS07575 d79b5d1ea7dedade768a5fced9042868 239 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 191 1.5E-6 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS07575 d79b5d1ea7dedade768a5fced9042868 239 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 207 219 1.5E-6 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS07575 d79b5d1ea7dedade768a5fced9042868 239 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 191 207 1.5E-6 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS07575 d79b5d1ea7dedade768a5fced9042868 239 Pfam PF00196 Bacterial regulatory proteins, luxR family 176 230 6.8E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS07575 d79b5d1ea7dedade768a5fced9042868 239 Pfam PF03472 Autoinducer binding domain 21 161 2.3E-36 T 23-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RD1_RS07575 d79b5d1ea7dedade768a5fced9042868 239 SMART SM00421 174 231 3.6E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS07575 d79b5d1ea7dedade768a5fced9042868 239 SUPERFAMILY SSF46894 170 237 4.42E-15 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RD1_RS07575 d79b5d1ea7dedade768a5fced9042868 239 SUPERFAMILY SSF75516 8 167 6.02E-47 T 23-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RD1_RS07575 d79b5d1ea7dedade768a5fced9042868 239 Gene3D G3DSA:1.10.10.10 180 237 6.9E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS05430 70887f867803d4c3e911166bd3d0909b 239 Pfam PF00072 Response regulator receiver domain 25 124 4.9E-13 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS05430 70887f867803d4c3e911166bd3d0909b 239 SUPERFAMILY SSF52172 23 152 3.7E-19 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS05430 70887f867803d4c3e911166bd3d0909b 239 PANTHER PTHR26402 23 134 3.8E-15 T 23-04-2016 RD1_RS05430 70887f867803d4c3e911166bd3d0909b 239 SMART SM00448 23 134 1.2E-10 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS05430 70887f867803d4c3e911166bd3d0909b 239 Gene3D G3DSA:3.40.50.2300 23 135 5.4E-18 T 23-04-2016 RD1_RS07970 878aa78ce8852f88aa0776df5175f848 418 SUPERFAMILY SSF53850 22 409 8.62E-75 T 23-04-2016 RD1_RS07970 878aa78ce8852f88aa0776df5175f848 418 Gene3D G3DSA:3.40.190.10 140 340 2.4E-31 T 23-04-2016 RD1_RS07970 878aa78ce8852f88aa0776df5175f848 418 Pfam PF13416 Bacterial extracellular solute-binding protein 44 343 9.9E-38 T 23-04-2016 RD1_RS07970 878aa78ce8852f88aa0776df5175f848 418 PANTHER PTHR30061:SF1 9 418 2.2E-62 T 23-04-2016 RD1_RS07970 878aa78ce8852f88aa0776df5175f848 418 PANTHER PTHR30061 9 418 2.2E-62 T 23-04-2016 RD1_RS07970 878aa78ce8852f88aa0776df5175f848 418 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 134 151 - T 23-04-2016 IPR006061 Solute-binding family 1, conserved site GO:0005215|GO:0006810 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 Pfam PF00679 Elongation factor G C-terminus 402 485 1.1E-19 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RD1_RS04975 789712152e4381f79c8437cbcde95044 599 SUPERFAMILY SSF54980 295 373 1.98E-18 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RD1_RS04975 789712152e4381f79c8437cbcde95044 599 Pfam PF06421 GTP-binding protein LepA C-terminus 490 596 2.4E-49 T 23-04-2016 IPR013842 GTP-binding protein LepA, C-terminal RD1_RS04975 789712152e4381f79c8437cbcde95044 599 Pfam PF03144 Elongation factor Tu domain 2 208 278 1.8E-11 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 SUPERFAMILY SSF54980 402 496 1.1E-24 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RD1_RS04975 789712152e4381f79c8437cbcde95044 599 TIGRFAM TIGR01393 lepA: elongation factor 4 6 598 7.1E-290 T 23-04-2016 IPR006297 Elongation factor 4 GO:0005525 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 Gene3D G3DSA:3.30.70.870 295 372 1.4E-25 T 23-04-2016 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 PANTHER PTHR23115:SF175 400 598 0.0 T 23-04-2016 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 PANTHER PTHR23115:SF175 7 376 0.0 T 23-04-2016 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 599 299.365 T 23-04-2016 IPR006297 Elongation factor 4 GO:0005525 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 PANTHER PTHR23115 400 598 0.0 T 23-04-2016 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 PANTHER PTHR23115 7 376 0.0 T 23-04-2016 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 Gene3D G3DSA:3.40.50.300 4 195 6.9E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04975 789712152e4381f79c8437cbcde95044 599 Gene3D G3DSA:3.30.70.240 404 491 1.4E-19 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RD1_RS04975 789712152e4381f79c8437cbcde95044 599 SMART SM00838 401 487 0.001 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RD1_RS04975 789712152e4381f79c8437cbcde95044 599 SUPERFAMILY SSF52540 1 238 1.47E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04975 789712152e4381f79c8437cbcde95044 599 Pfam PF00009 Elongation factor Tu GTP binding domain 6 184 1.0E-48 T 23-04-2016 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 45 60 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site RD1_RS04975 789712152e4381f79c8437cbcde95044 599 PRINTS PR00315 GTP-binding elongation factor signature 9 22 3.0E-13 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 PRINTS PR00315 GTP-binding elongation factor signature 77 87 3.0E-13 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 PRINTS PR00315 GTP-binding elongation factor signature 93 104 3.0E-13 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 PRINTS PR00315 GTP-binding elongation factor signature 52 60 3.0E-13 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 PRINTS PR00315 GTP-binding elongation factor signature 129 138 3.0E-13 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 176 2.4E-18 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RD1_RS04975 789712152e4381f79c8437cbcde95044 599 Gene3D G3DSA:2.40.30.10 196 292 4.5E-25 T 23-04-2016 RD1_RS15120 fee6ff76f12c0175d09b16e60b8d9a9a 121 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 4 121 19.643 T 23-04-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 RD1_RS15120 fee6ff76f12c0175d09b16e60b8d9a9a 121 PANTHER PTHR11058:SF10 1 121 6.2E-70 T 23-04-2016 RD1_RS15120 fee6ff76f12c0175d09b16e60b8d9a9a 121 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 24 120 6.8E-39 T 23-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 RD1_RS15120 fee6ff76f12c0175d09b16e60b8d9a9a 121 PANTHER PTHR11058 1 121 6.2E-70 T 23-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 RD1_RS10070 04076ef33326881cfe9e300ee058c40f 202 PIRSF PIRSF015617 3 202 9.4E-67 T 23-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 RD1_RS10070 04076ef33326881cfe9e300ee058c40f 202 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 30 202 1.7E-56 T 23-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 RD1_RS10070 04076ef33326881cfe9e300ee058c40f 202 Gene3D G3DSA:3.40.50.300 4 202 1.3E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10070 04076ef33326881cfe9e300ee058c40f 202 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 28 202 1.8E-62 T 23-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 RD1_RS10070 04076ef33326881cfe9e300ee058c40f 202 PANTHER PTHR30069 7 202 4.3E-55 T 23-04-2016 RD1_RS10070 04076ef33326881cfe9e300ee058c40f 202 SUPERFAMILY SSF52540 10 202 1.26E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10070 04076ef33326881cfe9e300ee058c40f 202 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 2 23 9.7E-6 T 23-04-2016 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 RD1_RS14320 2e3fa14586c030a4d0731065128f3572 193 Pfam PF13975 gag-polyprotein putative aspartyl protease 87 177 2.8E-24 T 23-04-2016 RD1_RS14320 2e3fa14586c030a4d0731065128f3572 193 PANTHER PTHR41535 4 192 5.4E-17 T 23-04-2016 RD1_RS14320 2e3fa14586c030a4d0731065128f3572 193 PANTHER PTHR41535:SF1 4 192 5.4E-17 T 23-04-2016 RD1_RS14320 2e3fa14586c030a4d0731065128f3572 193 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 98 109 - T 23-04-2016 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 RD1_RS14320 2e3fa14586c030a4d0731065128f3572 193 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 75 192 1.5E-33 T 23-04-2016 IPR011969 Clan AA aspartic peptidase, C-terminal RD1_RS14320 2e3fa14586c030a4d0731065128f3572 193 SUPERFAMILY SSF50630 76 181 1.35E-19 T 23-04-2016 IPR021109 Aspartic peptidase domain RD1_RS15400 6c637a47bdf01e63c4e2b1f5dc73665e 309 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 194 301 9.8E-26 T 23-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15400 6c637a47bdf01e63c4e2b1f5dc73665e 309 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 309 86.738 T 23-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15400 6c637a47bdf01e63c4e2b1f5dc73665e 309 Gene3D G3DSA:3.90.78.10 216 305 1.5E-28 T 23-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15400 6c637a47bdf01e63c4e2b1f5dc73665e 309 Pfam PF01565 FAD binding domain 32 157 7.8E-18 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RD1_RS15400 6c637a47bdf01e63c4e2b1f5dc73665e 309 Gene3D G3DSA:3.30.465.10 81 215 8.9E-37 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RD1_RS15400 6c637a47bdf01e63c4e2b1f5dc73665e 309 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 20 300 5.8E-51 T 23-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15400 6c637a47bdf01e63c4e2b1f5dc73665e 309 Gene3D G3DSA:3.30.43.10 9 79 3.6E-16 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RD1_RS15400 6c637a47bdf01e63c4e2b1f5dc73665e 309 SUPERFAMILY SSF56194 191 304 4.71E-35 T 23-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15400 6c637a47bdf01e63c4e2b1f5dc73665e 309 PANTHER PTHR21071 4 309 2.4E-101 T 23-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15400 6c637a47bdf01e63c4e2b1f5dc73665e 309 PANTHER PTHR21071:SF4 4 309 2.4E-101 T 23-04-2016 RD1_RS15400 6c637a47bdf01e63c4e2b1f5dc73665e 309 SUPERFAMILY SSF56176 16 200 3.0E-40 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RD1_RS03300 e5ed25312f0e7a81ac938a547f2470da 243 SMART SM00934 10 229 6.1E-72 T 23-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS03300 e5ed25312f0e7a81ac938a547f2470da 243 PANTHER PTHR32119 1 241 1.6E-71 T 23-04-2016 RD1_RS03300 e5ed25312f0e7a81ac938a547f2470da 243 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 10 229 6.9E-40 T 23-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS03300 e5ed25312f0e7a81ac938a547f2470da 243 Gene3D G3DSA:3.20.20.70 9 233 3.5E-66 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS03300 e5ed25312f0e7a81ac938a547f2470da 243 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 63 76 - T 23-04-2016 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS03300 e5ed25312f0e7a81ac938a547f2470da 243 SUPERFAMILY SSF51366 9 232 1.45E-57 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RD1_RS03300 e5ed25312f0e7a81ac938a547f2470da 243 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 11 229 2.9E-45 T 23-04-2016 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS03300 e5ed25312f0e7a81ac938a547f2470da 243 PANTHER PTHR32119:SF2 1 241 1.6E-71 T 23-04-2016 RD1_RS02035 bd890ad500b9462988ab2fe79f1e81fd 199 PIRSF PIRSF006305 1 198 2.0E-33 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 RD1_RS02035 bd890ad500b9462988ab2fe79f1e81fd 199 Pfam PF02545 Maf-like protein 5 191 8.3E-35 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 RD1_RS02035 bd890ad500b9462988ab2fe79f1e81fd 199 Hamap MF_00528 Septum formation protein Maf [maf]. 4 198 22.193 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 RD1_RS02035 bd890ad500b9462988ab2fe79f1e81fd 199 Gene3D G3DSA:3.90.950.10 3 192 4.7E-42 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RD1_RS02035 bd890ad500b9462988ab2fe79f1e81fd 199 SUPERFAMILY SSF52972 2 191 9.81E-46 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RD1_RS09390 938e03a9ffe61e0d1db685e490c3657b 510 Gene3D G3DSA:3.90.226.10 254 510 3.4E-98 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS09390 938e03a9ffe61e0d1db685e490c3657b 510 Pfam PF01039 Carboxyl transferase domain 27 508 1.1E-193 T 23-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS09390 938e03a9ffe61e0d1db685e490c3657b 510 PANTHER PTHR22855 1 510 0.0 T 23-04-2016 RD1_RS09390 938e03a9ffe61e0d1db685e490c3657b 510 SUPERFAMILY SSF52096 3 249 2.84E-79 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS09390 938e03a9ffe61e0d1db685e490c3657b 510 PANTHER PTHR22855:SF40 1 510 0.0 T 23-04-2016 RD1_RS09390 938e03a9ffe61e0d1db685e490c3657b 510 SUPERFAMILY SSF52096 251 510 1.57E-87 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS09390 938e03a9ffe61e0d1db685e490c3657b 510 Gene3D G3DSA:3.90.226.10 2 253 1.6E-85 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS12615 0062098259adef3a1331f47917c3b16f 332 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 249 261 - T 23-04-2016 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS12615 0062098259adef3a1331f47917c3b16f 332 SMART SM01004 8 330 9.7E-225 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS12615 0062098259adef3a1331f47917c3b16f 332 Pfam PF00490 Delta-aminolevulinic acid dehydratase 11 328 3.2E-137 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS12615 0062098259adef3a1331f47917c3b16f 332 PANTHER PTHR11458 4 330 2.4E-166 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS12615 0062098259adef3a1331f47917c3b16f 332 PIRSF PIRSF001415 1 332 2.1E-141 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS12615 0062098259adef3a1331f47917c3b16f 332 Gene3D G3DSA:3.20.20.70 5 331 2.2E-143 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS12615 0062098259adef3a1331f47917c3b16f 332 SUPERFAMILY SSF51569 5 331 1.13E-137 T 23-04-2016 RD1_RS12615 0062098259adef3a1331f47917c3b16f 332 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 304 323 3.4E-54 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS12615 0062098259adef3a1331f47917c3b16f 332 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 158 177 3.4E-54 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS12615 0062098259adef3a1331f47917c3b16f 332 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 274 289 3.4E-54 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS12615 0062098259adef3a1331f47917c3b16f 332 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 249 265 3.4E-54 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS12615 0062098259adef3a1331f47917c3b16f 332 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 196 215 3.4E-54 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS12615 0062098259adef3a1331f47917c3b16f 332 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 128 142 3.4E-54 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS14670 87e9fc62307117d52480e3d521dbccae 153 PANTHER PTHR37953:SF1 32 148 6.3E-28 T 23-04-2016 RD1_RS14670 87e9fc62307117d52480e3d521dbccae 153 PANTHER PTHR37953 32 148 6.3E-28 T 23-04-2016 RD1_RS14670 87e9fc62307117d52480e3d521dbccae 153 Pfam PF02643 Uncharacterized ACR, COG1430 38 140 1.3E-29 T 23-04-2016 IPR003795 Protein of unknown function DUF192 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 Gene3D G3DSA:3.30.70.260 743 806 7.6E-6 T 23-04-2016 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 Gene3D G3DSA:3.30.70.260 845 901 4.1E-11 T 23-04-2016 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 47 925 277.284 T 23-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 Gene3D G3DSA:1.10.3210.10 469 664 3.1E-31 T 23-04-2016 IPR006674 HD domain RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 76 917 1.1E-267 T 23-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 Gene3D G3DSA:3.30.460.10 78 127 1.5E-6 T 23-04-2016 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 SUPERFAMILY SSF55021 845 914 5.86E-10 T 23-04-2016 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 28 141 1.5E-6 T 23-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 SUPERFAMILY SSF55021 740 804 2.09E-8 T 23-04-2016 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 SUPERFAMILY SSF81301 6 213 1.64E-38 T 23-04-2016 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 SUPERFAMILY SSF81891 401 643 3.14E-28 T 23-04-2016 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 Pfam PF01966 HD domain 500 621 8.4E-14 T 23-04-2016 IPR006674 HD domain RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 PANTHER PTHR13734:SF45 143 676 1.1E-90 T 23-04-2016 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 SUPERFAMILY SSF81593 233 351 4.24E-10 T 23-04-2016 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 PIRSF PIRSF006288 38 924 1.2E-301 T 23-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 Pfam PF08335 GlnD PII-uridylyltransferase 221 358 6.2E-37 T 23-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 SMART SM00471 495 642 2.2E-4 T 23-04-2016 IPR003607 HD/PDEase domain RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 Gene3D G3DSA:3.30.460.10 128 205 1.0E-5 T 23-04-2016 RD1_RS05475 974fc654bedd69b5ad2b42ad58a2fff8 925 PANTHER PTHR13734 143 676 1.1E-90 T 23-04-2016 RD1_RS10805 98186b4f6042643b37b88f48265bbd8d 300 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 4 274 1.9E-31 T 23-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD RD1_RS10805 98186b4f6042643b37b88f48265bbd8d 300 PANTHER PTHR40277 1 283 4.3E-25 T 23-04-2016 RD1_RS03915 4a997c055ad5404d8e9f0f092fa09460 295 SUPERFAMILY SSF56317 1 239 1.1E-48 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS03915 4a997c055ad5404d8e9f0f092fa09460 295 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 137 157 - T 23-04-2016 IPR001110 Uncharacterised protein family UPF0012, conserved site RD1_RS03915 4a997c055ad5404d8e9f0f092fa09460 295 Pfam PF00795 Carbon-nitrogen hydrolase 35 237 2.2E-29 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS03915 4a997c055ad5404d8e9f0f092fa09460 295 Gene3D G3DSA:3.60.110.10 2 248 5.5E-48 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS03915 4a997c055ad5404d8e9f0f092fa09460 295 PANTHER PTHR23088 1 267 1.3E-44 T 23-04-2016 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 Gene3D G3DSA:2.70.150.10 244 412 1.0E-34 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 Pfam PF00403 Heavy-metal-associated domain 21 80 6.2E-17 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 Pfam PF00403 Heavy-metal-associated domain 88 145 2.3E-14 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 SUPERFAMILY SSF81653 314 411 5.62E-29 T 23-04-2016 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 SUPERFAMILY SSF81665 412 507 9.15E-13 T 23-04-2016 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 SUPERFAMILY SSF81665 761 801 9.15E-13 T 23-04-2016 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 SUPERFAMILY SSF81665 264 315 9.15E-13 T 23-04-2016 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 244 821 4.5E-184 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 Gene3D G3DSA:3.40.50.1000 484 527 3.5E-56 T 23-04-2016 IPR023214 HAD-like domain RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 Gene3D G3DSA:3.40.50.1000 640 780 3.5E-56 T 23-04-2016 IPR023214 HAD-like domain RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 21 82 5.4E-11 T 23-04-2016 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 Pfam PF00122 E1-E2 ATPase 282 504 1.6E-66 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 SUPERFAMILY SSF56784 512 531 3.18E-58 T 23-04-2016 IPR023214 HAD-like domain RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 SUPERFAMILY SSF56784 592 819 3.18E-58 T 23-04-2016 IPR023214 HAD-like domain RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 712 728 5.3E-7 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 743 768 5.3E-7 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 515 521 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 283 789 1.8E-87 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 ProSitePatterns PS01047 Heavy-metal-associated domain. 91 120 - T 23-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 ProSitePatterns PS01047 Heavy-metal-associated domain. 24 53 - T 23-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 SUPERFAMILY SSF55008 86 149 1.83E-17 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 PANTHER PTHR24093 21 822 5.4E-260 T 23-04-2016 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 Gene3D G3DSA:3.30.70.100 20 82 4.2E-24 T 23-04-2016 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 Gene3D G3DSA:3.30.70.100 87 148 8.8E-20 T 23-04-2016 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 Gene3D G3DSA:3.40.1110.10 528 639 3.7E-24 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 Pfam PF00702 haloacid dehalogenase-like hydrolase 510 726 2.9E-42 T 23-04-2016 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 SUPERFAMILY SSF55008 15 82 5.5E-20 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 226 822 1.7E-175 T 23-04-2016 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 712 731 2.7E-28 T 23-04-2016 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 637 648 2.7E-28 T 23-04-2016 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 735 747 2.7E-28 T 23-04-2016 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 513 527 2.7E-28 T 23-04-2016 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 361 375 2.7E-28 T 23-04-2016 RD1_RS10615 2ab3dda8988eb82dbcc5564b5b73dcc8 847 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 659 669 2.7E-28 T 23-04-2016 RD1_RS08475 21af031c3d9e43792119b925a7a60916 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 59 9.1E-11 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS08475 21af031c3d9e43792119b925a7a60916 296 SUPERFAMILY SSF46785 1 85 6.12E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS08475 21af031c3d9e43792119b925a7a60916 296 Gene3D G3DSA:1.10.10.10 1 84 1.3E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS08475 21af031c3d9e43792119b925a7a60916 296 Pfam PF03466 LysR substrate binding domain 89 279 7.6E-10 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS08475 21af031c3d9e43792119b925a7a60916 296 PANTHER PTHR30126 1 265 2.4E-38 T 23-04-2016 RD1_RS08475 21af031c3d9e43792119b925a7a60916 296 SUPERFAMILY SSF53850 91 277 1.45E-11 T 23-04-2016 RD1_RS08475 21af031c3d9e43792119b925a7a60916 296 PANTHER PTHR30126:SF2 1 265 2.4E-38 T 23-04-2016 RD1_RS08475 21af031c3d9e43792119b925a7a60916 296 Gene3D G3DSA:3.40.190.10 228 265 1.1E-5 T 23-04-2016 RD1_RS01305 1ae407dfd1fa78f8cc227623ec5942bd 368 Pfam PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain 183 327 9.8E-37 T 23-04-2016 IPR003421 Opine dehydrogenase GO:0016491|GO:0050662|GO:0055114 RD1_RS01305 1ae407dfd1fa78f8cc227623ec5942bd 368 Pfam PF02558 Ketopantoate reductase PanE/ApbA 7 104 4.3E-7 T 23-04-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RD1_RS01305 1ae407dfd1fa78f8cc227623ec5942bd 368 SUPERFAMILY SSF48179 186 353 3.06E-44 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS01305 1ae407dfd1fa78f8cc227623ec5942bd 368 SUPERFAMILY SSF51735 6 176 1.2E-12 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS01305 1ae407dfd1fa78f8cc227623ec5942bd 368 Gene3D G3DSA:1.10.1040.10 193 344 1.7E-48 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS01305 1ae407dfd1fa78f8cc227623ec5942bd 368 Gene3D G3DSA:3.40.50.720 6 176 6.3E-16 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02900 29d414000f7df23ebf56c576a4bc8ba7 433 Gene3D G3DSA:3.40.50.2300 158 308 1.9E-9 T 23-04-2016 RD1_RS02900 29d414000f7df23ebf56c576a4bc8ba7 433 PANTHER PTHR30483 24 416 1.3E-28 T 23-04-2016 RD1_RS02900 29d414000f7df23ebf56c576a4bc8ba7 433 SUPERFAMILY SSF53822 25 384 1.22E-48 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS02900 29d414000f7df23ebf56c576a4bc8ba7 433 Gene3D G3DSA:3.40.50.2300 24 153 4.6E-19 T 23-04-2016 RD1_RS02900 29d414000f7df23ebf56c576a4bc8ba7 433 Gene3D G3DSA:3.40.50.2300 309 357 4.6E-19 T 23-04-2016 RD1_RS02900 29d414000f7df23ebf56c576a4bc8ba7 433 Pfam PF13458 Periplasmic binding protein 26 382 9.7E-63 T 23-04-2016 IPR028081 Leucine-binding protein domain RD1_RS10550 0eaa54a818746892a08ae19127269317 367 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 272 362 1.5E-13 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS10550 0eaa54a818746892a08ae19127269317 367 Gene3D G3DSA:3.30.70.1400 63 124 2.5E-14 T 23-04-2016 RD1_RS10550 0eaa54a818746892a08ae19127269317 367 SUPERFAMILY SSF103025 8 286 1.26E-68 T 23-04-2016 RD1_RS10550 0eaa54a818746892a08ae19127269317 367 PIRSF PIRSF006487 1 367 8.5E-77 T 23-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS10550 0eaa54a818746892a08ae19127269317 367 Pfam PF01571 Aminomethyltransferase folate-binding domain 30 262 7.8E-42 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS10550 0eaa54a818746892a08ae19127269317 367 Gene3D G3DSA:3.30.1360.120 147 229 6.8E-25 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS10550 0eaa54a818746892a08ae19127269317 367 Gene3D G3DSA:3.30.1360.120 10 62 6.8E-25 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS10550 0eaa54a818746892a08ae19127269317 367 Gene3D G3DSA:2.40.30.110 290 362 1.0E-12 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS10550 0eaa54a818746892a08ae19127269317 367 SUPERFAMILY SSF101790 292 363 1.42E-13 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RD1_RS13120 753f4b349a8a16fd7ab5988c2a4350c9 450 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 320 3.7E-77 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS13120 753f4b349a8a16fd7ab5988c2a4350c9 450 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 285 292 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS13120 753f4b349a8a16fd7ab5988c2a4350c9 450 SMART SM00878 335 440 1.6E-57 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RD1_RS13120 753f4b349a8a16fd7ab5988c2a4350c9 450 SUPERFAMILY SSF51246 330 444 1.26E-39 T 23-04-2016 IPR011054 Rudiment single hybrid motif RD1_RS13120 753f4b349a8a16fd7ab5988c2a4350c9 450 Gene3D G3DSA:3.30.470.20 204 444 1.2E-90 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS13120 753f4b349a8a16fd7ab5988c2a4350c9 450 SUPERFAMILY SSF52440 1 113 7.19E-47 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS13120 753f4b349a8a16fd7ab5988c2a4350c9 450 Gene3D G3DSA:3.30.1490.20 130 202 7.8E-30 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS13120 753f4b349a8a16fd7ab5988c2a4350c9 450 Gene3D G3DSA:3.40.50.20 1 129 5.5E-52 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS13120 753f4b349a8a16fd7ab5988c2a4350c9 450 Pfam PF02785 Biotin carboxylase C-terminal domain 335 441 3.5E-34 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RD1_RS13120 753f4b349a8a16fd7ab5988c2a4350c9 450 PANTHER PTHR18866 1 444 3.2E-278 T 23-04-2016 RD1_RS13120 753f4b349a8a16fd7ab5988c2a4350c9 450 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 443 1.2E-212 T 23-04-2016 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 RD1_RS13120 753f4b349a8a16fd7ab5988c2a4350c9 450 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS13120 753f4b349a8a16fd7ab5988c2a4350c9 450 SUPERFAMILY SSF56059 83 341 1.85E-67 T 23-04-2016 RD1_RS13120 753f4b349a8a16fd7ab5988c2a4350c9 450 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 3.3E-43 T 23-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RD1_RS11520 99b2e701e80b299b4639e316193df3fc 334 PANTHER PTHR11082 9 315 8.2E-136 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RD1_RS11520 99b2e701e80b299b4639e316193df3fc 334 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 90 108 - T 23-04-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RD1_RS11520 99b2e701e80b299b4639e316193df3fc 334 SUPERFAMILY SSF51395 8 303 1.94E-70 T 23-04-2016 RD1_RS11520 99b2e701e80b299b4639e316193df3fc 334 Gene3D G3DSA:3.20.20.70 7 238 8.9E-71 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS11520 99b2e701e80b299b4639e316193df3fc 334 Pfam PF01207 Dihydrouridine synthase (Dus) 11 311 1.2E-75 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RD1_RS11520 99b2e701e80b299b4639e316193df3fc 334 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 1 325 47.221 T 23-04-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 RD1_RS11520 99b2e701e80b299b4639e316193df3fc 334 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 8 323 1.7E-121 T 23-04-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 RD1_RS11520 99b2e701e80b299b4639e316193df3fc 334 PANTHER PTHR11082:SF29 9 315 8.2E-136 T 23-04-2016 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 Gene3D G3DSA:3.20.20.60 431 728 1.0E-83 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 Gene3D G3DSA:1.10.274.10 200 309 8.5E-30 T 23-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 427 715 2.0E-83 T 23-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 Pfam PF05524 PEP-utilising enzyme, N-terminal 185 302 3.4E-19 T 23-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 Gene3D G3DSA:3.50.30.10 310 430 7.4E-30 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 SUPERFAMILY SSF47831 200 319 3.79E-26 T 23-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 Pfam PF13185 GAF domain 28 158 6.7E-11 T 23-04-2016 IPR003018 GAF domain GO:0005515 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 622 637 2.4E-14 T 23-04-2016 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 468 487 2.4E-14 T 23-04-2016 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 639 654 2.4E-14 T 23-04-2016 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 675 687 2.4E-14 T 23-04-2016 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 SUPERFAMILY SSF51621 425 722 2.88E-86 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 Gene3D G3DSA:3.30.450.40 10 160 7.2E-39 T 23-04-2016 IPR029016 GAF domain-like RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 SUPERFAMILY SSF52009 301 419 7.59E-28 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 PANTHER PTHR22931:SF23 213 725 5.9E-154 T 23-04-2016 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 SMART SM00065 25 171 2.6E-9 T 23-04-2016 IPR003018 GAF domain GO:0005515 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 Pfam PF00391 PEP-utilising enzyme, mobile domain 328 400 7.5E-18 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 SUPERFAMILY SSF55781 11 158 4.36E-24 T 23-04-2016 IPR029016 GAF domain-like RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 212 719 2.7E-115 T 23-04-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 RD1_RS09970 07cffe66f961ea9393b73ead812fa7cb 747 PANTHER PTHR22931 213 725 5.9E-154 T 23-04-2016 RD1_RS09615 2b9e7d54efdbefdab5de3a0512d46500 232 PIRSF PIRSF000851 1 232 7.4E-93 T 23-04-2016 IPR026027 Phosphatidylcholine synthase Pcs KEGG: 00564+2.7.8.24|MetaCyc: PWY-6826 RD1_RS09615 2b9e7d54efdbefdab5de3a0512d46500 232 Pfam PF01066 CDP-alcohol phosphatidyltransferase 11 76 2.4E-7 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RD1_RS16945 2959e13abf17e398bae91e8250c56e98 419 PANTHER PTHR19328:SF33 1 415 3.9E-62 T 23-04-2016 RD1_RS16945 2959e13abf17e398bae91e8250c56e98 419 Pfam PF07995 Glucose / Sorbosone dehydrogenase 171 337 1.4E-10 T 23-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 RD1_RS16945 2959e13abf17e398bae91e8250c56e98 419 PANTHER PTHR19328 1 415 3.9E-62 T 23-04-2016 RD1_RS16945 2959e13abf17e398bae91e8250c56e98 419 Gene3D G3DSA:2.120.10.30 58 416 2.4E-47 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RD1_RS16945 2959e13abf17e398bae91e8250c56e98 419 SUPERFAMILY SSF50952 55 414 3.53E-30 T 23-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 Gene3D G3DSA:3.40.50.720 3 236 4.0E-77 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 235 1.6E-57 T 23-04-2016 RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 5.4E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 5.4E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 5.4E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 201 221 5.4E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 5.4E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 5.4E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 PANTHER PTHR24322 147 179 1.4E-64 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 PANTHER PTHR24322 7 131 1.4E-64 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 SUPERFAMILY SSF51735 3 236 1.76E-72 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 7.0E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 7.0E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 7.0E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 PANTHER PTHR24322:SF559 147 179 1.4E-64 T 23-04-2016 RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 PANTHER PTHR24322:SF559 7 131 1.4E-64 T 23-04-2016 RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 178 0.0016 T 23-04-2016 RD1_RS15585 c24cdbc4dc8e9183798c9818ead1394d 240 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 3 239 2.5E-103 T 23-04-2016 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|UniPathway: UPA00917 RD1_RS09450 8324c64bd2a2b02d50971b3c11dc138f 520 SUPERFAMILY SSF53067 160 330 6.73E-37 T 23-04-2016 RD1_RS09450 8324c64bd2a2b02d50971b3c11dc138f 520 SUPERFAMILY SSF109604 341 491 1.07E-13 T 23-04-2016 RD1_RS09450 8324c64bd2a2b02d50971b3c11dc138f 520 Pfam PF02541 Ppx/GppA phosphatase family 53 328 5.1E-39 T 23-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 RD1_RS09450 8324c64bd2a2b02d50971b3c11dc138f 520 Gene3D G3DSA:3.30.420.150 161 328 1.3E-24 T 23-04-2016 RD1_RS09450 8324c64bd2a2b02d50971b3c11dc138f 520 SUPERFAMILY SSF53067 36 157 1.02E-33 T 23-04-2016 RD1_RS09450 8324c64bd2a2b02d50971b3c11dc138f 520 Gene3D G3DSA:3.30.420.40 35 154 1.2E-35 T 23-04-2016 RD1_RS09450 8324c64bd2a2b02d50971b3c11dc138f 520 PANTHER PTHR30005 11 464 7.8E-64 T 23-04-2016 RD1_RS13605 fe934fad6321f9b4436286f200428d4e 120 PANTHER PTHR13696:SF62 6 117 5.1E-23 T 23-04-2016 RD1_RS13605 fe934fad6321f9b4436286f200428d4e 120 TIGRFAM TIGR02945 SUF_assoc: FeS assembly SUF system protein 23 120 6.6E-46 T 23-04-2016 IPR014291 SUF system FeS cluster assembly associated RD1_RS13605 fe934fad6321f9b4436286f200428d4e 120 SUPERFAMILY SSF117916 25 118 6.54E-31 T 23-04-2016 RD1_RS13605 fe934fad6321f9b4436286f200428d4e 120 Pfam PF01883 Domain of unknown function DUF59 25 97 9.1E-19 T 23-04-2016 IPR002744 Domain of unknown function DUF59 RD1_RS13605 fe934fad6321f9b4436286f200428d4e 120 PANTHER PTHR13696 6 117 5.1E-23 T 23-04-2016 RD1_RS00450 1e460de04994a5ce596f873fd02cdd6f 330 Pfam PF03576 Peptidase family S58 7 318 1.7E-63 T 23-04-2016 IPR005321 Peptidase S58, DmpA RD1_RS00450 1e460de04994a5ce596f873fd02cdd6f 330 PANTHER PTHR36512:SF3 3 318 1.8E-92 T 23-04-2016 RD1_RS00450 1e460de04994a5ce596f873fd02cdd6f 330 SUPERFAMILY SSF56266 2 318 7.59E-72 T 23-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RD1_RS00450 1e460de04994a5ce596f873fd02cdd6f 330 PANTHER PTHR36512 3 318 1.8E-92 T 23-04-2016 RD1_RS00450 1e460de04994a5ce596f873fd02cdd6f 330 Gene3D G3DSA:3.60.70.12 1 318 2.1E-86 T 23-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RD1_RS12630 f3003e484720b1aef865fc55c5e872c6 821 Gene3D G3DSA:2.30.120.10 339 410 9.2E-19 T 23-04-2016 RD1_RS12630 f3003e484720b1aef865fc55c5e872c6 821 Gene3D G3DSA:1.10.439.10 34 206 1.8E-55 T 23-04-2016 IPR023343 Penicillin amidase type, domain1 GO:0016811 RD1_RS12630 f3003e484720b1aef865fc55c5e872c6 821 SUPERFAMILY SSF56235 46 819 9.0E-222 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS12630 f3003e484720b1aef865fc55c5e872c6 821 Gene3D G3DSA:3.60.20.10 421 615 6.8E-82 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS12630 f3003e484720b1aef865fc55c5e872c6 821 Gene3D G3DSA:3.60.20.10 209 338 6.8E-82 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS12630 f3003e484720b1aef865fc55c5e872c6 821 PANTHER PTHR34218:SF2 1 821 3.7E-164 T 23-04-2016 RD1_RS12630 f3003e484720b1aef865fc55c5e872c6 821 Pfam PF01804 Penicillin amidase 49 805 2.4E-189 T 23-04-2016 IPR002692 Penicillin/cephalosporin acylase GO:0016787|GO:0017000 RD1_RS12630 f3003e484720b1aef865fc55c5e872c6 821 PIRSF PIRSF001227 7 816 2.2E-150 T 23-04-2016 IPR014395 Penicillin acylase GO:0016811 RD1_RS12630 f3003e484720b1aef865fc55c5e872c6 821 PANTHER PTHR34218 1 821 3.7E-164 T 23-04-2016 RD1_RS03035 0c215699aedbafcfc8707e4645df07b9 438 Gene3D G3DSA:3.30.830.10 23 237 3.8E-50 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RD1_RS03035 0c215699aedbafcfc8707e4645df07b9 438 SUPERFAMILY SSF63411 247 431 1.2E-44 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RD1_RS03035 0c215699aedbafcfc8707e4645df07b9 438 PANTHER PTHR11851:SF140 31 427 3.8E-64 T 23-04-2016 RD1_RS03035 0c215699aedbafcfc8707e4645df07b9 438 Pfam PF05193 Peptidase M16 inactive domain 187 360 2.7E-27 T 23-04-2016 IPR007863 Peptidase M16, C-terminal RD1_RS03035 0c215699aedbafcfc8707e4645df07b9 438 PANTHER PTHR11851 31 427 3.8E-64 T 23-04-2016 RD1_RS03035 0c215699aedbafcfc8707e4645df07b9 438 Gene3D G3DSA:3.30.830.10 250 428 1.7E-37 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RD1_RS03035 0c215699aedbafcfc8707e4645df07b9 438 SUPERFAMILY SSF63411 21 226 2.39E-45 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RD1_RS01350 b8d148ce5ee0de99a82bafd16ded5c29 448 SUPERFAMILY SSF111283 3 447 6.41E-121 T 23-04-2016 RD1_RS01350 b8d148ce5ee0de99a82bafd16ded5c29 448 PANTHER PTHR30624 1 447 6.7E-115 T 23-04-2016 RD1_RS01350 b8d148ce5ee0de99a82bafd16ded5c29 448 PANTHER PTHR30624:SF1 1 447 6.7E-115 T 23-04-2016 RD1_RS01350 b8d148ce5ee0de99a82bafd16ded5c29 448 Pfam PF01523 Putative modulator of DNA gyrase 24 317 1.9E-49 T 23-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RD1_RS06385 07b7bc9133c2c9e8e4b74010b0e0b145 130 Gene3D G3DSA:3.40.50.510 2 126 1.0E-32 T 23-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RD1_RS06385 07b7bc9133c2c9e8e4b74010b0e0b145 130 Pfam PF03610 PTS system fructose IIA component 3 110 3.1E-18 T 23-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RD1_RS06385 07b7bc9133c2c9e8e4b74010b0e0b145 130 SUPERFAMILY SSF53062 2 126 4.84E-31 T 23-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RD1_RS06385 07b7bc9133c2c9e8e4b74010b0e0b145 130 PANTHER PTHR33799:SF1 2 124 9.5E-28 T 23-04-2016 RD1_RS06385 07b7bc9133c2c9e8e4b74010b0e0b145 130 PANTHER PTHR33799 2 124 9.5E-28 T 23-04-2016 RD1_RS12085 c512cea20e64f61a07290da858d9f532 517 Pfam PF05872 Bacterial protein of unknown function (DUF853) 15 513 8.4E-223 T 23-04-2016 IPR033186 Helicase HerA-like C-terminal RD1_RS12085 c512cea20e64f61a07290da858d9f532 517 SUPERFAMILY SSF52540 98 390 2.86E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12085 c512cea20e64f61a07290da858d9f532 517 SUPERFAMILY SSF52540 19 70 2.86E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12085 c512cea20e64f61a07290da858d9f532 517 Gene3D G3DSA:3.40.50.300 18 115 9.3E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12085 c512cea20e64f61a07290da858d9f532 517 Gene3D G3DSA:3.40.50.300 211 388 9.3E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12085 c512cea20e64f61a07290da858d9f532 517 PANTHER PTHR30121:SF3 24 448 2.3E-156 T 23-04-2016 RD1_RS12085 c512cea20e64f61a07290da858d9f532 517 PANTHER PTHR30121 24 448 2.3E-156 T 23-04-2016 RD1_RS11840 f10e2dc7a78e084a3e548fd8a433c49e 467 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 257 272 - T 23-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS11840 f10e2dc7a78e084a3e548fd8a433c49e 467 SUPERFAMILY SSF55931 101 466 3.24E-131 T 23-04-2016 RD1_RS11840 f10e2dc7a78e084a3e548fd8a433c49e 467 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 94 2.0E-28 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS11840 f10e2dc7a78e084a3e548fd8a433c49e 467 PANTHER PTHR20852 159 467 1.1E-244 T 23-04-2016 RD1_RS11840 f10e2dc7a78e084a3e548fd8a433c49e 467 PANTHER PTHR20852 3 137 1.1E-244 T 23-04-2016 RD1_RS11840 f10e2dc7a78e084a3e548fd8a433c49e 467 ProSitePatterns PS00180 Glutamine synthetase signature 1. 49 67 - T 23-04-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS11840 f10e2dc7a78e084a3e548fd8a433c49e 467 SUPERFAMILY SSF54368 2 100 4.97E-35 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS11840 f10e2dc7a78e084a3e548fd8a433c49e 467 Gene3D G3DSA:3.10.20.70 3 104 1.0E-37 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS11840 f10e2dc7a78e084a3e548fd8a433c49e 467 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 384 396 - T 23-04-2016 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS11840 f10e2dc7a78e084a3e548fd8a433c49e 467 SMART SM01230 101 377 1.1E-135 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS11840 f10e2dc7a78e084a3e548fd8a433c49e 467 PANTHER PTHR20852:SF15 159 467 1.1E-244 T 23-04-2016 RD1_RS11840 f10e2dc7a78e084a3e548fd8a433c49e 467 PANTHER PTHR20852:SF15 3 137 1.1E-244 T 23-04-2016 RD1_RS11840 f10e2dc7a78e084a3e548fd8a433c49e 467 Pfam PF00120 Glutamine synthetase, catalytic domain 101 464 1.4E-131 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS11840 f10e2dc7a78e084a3e548fd8a433c49e 467 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 466 2.5E-197 T 23-04-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS11840 f10e2dc7a78e084a3e548fd8a433c49e 467 Gene3D G3DSA:3.30.590.10 105 454 2.1E-129 T 23-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 RD1_RS16590 57f31d0c119caf5dba0247e0081567dd 434 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 22 425 2.0E-114 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS16590 57f31d0c119caf5dba0247e0081567dd 434 PANTHER PTHR33362 7 429 3.6E-129 T 23-04-2016 RD1_RS16590 57f31d0c119caf5dba0247e0081567dd 434 PIRSF PIRSF006066 5 431 4.6E-140 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS16590 57f31d0c119caf5dba0247e0081567dd 434 PANTHER PTHR33362:SF2 7 429 3.6E-129 T 23-04-2016 RD1_RS16590 57f31d0c119caf5dba0247e0081567dd 434 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 12 419 4.3E-101 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS15410 cdba644ce7e659e7b075ab3a519410d9 468 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 11 465 40.442 T 23-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15410 cdba644ce7e659e7b075ab3a519410d9 468 Gene3D G3DSA:3.40.50.720 13 99 2.7E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15410 cdba644ce7e659e7b075ab3a519410d9 468 Pfam PF08245 Mur ligase middle domain 116 298 2.9E-27 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15410 cdba644ce7e659e7b075ab3a519410d9 468 SUPERFAMILY SSF53623 97 316 1.44E-67 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15410 cdba644ce7e659e7b075ab3a519410d9 468 PANTHER PTHR23135 6 454 4.5E-192 T 23-04-2016 RD1_RS15410 cdba644ce7e659e7b075ab3a519410d9 468 Gene3D G3DSA:3.90.190.20 320 464 1.8E-48 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RD1_RS15410 cdba644ce7e659e7b075ab3a519410d9 468 SUPERFAMILY SSF53244 317 461 4.27E-45 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RD1_RS15410 cdba644ce7e659e7b075ab3a519410d9 468 SUPERFAMILY SSF51984 13 98 1.26E-27 T 23-04-2016 RD1_RS15410 cdba644ce7e659e7b075ab3a519410d9 468 Pfam PF01225 Mur ligase family, catalytic domain 14 110 4.4E-29 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15410 cdba644ce7e659e7b075ab3a519410d9 468 Pfam PF02875 Mur ligase family, glutamate ligase domain 318 403 2.5E-19 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RD1_RS15410 cdba644ce7e659e7b075ab3a519410d9 468 Gene3D G3DSA:3.40.1190.10 100 319 5.0E-80 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15410 cdba644ce7e659e7b075ab3a519410d9 468 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 14 457 5.2E-155 T 23-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15410 cdba644ce7e659e7b075ab3a519410d9 468 PANTHER PTHR23135:SF5 6 454 4.5E-192 T 23-04-2016 RD1_RS05860 82c61eb0db9a147175fe4ebce70fa8b8 537 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 265 320 - T 23-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS05860 82c61eb0db9a147175fe4ebce70fa8b8 537 PANTHER PTHR10422:SF21 64 524 7.0E-256 T 23-04-2016 RD1_RS05860 82c61eb0db9a147175fe4ebce70fa8b8 537 PANTHER PTHR10422 64 524 7.0E-256 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS05860 82c61eb0db9a147175fe4ebce70fa8b8 537 Gene3D G3DSA:1.20.210.10 71 524 5.5E-66 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS05860 82c61eb0db9a147175fe4ebce70fa8b8 537 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 67 527 1.1E-246 T 23-04-2016 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS05860 82c61eb0db9a147175fe4ebce70fa8b8 537 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 71 505 2.6E-112 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS05860 82c61eb0db9a147175fe4ebce70fa8b8 537 SUPERFAMILY SSF81442 70 526 6.28E-115 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 33 658 4.8E-200 T 23-04-2016 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 PANTHER PTHR24031 298 596 2.3E-109 T 23-04-2016 RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 PANTHER PTHR24031 620 667 2.3E-109 T 23-04-2016 RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 PANTHER PTHR24031 255 281 2.3E-109 T 23-04-2016 RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 SUPERFAMILY SSF50249 9 178 9.94E-26 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 Gene3D G3DSA:2.40.50.140 67 143 4.2E-8 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 Gene3D G3DSA:3.40.50.300 256 448 7.1E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 SUPERFAMILY SSF52540 446 648 1.24E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 Gene3D G3DSA:3.40.50.300 449 632 2.1E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 SUPERFAMILY SSF52540 182 448 1.65E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 PANTHER PTHR24031:SF249 298 596 2.3E-109 T 23-04-2016 RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 PANTHER PTHR24031:SF249 620 667 2.3E-109 T 23-04-2016 RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 PANTHER PTHR24031:SF249 255 281 2.3E-109 T 23-04-2016 RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 SMART SM00487 264 454 2.4E-31 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 Pfam PF00271 Helicase conserved C-terminal domain 470 582 3.3E-16 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 SMART SM00490 503 583 2.8E-17 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 SMART SM00490 334 402 1.3 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 Pfam PF00270 DEAD/DEAH box helicase 289 426 2.1E-17 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RD1_RS11985 842c3c6e7e715cda5c9b1e967bf6f747 696 Pfam PF17191 RecG wedge domain 18 174 7.0E-8 T 23-04-2016 IPR033454 RecG, wedge domain RD1_RS08175 6c911cccaaf5ec6818fd5f96bc617c23 186 SUPERFAMILY SSF102405 3 178 3.66E-60 T 23-04-2016 RD1_RS08175 6c911cccaaf5ec6818fd5f96bc617c23 186 Pfam PF03641 Possible lysine decarboxylase 48 173 8.6E-37 T 23-04-2016 IPR031100 LOG family RD1_RS08175 6c911cccaaf5ec6818fd5f96bc617c23 186 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 4 160 7.9E-54 T 23-04-2016 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG RD1_RS08175 6c911cccaaf5ec6818fd5f96bc617c23 186 PANTHER PTHR31223:SF0 4 181 1.8E-67 T 23-04-2016 RD1_RS08175 6c911cccaaf5ec6818fd5f96bc617c23 186 Gene3D G3DSA:3.40.50.450 3 178 6.8E-60 T 23-04-2016 RD1_RS08175 6c911cccaaf5ec6818fd5f96bc617c23 186 PANTHER PTHR31223 4 181 1.8E-67 T 23-04-2016 RD1_RS11030 a632c4e75c9dcb3292836318615450db 209 PANTHER PTHR23416:SF61 51 81 2.5E-39 T 23-04-2016 RD1_RS11030 a632c4e75c9dcb3292836318615450db 209 Gene3D G3DSA:2.160.10.10 20 203 3.5E-46 T 23-04-2016 RD1_RS11030 a632c4e75c9dcb3292836318615450db 209 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 119 147 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RD1_RS11030 a632c4e75c9dcb3292836318615450db 209 TIGRFAM TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family 10 206 1.2E-88 T 23-04-2016 IPR017694 Phosphonate metabolim protein, transferase hexapeptide repeat family RD1_RS11030 a632c4e75c9dcb3292836318615450db 209 SUPERFAMILY SSF51161 16 200 4.57E-39 T 23-04-2016 IPR011004 Trimeric LpxA-like RD1_RS11030 a632c4e75c9dcb3292836318615450db 209 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 111 145 5.3E-8 T 23-04-2016 IPR001451 Hexapeptide repeat RD1_RS11030 a632c4e75c9dcb3292836318615450db 209 PANTHER PTHR23416 51 81 2.5E-39 T 23-04-2016 RD1_RS11030 a632c4e75c9dcb3292836318615450db 209 PANTHER PTHR23416 101 206 2.5E-39 T 23-04-2016 RD1_RS11030 a632c4e75c9dcb3292836318615450db 209 PANTHER PTHR23416:SF61 101 206 2.5E-39 T 23-04-2016 RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 8 683 1.4E-298 T 23-04-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 Gene3D G3DSA:2.60.40.10 8 162 2.1E-48 T 23-04-2016 IPR013783 Immunoglobulin-like fold RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 SUPERFAMILY SSF51445 503 576 1.42E-127 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 SUPERFAMILY SSF51445 143 474 1.42E-127 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 SMART SM00642 186 569 1.0E-8 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 PANTHER PTHR10357 597 660 1.0E-284 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 PANTHER PTHR10357 6 580 1.0E-284 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 12 99 5.6E-17 T 23-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 SUPERFAMILY SSF51011 590 671 2.73E-12 T 23-04-2016 RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 PANTHER PTHR10357:SF74 597 660 1.0E-284 T 23-04-2016 RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 PANTHER PTHR10357:SF74 6 580 1.0E-284 T 23-04-2016 RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 Pfam PF00128 Alpha amylase, catalytic domain 309 533 5.8E-5 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 Pfam PF00128 Alpha amylase, catalytic domain 195 278 1.3E-7 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 Gene3D G3DSA:3.20.20.80 163 577 2.1E-115 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 SUPERFAMILY SSF81296 8 145 3.64E-42 T 23-04-2016 IPR014756 Immunoglobulin E-set RD1_RS13225 f54414f5b54c44e52d69b427cdd29e45 698 Gene3D G3DSA:2.60.40.1180 589 674 2.6E-14 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta RD1_RS12815 e80672051dbbf84439ac9e6e19003a63 386 PANTHER PTHR13789 4 380 3.3E-74 T 23-04-2016 RD1_RS12815 e80672051dbbf84439ac9e6e19003a63 386 Gene3D G3DSA:3.50.50.60 6 173 4.5E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS12815 e80672051dbbf84439ac9e6e19003a63 386 Gene3D G3DSA:3.50.50.60 265 339 4.5E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS12815 e80672051dbbf84439ac9e6e19003a63 386 Pfam PF01494 FAD binding domain 5 335 1.7E-28 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 RD1_RS12815 e80672051dbbf84439ac9e6e19003a63 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.9E-17 T 23-04-2016 RD1_RS12815 e80672051dbbf84439ac9e6e19003a63 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 1.9E-17 T 23-04-2016 RD1_RS12815 e80672051dbbf84439ac9e6e19003a63 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 1.9E-17 T 23-04-2016 RD1_RS12815 e80672051dbbf84439ac9e6e19003a63 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 147 162 1.9E-17 T 23-04-2016 RD1_RS12815 e80672051dbbf84439ac9e6e19003a63 386 SUPERFAMILY SSF51905 264 360 4.46E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS12815 e80672051dbbf84439ac9e6e19003a63 386 SUPERFAMILY SSF51905 6 168 4.46E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS12815 e80672051dbbf84439ac9e6e19003a63 386 SUPERFAMILY SSF54373 172 267 5.3E-15 T 23-04-2016 RD1_RS12815 e80672051dbbf84439ac9e6e19003a63 386 PANTHER PTHR13789:SF186 4 380 3.3E-74 T 23-04-2016 RD1_RS14005 82414cdf57b673c5463861f2e335997e 229 SUPERFAMILY SSF81338 2 226 7.59E-63 T 23-04-2016 IPR023271 Aquaporin-like RD1_RS14005 82414cdf57b673c5463861f2e335997e 229 Pfam PF00230 Major intrinsic protein 2 221 9.5E-48 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 RD1_RS14005 82414cdf57b673c5463861f2e335997e 229 TIGRFAM TIGR00861 MIP: MIP family channel proteins 7 222 3.5E-55 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 RD1_RS14005 82414cdf57b673c5463861f2e335997e 229 ProSitePatterns PS00221 MIP family signature. 61 69 - T 23-04-2016 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 RD1_RS14005 82414cdf57b673c5463861f2e335997e 229 PANTHER PTHR19139 1 225 1.3E-64 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 RD1_RS14005 82414cdf57b673c5463861f2e335997e 229 PANTHER PTHR19139:SF103 1 225 1.3E-64 T 23-04-2016 RD1_RS14005 82414cdf57b673c5463861f2e335997e 229 Gene3D G3DSA:1.20.1080.10 2 227 1.1E-65 T 23-04-2016 IPR023271 Aquaporin-like RD1_RS14005 82414cdf57b673c5463861f2e335997e 229 PRINTS PR00783 Major intrinsic protein family signature 43 67 1.1E-48 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 RD1_RS14005 82414cdf57b673c5463861f2e335997e 229 PRINTS PR00783 Major intrinsic protein family signature 3 22 1.1E-48 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 RD1_RS14005 82414cdf57b673c5463861f2e335997e 229 PRINTS PR00783 Major intrinsic protein family signature 166 188 1.1E-48 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 RD1_RS14005 82414cdf57b673c5463861f2e335997e 229 PRINTS PR00783 Major intrinsic protein family signature 205 225 1.1E-48 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 RD1_RS14005 82414cdf57b673c5463861f2e335997e 229 PRINTS PR00783 Major intrinsic protein family signature 80 99 1.1E-48 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 RD1_RS14005 82414cdf57b673c5463861f2e335997e 229 PRINTS PR00783 Major intrinsic protein family signature 136 154 1.1E-48 T 23-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 RD1_RS03395 b5eca35b9160efda1867629deb91856b 331 PANTHER PTHR33376:SF2 4 309 5.6E-61 T 23-04-2016 RD1_RS03395 b5eca35b9160efda1867629deb91856b 331 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 47 309 2.0E-55 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS03395 b5eca35b9160efda1867629deb91856b 331 PANTHER PTHR33376 4 309 5.6E-61 T 23-04-2016 RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 598 2.4E-288 T 23-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 PRINTS PR00301 70kDa heat shock protein signature 196 206 2.3E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 PRINTS PR00301 70kDa heat shock protein signature 360 380 2.3E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 PRINTS PR00301 70kDa heat shock protein signature 464 480 2.3E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 PRINTS PR00301 70kDa heat shock protein signature 3 16 2.3E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 PRINTS PR00301 70kDa heat shock protein signature 137 157 2.3E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 PRINTS PR00301 70kDa heat shock protein signature 383 402 2.3E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 PRINTS PR00301 70kDa heat shock protein signature 31 43 2.3E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 PRINTS PR00301 70kDa heat shock protein signature 53 61 2.3E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 PRINTS PR00301 70kDa heat shock protein signature 329 345 2.3E-80 T 23-04-2016 IPR013126 Heat shock protein 70 family RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 PANTHER PTHR19375:SF173 2 635 0.0 T 23-04-2016 RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 Gene3D G3DSA:3.30.420.40 191 223 2.0E-37 T 23-04-2016 RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 Gene3D G3DSA:3.30.420.40 314 356 2.0E-37 T 23-04-2016 RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 Gene3D G3DSA:3.30.420.40 118 190 1.2E-66 T 23-04-2016 RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 Gene3D G3DSA:3.30.420.40 4 52 1.2E-66 T 23-04-2016 RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 Pfam PF00012 Hsp70 protein 4 598 2.2E-268 T 23-04-2016 IPR013126 Heat shock protein 70 family RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 SUPERFAMILY SSF100920 379 535 3.14E-63 T 23-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 Gene3D G3DSA:1.20.1270.10 528 598 8.6E-25 T 23-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 SUPERFAMILY SSF53067 1 182 5.61E-67 T 23-04-2016 RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 Gene3D G3DSA:3.30.30.30 53 108 3.0E-27 T 23-04-2016 RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 SUPERFAMILY SSF53067 185 377 3.09E-64 T 23-04-2016 RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 Gene3D G3DSA:2.60.34.10 385 527 1.6E-72 T 23-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 SUPERFAMILY SSF100934 502 601 5.89E-22 T 23-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 190 203 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 630 36.793 T 23-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 PANTHER PTHR19375 2 635 0.0 T 23-04-2016 RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 Gene3D G3DSA:3.90.640.10 224 309 3.1E-29 T 23-04-2016 RD1_RS01770 23071e3fb68c480d6d285950e0e2a51e 636 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site RD1_RS06170 6224cb0f07933b373481b5e188e90072 175 Gene3D G3DSA:3.90.45.10 7 171 1.3E-61 T 23-04-2016 IPR023635 Peptide deformylase RD1_RS06170 6224cb0f07933b373481b5e188e90072 175 PANTHER PTHR10458 8 174 6.6E-70 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RD1_RS06170 6224cb0f07933b373481b5e188e90072 175 PIRSF PIRSF004749 1 175 2.2E-53 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RD1_RS06170 6224cb0f07933b373481b5e188e90072 175 Pfam PF01327 Polypeptide deformylase 7 158 6.5E-49 T 23-04-2016 IPR023635 Peptide deformylase RD1_RS06170 6224cb0f07933b373481b5e188e90072 175 SUPERFAMILY SSF56420 4 170 1.7E-60 T 23-04-2016 IPR023635 Peptide deformylase RD1_RS06170 6224cb0f07933b373481b5e188e90072 175 PANTHER PTHR10458:SF10 8 174 6.6E-70 T 23-04-2016 RD1_RS06170 6224cb0f07933b373481b5e188e90072 175 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 7 165 3.3E-50 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RD1_RS06170 6224cb0f07933b373481b5e188e90072 175 Hamap MF_00163 Peptide deformylase [def]. 4 168 30.029 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RD1_RS06170 6224cb0f07933b373481b5e188e90072 175 PRINTS PR01576 Peptide deformylase signature 95 106 2.9E-33 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RD1_RS06170 6224cb0f07933b373481b5e188e90072 175 PRINTS PR01576 Peptide deformylase signature 107 125 2.9E-33 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RD1_RS06170 6224cb0f07933b373481b5e188e90072 175 PRINTS PR01576 Peptide deformylase signature 35 64 2.9E-33 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RD1_RS06170 6224cb0f07933b373481b5e188e90072 175 PRINTS PR01576 Peptide deformylase signature 126 155 2.9E-33 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RD1_RS08810 f7f6140e0e106d590c89415742c53467 547 Pfam PF00117 Glutamine amidotransferase class-I 301 538 1.6E-56 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RD1_RS08810 f7f6140e0e106d590c89415742c53467 547 PANTHER PTHR11550 1 540 2.7E-303 T 23-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RD1_RS08810 f7f6140e0e106d590c89415742c53467 547 Hamap MF_01227 CTP synthase [pyrG]. 2 544 49.146 T 23-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RD1_RS08810 f7f6140e0e106d590c89415742c53467 547 SUPERFAMILY SSF52317 289 543 8.46E-78 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS08810 f7f6140e0e106d590c89415742c53467 547 Gene3D G3DSA:3.40.50.880 288 544 1.6E-94 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS08810 f7f6140e0e106d590c89415742c53467 547 Pfam PF06418 CTP synthase N-terminus 3 264 9.6E-118 T 23-04-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RD1_RS08810 f7f6140e0e106d590c89415742c53467 547 Gene3D G3DSA:3.40.50.300 1 284 8.3E-123 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08810 f7f6140e0e106d590c89415742c53467 547 TIGRFAM TIGR00337 PyrG: CTP synthase 2 539 1.0E-224 T 23-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RD1_RS08810 f7f6140e0e106d590c89415742c53467 547 SUPERFAMILY SSF52540 1 266 3.85E-116 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17880 4735dd2ba56d06de388d554aad586b69 410 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 91 105 - T 23-04-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RD1_RS17880 4735dd2ba56d06de388d554aad586b69 410 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 17 401 3.6E-197 T 23-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RD1_RS17880 4735dd2ba56d06de388d554aad586b69 410 Gene3D G3DSA:3.40.50.1100 109 187 1.4E-22 T 23-04-2016 RD1_RS17880 4735dd2ba56d06de388d554aad586b69 410 PIRSF PIRSF001413 8 408 7.5E-159 T 23-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RD1_RS17880 4735dd2ba56d06de388d554aad586b69 410 PANTHER PTHR10314 17 402 2.2E-232 T 23-04-2016 RD1_RS17880 4735dd2ba56d06de388d554aad586b69 410 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 63 389 1.5E-43 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS17880 4735dd2ba56d06de388d554aad586b69 410 SUPERFAMILY SSF53686 13 400 6.81E-144 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS17880 4735dd2ba56d06de388d554aad586b69 410 Gene3D G3DSA:3.40.50.1100 188 403 2.6E-88 T 23-04-2016 RD1_RS17880 4735dd2ba56d06de388d554aad586b69 410 PANTHER PTHR10314:SF3 17 402 2.2E-232 T 23-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RD1_RS17880 4735dd2ba56d06de388d554aad586b69 410 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 12 402 51.366 T 23-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RD1_RS12260 a9949db8bbb631750ef9160c10cf2142 89 PRINTS PR00063 Ribosomal protein L27 signature 54 78 5.7E-33 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS12260 a9949db8bbb631750ef9160c10cf2142 89 PRINTS PR00063 Ribosomal protein L27 signature 29 53 5.7E-33 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS12260 a9949db8bbb631750ef9160c10cf2142 89 PRINTS PR00063 Ribosomal protein L27 signature 4 28 5.7E-33 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS12260 a9949db8bbb631750ef9160c10cf2142 89 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 85 1.0E-15 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS12260 a9949db8bbb631750ef9160c10cf2142 89 SUPERFAMILY SSF110324 2 83 2.88E-33 T 23-04-2016 RD1_RS12260 a9949db8bbb631750ef9160c10cf2142 89 Pfam PF01016 Ribosomal L27 protein 2 81 3.3E-37 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS12260 a9949db8bbb631750ef9160c10cf2142 89 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 84 26.771 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS12260 a9949db8bbb631750ef9160c10cf2142 89 Gene3D G3DSA:2.40.50.100 20 84 1.3E-29 T 23-04-2016 RD1_RS12260 a9949db8bbb631750ef9160c10cf2142 89 PANTHER PTHR15893 1 86 4.7E-49 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS12260 a9949db8bbb631750ef9160c10cf2142 89 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 81 1.0E-35 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS14120 fd8e07c8bfdbe3514d66337506bf0ca1 524 Pfam PF00589 Phage integrase family 334 506 4.3E-13 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RD1_RS14120 fd8e07c8bfdbe3514d66337506bf0ca1 524 PANTHER PTHR30349 279 505 1.5E-18 T 23-04-2016 RD1_RS14120 fd8e07c8bfdbe3514d66337506bf0ca1 524 PANTHER PTHR30349 201 253 1.5E-18 T 23-04-2016 RD1_RS14120 fd8e07c8bfdbe3514d66337506bf0ca1 524 Gene3D G3DSA:1.10.443.10 327 507 2.8E-20 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RD1_RS14120 fd8e07c8bfdbe3514d66337506bf0ca1 524 SUPERFAMILY SSF56349 278 507 1.29E-37 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RD1_RS14120 fd8e07c8bfdbe3514d66337506bf0ca1 524 SUPERFAMILY SSF56349 196 251 1.29E-37 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RD1_RS14120 fd8e07c8bfdbe3514d66337506bf0ca1 524 PANTHER PTHR30349:SF20 279 505 1.5E-18 T 23-04-2016 RD1_RS14120 fd8e07c8bfdbe3514d66337506bf0ca1 524 PANTHER PTHR30349:SF20 201 253 1.5E-18 T 23-04-2016 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 Gene3D G3DSA:2.20.25.90 66 118 8.4E-15 T 23-04-2016 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 SUPERFAMILY SSF53706 66 666 1.03E-201 T 23-04-2016 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 Pfam PF00384 Molybdopterin oxidoreductase 123 574 5.9E-61 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 71 88 - T 23-04-2016 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 Gene3D G3DSA:2.40.40.20 821 957 2.7E-48 T 23-04-2016 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 Gene3D G3DSA:2.40.40.20 646 679 2.7E-48 T 23-04-2016 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 Gene3D G3DSA:2.40.40.20 778 789 2.7E-48 T 23-04-2016 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 Pfam PF01568 Molydopterin dinucleotide binding domain 827 953 2.1E-18 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 Gene3D G3DSA:3.40.228.10 199 424 1.9E-87 T 23-04-2016 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 PANTHER PTHR11615 411 604 0.0 T 23-04-2016 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 PANTHER PTHR11615 15 387 0.0 T 23-04-2016 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 PANTHER PTHR11615 741 957 0.0 T 23-04-2016 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 69 119 6.5E-10 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 PANTHER PTHR11615:SF140 411 604 0.0 T 23-04-2016 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 PANTHER PTHR11615:SF140 15 387 0.0 T 23-04-2016 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 PANTHER PTHR11615:SF140 741 957 0.0 T 23-04-2016 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 Gene3D G3DSA:3.40.50.740 119 198 2.4E-14 T 23-04-2016 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 Gene3D G3DSA:3.40.50.740 443 519 2.4E-14 T 23-04-2016 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 SMART SM00926 66 120 9.2E-13 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RD1_RS13340 bba4d544ff369f5146925df379ec3c66 960 SUPERFAMILY SSF50692 809 957 1.13E-33 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain RD1_RS06745 e18a2bad38e9333c9829c1bc00c847e5 515 Gene3D G3DSA:3.20.20.450 247 499 4.5E-74 T 23-04-2016 IPR001633 EAL domain RD1_RS06745 e18a2bad38e9333c9829c1bc00c847e5 515 SMART SM00052 244 491 6.5E-75 T 23-04-2016 IPR001633 EAL domain RD1_RS06745 e18a2bad38e9333c9829c1bc00c847e5 515 Gene3D G3DSA:3.30.70.270 73 241 4.6E-15 T 23-04-2016 RD1_RS06745 e18a2bad38e9333c9829c1bc00c847e5 515 SUPERFAMILY SSF55073 83 236 4.32E-13 T 23-04-2016 IPR029787 Nucleotide cyclase RD1_RS06745 e18a2bad38e9333c9829c1bc00c847e5 515 SMART SM00267 60 234 2.0E-4 T 23-04-2016 IPR000160 GGDEF domain RD1_RS06745 e18a2bad38e9333c9829c1bc00c847e5 515 PANTHER PTHR33121:SF13 229 512 3.0E-58 T 23-04-2016 RD1_RS06745 e18a2bad38e9333c9829c1bc00c847e5 515 Pfam PF00563 EAL domain 250 486 3.9E-64 T 23-04-2016 IPR001633 EAL domain RD1_RS06745 e18a2bad38e9333c9829c1bc00c847e5 515 PANTHER PTHR33121 229 512 3.0E-58 T 23-04-2016 RD1_RS06745 e18a2bad38e9333c9829c1bc00c847e5 515 SUPERFAMILY SSF141868 251 499 8.5E-70 T 23-04-2016 IPR001633 EAL domain RD1_RS06745 e18a2bad38e9333c9829c1bc00c847e5 515 Pfam PF00990 Diguanylate cyclase, GGDEF domain 84 227 2.3E-8 T 23-04-2016 IPR000160 GGDEF domain RD1_RS12585 b4f943d6c2746adcbebca45bce2a6221 207 SUPERFAMILY SSF51182 95 204 2.72E-22 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS12585 b4f943d6c2746adcbebca45bce2a6221 207 PANTHER PTHR10245 26 188 3.5E-33 T 23-04-2016 RD1_RS12585 b4f943d6c2746adcbebca45bce2a6221 207 SUPERFAMILY SSF47413 25 89 4.02E-18 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS12585 b4f943d6c2746adcbebca45bce2a6221 207 SMART SM00530 30 85 1.2E-16 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS12585 b4f943d6c2746adcbebca45bce2a6221 207 Gene3D G3DSA:2.60.120.10 114 205 2.6E-11 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS12585 b4f943d6c2746adcbebca45bce2a6221 207 Gene3D G3DSA:1.10.260.40 26 94 3.1E-22 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS12585 b4f943d6c2746adcbebca45bce2a6221 207 Pfam PF01381 Helix-turn-helix 31 83 5.2E-16 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS12585 b4f943d6c2746adcbebca45bce2a6221 207 Pfam PF07883 Cupin domain 145 203 2.2E-10 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RD1_RS12585 b4f943d6c2746adcbebca45bce2a6221 207 PANTHER PTHR10245:SF30 26 188 3.5E-33 T 23-04-2016 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 SUPERFAMILY SSF82693 136 183 1.4E-22 T 23-04-2016 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 SUPERFAMILY SSF82866 804 1028 9.68E-45 T 23-04-2016 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 4.4E-83 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 4.4E-83 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 4.4E-83 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 4.4E-83 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 4.4E-83 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 4.4E-83 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 4.4E-83 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 4.4E-83 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 4.4E-83 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 SUPERFAMILY SSF82714 720 804 1.7E-20 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 Gene3D G3DSA:1.10.3850.10 812 1025 8.5E-56 T 23-04-2016 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 Gene3D G3DSA:1.20.1640.10 293 505 4.2E-58 T 23-04-2016 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 Gene3D G3DSA:3.30.2090.10 720 804 1.5E-22 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 PANTHER PTHR32063:SF27 1 1039 0.0 T 23-04-2016 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 PANTHER PTHR32063 1 1039 0.0 T 23-04-2016 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 SUPERFAMILY SSF82693 564 669 2.96E-24 T 23-04-2016 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1029 0.0 T 23-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 SUPERFAMILY SSF82714 184 273 2.88E-22 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 Pfam PF00873 AcrB/AcrD/AcrF family 3 1024 0.0 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 Gene3D G3DSA:3.30.70.1430 39 140 3.8E-29 T 23-04-2016 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 Gene3D G3DSA:3.30.2090.10 184 277 2.6E-28 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 SUPERFAMILY SSF82693 276 332 1.4E-22 T 23-04-2016 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 SUPERFAMILY SSF82866 298 499 4.84E-50 T 23-04-2016 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 Gene3D G3DSA:3.30.70.1430 566 669 1.3E-26 T 23-04-2016 RD1_RS11660 157e1253a7081eb98b72525cfe0d6f59 1043 SUPERFAMILY SSF82693 39 132 4.5E-24 T 23-04-2016 RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 Pfam PF13241 Putative NAD(P)-binding 6 115 6.8E-16 T 23-04-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 Gene3D G3DSA:1.10.8.210 150 207 8.1E-6 T 23-04-2016 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 206 9.6E-54 T 23-04-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 217 444 2.4E-66 T 23-04-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 Gene3D G3DSA:3.40.50.720 1 111 1.1E-25 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 PANTHER PTHR21091:SF16 166 430 3.2E-51 T 23-04-2016 RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 222 236 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 Gene3D G3DSA:3.30.950.10 333 445 3.8E-17 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 Gene3D G3DSA:3.40.1010.10 217 332 4.0E-41 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 Pfam PF10414 Sirohaem synthase dimerisation region 150 205 5.6E-10 T 23-04-2016 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 PIRSF PIRSF036426 1 450 1.2E-128 T 23-04-2016 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 219 429 1.9E-41 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 SUPERFAMILY SSF53790 216 451 3.53E-59 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 PANTHER PTHR21091 166 430 3.2E-51 T 23-04-2016 RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 SUPERFAMILY SSF75615 114 206 8.63E-20 T 23-04-2016 RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 SUPERFAMILY SSF51735 1 112 1.16E-16 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19050 20f8212f48d59d5eddd717383a682cf7 465 Gene3D G3DSA:3.30.160.110 113 147 5.7E-17 T 23-04-2016 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 Pfam PF02167 Cytochrome C1 family 15 236 1.1E-71 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 PANTHER PTHR10266 1 112 8.8E-50 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 PANTHER PTHR10266 130 238 8.8E-50 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 PRINTS PR00603 Cytochrome C1 signature 13 32 4.1E-47 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 PRINTS PR00603 Cytochrome C1 signature 153 164 4.1E-47 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 PRINTS PR00603 Cytochrome C1 signature 99 123 4.1E-47 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 PRINTS PR00603 Cytochrome C1 signature 184 203 4.1E-47 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 PRINTS PR00603 Cytochrome C1 signature 77 97 4.1E-47 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 PRINTS PR00603 Cytochrome C1 signature 164 183 4.1E-47 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 PRINTS PR00603 Cytochrome C1 signature 33 52 4.1E-47 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 PRINTS PR00603 Cytochrome C1 signature 203 218 4.1E-47 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 Gene3D G3DSA:1.10.760.10 8 203 6.2E-57 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 SUPERFAMILY SSF46626 8 202 3.74E-42 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 PANTHER PTHR10266:SF3 1 112 8.8E-50 T 23-04-2016 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 PANTHER PTHR10266:SF3 130 238 8.8E-50 T 23-04-2016 RD1_RS02625 c0c2bba4777ffd8ca8c4585753b4beb6 243 Gene3D G3DSA:1.20.5.100 204 238 1.1E-20 T 23-04-2016 RD1_RS06950 d5544715c7ff2458e8100a5029c67dbd 383 Pfam PF13458 Periplasmic binding protein 23 356 6.4E-45 T 23-04-2016 IPR028081 Leucine-binding protein domain RD1_RS06950 d5544715c7ff2458e8100a5029c67dbd 383 SUPERFAMILY SSF53822 23 383 8.99E-60 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS06950 d5544715c7ff2458e8100a5029c67dbd 383 PANTHER PTHR30483 4 374 1.7E-40 T 23-04-2016 RD1_RS06950 d5544715c7ff2458e8100a5029c67dbd 383 Gene3D G3DSA:3.40.50.2300 22 221 4.2E-35 T 23-04-2016 RD1_RS06950 d5544715c7ff2458e8100a5029c67dbd 383 PANTHER PTHR30483:SF6 4 374 1.7E-40 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RD1_RS11315 01cab1201f31ec3cf4e480ed12f9e3aa 182 PANTHER PTHR30173 10 166 5.3E-40 T 23-04-2016 RD1_RS11315 01cab1201f31ec3cf4e480ed12f9e3aa 182 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 7 155 3.2E-24 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS11315 01cab1201f31ec3cf4e480ed12f9e3aa 182 Gene3D G3DSA:1.10.10.10 99 157 1.2E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11315 01cab1201f31ec3cf4e480ed12f9e3aa 182 SUPERFAMILY SSF88946 8 85 7.46E-22 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS11315 01cab1201f31ec3cf4e480ed12f9e3aa 182 SUPERFAMILY SSF88659 96 156 3.92E-15 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS11315 01cab1201f31ec3cf4e480ed12f9e3aa 182 Pfam PF08281 Sigma-70, region 4 102 152 3.6E-15 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS11315 01cab1201f31ec3cf4e480ed12f9e3aa 182 Gene3D G3DSA:1.10.1740.10 10 94 1.3E-22 T 23-04-2016 RD1_RS11315 01cab1201f31ec3cf4e480ed12f9e3aa 182 Pfam PF04542 Sigma-70 region 2 10 74 3.2E-15 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS11315 01cab1201f31ec3cf4e480ed12f9e3aa 182 PANTHER PTHR30173:SF6 10 166 5.3E-40 T 23-04-2016 RD1_RS11430 644796c7df934b43db0aeb3b92a2fa3a 916 Gene3D G3DSA:3.30.65.10 871 910 1.4E-7 T 23-04-2016 RD1_RS11430 644796c7df934b43db0aeb3b92a2fa3a 916 Pfam PF00580 UvrD/REP helicase N-terminal domain 146 594 3.4E-37 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RD1_RS11430 644796c7df934b43db0aeb3b92a2fa3a 916 SUPERFAMILY SSF52540 144 293 2.01E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11430 644796c7df934b43db0aeb3b92a2fa3a 916 SUPERFAMILY SSF52540 491 795 2.01E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11430 644796c7df934b43db0aeb3b92a2fa3a 916 Gene3D G3DSA:3.40.91.30 315 370 7.6E-6 T 23-04-2016 IPR011578 Restriction endonuclease, FokI, C-terminal/endonuclease I, core GO:0003677|GO:0004536 RD1_RS11430 644796c7df934b43db0aeb3b92a2fa3a 916 SUPERFAMILY SSF57783 867 909 1.55E-6 T 23-04-2016 RD1_RS11430 644796c7df934b43db0aeb3b92a2fa3a 916 PANTHER PTHR11070 45 305 1.6E-89 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RD1_RS11430 644796c7df934b43db0aeb3b92a2fa3a 916 Gene3D G3DSA:3.40.50.300 501 595 2.6E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11430 644796c7df934b43db0aeb3b92a2fa3a 916 Gene3D G3DSA:3.40.50.300 144 281 2.6E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11430 644796c7df934b43db0aeb3b92a2fa3a 916 Gene3D G3DSA:3.40.50.300 710 795 1.5E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11430 644796c7df934b43db0aeb3b92a2fa3a 916 PANTHER PTHR11070:SF26 45 305 1.6E-89 T 23-04-2016 RD1_RS11430 644796c7df934b43db0aeb3b92a2fa3a 916 PANTHER PTHR11070 480 796 1.6E-89 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RD1_RS11430 644796c7df934b43db0aeb3b92a2fa3a 916 Pfam PF13361 UvrD-like helicase C-terminal domain 711 782 4.8E-12 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RD1_RS11430 644796c7df934b43db0aeb3b92a2fa3a 916 PANTHER PTHR11070:SF26 480 796 1.6E-89 T 23-04-2016 RD1_RS11430 644796c7df934b43db0aeb3b92a2fa3a 916 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 875 910 8.3E-10 T 23-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 RD1_RS08295 75639afd09c0787ff3c5e973c3400efe 139 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 13 134 3.3E-36 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RD1_RS08295 75639afd09c0787ff3c5e973c3400efe 139 PANTHER PTHR30615 1 139 3.6E-52 T 23-04-2016 RD1_RS08295 75639afd09c0787ff3c5e973c3400efe 139 Gene3D G3DSA:2.60.120.460 1 135 2.3E-49 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RD1_RS08295 75639afd09c0787ff3c5e973c3400efe 139 PIRSF PIRSF004681 1 138 6.2E-44 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RD1_RS08295 75639afd09c0787ff3c5e973c3400efe 139 SUPERFAMILY SSF111038 2 135 2.09E-44 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RD1_RS08295 75639afd09c0787ff3c5e973c3400efe 139 Pfam PF01894 Uncharacterised protein family UPF0047 16 133 9.9E-36 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RD1_RS08295 75639afd09c0787ff3c5e973c3400efe 139 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 99 117 - T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RD1_RS10690 e8efeaaffb724979f32007886c54b4e6 342 Gene3D G3DSA:3.40.50.2300 53 175 3.6E-28 T 23-04-2016 RD1_RS10690 e8efeaaffb724979f32007886c54b4e6 342 PANTHER PTHR30146 1 340 1.0E-77 T 23-04-2016 RD1_RS10690 e8efeaaffb724979f32007886c54b4e6 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 11 47 7.7E-11 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS10690 e8efeaaffb724979f32007886c54b4e6 342 Gene3D G3DSA:3.40.50.2300 176 316 1.7E-38 T 23-04-2016 RD1_RS10690 e8efeaaffb724979f32007886c54b4e6 342 SMART SM00354 1 70 3.7E-12 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS10690 e8efeaaffb724979f32007886c54b4e6 342 Gene3D G3DSA:1.10.260.40 2 52 2.3E-19 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS10690 e8efeaaffb724979f32007886c54b4e6 342 SUPERFAMILY SSF53822 72 340 9.24E-48 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS10690 e8efeaaffb724979f32007886c54b4e6 342 SUPERFAMILY SSF47413 2 58 1.69E-14 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS10690 e8efeaaffb724979f32007886c54b4e6 342 Pfam PF13377 Periplasmic binding protein-like domain 172 336 3.9E-28 T 23-04-2016 RD1_RS10690 e8efeaaffb724979f32007886c54b4e6 342 PANTHER PTHR30146:SF30 1 340 1.0E-77 T 23-04-2016 RD1_RS14535 f2fb1b8add74eabad41d0ba4fd3bb6bf 201 PANTHER PTHR34298:SF2 3 175 3.2E-48 T 23-04-2016 RD1_RS14535 f2fb1b8add74eabad41d0ba4fd3bb6bf 201 Pfam PF04079 Segregation and condensation complex subunit ScpB 7 160 3.7E-48 T 23-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RD1_RS14535 f2fb1b8add74eabad41d0ba4fd3bb6bf 201 SUPERFAMILY SSF46785 78 152 4.96E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS14535 f2fb1b8add74eabad41d0ba4fd3bb6bf 201 SUPERFAMILY SSF46785 3 73 3.11E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS14535 f2fb1b8add74eabad41d0ba4fd3bb6bf 201 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 6 165 6.6E-31 T 23-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RD1_RS14535 f2fb1b8add74eabad41d0ba4fd3bb6bf 201 PANTHER PTHR34298 3 175 3.2E-48 T 23-04-2016 RD1_RS14535 f2fb1b8add74eabad41d0ba4fd3bb6bf 201 PIRSF PIRSF019345 2 197 3.0E-49 T 23-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RD1_RS14535 f2fb1b8add74eabad41d0ba4fd3bb6bf 201 Gene3D G3DSA:1.10.10.10 77 152 2.2E-33 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS14535 f2fb1b8add74eabad41d0ba4fd3bb6bf 201 Gene3D G3DSA:1.10.10.10 3 73 1.7E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 Gene3D G3DSA:3.40.50.300 3 172 6.3E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 Gene3D G3DSA:3.40.50.300 199 388 3.7E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 SUPERFAMILY SSF52540 138 167 2.72E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 SUPERFAMILY SSF52540 198 467 2.72E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 200 373 1.8E-22 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 124 1.2E-17 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 Gene3D G3DSA:3.30.300.20 389 465 3.5E-32 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 383 463 4.3E-31 T 23-04-2016 IPR032859 GTPase Der, C-terminal KH-domain-like RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 PIRSF PIRSF006485 1 472 2.3E-149 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 Hamap MF_00195 GTPase Der [der]. 2 466 35.648 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 PRINTS PR00449 Transforming protein P21 ras signature 246 268 1.1E-5 T 23-04-2016 RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 PRINTS PR00449 Transforming protein P21 ras signature 315 328 1.1E-5 T 23-04-2016 RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 PRINTS PR00449 Transforming protein P21 ras signature 355 377 1.1E-5 T 23-04-2016 RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 PRINTS PR00449 Transforming protein P21 ras signature 201 222 1.1E-5 T 23-04-2016 RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 PANTHER PTHR11649:SF68 1 463 7.2E-184 T 23-04-2016 RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 SUPERFAMILY SSF52540 3 165 7.3E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 Pfam PF01926 50S ribosome-binding GTPase 5 120 3.0E-23 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 Pfam PF01926 50S ribosome-binding GTPase 202 325 5.4E-18 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 4 463 1.7E-159 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RD1_RS08220 d5f0976d94197f57e3177bd97bb73cd8 492 PANTHER PTHR11649 1 463 7.2E-184 T 23-04-2016 RD1_RS13370 19fc811e6d4cb446f28cc0ae8349e5ab 245 SUPERFAMILY SSF46626 133 231 2.66E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS13370 19fc811e6d4cb446f28cc0ae8349e5ab 245 Gene3D G3DSA:1.10.760.10 136 234 2.5E-4 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS14625 b269a94449fad7d0fda41b32cb6f259b 539 Gene3D G3DSA:3.20.20.70 3 352 3.7E-116 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS14625 b269a94449fad7d0fda41b32cb6f259b 539 Pfam PF00682 HMGL-like 6 273 1.2E-46 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 RD1_RS14625 b269a94449fad7d0fda41b32cb6f259b 539 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 13 29 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RD1_RS14625 b269a94449fad7d0fda41b32cb6f259b 539 PANTHER PTHR10277:SF5 1 538 6.7E-221 T 23-04-2016 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101|UniPathway: UPA00047 RD1_RS14625 b269a94449fad7d0fda41b32cb6f259b 539 SMART SM00917 380 532 2.2E-29 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RD1_RS14625 b269a94449fad7d0fda41b32cb6f259b 539 SUPERFAMILY SSF51569 3 298 6.96E-78 T 23-04-2016 RD1_RS14625 b269a94449fad7d0fda41b32cb6f259b 539 PANTHER PTHR10277 1 538 6.7E-221 T 23-04-2016 RD1_RS14625 b269a94449fad7d0fda41b32cb6f259b 539 TIGRFAM TIGR00977 citramal_synth: citramalate synthase 6 535 1.9E-177 T 23-04-2016 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101|UniPathway: UPA00047 RD1_RS14625 b269a94449fad7d0fda41b32cb6f259b 539 Pfam PF08502 LeuA allosteric (dimerisation) domain 382 529 6.3E-22 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RD1_RS14625 b269a94449fad7d0fda41b32cb6f259b 539 SUPERFAMILY SSF110921 443 528 1.29E-15 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RD1_RS12360 a3505da4e8a47e45aa7a9e1d25c7df87 266 SUPERFAMILY SSF55073 85 260 3.14E-34 T 23-04-2016 IPR029787 Nucleotide cyclase RD1_RS12360 a3505da4e8a47e45aa7a9e1d25c7df87 266 Gene3D G3DSA:3.30.70.1230 90 259 1.3E-27 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RD1_RS12360 a3505da4e8a47e45aa7a9e1d25c7df87 266 PANTHER PTHR11920:SF257 91 238 4.5E-22 T 23-04-2016 RD1_RS12360 a3505da4e8a47e45aa7a9e1d25c7df87 266 PANTHER PTHR11920 91 238 4.5E-22 T 23-04-2016 RD1_RS12360 a3505da4e8a47e45aa7a9e1d25c7df87 266 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 90 255 5.9E-19 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RD1_RS12360 a3505da4e8a47e45aa7a9e1d25c7df87 266 SMART SM00044 63 247 0.0019 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RD1_RS11595 6de40950ec8f22921c92863eab032efd 347 PANTHER PTHR11732 1 132 2.3E-113 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RD1_RS11595 6de40950ec8f22921c92863eab032efd 347 PANTHER PTHR11732 154 346 2.3E-113 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RD1_RS11595 6de40950ec8f22921c92863eab032efd 347 Gene3D G3DSA:3.20.20.100 1 345 5.1E-91 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS11595 6de40950ec8f22921c92863eab032efd 347 PANTHER PTHR11732:SF112 1 132 2.3E-113 T 23-04-2016 RD1_RS11595 6de40950ec8f22921c92863eab032efd 347 PANTHER PTHR11732:SF112 154 346 2.3E-113 T 23-04-2016 RD1_RS11595 6de40950ec8f22921c92863eab032efd 347 Pfam PF00248 Aldo/keto reductase family 17 339 5.4E-66 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS11595 6de40950ec8f22921c92863eab032efd 347 SUPERFAMILY SSF51430 1 346 1.11E-93 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS19420 6884ce2f81d25ebb7cee3c3004f5115e 413 Pfam PF00266 Aminotransferase class-V 122 199 5.7E-7 T 23-04-2016 IPR000192 Aminotransferase class V domain RD1_RS19420 6884ce2f81d25ebb7cee3c3004f5115e 413 PANTHER PTHR21152:SF21 18 98 2.0E-32 T 23-04-2016 RD1_RS19420 6884ce2f81d25ebb7cee3c3004f5115e 413 PANTHER PTHR21152:SF21 114 407 2.0E-32 T 23-04-2016 RD1_RS19420 6884ce2f81d25ebb7cee3c3004f5115e 413 SUPERFAMILY SSF53383 16 390 9.62E-58 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS19420 6884ce2f81d25ebb7cee3c3004f5115e 413 PANTHER PTHR21152 18 98 2.0E-32 T 23-04-2016 RD1_RS19420 6884ce2f81d25ebb7cee3c3004f5115e 413 PANTHER PTHR21152 114 407 2.0E-32 T 23-04-2016 RD1_RS19420 6884ce2f81d25ebb7cee3c3004f5115e 413 PIRSF PIRSF000524 7 412 4.8E-41 T 23-04-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RD1_RS19420 6884ce2f81d25ebb7cee3c3004f5115e 413 Gene3D G3DSA:3.90.1150.10 278 391 1.6E-7 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS19420 6884ce2f81d25ebb7cee3c3004f5115e 413 Gene3D G3DSA:3.40.640.10 25 277 2.5E-32 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 Gene3D G3DSA:3.40.120.10 251 368 1.6E-34 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 158 254 4.7E-18 T 23-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 135 1.1E-45 T 23-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 PANTHER PTHR22573:SF15 1 448 7.0E-157 T 23-04-2016 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 Gene3D G3DSA:3.40.120.10 176 250 1.3E-23 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 Gene3D G3DSA:3.40.120.10 2 152 6.0E-50 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 SUPERFAMILY SSF55957 360 447 2.09E-19 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 442 3.5E-11 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 5.9E-12 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 5.9E-12 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 5.9E-12 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 445 46.019 T 23-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 SUPERFAMILY SSF53738 157 255 1.26E-26 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 5 443 1.3E-184 T 23-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 SUPERFAMILY SSF53738 2 166 3.57E-48 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 366 4.5E-33 T 23-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 SUPERFAMILY SSF53738 258 366 1.96E-30 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 Gene3D G3DSA:3.30.310.50 370 444 1.2E-15 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 23-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RD1_RS09025 928fe2cea956bddb20680844acf79c6b 449 PANTHER PTHR22573 1 448 7.0E-157 T 23-04-2016 RD1_RS16850 118bf0f34de9082871038adad735e815 926 SMART SM00388 440 505 2.5E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS16850 118bf0f34de9082871038adad735e815 926 Gene3D G3DSA:3.30.565.10 511 671 8.2E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16850 118bf0f34de9082871038adad735e815 926 Pfam PF00512 His Kinase A (phospho-acceptor) domain 440 500 8.6E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS16850 118bf0f34de9082871038adad735e815 926 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 552 667 3.2E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16850 118bf0f34de9082871038adad735e815 926 Pfam PF00672 HAMP domain 332 400 6.7E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS16850 118bf0f34de9082871038adad735e815 926 SMART SM00448 689 800 1.4E-17 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS16850 118bf0f34de9082871038adad735e815 926 PANTHER PTHR24423 435 842 5.2E-102 T 23-04-2016 RD1_RS16850 118bf0f34de9082871038adad735e815 926 PANTHER PTHR24423 345 399 5.2E-102 T 23-04-2016 RD1_RS16850 118bf0f34de9082871038adad735e815 926 PANTHER PTHR24423 1 12 5.2E-102 T 23-04-2016 RD1_RS16850 118bf0f34de9082871038adad735e815 926 SUPERFAMILY SSF55874 494 671 1.96E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16850 118bf0f34de9082871038adad735e815 926 Gene3D G3DSA:3.40.50.2300 690 792 2.8E-25 T 23-04-2016 RD1_RS16850 118bf0f34de9082871038adad735e815 926 Pfam PF00072 Response regulator receiver domain 691 800 1.9E-17 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS16850 118bf0f34de9082871038adad735e815 926 SUPERFAMILY SSF52172 689 802 1.07E-25 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS16850 118bf0f34de9082871038adad735e815 926 SMART SM00387 552 669 4.6E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16850 118bf0f34de9082871038adad735e815 926 PRINTS PR00344 Bacterial sensor protein C-terminal signature 653 666 4.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS16850 118bf0f34de9082871038adad735e815 926 PRINTS PR00344 Bacterial sensor protein C-terminal signature 629 647 4.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS16850 118bf0f34de9082871038adad735e815 926 PRINTS PR00344 Bacterial sensor protein C-terminal signature 594 608 4.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS16850 118bf0f34de9082871038adad735e815 926 PRINTS PR00344 Bacterial sensor protein C-terminal signature 612 622 4.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS16850 118bf0f34de9082871038adad735e815 926 Gene3D G3DSA:1.20.120.160 793 909 4.1E-10 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RD1_RS16850 118bf0f34de9082871038adad735e815 926 SUPERFAMILY SSF47226 786 890 1.02E-9 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RD1_RS16850 118bf0f34de9082871038adad735e815 926 Gene3D G3DSA:1.10.287.130 433 500 2.1E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS16850 118bf0f34de9082871038adad735e815 926 SMART SM00304 352 404 3.8E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS16850 118bf0f34de9082871038adad735e815 926 SUPERFAMILY SSF47384 428 501 3.73E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS03515 d61b2dfaf5b07a1e33727abe6d086822 355 Pfam PF01734 Patatin-like phospholipase 9 203 5.0E-20 T 23-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 RD1_RS03515 d61b2dfaf5b07a1e33727abe6d086822 355 PANTHER PTHR14226:SF37 119 253 4.6E-51 T 23-04-2016 RD1_RS03515 d61b2dfaf5b07a1e33727abe6d086822 355 PANTHER PTHR14226:SF37 4 83 4.6E-51 T 23-04-2016 RD1_RS03515 d61b2dfaf5b07a1e33727abe6d086822 355 PANTHER PTHR14226 119 253 4.6E-51 T 23-04-2016 RD1_RS03515 d61b2dfaf5b07a1e33727abe6d086822 355 PANTHER PTHR14226 4 83 4.6E-51 T 23-04-2016 RD1_RS03515 d61b2dfaf5b07a1e33727abe6d086822 355 Gene3D G3DSA:3.40.1090.10 9 208 4.5E-10 T 23-04-2016 RD1_RS03515 d61b2dfaf5b07a1e33727abe6d086822 355 SUPERFAMILY SSF52151 2 82 4.45E-54 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RD1_RS03515 d61b2dfaf5b07a1e33727abe6d086822 355 SUPERFAMILY SSF52151 113 320 4.45E-54 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RD1_RS00685 c491dd6efc6e741da3cde3ac8c43ee40 694 PANTHER PTHR30161 1 694 6.5E-226 T 23-04-2016 RD1_RS00685 c491dd6efc6e741da3cde3ac8c43ee40 694 Pfam PF00771 FHIPEP family 23 681 3.1E-219 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RD1_RS00685 c491dd6efc6e741da3cde3ac8c43ee40 694 PANTHER PTHR30161:SF1 1 694 6.5E-226 T 23-04-2016 RD1_RS00685 c491dd6efc6e741da3cde3ac8c43ee40 694 PIRSF PIRSF005419 1 694 1.3E-189 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RD1_RS00685 c491dd6efc6e741da3cde3ac8c43ee40 694 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 234 248 3.1E-45 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RD1_RS00685 c491dd6efc6e741da3cde3ac8c43ee40 694 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 30 43 3.1E-45 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RD1_RS00685 c491dd6efc6e741da3cde3ac8c43ee40 694 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 153 171 3.1E-45 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RD1_RS00685 c491dd6efc6e741da3cde3ac8c43ee40 694 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 134 150 3.1E-45 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RD1_RS00685 c491dd6efc6e741da3cde3ac8c43ee40 694 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 67 86 3.1E-45 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RD1_RS00685 c491dd6efc6e741da3cde3ac8c43ee40 694 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 183 200 3.1E-45 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RD1_RS00685 c491dd6efc6e741da3cde3ac8c43ee40 694 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 13 692 1.8E-248 T 23-04-2016 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 RD1_RS10975 872f7c39da0a922c153006ec4e60687e 186 Pfam PF00625 Guanylate kinase 9 153 1.9E-5 T 23-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RD1_RS10975 872f7c39da0a922c153006ec4e60687e 186 Gene3D G3DSA:3.40.50.300 7 31 3.1E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10975 872f7c39da0a922c153006ec4e60687e 186 Gene3D G3DSA:3.40.50.300 78 153 3.1E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10975 872f7c39da0a922c153006ec4e60687e 186 SMART SM00072 8 182 4.3E-7 T 23-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RD1_RS10975 872f7c39da0a922c153006ec4e60687e 186 SUPERFAMILY SSF52540 7 183 9.98E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10975 872f7c39da0a922c153006ec4e60687e 186 TIGRFAM TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 9 182 2.9E-54 T 23-04-2016 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532|UniPathway: UPA00087 RD1_RS10975 872f7c39da0a922c153006ec4e60687e 186 PANTHER PTHR23117:SF8 9 182 9.3E-42 T 23-04-2016 RD1_RS10975 872f7c39da0a922c153006ec4e60687e 186 Hamap MF_00836 Ribose 1,5-bisphosphate phosphokinase PhnN [phnN]. 8 182 33.761 T 23-04-2016 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532|UniPathway: UPA00087 RD1_RS10975 872f7c39da0a922c153006ec4e60687e 186 PANTHER PTHR23117 9 182 9.3E-42 T 23-04-2016 RD1_RS07090 9d7a9a146d218cbae5086a370c0250d6 280 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 2 165 1.3E-39 T 23-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RD1_RS07090 9d7a9a146d218cbae5086a370c0250d6 280 PANTHER PTHR11908:SF68 1 275 5.0E-51 T 23-04-2016 RD1_RS07090 9d7a9a146d218cbae5086a370c0250d6 280 SUPERFAMILY SSF55447 172 278 3.14E-23 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RD1_RS07090 9d7a9a146d218cbae5086a370c0250d6 280 SUPERFAMILY SSF56176 2 165 5.45E-44 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RD1_RS07090 9d7a9a146d218cbae5086a370c0250d6 280 Gene3D G3DSA:3.30.390.50 171 277 7.0E-27 T 23-04-2016 RD1_RS07090 9d7a9a146d218cbae5086a370c0250d6 280 SMART SM01092 172 275 4.6E-26 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RD1_RS07090 9d7a9a146d218cbae5086a370c0250d6 280 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 173 274 4.2E-17 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RD1_RS07090 9d7a9a146d218cbae5086a370c0250d6 280 Gene3D G3DSA:3.30.465.10 51 165 8.9E-35 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RD1_RS07090 9d7a9a146d218cbae5086a370c0250d6 280 PANTHER PTHR11908 1 275 5.0E-51 T 23-04-2016 RD1_RS10710 197038a1a1c616df15828b0483ec179b 550 Gene3D G3DSA:2.60.40.1180 483 544 2.7E-6 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta RD1_RS10710 197038a1a1c616df15828b0483ec179b 550 Pfam PF00128 Alpha amylase, catalytic domain 40 387 6.1E-87 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RD1_RS10710 197038a1a1c616df15828b0483ec179b 550 PANTHER PTHR10357:SF11 451 508 7.6E-149 T 23-04-2016 RD1_RS10710 197038a1a1c616df15828b0483ec179b 550 PANTHER PTHR10357:SF11 14 418 7.6E-149 T 23-04-2016 RD1_RS10710 197038a1a1c616df15828b0483ec179b 550 Gene3D G3DSA:3.20.20.80 15 116 6.5E-103 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RD1_RS10710 197038a1a1c616df15828b0483ec179b 550 Gene3D G3DSA:3.20.20.80 188 475 6.5E-103 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RD1_RS10710 197038a1a1c616df15828b0483ec179b 550 SUPERFAMILY SSF51011 481 545 9.26E-8 T 23-04-2016 RD1_RS10710 197038a1a1c616df15828b0483ec179b 550 Pfam PF11941 Domain of unknown function (DUF3459) 459 545 1.1E-7 T 23-04-2016 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) RD1_RS10710 197038a1a1c616df15828b0483ec179b 550 PANTHER PTHR10357 451 508 7.6E-149 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RD1_RS10710 197038a1a1c616df15828b0483ec179b 550 PANTHER PTHR10357 14 418 7.6E-149 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RD1_RS10710 197038a1a1c616df15828b0483ec179b 550 SUPERFAMILY SSF51445 15 472 9.43E-134 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RD1_RS10710 197038a1a1c616df15828b0483ec179b 550 SMART SM00642 25 413 9.8E-125 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RD1_RS10710 197038a1a1c616df15828b0483ec179b 550 Gene3D G3DSA:3.90.400.10 117 187 3.1E-31 T 23-04-2016 RD1_RS17955 8f93aef22955a23bf551e9b1dcdf0324 441 PANTHER PTHR11918 5 441 1.1E-176 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RD1_RS17955 8f93aef22955a23bf551e9b1dcdf0324 441 SMART SM00729 149 368 6.6E-58 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RD1_RS17955 8f93aef22955a23bf551e9b1dcdf0324 441 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 6 437 5.4E-151 T 23-04-2016 RD1_RS17955 8f93aef22955a23bf551e9b1dcdf0324 441 Pfam PF00919 Uncharacterized protein family UPF0004 6 105 9.1E-33 T 23-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 RD1_RS17955 8f93aef22955a23bf551e9b1dcdf0324 441 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 5 440 71.882 T 23-04-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 RD1_RS17955 8f93aef22955a23bf551e9b1dcdf0324 441 Pfam PF01938 TRAM domain 379 437 2.1E-9 T 23-04-2016 IPR002792 TRAM domain RD1_RS17955 8f93aef22955a23bf551e9b1dcdf0324 441 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 6 436 1.9E-146 T 23-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 RD1_RS17955 8f93aef22955a23bf551e9b1dcdf0324 441 PANTHER PTHR11918:SF43 5 441 1.1E-176 T 23-04-2016 RD1_RS17955 8f93aef22955a23bf551e9b1dcdf0324 441 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 153 173 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RD1_RS17955 8f93aef22955a23bf551e9b1dcdf0324 441 Gene3D G3DSA:3.80.30.20 149 381 1.4E-76 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RD1_RS17955 8f93aef22955a23bf551e9b1dcdf0324 441 Pfam PF04055 Radical SAM superfamily 154 327 1.1E-28 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RD1_RS17955 8f93aef22955a23bf551e9b1dcdf0324 441 SUPERFAMILY SSF102114 120 372 2.62E-58 T 23-04-2016 RD1_RS14955 8c48f9cf595594b2f4b01ffd909d8597 221 Pfam PF08279 HTH domain 6 58 6.8E-14 T 23-04-2016 IPR013196 Helix-turn-helix, type 11 RD1_RS14955 8c48f9cf595594b2f4b01ffd909d8597 221 Gene3D G3DSA:1.10.10.10 1 61 5.0E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS14955 8c48f9cf595594b2f4b01ffd909d8597 221 Pfam PF13280 WYL domain 136 219 1.1E-16 T 23-04-2016 IPR026881 WYL domain RD1_RS14955 8c48f9cf595594b2f4b01ffd909d8597 221 PANTHER PTHR34580 1 219 2.5E-31 T 23-04-2016 RD1_RS14955 8c48f9cf595594b2f4b01ffd909d8597 221 SUPERFAMILY SSF46785 1 60 1.82E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS01185 3002d1174379d82169a59b26ab6ca7fa 108 Pfam PF02049 Flagellar hook-basal body complex protein FliE 26 108 6.9E-18 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RD1_RS01185 3002d1174379d82169a59b26ab6ca7fa 108 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 4 108 13.244 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RD1_RS16010 6428f6d2b5ceb5317a321da3ec21941c 313 PANTHER PTHR30535:SF7 24 308 4.7E-110 T 23-04-2016 RD1_RS16010 6428f6d2b5ceb5317a321da3ec21941c 313 Pfam PF01497 Periplasmic binding protein 47 288 5.5E-28 T 23-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 RD1_RS16010 6428f6d2b5ceb5317a321da3ec21941c 313 PANTHER PTHR30535 24 308 4.7E-110 T 23-04-2016 RD1_RS16010 6428f6d2b5ceb5317a321da3ec21941c 313 Gene3D G3DSA:3.40.50.1980 180 310 9.0E-34 T 23-04-2016 RD1_RS16010 6428f6d2b5ceb5317a321da3ec21941c 313 Gene3D G3DSA:3.40.50.1980 41 176 5.0E-8 T 23-04-2016 RD1_RS16010 6428f6d2b5ceb5317a321da3ec21941c 313 SUPERFAMILY SSF53807 37 310 5.89E-48 T 23-04-2016 RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 SUPERFAMILY SSF51735 3 251 5.13E-62 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 181 0.0088 T 23-04-2016 RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 2.5E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 2.5E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.5E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 2.5E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.5E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 2.5E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 PANTHER PTHR24322 10 134 3.4E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 PANTHER PTHR24322 150 181 3.4E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 Pfam PF00106 short chain dehydrogenase 7 191 3.6E-48 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 Gene3D G3DSA:3.40.50.720 2 251 1.7E-67 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 3.1E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 3.1E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15260 f72f25417a1e714d1620c32a92834aa8 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 3.1E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01955 0d9968c87100d5b358c528ccffb87e54 206 PANTHER PTHR10173:SF6 10 161 2.2E-55 T 23-04-2016 RD1_RS01955 0d9968c87100d5b358c528ccffb87e54 206 PANTHER PTHR10173 10 161 2.2E-55 T 23-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 RD1_RS01955 0d9968c87100d5b358c528ccffb87e54 206 SUPERFAMILY SSF55068 11 163 3.01E-63 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RD1_RS01955 0d9968c87100d5b358c528ccffb87e54 206 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 19 162 2.2E-47 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RD1_RS01955 0d9968c87100d5b358c528ccffb87e54 206 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 18 175 31.124 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RD1_RS01955 0d9968c87100d5b358c528ccffb87e54 206 Gene3D G3DSA:3.30.1060.10 12 162 3.9E-60 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RD1_RS01955 0d9968c87100d5b358c528ccffb87e54 206 Pfam PF01625 Peptide methionine sulfoxide reductase 20 162 9.6E-52 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RD1_RS18605 cfa2e1dd74446ec26d90aec3c4a9abc7 1183 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 7 1056 0.0 T 23-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS18605 cfa2e1dd74446ec26d90aec3c4a9abc7 1183 Pfam PF02811 PHP domain 9 178 1.1E-33 T 23-04-2016 IPR004013 PHP domain GO:0003824 RD1_RS18605 cfa2e1dd74446ec26d90aec3c4a9abc7 1183 PANTHER PTHR32294 3 579 0.0 T 23-04-2016 RD1_RS18605 cfa2e1dd74446ec26d90aec3c4a9abc7 1183 PANTHER PTHR32294 597 1181 0.0 T 23-04-2016 RD1_RS18605 cfa2e1dd74446ec26d90aec3c4a9abc7 1183 PANTHER PTHR32294:SF0 3 579 0.0 T 23-04-2016 RD1_RS18605 cfa2e1dd74446ec26d90aec3c4a9abc7 1183 PANTHER PTHR32294:SF0 597 1181 0.0 T 23-04-2016 RD1_RS18605 cfa2e1dd74446ec26d90aec3c4a9abc7 1183 Gene3D G3DSA:3.20.20.140 7 266 8.3E-22 T 23-04-2016 RD1_RS18605 cfa2e1dd74446ec26d90aec3c4a9abc7 1183 Pfam PF14579 Helix-hairpin-helix motif 823 915 1.7E-16 T 23-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS18605 cfa2e1dd74446ec26d90aec3c4a9abc7 1183 SMART SM00481 8 75 2.6E-20 T 23-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 RD1_RS18605 cfa2e1dd74446ec26d90aec3c4a9abc7 1183 SUPERFAMILY SSF89550 7 273 1.29E-13 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 RD1_RS18605 cfa2e1dd74446ec26d90aec3c4a9abc7 1183 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 297 745 9.2E-166 T 23-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS11870 9b309cc6a1bb6fd0405cd5d38d1a431c 166 PANTHER PTHR10302 1 166 1.4E-45 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RD1_RS11870 9b309cc6a1bb6fd0405cd5d38d1a431c 166 SUPERFAMILY SSF50249 4 166 1.47E-52 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS11870 9b309cc6a1bb6fd0405cd5d38d1a431c 166 Hamap MF_00984 Single-stranded DNA-binding protein. 5 118 34.854 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RD1_RS11870 9b309cc6a1bb6fd0405cd5d38d1a431c 166 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 166 1.7E-48 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RD1_RS11870 9b309cc6a1bb6fd0405cd5d38d1a431c 166 Gene3D G3DSA:2.40.50.140 2 166 3.0E-51 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS11870 9b309cc6a1bb6fd0405cd5d38d1a431c 166 Pfam PF00436 Single-strand binding protein family 5 105 3.3E-39 T 23-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 Pfam PF01588 Putative tRNA binding domain 46 140 3.5E-19 T 23-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 Gene3D G3DSA:3.30.70.380 708 798 8.4E-24 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 798 1.8E-198 T 23-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 SUPERFAMILY SSF54991 701 798 6.8E-24 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 Gene3D G3DSA:3.30.930.10 491 684 4.9E-60 T 23-04-2016 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 SUPERFAMILY SSF56037 206 403 2.2E-69 T 23-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 SUPERFAMILY SSF55681 487 683 2.88E-41 T 23-04-2016 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 SMART SM00874 407 471 2.5E-17 T 23-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 Pfam PF03484 tRNA synthetase B5 domain 411 468 8.2E-15 T 23-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 Gene3D G3DSA:2.40.50.140 40 150 2.1E-37 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 SUPERFAMILY SSF46955 408 474 7.05E-12 T 23-04-2016 IPR009061 Putative DNA-binding domain RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 SMART SM00873 218 391 7.7E-84 T 23-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 Gene3D G3DSA:3.50.40.10 208 399 1.3E-75 T 23-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 SMART SM00896 705 798 1.5E-33 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 SUPERFAMILY SSF50249 36 199 3.43E-37 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 Gene3D G3DSA:3.30.56.20 407 473 8.7E-16 T 23-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 792 38.465 T 23-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 Gene3D G3DSA:3.30.56.10 1 38 2.0E-23 T 23-04-2016 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 Gene3D G3DSA:3.30.56.10 159 185 2.0E-23 T 23-04-2016 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 Pfam PF03483 B3/4 domain 218 391 1.5E-60 T 23-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 Pfam PF03147 Ferredoxin-fold anticodon binding domain 705 798 4.0E-22 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 PANTHER PTHR10947:SF0 2 798 1.6E-220 T 23-04-2016 RD1_RS04675 a6c9ad1683bc67f006b503c40a5e4045 799 PANTHER PTHR10947 2 798 1.6E-220 T 23-04-2016 RD1_RS13020 4fb7ca2d6fdff83442a2fa406eeed716 312 Gene3D G3DSA:2.60.120.10 26 264 2.3E-64 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS13020 4fb7ca2d6fdff83442a2fa406eeed716 312 PANTHER PTHR13903:SF4 18 312 1.7E-110 T 23-04-2016 RD1_RS13020 4fb7ca2d6fdff83442a2fa406eeed716 312 PANTHER PTHR13903 18 312 1.7E-110 T 23-04-2016 IPR012093 Pirin RD1_RS13020 4fb7ca2d6fdff83442a2fa406eeed716 312 SUPERFAMILY SSF51182 21 302 5.76E-79 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS13020 4fb7ca2d6fdff83442a2fa406eeed716 312 Pfam PF02678 Pirin 34 139 1.2E-33 T 23-04-2016 IPR003829 Pirin, N-terminal domain RD1_RS13020 4fb7ca2d6fdff83442a2fa406eeed716 312 Pfam PF05726 Pirin C-terminal cupin domain 192 290 5.3E-27 T 23-04-2016 IPR008778 Pirin, C-terminal domain RD1_RS13020 4fb7ca2d6fdff83442a2fa406eeed716 312 PIRSF PIRSF006232 16 303 1.7E-83 T 23-04-2016 IPR012093 Pirin RD1_RS09675 57c41ef6ed6b1cb9d9de2e57a97418f4 340 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 252 332 2.0E-36 T 23-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RD1_RS09675 57c41ef6ed6b1cb9d9de2e57a97418f4 340 SMART SM00382 52 187 1.8E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS09675 57c41ef6ed6b1cb9d9de2e57a97418f4 340 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 254 327 1.8E-31 T 23-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RD1_RS09675 57c41ef6ed6b1cb9d9de2e57a97418f4 340 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 340 163.612 T 23-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RD1_RS09675 57c41ef6ed6b1cb9d9de2e57a97418f4 340 SUPERFAMILY SSF46785 257 331 3.17E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS09675 57c41ef6ed6b1cb9d9de2e57a97418f4 340 Gene3D G3DSA:1.10.10.10 258 329 1.7E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS09675 57c41ef6ed6b1cb9d9de2e57a97418f4 340 PANTHER PTHR13779 15 332 2.3E-156 T 23-04-2016 RD1_RS09675 57c41ef6ed6b1cb9d9de2e57a97418f4 340 Gene3D G3DSA:1.10.8.60 184 256 3.7E-28 T 23-04-2016 RD1_RS09675 57c41ef6ed6b1cb9d9de2e57a97418f4 340 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 15 236 3.8E-107 T 23-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 RD1_RS09675 57c41ef6ed6b1cb9d9de2e57a97418f4 340 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 25 327 7.7E-130 T 23-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RD1_RS09675 57c41ef6ed6b1cb9d9de2e57a97418f4 340 SUPERFAMILY SSF52540 21 252 1.53E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09675 57c41ef6ed6b1cb9d9de2e57a97418f4 340 PANTHER PTHR13779:SF25 15 332 2.3E-156 T 23-04-2016 RD1_RS09675 57c41ef6ed6b1cb9d9de2e57a97418f4 340 Gene3D G3DSA:3.40.50.300 21 174 6.4E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17815 fc3976abe964aa32ca59b035af86d686 135 Gene3D G3DSA:1.10.260.40 14 76 2.1E-19 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS17815 fc3976abe964aa32ca59b035af86d686 135 SUPERFAMILY SSF47413 12 77 6.76E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS17815 fc3976abe964aa32ca59b035af86d686 135 SMART SM00530 18 73 3.5E-12 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS17815 fc3976abe964aa32ca59b035af86d686 135 Pfam PF01381 Helix-turn-helix 19 73 6.0E-12 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS01480 9c7c8edc52f0c4ef39d3b840cb47c286 553 PANTHER PTHR35369:SF2 197 548 1.9E-69 T 23-04-2016 RD1_RS01480 9c7c8edc52f0c4ef39d3b840cb47c286 553 PANTHER PTHR35369:SF2 5 151 1.9E-69 T 23-04-2016 RD1_RS01480 9c7c8edc52f0c4ef39d3b840cb47c286 553 Pfam PF00817 impB/mucB/samB family 10 151 3.4E-17 T 23-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01480 9c7c8edc52f0c4ef39d3b840cb47c286 553 PANTHER PTHR35369 197 548 1.9E-69 T 23-04-2016 RD1_RS01480 9c7c8edc52f0c4ef39d3b840cb47c286 553 PANTHER PTHR35369 5 151 1.9E-69 T 23-04-2016 RD1_RS01480 9c7c8edc52f0c4ef39d3b840cb47c286 553 SUPERFAMILY SSF56672 200 277 1.6E-44 T 23-04-2016 RD1_RS01480 9c7c8edc52f0c4ef39d3b840cb47c286 553 SUPERFAMILY SSF56672 4 158 1.6E-44 T 23-04-2016 RD1_RS01480 9c7c8edc52f0c4ef39d3b840cb47c286 553 Gene3D G3DSA:1.10.150.20 231 281 7.1E-4 T 23-04-2016 RD1_RS01065 2df6dc9ccc048e1e3331712d34f0f187 329 PANTHER PTHR22911:SF70 1 305 6.2E-47 T 23-04-2016 RD1_RS01065 2df6dc9ccc048e1e3331712d34f0f187 329 Pfam PF00892 EamA-like transporter family 147 277 1.7E-8 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS01065 2df6dc9ccc048e1e3331712d34f0f187 329 Pfam PF00892 EamA-like transporter family 6 138 1.6E-11 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS01065 2df6dc9ccc048e1e3331712d34f0f187 329 PANTHER PTHR22911 1 305 6.2E-47 T 23-04-2016 RD1_RS01065 2df6dc9ccc048e1e3331712d34f0f187 329 SUPERFAMILY SSF103481 185 281 5.49E-12 T 23-04-2016 RD1_RS01065 2df6dc9ccc048e1e3331712d34f0f187 329 SUPERFAMILY SSF103481 40 142 1.7E-12 T 23-04-2016 RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 SUPERFAMILY SSF46689 271 322 2.24E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 SUPERFAMILY SSF46689 219 268 1.05E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 Pfam PF12833 Helix-turn-helix domain 241 320 1.8E-23 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 Gene3D G3DSA:3.40.50.880 11 208 2.8E-30 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 SUPERFAMILY SSF52317 8 197 6.87E-32 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 PANTHER PTHR11019 13 32 1.1E-29 T 23-04-2016 RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 PANTHER PTHR11019 58 326 1.1E-29 T 23-04-2016 RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 Pfam PF01965 DJ-1/PfpI family 28 175 2.6E-6 T 23-04-2016 IPR002818 DJ-1/PfpI RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 302 318 6.6E-5 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 287 302 6.6E-5 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 Gene3D G3DSA:1.10.10.60 272 320 1.1E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 272 314 - T 23-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 SMART SM00342 235 318 4.2E-28 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 PANTHER PTHR11019:SF90 13 32 1.1E-29 T 23-04-2016 RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 PANTHER PTHR11019:SF90 58 326 1.1E-29 T 23-04-2016 RD1_RS00035 75e6ca9f9413bb23853ef5eed3aa100c 335 Gene3D G3DSA:1.10.10.60 215 271 3.0E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS00915 2bb32ab1c79a8c68687808174205d837 395 Pfam PF00155 Aminotransferase class I and II 42 384 4.7E-61 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS00915 2bb32ab1c79a8c68687808174205d837 395 Gene3D G3DSA:3.40.640.10 57 275 1.2E-83 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS00915 2bb32ab1c79a8c68687808174205d837 395 PANTHER PTHR13693 8 394 9.0E-221 T 23-04-2016 RD1_RS00915 2bb32ab1c79a8c68687808174205d837 395 SUPERFAMILY SSF53383 21 393 1.31E-107 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS00915 2bb32ab1c79a8c68687808174205d837 395 Gene3D G3DSA:3.90.1150.10 276 389 3.8E-31 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS00915 2bb32ab1c79a8c68687808174205d837 395 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 2 392 51.049 T 23-04-2016 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|UniPathway: UPA00046 RD1_RS00915 2bb32ab1c79a8c68687808174205d837 395 PANTHER PTHR13693:SF60 8 394 9.0E-221 T 23-04-2016 RD1_RS00915 2bb32ab1c79a8c68687808174205d837 395 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 8 394 1.3E-185 T 23-04-2016 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|UniPathway: UPA00046 RD1_RS07220 09418198212423eac22ed2b9b736a48c 125 PANTHER PTHR11961 22 121 6.7E-30 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07220 09418198212423eac22ed2b9b736a48c 125 Gene3D G3DSA:1.10.760.10 21 124 1.2E-40 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07220 09418198212423eac22ed2b9b736a48c 125 SUPERFAMILY SSF46626 21 124 2.23E-35 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07220 09418198212423eac22ed2b9b736a48c 125 PRINTS PR00604 Class IA and IB cytochrome C signature 62 72 1.8E-19 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07220 09418198212423eac22ed2b9b736a48c 125 PRINTS PR00604 Class IA and IB cytochrome C signature 115 123 1.8E-19 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07220 09418198212423eac22ed2b9b736a48c 125 PRINTS PR00604 Class IA and IB cytochrome C signature 46 61 1.8E-19 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07220 09418198212423eac22ed2b9b736a48c 125 PRINTS PR00604 Class IA and IB cytochrome C signature 98 108 1.8E-19 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07220 09418198212423eac22ed2b9b736a48c 125 PRINTS PR00604 Class IA and IB cytochrome C signature 79 95 1.8E-19 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07220 09418198212423eac22ed2b9b736a48c 125 PRINTS PR00604 Class IA and IB cytochrome C signature 33 40 1.8E-19 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07220 09418198212423eac22ed2b9b736a48c 125 Pfam PF00034 Cytochrome c 25 123 1.7E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07220 09418198212423eac22ed2b9b736a48c 125 PANTHER PTHR11961:SF6 22 121 6.7E-30 T 23-04-2016 RD1_RS07620 4a41ecaa5b4335d94d3d917a37fa90cd 143 Pfam PF00583 Acetyltransferase (GNAT) family 42 106 4.3E-12 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS07620 4a41ecaa5b4335d94d3d917a37fa90cd 143 Gene3D G3DSA:3.40.630.30 21 131 7.9E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS07620 4a41ecaa5b4335d94d3d917a37fa90cd 143 PANTHER PTHR23091 54 141 2.4E-17 T 23-04-2016 RD1_RS07620 4a41ecaa5b4335d94d3d917a37fa90cd 143 SUPERFAMILY SSF55729 42 133 4.63E-19 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS04315 d9f90c1d2358b664e93c7def6e862f0c 718 PANTHER PTHR32282 26 668 9.2E-175 T 23-04-2016 RD1_RS04315 d9f90c1d2358b664e93c7def6e862f0c 718 Gene3D G3DSA:1.10.3810.10 100 296 9.0E-58 T 23-04-2016 RD1_RS04315 d9f90c1d2358b664e93c7def6e862f0c 718 SUPERFAMILY SSF56601 324 672 4.66E-109 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS04315 d9f90c1d2358b664e93c7def6e862f0c 718 SUPERFAMILY SSF56601 275 297 4.66E-109 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS04315 d9f90c1d2358b664e93c7def6e862f0c 718 SUPERFAMILY SSF53955 91 317 1.83E-57 T 23-04-2016 IPR023346 Lysozyme-like domain RD1_RS04315 d9f90c1d2358b664e93c7def6e862f0c 718 Gene3D G3DSA:3.40.710.10 297 674 3.8E-108 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS04315 d9f90c1d2358b664e93c7def6e862f0c 718 Pfam PF00912 Transglycosylase 107 293 3.7E-51 T 23-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RD1_RS04315 d9f90c1d2358b664e93c7def6e862f0c 718 Pfam PF00905 Penicillin binding protein transpeptidase domain 381 651 5.3E-32 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RD1_RS04315 d9f90c1d2358b664e93c7def6e862f0c 718 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 112 656 3.9E-157 T 23-04-2016 RD1_RS04315 d9f90c1d2358b664e93c7def6e862f0c 718 PANTHER PTHR32282:SF5 26 668 9.2E-175 T 23-04-2016 RD1_RS14845 ef7e6b3562d95507216847249e2ec668 421 SUPERFAMILY SSF53300 226 358 1.23E-16 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS14845 ef7e6b3562d95507216847249e2ec668 421 Pfam PF05762 VWA domain containing CoxE-like protein 170 393 7.8E-71 T 23-04-2016 IPR008912 Uncharacterised protein family CoxE-like RD1_RS14845 ef7e6b3562d95507216847249e2ec668 421 SMART SM00327 225 394 7.7E-6 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS14845 ef7e6b3562d95507216847249e2ec668 421 PANTHER PTHR39338:SF1 1 408 4.1E-109 T 23-04-2016 RD1_RS14845 ef7e6b3562d95507216847249e2ec668 421 PANTHER PTHR39338 1 408 4.1E-109 T 23-04-2016 RD1_RS14845 ef7e6b3562d95507216847249e2ec668 421 PIRSF PIRSF010256 4 403 5.2E-127 T 23-04-2016 IPR011195 Uncharacterised conserved protein UCP010256 RD1_RS14845 ef7e6b3562d95507216847249e2ec668 421 Gene3D G3DSA:3.40.50.410 227 348 1.2E-8 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS09780 5c9f70780b3f5e53c3cd9eee86a858a5 327 PANTHER PTHR35007:SF2 11 319 1.5E-53 T 23-04-2016 RD1_RS09780 5c9f70780b3f5e53c3cd9eee86a858a5 327 PANTHER PTHR35007 11 319 1.5E-53 T 23-04-2016 RD1_RS09780 5c9f70780b3f5e53c3cd9eee86a858a5 327 Pfam PF00482 Type II secretion system (T2SS), protein F 182 310 7.5E-19 T 23-04-2016 IPR018076 Type II secretion system F domain RD1_RS17480 65c714120a821d94cead38bea6978208 239 PANTHER PTHR21091 1 223 2.0E-56 T 23-04-2016 RD1_RS17480 65c714120a821d94cead38bea6978208 239 PANTHER PTHR21091:SF16 1 223 2.0E-56 T 23-04-2016 RD1_RS17480 65c714120a821d94cead38bea6978208 239 Gene3D G3DSA:3.30.950.10 119 236 5.9E-30 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RD1_RS17480 65c714120a821d94cead38bea6978208 239 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 3 236 3.9E-69 T 23-04-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS17480 65c714120a821d94cead38bea6978208 239 SUPERFAMILY SSF53790 1 236 1.57E-64 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS17480 65c714120a821d94cead38bea6978208 239 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 8 22 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS17480 65c714120a821d94cead38bea6978208 239 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 216 7.0E-46 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS17480 65c714120a821d94cead38bea6978208 239 Gene3D G3DSA:3.40.1010.10 2 117 1.1E-35 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RD1_RS13660 8335baebe86ca9b0504f2bc32097a00b 282 Pfam PF00175 Oxidoreductase NAD-binding domain 135 250 1.4E-4 T 23-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RD1_RS13660 8335baebe86ca9b0504f2bc32097a00b 282 Pfam PF00970 Oxidoreductase FAD-binding domain 33 120 1.2E-4 T 23-04-2016 IPR008333 Oxidoreductase, FAD-binding domain RD1_RS13660 8335baebe86ca9b0504f2bc32097a00b 282 Gene3D G3DSA:2.40.30.10 22 118 3.7E-27 T 23-04-2016 RD1_RS13660 8335baebe86ca9b0504f2bc32097a00b 282 SUPERFAMILY SSF63380 22 121 4.48E-21 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RD1_RS13660 8335baebe86ca9b0504f2bc32097a00b 282 SUPERFAMILY SSF52343 125 280 6.42E-30 T 23-04-2016 RD1_RS13660 8335baebe86ca9b0504f2bc32097a00b 282 Gene3D G3DSA:3.40.50.80 119 281 1.0E-34 T 23-04-2016 RD1_RS13660 8335baebe86ca9b0504f2bc32097a00b 282 PANTHER PTHR19370:SF98 21 266 1.3E-81 T 23-04-2016 RD1_RS13660 8335baebe86ca9b0504f2bc32097a00b 282 PANTHER PTHR19370 21 266 1.3E-81 T 23-04-2016 RD1_RS11745 d24a58c53adef9176ebff153444a0953 255 Pfam PF01578 Cytochrome C assembly protein 28 196 8.5E-31 T 23-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RD1_RS11745 d24a58c53adef9176ebff153444a0953 255 PANTHER PTHR30071 16 236 1.4E-55 T 23-04-2016 RD1_RS11745 d24a58c53adef9176ebff153444a0953 255 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 56 240 1.8E-77 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS11745 d24a58c53adef9176ebff153444a0953 255 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 216 240 7.6E-57 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS11745 d24a58c53adef9176ebff153444a0953 255 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 111 131 7.6E-57 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS11745 d24a58c53adef9176ebff153444a0953 255 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 56 73 7.6E-57 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS11745 d24a58c53adef9176ebff153444a0953 255 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 167 193 7.6E-57 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS11745 d24a58c53adef9176ebff153444a0953 255 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 73 93 7.6E-57 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS11745 d24a58c53adef9176ebff153444a0953 255 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 132 152 7.6E-57 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS10075 7aaad3ec324037c3a3edddce899e2849 269 SUPERFAMILY SSF53850 1 260 9.96E-42 T 23-04-2016 RD1_RS10075 7aaad3ec324037c3a3edddce899e2849 269 Gene3D G3DSA:3.40.190.10 32 112 1.0E-20 T 23-04-2016 RD1_RS10075 7aaad3ec324037c3a3edddce899e2849 269 Gene3D G3DSA:3.40.190.10 218 259 1.0E-20 T 23-04-2016 RD1_RS10075 7aaad3ec324037c3a3edddce899e2849 269 Gene3D G3DSA:3.40.190.10 113 199 1.1E-11 T 23-04-2016 RD1_RS10075 7aaad3ec324037c3a3edddce899e2849 269 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 260 1.5E-35 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD1_RS10075 7aaad3ec324037c3a3edddce899e2849 269 PANTHER PTHR18966 26 259 6.7E-12 T 23-04-2016 RD1_RS10075 7aaad3ec324037c3a3edddce899e2849 269 SMART SM00062 34 262 2.8E-23 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD1_RS08605 ad2b63083e56129bf627e689add6cd83 241 SMART SM00382 26 204 7.3E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS08605 ad2b63083e56129bf627e689add6cd83 241 Pfam PF00005 ABC transporter 17 155 4.8E-22 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS08605 ad2b63083e56129bf627e689add6cd83 241 PANTHER PTHR24220 3 230 6.2E-63 T 23-04-2016 RD1_RS08605 ad2b63083e56129bf627e689add6cd83 241 Gene3D G3DSA:3.40.50.300 1 230 6.1E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08605 ad2b63083e56129bf627e689add6cd83 241 SUPERFAMILY SSF52540 2 228 6.89E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03960 094bdc580c05ee4601835ea59c3bcaf7 408 Gene3D G3DSA:2.40.180.10 28 167 2.5E-31 T 23-04-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 RD1_RS03960 094bdc580c05ee4601835ea59c3bcaf7 408 Gene3D G3DSA:2.40.180.10 204 406 2.5E-31 T 23-04-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 RD1_RS03960 094bdc580c05ee4601835ea59c3bcaf7 408 PANTHER PTHR36195 52 167 1.1E-13 T 23-04-2016 RD1_RS03960 094bdc580c05ee4601835ea59c3bcaf7 408 SUPERFAMILY SSF56634 225 407 1.65E-49 T 23-04-2016 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 RD1_RS03960 094bdc580c05ee4601835ea59c3bcaf7 408 SUPERFAMILY SSF56634 45 171 1.65E-49 T 23-04-2016 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 RD1_RS03960 094bdc580c05ee4601835ea59c3bcaf7 408 PANTHER PTHR36195:SF3 52 167 1.1E-13 T 23-04-2016 RD1_RS01740 f299a8391003dd55d1925ccdc1acd2fc 188 SUPERFAMILY SSF69754 1 105 6.54E-30 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RD1_RS01740 f299a8391003dd55d1925ccdc1acd2fc 188 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 100 3.1E-22 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RD1_RS01740 f299a8391003dd55d1925ccdc1acd2fc 188 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 95 1.9E-21 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RD1_RS01740 f299a8391003dd55d1925ccdc1acd2fc 188 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 130 183 2.2E-18 T 23-04-2016 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal RD1_RS01740 f299a8391003dd55d1925ccdc1acd2fc 188 PANTHER PTHR33231 1 188 1.0E-34 T 23-04-2016 RD1_RS01740 f299a8391003dd55d1925ccdc1acd2fc 188 Gene3D G3DSA:3.30.160.100 1 97 2.5E-26 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RD1_RS03135 390aaa4b480a85a47eb265c81ffbec26 225 SUPERFAMILY SSF48008 73 207 4.97E-13 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS03135 390aaa4b480a85a47eb265c81ffbec26 225 Gene3D G3DSA:1.20.120.530 72 206 4.0E-16 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS03135 390aaa4b480a85a47eb265c81ffbec26 225 PANTHER PTHR11751:SF283 1 90 5.6E-13 T 23-04-2016 RD1_RS03135 390aaa4b480a85a47eb265c81ffbec26 225 Pfam PF07729 FCD domain 74 206 1.8E-24 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS03135 390aaa4b480a85a47eb265c81ffbec26 225 PANTHER PTHR11751 1 90 5.6E-13 T 23-04-2016 RD1_RS03135 390aaa4b480a85a47eb265c81ffbec26 225 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 64 6.8E-14 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS03135 390aaa4b480a85a47eb265c81ffbec26 225 SUPERFAMILY SSF46785 5 68 2.81E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03135 390aaa4b480a85a47eb265c81ffbec26 225 SMART SM00345 6 64 6.0E-9 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS03135 390aaa4b480a85a47eb265c81ffbec26 225 SMART SM00895 74 206 1.1E-11 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS03135 390aaa4b480a85a47eb265c81ffbec26 225 Gene3D G3DSA:1.10.10.10 5 65 3.2E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS00500 3c969e3acf244a931be58041b49d4ffb 334 TIGRFAM TIGR02016 BchX: chlorophyllide reductase iron protein subunit X 37 324 1.1E-130 T 23-04-2016 IPR010246 Chlorophyllide reductase iron protein subunit X GO:0005524|GO:0015979|GO:0016628|GO:0030494|GO:0051539 KEGG: 00860+1.3.99.35|MetaCyc: PWY-5526|UniPathway: UPA00669 RD1_RS00500 3c969e3acf244a931be58041b49d4ffb 334 PANTHER PTHR13696:SF5 36 288 2.3E-68 T 23-04-2016 RD1_RS00500 3c969e3acf244a931be58041b49d4ffb 334 PRINTS PR00091 Nitrogenase component II signature 64 79 8.6E-27 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RD1_RS00500 3c969e3acf244a931be58041b49d4ffb 334 PRINTS PR00091 Nitrogenase component II signature 42 55 8.6E-27 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RD1_RS00500 3c969e3acf244a931be58041b49d4ffb 334 PRINTS PR00091 Nitrogenase component II signature 158 173 8.6E-27 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RD1_RS00500 3c969e3acf244a931be58041b49d4ffb 334 PRINTS PR00091 Nitrogenase component II signature 119 133 8.6E-27 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RD1_RS00500 3c969e3acf244a931be58041b49d4ffb 334 ProSitePatterns PS00692 NifH/frxC family signature 2. 159 172 - T 23-04-2016 IPR030655 NifH/chlL conserved site RD1_RS00500 3c969e3acf244a931be58041b49d4ffb 334 Gene3D G3DSA:3.40.50.300 37 258 5.4E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00500 3c969e3acf244a931be58041b49d4ffb 334 ProSitePatterns PS00746 NifH/frxC family signature 1. 121 133 - T 23-04-2016 IPR030655 NifH/chlL conserved site RD1_RS00500 3c969e3acf244a931be58041b49d4ffb 334 SUPERFAMILY SSF52540 36 262 3.43E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00500 3c969e3acf244a931be58041b49d4ffb 334 PANTHER PTHR13696 36 288 2.3E-68 T 23-04-2016 RD1_RS00500 3c969e3acf244a931be58041b49d4ffb 334 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 38 298 4.4E-97 T 23-04-2016 RD1_RS05725 2e4b74df77f88396e0c5027730fc7849 199 Gene3D G3DSA:3.40.50.620 14 194 3.7E-44 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS05725 2e4b74df77f88396e0c5027730fc7849 199 PANTHER PTHR39321 9 161 1.1E-31 T 23-04-2016 RD1_RS05725 2e4b74df77f88396e0c5027730fc7849 199 Pfam PF01467 Cytidylyltransferase-like 16 193 2.2E-20 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RD1_RS05725 2e4b74df77f88396e0c5027730fc7849 199 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 14 72 2.3E-7 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RD1_RS05725 2e4b74df77f88396e0c5027730fc7849 199 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 16 194 1.2E-34 T 23-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 RD1_RS05725 2e4b74df77f88396e0c5027730fc7849 199 SUPERFAMILY SSF52374 13 194 4.15E-42 T 23-04-2016 RD1_RS05725 2e4b74df77f88396e0c5027730fc7849 199 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 12 199 19.864 T 23-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 Gene3D G3DSA:1.25.60.10 23 140 2.7E-29 T 23-04-2016 RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 Pfam PF03448 MgtE intracellular N domain 46 146 1.6E-26 T 23-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 SUPERFAMILY SSF158791 22 146 1.96E-30 T 23-04-2016 RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 Gene3D G3DSA:1.10.357.20 292 462 2.4E-57 T 23-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 SMART SM00924 46 149 2.9E-35 T 23-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 PANTHER PTHR41394 22 450 2.2E-43 T 23-04-2016 RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 Pfam PF00571 CBS domain 149 208 6.7E-4 T 23-04-2016 IPR000644 CBS domain RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 Pfam PF00571 CBS domain 238 270 5.8E-5 T 23-04-2016 IPR000644 CBS domain RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 SUPERFAMILY SSF54631 148 284 2.53E-25 T 23-04-2016 RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 PANTHER PTHR41394:SF1 22 450 2.2E-43 T 23-04-2016 RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 Pfam PF01769 Divalent cation transporter 334 456 5.7E-28 T 23-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 SUPERFAMILY SSF161093 291 462 6.8E-53 T 23-04-2016 RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 TIGRFAM TIGR00400 mgtE: magnesium transporter 38 462 1.0E-97 T 23-04-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 SMART SM00116 156 211 4.9 T 23-04-2016 IPR000644 CBS domain RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 SMART SM00116 222 270 7.2E-4 T 23-04-2016 IPR000644 CBS domain RD1_RS09295 b4da4b46918bfd56c1bf50f4cdfd653e 463 Gene3D G3DSA:3.10.580.10 141 275 6.3E-18 T 23-04-2016 RD1_RS18000 2852c2b3914f4aea00d7b5575081a05a 327 Gene3D G3DSA:3.40.50.1100 68 321 2.2E-59 T 23-04-2016 RD1_RS18000 2852c2b3914f4aea00d7b5575081a05a 327 SUPERFAMILY SSF53686 4 317 4.45E-86 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS18000 2852c2b3914f4aea00d7b5575081a05a 327 PANTHER PTHR10314 1 322 3.7E-96 T 23-04-2016 RD1_RS18000 2852c2b3914f4aea00d7b5575081a05a 327 PANTHER PTHR10314:SF36 1 322 3.7E-96 T 23-04-2016 RD1_RS18000 2852c2b3914f4aea00d7b5575081a05a 327 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 15 308 6.5E-72 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS14425 a9bc36b8a316b7af5fc0c105a5895c6e 295 PANTHER PTHR22911:SF63 24 291 3.1E-53 T 23-04-2016 RD1_RS14425 a9bc36b8a316b7af5fc0c105a5895c6e 295 SUPERFAMILY SSF103481 45 146 9.29E-13 T 23-04-2016 RD1_RS14425 a9bc36b8a316b7af5fc0c105a5895c6e 295 SUPERFAMILY SSF103481 190 293 1.83E-15 T 23-04-2016 RD1_RS14425 a9bc36b8a316b7af5fc0c105a5895c6e 295 PANTHER PTHR22911 24 291 3.1E-53 T 23-04-2016 RD1_RS14425 a9bc36b8a316b7af5fc0c105a5895c6e 295 Pfam PF00892 EamA-like transporter family 10 143 6.7E-15 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS14425 a9bc36b8a316b7af5fc0c105a5895c6e 295 Pfam PF00892 EamA-like transporter family 154 289 6.7E-21 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS17855 a4b037b911de45f3cf2b7e8f5aeee7c5 233 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 177 32.736 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RD1_RS17855 a4b037b911de45f3cf2b7e8f5aeee7c5 233 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 2 164 5.3E-52 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RD1_RS17855 a4b037b911de45f3cf2b7e8f5aeee7c5 233 Gene3D G3DSA:3.40.50.1470 2 182 1.2E-66 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RD1_RS17855 a4b037b911de45f3cf2b7e8f5aeee7c5 233 PANTHER PTHR17224 2 191 2.4E-67 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RD1_RS17855 a4b037b911de45f3cf2b7e8f5aeee7c5 233 SUPERFAMILY SSF53178 2 182 2.22E-65 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RD1_RS17855 a4b037b911de45f3cf2b7e8f5aeee7c5 233 Pfam PF01195 Peptidyl-tRNA hydrolase 3 173 1.8E-51 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RD1_RS17855 a4b037b911de45f3cf2b7e8f5aeee7c5 233 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 107 117 - T 23-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RD1_RS09745 9d91489ba9f3df8ed128cd259cad4743 145 Gene3D G3DSA:3.10.129.10 8 137 9.2E-30 T 23-04-2016 IPR029069 HotDog domain RD1_RS09745 9d91489ba9f3df8ed128cd259cad4743 145 SUPERFAMILY SSF54637 11 139 2.42E-26 T 23-04-2016 IPR029069 HotDog domain RD1_RS09745 9d91489ba9f3df8ed128cd259cad4743 145 PANTHER PTHR12418:SF28 1 137 1.3E-17 T 23-04-2016 RD1_RS09745 9d91489ba9f3df8ed128cd259cad4743 145 Pfam PF03061 Thioesterase superfamily 48 120 7.6E-12 T 23-04-2016 IPR006683 Thioesterase domain RD1_RS09745 9d91489ba9f3df8ed128cd259cad4743 145 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 18 134 1.6E-13 T 23-04-2016 IPR003736 Phenylacetic acid degradation-related domain RD1_RS09745 9d91489ba9f3df8ed128cd259cad4743 145 PANTHER PTHR12418 1 137 1.3E-17 T 23-04-2016 RD1_RS00390 b0e5838b24dbe2436fdc3dd68aa9ecac 269 PANTHER PTHR26402:SF413 144 259 1.8E-21 T 23-04-2016 RD1_RS00390 b0e5838b24dbe2436fdc3dd68aa9ecac 269 Gene3D G3DSA:1.10.10.10 85 140 2.1E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS00390 b0e5838b24dbe2436fdc3dd68aa9ecac 269 PIRSF PIRSF036400 8 269 1.5E-91 T 23-04-2016 IPR014605 Signal transduction response regulator PhyR-like, alphaproteobacteria RD1_RS00390 b0e5838b24dbe2436fdc3dd68aa9ecac 269 Pfam PF00072 Response regulator receiver domain 146 254 1.8E-10 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS00390 b0e5838b24dbe2436fdc3dd68aa9ecac 269 SUPERFAMILY SSF88659 87 140 1.57E-7 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS00390 b0e5838b24dbe2436fdc3dd68aa9ecac 269 PANTHER PTHR26402 144 259 1.8E-21 T 23-04-2016 RD1_RS00390 b0e5838b24dbe2436fdc3dd68aa9ecac 269 Gene3D G3DSA:3.40.50.2300 143 259 2.8E-19 T 23-04-2016 RD1_RS00390 b0e5838b24dbe2436fdc3dd68aa9ecac 269 SUPERFAMILY SSF52172 145 259 1.42E-19 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS00390 b0e5838b24dbe2436fdc3dd68aa9ecac 269 SMART SM00448 144 255 2.5E-10 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS14685 52ef43676147e3207e28d2ed28013613 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 1.8E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14685 52ef43676147e3207e28d2ed28013613 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.8E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14685 52ef43676147e3207e28d2ed28013613 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 1.8E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14685 52ef43676147e3207e28d2ed28013613 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 1.8E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14685 52ef43676147e3207e28d2ed28013613 268 Gene3D G3DSA:3.40.50.720 8 202 3.2E-70 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS14685 52ef43676147e3207e28d2ed28013613 268 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 253 5.6E-91 T 23-04-2016 RD1_RS14685 52ef43676147e3207e28d2ed28013613 268 PANTHER PTHR24322:SF317 15 144 5.3E-58 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RD1_RS14685 52ef43676147e3207e28d2ed28013613 268 PANTHER PTHR24322:SF317 160 192 5.3E-58 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RD1_RS14685 52ef43676147e3207e28d2ed28013613 268 PIRSF PIRSF000094 3 261 8.5E-113 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RD1_RS14685 52ef43676147e3207e28d2ed28013613 268 SUPERFAMILY SSF51735 8 256 4.96E-68 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS14685 52ef43676147e3207e28d2ed28013613 268 PANTHER PTHR24322 15 144 5.3E-58 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14685 52ef43676147e3207e28d2ed28013613 268 PANTHER PTHR24322 160 192 5.3E-58 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS16090 6d9c31933aca7c02be0e143fa91a17c2 271 PIRSF PIRSF000193 8 271 1.1E-61 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RD1_RS16090 6d9c31933aca7c02be0e143fa91a17c2 271 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 162 268 3.7E-33 T 23-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RD1_RS16090 6d9c31933aca7c02be0e143fa91a17c2 271 SUPERFAMILY SSF48179 161 269 5.78E-31 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS16090 6d9c31933aca7c02be0e143fa91a17c2 271 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 11 268 9.0E-73 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RD1_RS16090 6d9c31933aca7c02be0e143fa91a17c2 271 PANTHER PTHR11645 14 270 1.2E-82 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RD1_RS16090 6d9c31933aca7c02be0e143fa91a17c2 271 PANTHER PTHR11645:SF0 14 270 1.2E-82 T 23-04-2016 RD1_RS16090 6d9c31933aca7c02be0e143fa91a17c2 271 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 9 268 25.161 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RD1_RS16090 6d9c31933aca7c02be0e143fa91a17c2 271 Gene3D G3DSA:3.40.50.720 11 159 3.2E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS16090 6d9c31933aca7c02be0e143fa91a17c2 271 SUPERFAMILY SSF51735 11 159 6.86E-28 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS16090 6d9c31933aca7c02be0e143fa91a17c2 271 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 12 98 7.6E-9 T 23-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RD1_RS16090 6d9c31933aca7c02be0e143fa91a17c2 271 Gene3D G3DSA:1.10.3730.10 161 268 2.3E-36 T 23-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RD1_RS02180 0c4669743b91d2715ca66ff9815e8590 365 PANTHER PTHR11735:SF6 1 349 4.5E-135 T 23-04-2016 RD1_RS02180 0c4669743b91d2715ca66ff9815e8590 365 SUPERFAMILY SSF53067 109 324 2.56E-41 T 23-04-2016 RD1_RS02180 0c4669743b91d2715ca66ff9815e8590 365 SUPERFAMILY SSF53067 7 131 2.01E-29 T 23-04-2016 RD1_RS02180 0c4669743b91d2715ca66ff9815e8590 365 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 7 330 5.4E-119 T 23-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RD1_RS02180 0c4669743b91d2715ca66ff9815e8590 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 280 289 1.2E-40 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RD1_RS02180 0c4669743b91d2715ca66ff9815e8590 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 84 104 1.2E-40 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RD1_RS02180 0c4669743b91d2715ca66ff9815e8590 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 138 150 1.2E-40 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RD1_RS02180 0c4669743b91d2715ca66ff9815e8590 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 8 21 1.2E-40 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RD1_RS02180 0c4669743b91d2715ca66ff9815e8590 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 161 182 1.2E-40 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RD1_RS02180 0c4669743b91d2715ca66ff9815e8590 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 105 124 1.2E-40 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RD1_RS02180 0c4669743b91d2715ca66ff9815e8590 365 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 8 323 1.1E-91 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RD1_RS02180 0c4669743b91d2715ca66ff9815e8590 365 Pfam PF00814 Glycoprotease family 31 323 3.7E-92 T 23-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RD1_RS02180 0c4669743b91d2715ca66ff9815e8590 365 Gene3D G3DSA:3.30.420.40 7 166 2.9E-41 T 23-04-2016 RD1_RS02180 0c4669743b91d2715ca66ff9815e8590 365 PANTHER PTHR11735 1 349 4.5E-135 T 23-04-2016 RD1_RS02180 0c4669743b91d2715ca66ff9815e8590 365 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 5 348 58.834 T 23-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RD1_RS19010 173996c33aca578157245f809fcc0598 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 1.6E-11 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS19010 173996c33aca578157245f809fcc0598 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 1.6E-11 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS19010 173996c33aca578157245f809fcc0598 197 SUPERFAMILY SSF46689 9 92 1.33E-19 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS19010 173996c33aca578157245f809fcc0598 197 Gene3D G3DSA:1.10.357.10 13 186 5.3E-29 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RD1_RS19010 173996c33aca578157245f809fcc0598 197 PANTHER PTHR30328 7 174 4.0E-28 T 23-04-2016 RD1_RS19010 173996c33aca578157245f809fcc0598 197 PANTHER PTHR30328:SF3 7 174 4.0E-28 T 23-04-2016 RD1_RS19010 173996c33aca578157245f809fcc0598 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 1.3E-17 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS02985 c47fa65e49acf10c75314f8dcf5b2dc8 140 Gene3D G3DSA:3.30.300.20 13 128 1.5E-27 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RD1_RS02985 c47fa65e49acf10c75314f8dcf5b2dc8 140 ProSitePatterns PS01319 Ribosome-binding factor A signature. 86 107 - T 23-04-2016 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 RD1_RS02985 c47fa65e49acf10c75314f8dcf5b2dc8 140 PANTHER PTHR33515 10 124 7.5E-23 T 23-04-2016 RD1_RS02985 c47fa65e49acf10c75314f8dcf5b2dc8 140 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 11 127 17.712 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RD1_RS02985 c47fa65e49acf10c75314f8dcf5b2dc8 140 SUPERFAMILY SSF89919 12 123 8.5E-30 T 23-04-2016 IPR023799 Ribosome-binding factor A domain RD1_RS02985 c47fa65e49acf10c75314f8dcf5b2dc8 140 Pfam PF02033 Ribosome-binding factor A 15 119 8.3E-23 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RD1_RS02985 c47fa65e49acf10c75314f8dcf5b2dc8 140 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 18 107 2.0E-35 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RD1_RS15990 1af55f6ff0670e38620192cf4b07157e 216 Gene3D G3DSA:1.10.150.240 21 83 6.9E-15 T 23-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RD1_RS15990 1af55f6ff0670e38620192cf4b07157e 216 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 186 9.4E-33 T 23-04-2016 IPR023214 HAD-like domain RD1_RS15990 1af55f6ff0670e38620192cf4b07157e 216 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 7 204 5.2E-57 T 23-04-2016 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181|UniPathway: UPA00865 RD1_RS15990 1af55f6ff0670e38620192cf4b07157e 216 PANTHER PTHR18901 7 193 3.0E-43 T 23-04-2016 RD1_RS15990 1af55f6ff0670e38620192cf4b07157e 216 SUPERFAMILY SSF56784 4 196 1.44E-49 T 23-04-2016 IPR023214 HAD-like domain RD1_RS15990 1af55f6ff0670e38620192cf4b07157e 216 Gene3D G3DSA:3.40.50.1000 2 20 2.1E-34 T 23-04-2016 IPR023214 HAD-like domain RD1_RS15990 1af55f6ff0670e38620192cf4b07157e 216 Gene3D G3DSA:3.40.50.1000 84 204 2.1E-34 T 23-04-2016 IPR023214 HAD-like domain RD1_RS15990 1af55f6ff0670e38620192cf4b07157e 216 PANTHER PTHR18901:SF14 7 193 3.0E-43 T 23-04-2016 RD1_RS15990 1af55f6ff0670e38620192cf4b07157e 216 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 105 182 2.2E-8 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS15990 1af55f6ff0670e38620192cf4b07157e 216 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 2.1E-6 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS15990 1af55f6ff0670e38620192cf4b07157e 216 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 133 149 2.1E-6 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS15990 1af55f6ff0670e38620192cf4b07157e 216 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 102 115 2.1E-6 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS12600 9b627ed8e29525693f49a4fa0ab1723e 388 ProSitePatterns PS00216 Sugar transport proteins signature 1. 52 69 - T 23-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RD1_RS12600 9b627ed8e29525693f49a4fa0ab1723e 388 SUPERFAMILY SSF103473 2 383 9.81E-49 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS12600 9b627ed8e29525693f49a4fa0ab1723e 388 Gene3D G3DSA:1.20.1250.20 197 385 2.7E-5 T 23-04-2016 RD1_RS12600 9b627ed8e29525693f49a4fa0ab1723e 388 PANTHER PTHR23502 1 381 3.1E-84 T 23-04-2016 RD1_RS12600 9b627ed8e29525693f49a4fa0ab1723e 388 PANTHER PTHR23502:SF19 1 381 3.1E-84 T 23-04-2016 RD1_RS12600 9b627ed8e29525693f49a4fa0ab1723e 388 Pfam PF07690 Major Facilitator Superfamily 2 344 1.3E-37 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS12600 9b627ed8e29525693f49a4fa0ab1723e 388 Gene3D G3DSA:1.20.1250.20 3 181 4.0E-28 T 23-04-2016 RD1_RS04185 181ecaccb5b1b5ea1ffd7a9d80e07b4f 156 SUPERFAMILY SSF47240 11 155 2.88E-37 T 23-04-2016 IPR009078 Ferritin-like superfamily RD1_RS04185 181ecaccb5b1b5ea1ffd7a9d80e07b4f 156 Gene3D G3DSA:1.20.1260.10 1 155 8.7E-46 T 23-04-2016 IPR012347 Ferritin-related RD1_RS04185 181ecaccb5b1b5ea1ffd7a9d80e07b4f 156 Pfam PF00210 Ferritin-like domain 18 155 3.4E-19 T 23-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RD1_RS04185 181ecaccb5b1b5ea1ffd7a9d80e07b4f 156 PANTHER PTHR30295 1 155 5.5E-35 T 23-04-2016 RD1_RS04185 181ecaccb5b1b5ea1ffd7a9d80e07b4f 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 62 78 6.2E-8 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RD1_RS04185 181ecaccb5b1b5ea1ffd7a9d80e07b4f 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 38 54 6.2E-8 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RD1_RS04185 181ecaccb5b1b5ea1ffd7a9d80e07b4f 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 133 151 6.2E-8 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RD1_RS04185 181ecaccb5b1b5ea1ffd7a9d80e07b4f 156 PANTHER PTHR30295:SF6 1 155 5.5E-35 T 23-04-2016 RD1_RS04185 181ecaccb5b1b5ea1ffd7a9d80e07b4f 156 PIRSF PIRSF005900 1 156 2.5E-39 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RD1_RS11850 37d3bb77d5c46501d79567df9ade4873 227 PANTHER PTHR12592:SF0 3 227 6.1E-35 T 23-04-2016 RD1_RS11850 37d3bb77d5c46501d79567df9ade4873 227 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 6 227 22.381 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RD1_RS11850 37d3bb77d5c46501d79567df9ade4873 227 SUPERFAMILY SSF64153 4 227 2.62E-49 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RD1_RS11850 37d3bb77d5c46501d79567df9ade4873 227 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 6 227 7.8E-35 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RD1_RS11850 37d3bb77d5c46501d79567df9ade4873 227 Gene3D G3DSA:3.40.50.10260 4 227 7.0E-52 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RD1_RS11850 37d3bb77d5c46501d79567df9ade4873 227 PANTHER PTHR12592 3 227 6.1E-35 T 23-04-2016 RD1_RS11850 37d3bb77d5c46501d79567df9ade4873 227 Pfam PF03853 YjeF-related protein N-terminus 27 208 2.1E-33 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RD1_RS07140 dfdf7c081cc19c811a479a2a75935939 719 SMART SM00900 82 171 6.7E-6 T 23-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 RD1_RS07140 dfdf7c081cc19c811a479a2a75935939 719 PANTHER PTHR30224 13 364 2.4E-214 T 23-04-2016 RD1_RS07140 dfdf7c081cc19c811a479a2a75935939 719 PANTHER PTHR30224 382 701 2.4E-214 T 23-04-2016 RD1_RS07140 dfdf7c081cc19c811a479a2a75935939 719 PANTHER PTHR30224:SF4 13 364 2.4E-214 T 23-04-2016 RD1_RS07140 dfdf7c081cc19c811a479a2a75935939 719 PANTHER PTHR30224:SF4 382 701 2.4E-214 T 23-04-2016 RD1_RS07140 dfdf7c081cc19c811a479a2a75935939 719 PIRSF PIRSF036354 1 717 0.0 T 23-04-2016 IPR011399 Nitrous oxide reductase expression regulator NosR GO:0003677|GO:0016020|GO:0045893 RD1_RS07140 dfdf7c081cc19c811a479a2a75935939 719 SUPERFAMILY SSF54862 609 677 1.83E-8 T 23-04-2016 RD1_RS07140 dfdf7c081cc19c811a479a2a75935939 719 SUPERFAMILY SSF54862 505 554 1.83E-8 T 23-04-2016 RD1_RS07140 dfdf7c081cc19c811a479a2a75935939 719 Pfam PF12801 4Fe-4S binding domain 594 630 1.8E-4 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS07140 dfdf7c081cc19c811a479a2a75935939 719 Pfam PF12801 4Fe-4S binding domain 493 538 2.0E-14 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS07140 dfdf7c081cc19c811a479a2a75935939 719 Gene3D G3DSA:3.30.70.20 611 694 2.1E-4 T 23-04-2016 RD1_RS03015 c82e819f94eaa1e421422018e3cb35b7 528 SMART SM00851 19 133 5.0E-56 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RD1_RS03015 c82e819f94eaa1e421422018e3cb35b7 528 Gene3D G3DSA:3.40.140.20 242 359 6.3E-50 T 23-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RD1_RS03015 c82e819f94eaa1e421422018e3cb35b7 528 PANTHER PTHR11692 5 528 3.8E-299 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RD1_RS03015 c82e819f94eaa1e421422018e3cb35b7 528 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 528 2.2E-214 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RD1_RS03015 c82e819f94eaa1e421422018e3cb35b7 528 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 528 44.334 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RD1_RS03015 c82e819f94eaa1e421422018e3cb35b7 528 Gene3D G3DSA:3.40.140.20 369 518 6.9E-58 T 23-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RD1_RS03015 c82e819f94eaa1e421422018e3cb35b7 528 Pfam PF02142 MGS-like domain 19 132 3.2E-27 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RD1_RS03015 c82e819f94eaa1e421422018e3cb35b7 528 SUPERFAMILY SSF52335 7 198 2.88E-67 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RD1_RS03015 c82e819f94eaa1e421422018e3cb35b7 528 SMART SM00798 138 453 7.0E-202 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RD1_RS03015 c82e819f94eaa1e421422018e3cb35b7 528 Pfam PF01808 AICARFT/IMPCHase bienzyme 138 452 3.1E-119 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RD1_RS03015 c82e819f94eaa1e421422018e3cb35b7 528 PIRSF PIRSF000414 1 528 3.1E-211 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RD1_RS03015 c82e819f94eaa1e421422018e3cb35b7 528 SUPERFAMILY SSF53927 213 528 1.3E-131 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RD1_RS03015 c82e819f94eaa1e421422018e3cb35b7 528 Gene3D G3DSA:3.40.50.1380 5 190 2.9E-81 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RD1_RS03015 c82e819f94eaa1e421422018e3cb35b7 528 PANTHER PTHR11692:SF2 5 528 3.8E-299 T 23-04-2016 RD1_RS00005 0adcd1c0d4db300aa46b95a93a73a2c0 457 PANTHER PTHR11730 24 81 3.2E-40 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RD1_RS00005 0adcd1c0d4db300aa46b95a93a73a2c0 457 PANTHER PTHR11730 101 431 3.2E-40 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RD1_RS00005 0adcd1c0d4db300aa46b95a93a73a2c0 457 PANTHER PTHR11730:SF6 24 81 3.2E-40 T 23-04-2016 RD1_RS00005 0adcd1c0d4db300aa46b95a93a73a2c0 457 PANTHER PTHR11730:SF6 101 431 3.2E-40 T 23-04-2016 RD1_RS00005 0adcd1c0d4db300aa46b95a93a73a2c0 457 Pfam PF00909 Ammonium Transporter Family 20 433 1.5E-51 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RD1_RS00005 0adcd1c0d4db300aa46b95a93a73a2c0 457 Gene3D G3DSA:1.10.3430.10 25 432 2.2E-69 T 23-04-2016 IPR029020 Ammonium/urea transporter RD1_RS00005 0adcd1c0d4db300aa46b95a93a73a2c0 457 SUPERFAMILY SSF111352 14 417 1.44E-64 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 Pfam PF00067 Cytochrome P450 270 363 1.4E-18 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 Pfam PF00067 Cytochrome P450 199 257 1.3E-5 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 PRINTS PR00359 B-class P450 signature 345 356 1.3E-42 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 PRINTS PR00359 B-class P450 signature 131 147 1.3E-42 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 PRINTS PR00359 B-class P450 signature 336 345 1.3E-42 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 PRINTS PR00359 B-class P450 signature 315 330 1.3E-42 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 PRINTS PR00359 B-class P450 signature 191 213 1.3E-42 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 PRINTS PR00359 B-class P450 signature 270 281 1.3E-42 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 PRINTS PR00359 B-class P450 signature 148 163 1.3E-42 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 PRINTS PR00359 B-class P450 signature 86 97 1.3E-42 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 PRINTS PR00359 B-class P450 signature 287 314 1.3E-42 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 Gene3D G3DSA:1.10.630.10 8 392 4.2E-100 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 338 347 - T 23-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 PRINTS PR00385 P450 superfamily signature 336 345 8.0E-6 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 PRINTS PR00385 P450 superfamily signature 237 254 8.0E-6 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 PRINTS PR00385 P450 superfamily signature 345 356 8.0E-6 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 PRINTS PR00385 P450 superfamily signature 270 281 8.0E-6 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 PANTHER PTHR11712 8 392 1.2E-74 T 23-04-2016 RD1_RS13625 13fd54b463f83590cfdaed127833bbc2 393 SUPERFAMILY SSF48264 9 389 2.88E-77 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS16260 3296e63f7911fb8f71f3698268cccc7a 474 Hamap MF_01347 ATP synthase subunit beta [atpB]. 3 469 57.009 T 23-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16260 3296e63f7911fb8f71f3698268cccc7a 474 Gene3D G3DSA:1.10.1140.10 355 472 1.2E-54 T 23-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16260 3296e63f7911fb8f71f3698268cccc7a 474 PIRSF PIRSF039072 1 474 5.2E-280 T 23-04-2016 RD1_RS16260 3296e63f7911fb8f71f3698268cccc7a 474 SUPERFAMILY SSF52540 78 356 6.05E-88 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16260 3296e63f7911fb8f71f3698268cccc7a 474 PANTHER PTHR15184:SF44 6 472 0.0 T 23-04-2016 RD1_RS16260 3296e63f7911fb8f71f3698268cccc7a 474 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 131 351 1.8E-60 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16260 3296e63f7911fb8f71f3698268cccc7a 474 Gene3D G3DSA:2.40.10.170 3 76 6.2E-34 T 23-04-2016 RD1_RS16260 3296e63f7911fb8f71f3698268cccc7a 474 Gene3D G3DSA:3.40.50.300 77 353 8.6E-111 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16260 3296e63f7911fb8f71f3698268cccc7a 474 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 342 351 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16260 3296e63f7911fb8f71f3698268cccc7a 474 PANTHER PTHR15184 6 472 0.0 T 23-04-2016 RD1_RS16260 3296e63f7911fb8f71f3698268cccc7a 474 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 8 73 4.8E-22 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16260 3296e63f7911fb8f71f3698268cccc7a 474 SUPERFAMILY SSF47917 354 469 3.14E-51 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16260 3296e63f7911fb8f71f3698268cccc7a 474 SUPERFAMILY SSF50615 4 76 1.91E-25 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16260 3296e63f7911fb8f71f3698268cccc7a 474 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 5 469 6.2E-253 T 23-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16260 3296e63f7911fb8f71f3698268cccc7a 474 SMART SM00382 143 328 6.7E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS10310 3b67ab88bbe06c9477e2b39b204fb02c 281 PANTHER PTHR30408:SF2 67 281 9.1E-24 T 23-04-2016 RD1_RS10310 3b67ab88bbe06c9477e2b39b204fb02c 281 SUPERFAMILY SSF116734 12 74 2.45E-11 T 23-04-2016 RD1_RS10310 3b67ab88bbe06c9477e2b39b204fb02c 281 SUPERFAMILY SSF116734 84 280 2.78E-32 T 23-04-2016 RD1_RS10310 3b67ab88bbe06c9477e2b39b204fb02c 281 PANTHER PTHR30408 67 281 9.1E-24 T 23-04-2016 RD1_RS10310 3b67ab88bbe06c9477e2b39b204fb02c 281 Pfam PF01420 Type I restriction modification DNA specificity domain 13 54 2.1E-5 T 23-04-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 RD1_RS10310 3b67ab88bbe06c9477e2b39b204fb02c 281 Pfam PF01420 Type I restriction modification DNA specificity domain 84 250 1.2E-7 T 23-04-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 RD1_RS01710 514d58a9b09e5724f96778aee8dbbe29 138 PANTHER PTHR11075 13 133 3.0E-33 T 23-04-2016 RD1_RS01710 514d58a9b09e5724f96778aee8dbbe29 138 SUPERFAMILY SSF110916 13 96 1.22E-13 T 23-04-2016 RD1_RS01710 514d58a9b09e5724f96778aee8dbbe29 138 Gene3D G3DSA:3.30.160.200 3 106 2.4E-32 T 23-04-2016 RD1_RS01710 514d58a9b09e5724f96778aee8dbbe29 138 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 20 36 - T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RD1_RS01710 514d58a9b09e5724f96778aee8dbbe29 138 Pfam PF00472 RF-1 domain 4 132 4.3E-27 T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RD1_RS13275 a9f1bbb91fcacc90f691c06c48ca90c9 495 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 359 379 - T 23-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RD1_RS13275 a9f1bbb91fcacc90f691c06c48ca90c9 495 PANTHER PTHR10196 1 489 3.0E-263 T 23-04-2016 RD1_RS13275 a9f1bbb91fcacc90f691c06c48ca90c9 495 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 447 1.0E-54 T 23-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RD1_RS13275 a9f1bbb91fcacc90f691c06c48ca90c9 495 PANTHER PTHR10196:SF44 1 489 3.0E-263 T 23-04-2016 RD1_RS13275 a9f1bbb91fcacc90f691c06c48ca90c9 495 SUPERFAMILY SSF53067 3 252 1.48E-94 T 23-04-2016 RD1_RS13275 a9f1bbb91fcacc90f691c06c48ca90c9 495 Hamap MF_00186 Glycerol kinase [glpK]. 1 495 52.893 T 23-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RD1_RS13275 a9f1bbb91fcacc90f691c06c48ca90c9 495 Gene3D G3DSA:3.30.420.40 251 493 2.1E-89 T 23-04-2016 RD1_RS13275 a9f1bbb91fcacc90f691c06c48ca90c9 495 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 3 493 3.7E-207 T 23-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RD1_RS13275 a9f1bbb91fcacc90f691c06c48ca90c9 495 PIRSF PIRSF000538 1 494 2.4E-167 T 23-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RD1_RS13275 a9f1bbb91fcacc90f691c06c48ca90c9 495 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 133 145 - T 23-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RD1_RS13275 a9f1bbb91fcacc90f691c06c48ca90c9 495 Gene3D G3DSA:3.30.420.40 2 250 1.2E-99 T 23-04-2016 RD1_RS13275 a9f1bbb91fcacc90f691c06c48ca90c9 495 SUPERFAMILY SSF53067 252 493 5.74E-74 T 23-04-2016 RD1_RS13275 a9f1bbb91fcacc90f691c06c48ca90c9 495 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 249 1.5E-76 T 23-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RD1_RS15435 ddff0ef9331350fd9fc1533118134fd0 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 24 358 23.875 T 23-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS15435 ddff0ef9331350fd9fc1533118134fd0 360 PANTHER PTHR22926:SF5 2 360 7.2E-148 T 23-04-2016 RD1_RS15435 ddff0ef9331350fd9fc1533118134fd0 360 Pfam PF00953 Glycosyl transferase family 4 99 283 3.2E-33 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS15435 ddff0ef9331350fd9fc1533118134fd0 360 PANTHER PTHR22926 2 360 7.2E-148 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS15435 ddff0ef9331350fd9fc1533118134fd0 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 1.1E-5 T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS15435 ddff0ef9331350fd9fc1533118134fd0 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 40 360 2.5E-121 T 23-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS15435 ddff0ef9331350fd9fc1533118134fd0 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS15435 ddff0ef9331350fd9fc1533118134fd0 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS08420 202f9cbeaff4f6f44d9f9ed4e62f38b7 112 Pfam PF11953 Domain of unknown function (DUF3470) 64 105 1.3E-16 T 23-04-2016 IPR022569 Ferredoxin, C-terminal RD1_RS08420 202f9cbeaff4f6f44d9f9ed4e62f38b7 112 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS08420 202f9cbeaff4f6f44d9f9ed4e62f38b7 112 SUPERFAMILY SSF54862 3 106 5.59E-24 T 23-04-2016 RD1_RS08420 202f9cbeaff4f6f44d9f9ed4e62f38b7 112 PANTHER PTHR11938:SF101 1 81 4.6E-32 T 23-04-2016 RD1_RS08420 202f9cbeaff4f6f44d9f9ed4e62f38b7 112 Gene3D G3DSA:3.30.70.20 3 83 3.2E-21 T 23-04-2016 RD1_RS08420 202f9cbeaff4f6f44d9f9ed4e62f38b7 112 PANTHER PTHR11938 1 81 4.6E-32 T 23-04-2016 RD1_RS08420 202f9cbeaff4f6f44d9f9ed4e62f38b7 112 PRINTS PR00354 7Fe ferredoxin signature 9 19 9.0E-19 T 23-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RD1_RS08420 202f9cbeaff4f6f44d9f9ed4e62f38b7 112 PRINTS PR00354 7Fe ferredoxin signature 35 52 9.0E-19 T 23-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RD1_RS08420 202f9cbeaff4f6f44d9f9ed4e62f38b7 112 PRINTS PR00354 7Fe ferredoxin signature 19 29 9.0E-19 T 23-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RD1_RS08420 202f9cbeaff4f6f44d9f9ed4e62f38b7 112 Pfam PF00037 4Fe-4S binding domain 34 56 1.3E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS16495 ca6b3cde523f949b31488ec5aa868a5d 242 SUPERFAMILY SSF52540 3 234 9.16E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16495 ca6b3cde523f949b31488ec5aa868a5d 242 PANTHER PTHR24220:SF358 4 240 1.6E-96 T 23-04-2016 RD1_RS16495 ca6b3cde523f949b31488ec5aa868a5d 242 Gene3D G3DSA:3.40.50.300 3 235 2.1E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16495 ca6b3cde523f949b31488ec5aa868a5d 242 PANTHER PTHR24220 4 240 1.6E-96 T 23-04-2016 RD1_RS16495 ca6b3cde523f949b31488ec5aa868a5d 242 Pfam PF00005 ABC transporter 19 163 2.8E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS16495 ca6b3cde523f949b31488ec5aa868a5d 242 SMART SM00382 27 212 6.7E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS02810 1065176ba43b161cc04c94a97bb0a410 695 PANTHER PTHR33303 4 683 6.1E-98 T 23-04-2016 RD1_RS02810 1065176ba43b161cc04c94a97bb0a410 695 Pfam PF13380 CoA binding domain 24 146 3.6E-13 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RD1_RS02810 1065176ba43b161cc04c94a97bb0a410 695 SUPERFAMILY SSF51735 15 148 5.66E-23 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02810 1065176ba43b161cc04c94a97bb0a410 695 SUPERFAMILY SSF52210 143 303 7.72E-26 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS02810 1065176ba43b161cc04c94a97bb0a410 695 SUPERFAMILY SSF56059 482 679 3.33E-30 T 23-04-2016 RD1_RS02810 1065176ba43b161cc04c94a97bb0a410 695 Pfam PF13549 ATP-grasp domain 479 680 4.8E-33 T 23-04-2016 RD1_RS02810 1065176ba43b161cc04c94a97bb0a410 695 Gene3D G3DSA:3.40.50.720 14 141 2.0E-19 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02810 1065176ba43b161cc04c94a97bb0a410 695 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 167 301 2.5E-26 T 23-04-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain RD1_RS02810 1065176ba43b161cc04c94a97bb0a410 695 PANTHER PTHR33303:SF3 4 683 6.1E-98 T 23-04-2016 RD1_RS02810 1065176ba43b161cc04c94a97bb0a410 695 Gene3D G3DSA:3.40.50.261 142 299 3.0E-12 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS02810 1065176ba43b161cc04c94a97bb0a410 695 SMART SM00881 20 111 3.5E-13 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RD1_RS02810 1065176ba43b161cc04c94a97bb0a410 695 SUPERFAMILY SSF52210 309 464 2.75E-24 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS11000 aab421d2889f97c030176cc56be87f48 198 PIRSF PIRSF020680 1 192 9.4E-48 T 23-04-2016 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 RD1_RS11000 aab421d2889f97c030176cc56be87f48 198 SUPERFAMILY SSF159709 16 187 4.71E-55 T 23-04-2016 RD1_RS11000 aab421d2889f97c030176cc56be87f48 198 Pfam PF05845 Bacterial phosphonate metabolism protein (PhnH) 9 186 5.3E-56 T 23-04-2016 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 RD1_RS11000 aab421d2889f97c030176cc56be87f48 198 TIGRFAM TIGR03292 PhnH_redo: phosphonate C-P lyase system protein PhnH 9 185 5.4E-48 T 23-04-2016 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 RD1_RS19370 502392e1966a9ca15d7ec68145e6039e 560 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 215 375 4.3E-45 T 23-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain RD1_RS19370 502392e1966a9ca15d7ec68145e6039e 560 SUPERFAMILY SSF142019 175 387 1.83E-69 T 23-04-2016 RD1_RS19370 502392e1966a9ca15d7ec68145e6039e 560 Gene3D G3DSA:3.10.560.10 399 431 2.5E-4 T 23-04-2016 RD1_RS19370 502392e1966a9ca15d7ec68145e6039e 560 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 497 508 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RD1_RS19370 502392e1966a9ca15d7ec68145e6039e 560 PANTHER PTHR11780 102 560 3.0E-150 T 23-04-2016 RD1_RS19370 502392e1966a9ca15d7ec68145e6039e 560 SUPERFAMILY SSF140490 484 560 1.57E-23 T 23-04-2016 RD1_RS19370 502392e1966a9ca15d7ec68145e6039e 560 Pfam PF10531 SLBB domain 400 446 1.6E-10 T 23-04-2016 IPR019554 Soluble ligand binding domain RD1_RS19370 502392e1966a9ca15d7ec68145e6039e 560 SUPERFAMILY SSF142984 397 479 1.01E-20 T 23-04-2016 RD1_RS19370 502392e1966a9ca15d7ec68145e6039e 560 SUPERFAMILY SSF52833 26 190 5.93E-39 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS19370 502392e1966a9ca15d7ec68145e6039e 560 PANTHER PTHR11780:SF10 102 560 3.0E-150 T 23-04-2016 RD1_RS19370 502392e1966a9ca15d7ec68145e6039e 560 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 34 172 7.6E-32 T 23-04-2016 RD1_RS19370 502392e1966a9ca15d7ec68145e6039e 560 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 486 560 6.0E-20 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RD1_RS19370 502392e1966a9ca15d7ec68145e6039e 560 SMART SM00928 484 529 5.2E-15 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RD1_RS19370 502392e1966a9ca15d7ec68145e6039e 560 Gene3D G3DSA:3.40.30.10 104 167 6.2E-5 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS19370 502392e1966a9ca15d7ec68145e6039e 560 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 323 338 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RD1_RS03065 7368ba7e9686feddd6228ef7f4afad0a 350 Gene3D G3DSA:3.30.360.10 142 252 2.3E-33 T 23-04-2016 RD1_RS03065 7368ba7e9686feddd6228ef7f4afad0a 350 Gene3D G3DSA:3.30.360.10 288 337 2.3E-33 T 23-04-2016 RD1_RS03065 7368ba7e9686feddd6228ef7f4afad0a 350 Gene3D G3DSA:3.40.50.720 1 141 5.5E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03065 7368ba7e9686feddd6228ef7f4afad0a 350 SUPERFAMILY SSF55347 130 259 6.54E-21 T 23-04-2016 RD1_RS03065 7368ba7e9686feddd6228ef7f4afad0a 350 SUPERFAMILY SSF51735 2 152 5.01E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03065 7368ba7e9686feddd6228ef7f4afad0a 350 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 117 1.9E-23 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RD1_RS03065 7368ba7e9686feddd6228ef7f4afad0a 350 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 138 227 4.0E-8 T 23-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS03065 7368ba7e9686feddd6228ef7f4afad0a 350 PANTHER PTHR22604 1 346 5.6E-54 T 23-04-2016 RD1_RS06825 95be273de02cdb72a3e87b029ef982f6 414 PANTHER PTHR28641:SF2 32 410 3.1E-125 T 23-04-2016 RD1_RS06825 95be273de02cdb72a3e87b029ef982f6 414 PANTHER PTHR28641 32 410 3.1E-125 T 23-04-2016 RD1_RS06825 95be273de02cdb72a3e87b029ef982f6 414 Pfam PF05292 Malonyl-CoA decarboxylase (MCD) 319 378 3.0E-19 T 23-04-2016 IPR007956 Malonyl-CoA decarboxylase GO:0006633|GO:0050080 KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|UniPathway: UPA00340 RD1_RS06825 95be273de02cdb72a3e87b029ef982f6 414 Pfam PF05292 Malonyl-CoA decarboxylase (MCD) 75 309 2.2E-102 T 23-04-2016 IPR007956 Malonyl-CoA decarboxylase GO:0006633|GO:0050080 KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|UniPathway: UPA00340 RD1_RS06265 29cc999807799fe528db113f682760ea 182 PANTHER PTHR35458 6 177 5.2E-83 T 23-04-2016 RD1_RS06265 29cc999807799fe528db113f682760ea 182 Gene3D G3DSA:3.40.50.1010 2 169 6.2E-51 T 23-04-2016 IPR029060 PIN domain-like RD1_RS06265 29cc999807799fe528db113f682760ea 182 PANTHER PTHR35458:SF1 6 177 5.2E-83 T 23-04-2016 RD1_RS06265 29cc999807799fe528db113f682760ea 182 Pfam PF01936 NYN domain 7 165 4.2E-39 T 23-04-2016 IPR021139 NYN domain, limkain-b1-type RD1_RS15690 de81792f3917bb68e7393fe48ce6c300 564 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 43 156 1.3E-11 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS15690 de81792f3917bb68e7393fe48ce6c300 564 SUPERFAMILY SSF56645 38 277 2.23E-55 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RD1_RS15690 de81792f3917bb68e7393fe48ce6c300 564 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 448 555 5.0E-14 T 23-04-2016 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain RD1_RS15690 de81792f3917bb68e7393fe48ce6c300 564 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 281 436 6.3E-28 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS15690 de81792f3917bb68e7393fe48ce6c300 564 Gene3D G3DSA:1.10.540.10 36 158 2.9E-16 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS15690 de81792f3917bb68e7393fe48ce6c300 564 Gene3D G3DSA:2.40.110.10 160 265 8.2E-24 T 23-04-2016 RD1_RS15690 de81792f3917bb68e7393fe48ce6c300 564 PANTHER PTHR10909 2 457 4.4E-172 T 23-04-2016 RD1_RS15690 de81792f3917bb68e7393fe48ce6c300 564 PANTHER PTHR10909:SF296 2 457 4.4E-172 T 23-04-2016 RD1_RS15690 de81792f3917bb68e7393fe48ce6c300 564 Gene3D G3DSA:1.20.140.10 266 441 4.5E-53 T 23-04-2016 RD1_RS15690 de81792f3917bb68e7393fe48ce6c300 564 SUPERFAMILY SSF47203 286 448 4.99E-44 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS15690 de81792f3917bb68e7393fe48ce6c300 564 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 161 269 5.6E-16 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RD1_RS15970 14f81890d1c3be44654dda3484b6586d 365 PRINTS PR00599 Methionine aminopeptidase-1 signature 314 326 2.2E-5 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RD1_RS15970 14f81890d1c3be44654dda3484b6586d 365 PRINTS PR00599 Methionine aminopeptidase-1 signature 217 233 2.2E-5 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RD1_RS15970 14f81890d1c3be44654dda3484b6586d 365 SUPERFAMILY SSF53092 1 135 1.36E-25 T 23-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal RD1_RS15970 14f81890d1c3be44654dda3484b6586d 365 SUPERFAMILY SSF55920 136 354 8.51E-47 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS15970 14f81890d1c3be44654dda3484b6586d 365 Pfam PF01321 Creatinase/Prolidase N-terminal domain 1 137 5.5E-8 T 23-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 RD1_RS15970 14f81890d1c3be44654dda3484b6586d 365 PANTHER PTHR10804 124 353 3.4E-25 T 23-04-2016 RD1_RS15970 14f81890d1c3be44654dda3484b6586d 365 Gene3D G3DSA:3.90.230.10 136 355 5.6E-41 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS15970 14f81890d1c3be44654dda3484b6586d 365 Gene3D G3DSA:3.40.350.10 1 135 8.2E-21 T 23-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RD1_RS15970 14f81890d1c3be44654dda3484b6586d 365 Pfam PF00557 Metallopeptidase family M24 146 345 1.1E-27 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS16535 5ee01acc650c19575873d7daadbb5982 304 Gene3D G3DSA:3.40.50.2300 13 136 4.5E-33 T 23-04-2016 RD1_RS16535 5ee01acc650c19575873d7daadbb5982 304 Gene3D G3DSA:1.10.10.10 242 298 8.6E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS16535 5ee01acc650c19575873d7daadbb5982 304 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 243 257 6.1E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS16535 5ee01acc650c19575873d7daadbb5982 304 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 257 273 6.1E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS16535 5ee01acc650c19575873d7daadbb5982 304 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 273 285 6.1E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS16535 5ee01acc650c19575873d7daadbb5982 304 SUPERFAMILY SSF52172 9 139 5.27E-34 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS16535 5ee01acc650c19575873d7daadbb5982 304 SMART SM00421 240 297 2.0E-20 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS16535 5ee01acc650c19575873d7daadbb5982 304 SUPERFAMILY SSF46894 230 298 1.46E-18 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RD1_RS16535 5ee01acc650c19575873d7daadbb5982 304 PANTHER PTHR26402 218 297 3.9E-50 T 23-04-2016 RD1_RS16535 5ee01acc650c19575873d7daadbb5982 304 PANTHER PTHR26402 10 142 3.9E-50 T 23-04-2016 RD1_RS16535 5ee01acc650c19575873d7daadbb5982 304 Pfam PF00196 Bacterial regulatory proteins, luxR family 243 296 5.0E-18 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS16535 5ee01acc650c19575873d7daadbb5982 304 Pfam PF00072 Response regulator receiver domain 14 124 5.4E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS16535 5ee01acc650c19575873d7daadbb5982 304 SMART SM00448 11 124 2.4E-33 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS19095 bd7eebd5d790d32da1d6257c66ac8da0 194 PIRSF PIRSF036382 1 194 3.6E-58 T 23-04-2016 IPR008327 Signal transduction response regulator, antiterminator RD1_RS19095 bd7eebd5d790d32da1d6257c66ac8da0 194 Gene3D G3DSA:3.40.50.2300 2 128 3.9E-12 T 23-04-2016 RD1_RS19095 bd7eebd5d790d32da1d6257c66ac8da0 194 Gene3D G3DSA:1.10.10.10 136 193 1.5E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS19095 bd7eebd5d790d32da1d6257c66ac8da0 194 Pfam PF03861 ANTAR domain 135 187 2.6E-21 T 23-04-2016 IPR005561 ANTAR domain GO:0003723 RD1_RS19095 bd7eebd5d790d32da1d6257c66ac8da0 194 Pfam PF00072 Response regulator receiver domain 7 115 3.7E-6 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS19095 bd7eebd5d790d32da1d6257c66ac8da0 194 PANTHER PTHR26402 5 167 3.1E-37 T 23-04-2016 RD1_RS19095 bd7eebd5d790d32da1d6257c66ac8da0 194 SUPERFAMILY SSF52172 4 187 1.01E-46 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS19095 bd7eebd5d790d32da1d6257c66ac8da0 194 SMART SM01012 132 187 2.0E-26 T 23-04-2016 IPR005561 ANTAR domain GO:0003723 RD1_RS19095 bd7eebd5d790d32da1d6257c66ac8da0 194 PANTHER PTHR26402:SF567 5 167 3.1E-37 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 Gene3D G3DSA:3.30.390.30 355 464 8.3E-25 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PANTHER PTHR22912 6 464 2.8E-169 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 173 191 1.2E-17 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.2E-17 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 1.2E-17 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 1.2E-17 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PANTHER PTHR22912:SF176 6 464 2.8E-169 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 SUPERFAMILY SSF55424 354 465 2.06E-25 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 146 1.2E-42 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 1.2E-42 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 348 369 1.2E-42 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 311 318 1.2E-42 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 435 455 1.2E-42 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.2E-42 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 413 428 1.2E-42 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 173 198 1.2E-42 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 1.2E-42 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 Gene3D G3DSA:3.50.50.60 137 339 2.7E-30 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 SUPERFAMILY SSF51905 1 56 1.8E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 SUPERFAMILY SSF51905 101 366 1.8E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 PIRSF PIRSF000350 1 468 1.5E-53 T 23-04-2016 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 355 460 1.6E-18 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 331 2.1E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS16865 422b530534431b93f56ac2d9ee98954a 485 Gene3D G3DSA:3.50.50.60 4 136 9.1E-33 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07000 ff2f25ba4deb458392dd8f67158c6073 138 PIRSF PIRSF010312 1 138 1.9E-38 T 23-04-2016 IPR016568 Sulphur oxidation, SoxY RD1_RS07000 ff2f25ba4deb458392dd8f67158c6073 138 TIGRFAM TIGR04488 SoxY_true_GGCGG: thiosulfate oxidation carrier protein SoxY 5 138 1.2E-38 T 23-04-2016 IPR016568 Sulphur oxidation, SoxY RD1_RS07000 ff2f25ba4deb458392dd8f67158c6073 138 Pfam PF13501 Sulfur oxidation protein SoxY 35 136 2.7E-29 T 23-04-2016 IPR032711 Ig-like SoxY domain RD1_RS06735 ac6e2ff4c3da1c5f1399c1f93c6aa095 246 SUPERFAMILY SSF50800 2 46 5.55E-18 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain RD1_RS06735 ac6e2ff4c3da1c5f1399c1f93c6aa095 246 SUPERFAMILY SSF50800 135 246 5.55E-18 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain RD1_RS06735 ac6e2ff4c3da1c5f1399c1f93c6aa095 246 Pfam PF03476 MOSC N-terminal beta barrel domain 1 95 7.2E-10 T 23-04-2016 IPR005303 MOSC, N-terminal beta barrel RD1_RS06735 ac6e2ff4c3da1c5f1399c1f93c6aa095 246 PANTHER PTHR14237:SF30 130 246 3.6E-12 T 23-04-2016 RD1_RS06735 ac6e2ff4c3da1c5f1399c1f93c6aa095 246 Pfam PF03473 MOSC domain 134 244 5.8E-12 T 23-04-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 RD1_RS06735 ac6e2ff4c3da1c5f1399c1f93c6aa095 246 PANTHER PTHR14237 130 246 3.6E-12 T 23-04-2016 RD1_RS18440 3eb6b483bc1b2d713591697a31b51d38 360 PANTHER PTHR24220 5 241 3.1E-127 T 23-04-2016 RD1_RS18440 3eb6b483bc1b2d713591697a31b51d38 360 Pfam PF08402 TOBE domain 271 350 1.1E-7 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS18440 3eb6b483bc1b2d713591697a31b51d38 360 PANTHER PTHR24220:SF150 5 241 3.1E-127 T 23-04-2016 RD1_RS18440 3eb6b483bc1b2d713591697a31b51d38 360 Pfam PF00005 ABC transporter 19 161 6.3E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS18440 3eb6b483bc1b2d713591697a31b51d38 360 SUPERFAMILY SSF50331 237 351 3.8E-8 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS18440 3eb6b483bc1b2d713591697a31b51d38 360 SUPERFAMILY SSF52540 4 242 2.87E-86 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18440 3eb6b483bc1b2d713591697a31b51d38 360 Gene3D G3DSA:3.40.50.300 4 233 1.4E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18440 3eb6b483bc1b2d713591697a31b51d38 360 SMART SM00382 28 211 1.2E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS18440 3eb6b483bc1b2d713591697a31b51d38 360 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS06365 b38bb0bf0085ac365dd7a2bc8527bb47 233 PANTHER PTHR26402:SF476 2 233 1.1E-104 T 23-04-2016 RD1_RS06365 b38bb0bf0085ac365dd7a2bc8527bb47 233 SMART SM00862 154 230 5.9E-20 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS06365 b38bb0bf0085ac365dd7a2bc8527bb47 233 Gene3D G3DSA:1.10.10.10 131 232 6.1E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS06365 b38bb0bf0085ac365dd7a2bc8527bb47 233 PANTHER PTHR26402 2 233 1.1E-104 T 23-04-2016 RD1_RS06365 b38bb0bf0085ac365dd7a2bc8527bb47 233 SUPERFAMILY SSF52172 2 122 3.7E-38 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS06365 b38bb0bf0085ac365dd7a2bc8527bb47 233 SMART SM00448 2 112 1.6E-39 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS06365 b38bb0bf0085ac365dd7a2bc8527bb47 233 Pfam PF00072 Response regulator receiver domain 4 113 5.7E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS06365 b38bb0bf0085ac365dd7a2bc8527bb47 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 229 6.4E-22 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS06365 b38bb0bf0085ac365dd7a2bc8527bb47 233 SUPERFAMILY SSF46894 131 231 4.54E-27 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RD1_RS06365 b38bb0bf0085ac365dd7a2bc8527bb47 233 Gene3D G3DSA:3.40.50.2300 1 120 2.0E-38 T 23-04-2016 RD1_RS17425 bdc095cbbff5445e9f90c3599351cf62 370 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 121 6.7E-24 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RD1_RS17425 bdc095cbbff5445e9f90c3599351cf62 370 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 RD1_RS17425 bdc095cbbff5445e9f90c3599351cf62 370 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3 370 1.8E-183 T 23-04-2016 IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00040+1.1.1.-|KEGG: 00051+1.1.1.-|KEGG: 00071+1.1.1.1|KEGG: 00140+1.1.1.-|KEGG: 00240+1.1.1.-|KEGG: 00253+1.1.1.-|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00362+1.1.1.-|KEGG: 00363+1.1.1.-|KEGG: 00365+1.1.1.-|KEGG: 00400+1.1.1.-|KEGG: 00520+1.1.1.-|KEGG: 00523+1.1.1.-|KEGG: 00591+1.1.1.-|KEGG: 00592+1.1.1.1|KEGG: 00620+1.1.1.28|KEGG: 00622+1.1.1.-|KEGG: 00625+1.1.1.1+1.1.1.-|KEGG: 00626+1.1.1.1|KEGG: 00633+1.1.1.-|KEGG: 00640+1.1.1.-|KEGG: 00650+1.1.1.-|KEGG: 00680+1.1.1.284+1.1.1.-|KEGG: 00720+1.1.1.-|KEGG: 00750+1.1.1.-|KEGG: 00830+1.1.1.1+1.1.1.-|KEGG: 00950+1.1.1.-|KEGG: 00966+1.1.1.-|KEGG: 00980+1.1.1.1|KEGG: 00981+1.1.1.-|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6454|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-6901|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 RD1_RS17425 bdc095cbbff5445e9f90c3599351cf62 370 Pfam PF00107 Zinc-binding dehydrogenase 198 317 3.3E-17 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RD1_RS17425 bdc095cbbff5445e9f90c3599351cf62 370 SUPERFAMILY SSF50129 1 187 1.1E-65 T 23-04-2016 IPR011032 GroES-like RD1_RS17425 bdc095cbbff5445e9f90c3599351cf62 370 Gene3D G3DSA:3.90.180.10 2 191 8.3E-60 T 23-04-2016 IPR011032 GroES-like RD1_RS17425 bdc095cbbff5445e9f90c3599351cf62 370 SUPERFAMILY SSF50129 319 370 1.6E-12 T 23-04-2016 IPR011032 GroES-like RD1_RS17425 bdc095cbbff5445e9f90c3599351cf62 370 SUPERFAMILY SSF51735 161 335 5.58E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17425 bdc095cbbff5445e9f90c3599351cf62 370 PANTHER PTHR11695:SF560 129 370 4.1E-188 T 23-04-2016 RD1_RS17425 bdc095cbbff5445e9f90c3599351cf62 370 PANTHER PTHR11695:SF560 15 108 4.1E-188 T 23-04-2016 RD1_RS17425 bdc095cbbff5445e9f90c3599351cf62 370 Gene3D G3DSA:3.40.50.720 192 310 2.2E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17425 bdc095cbbff5445e9f90c3599351cf62 370 PANTHER PTHR11695 129 370 4.1E-188 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS17425 bdc095cbbff5445e9f90c3599351cf62 370 PANTHER PTHR11695 15 108 4.1E-188 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS01895 74fd76bdb7129e2f84cadaf12096668e 610 SUPERFAMILY SSF52540 351 599 5.22E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01895 74fd76bdb7129e2f84cadaf12096668e 610 Pfam PF00664 ABC transporter transmembrane region 36 300 2.3E-20 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS01895 74fd76bdb7129e2f84cadaf12096668e 610 ProSitePatterns PS00211 ABC transporters family signature. 501 515 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS01895 74fd76bdb7129e2f84cadaf12096668e 610 SUPERFAMILY SSF90123 26 339 6.15E-47 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS01895 74fd76bdb7129e2f84cadaf12096668e 610 SMART SM00382 384 581 8.2E-19 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS01895 74fd76bdb7129e2f84cadaf12096668e 610 PANTHER PTHR24221:SF203 6 608 9.5E-223 T 23-04-2016 RD1_RS01895 74fd76bdb7129e2f84cadaf12096668e 610 Gene3D G3DSA:3.40.50.300 359 594 1.4E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01895 74fd76bdb7129e2f84cadaf12096668e 610 PANTHER PTHR24221 6 608 9.5E-223 T 23-04-2016 RD1_RS01895 74fd76bdb7129e2f84cadaf12096668e 610 Pfam PF00005 ABC transporter 376 529 1.3E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS01895 74fd76bdb7129e2f84cadaf12096668e 610 Gene3D G3DSA:1.20.1560.10 26 331 1.1E-36 T 23-04-2016 RD1_RS15230 21a263b31cc709406dd1801d1a40035e 335 Gene3D G3DSA:1.10.3720.10 108 330 2.7E-20 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS15230 21a263b31cc709406dd1801d1a40035e 335 SUPERFAMILY SSF161098 108 319 4.06E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS15230 21a263b31cc709406dd1801d1a40035e 335 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 131 334 3.9E-36 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS15230 21a263b31cc709406dd1801d1a40035e 335 PANTHER PTHR30465:SF24 1 76 5.0E-119 T 23-04-2016 RD1_RS15230 21a263b31cc709406dd1801d1a40035e 335 PANTHER PTHR30465:SF24 99 334 5.0E-119 T 23-04-2016 RD1_RS15230 21a263b31cc709406dd1801d1a40035e 335 PANTHER PTHR30465 1 76 5.0E-119 T 23-04-2016 RD1_RS15230 21a263b31cc709406dd1801d1a40035e 335 PANTHER PTHR30465 99 334 5.0E-119 T 23-04-2016 RD1_RS17670 a5f1368bc955c42d9afb935f3152ee4d 538 Pfam PF05199 GMC oxidoreductase 391 528 1.2E-42 T 23-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 RD1_RS17670 a5f1368bc955c42d9afb935f3152ee4d 538 SUPERFAMILY SSF54373 289 477 1.86E-46 T 23-04-2016 RD1_RS17670 a5f1368bc955c42d9afb935f3152ee4d 538 SUPERFAMILY SSF51905 476 537 2.3E-89 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS17670 a5f1368bc955c42d9afb935f3152ee4d 538 SUPERFAMILY SSF51905 3 287 2.3E-89 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS17670 a5f1368bc955c42d9afb935f3152ee4d 538 Pfam PF00732 GMC oxidoreductase 4 294 1.3E-87 T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS17670 a5f1368bc955c42d9afb935f3152ee4d 538 PIRSF PIRSF000137 2 538 1.5E-145 T 23-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 RD1_RS17670 a5f1368bc955c42d9afb935f3152ee4d 538 PANTHER PTHR11552 5 536 2.2E-193 T 23-04-2016 RD1_RS17670 a5f1368bc955c42d9afb935f3152ee4d 538 PANTHER PTHR11552:SF51 5 536 2.2E-193 T 23-04-2016 RD1_RS17670 a5f1368bc955c42d9afb935f3152ee4d 538 Gene3D G3DSA:3.50.50.60 2 124 9.8E-125 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS17670 a5f1368bc955c42d9afb935f3152ee4d 538 Gene3D G3DSA:3.50.50.60 186 312 9.8E-125 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS17670 a5f1368bc955c42d9afb935f3152ee4d 538 Gene3D G3DSA:3.50.50.60 470 536 9.8E-125 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS17670 a5f1368bc955c42d9afb935f3152ee4d 538 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 253 267 - T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS17670 a5f1368bc955c42d9afb935f3152ee4d 538 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 81 104 - T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS07265 032acaae1a8e72ee457ab57e49508e45 404 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 287 370 3.9E-7 T 23-04-2016 IPR023885 4Fe4S-binding SPASM domain RD1_RS07265 032acaae1a8e72ee457ab57e49508e45 404 SUPERFAMILY SSF102114 26 350 6.15E-65 T 23-04-2016 RD1_RS07265 032acaae1a8e72ee457ab57e49508e45 404 PIRSF PIRSF037420 18 388 6.8E-127 T 23-04-2016 IPR017200 Coenzyme PQQ synthesis protein E UniPathway: UPA00539 RD1_RS07265 032acaae1a8e72ee457ab57e49508e45 404 SMART SM00729 26 228 0.0013 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RD1_RS07265 032acaae1a8e72ee457ab57e49508e45 404 Pfam PF04055 Radical SAM superfamily 31 169 1.9E-21 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RD1_RS07265 032acaae1a8e72ee457ab57e49508e45 404 PANTHER PTHR11228:SF7 272 380 1.4E-74 T 23-04-2016 RD1_RS07265 032acaae1a8e72ee457ab57e49508e45 404 PANTHER PTHR11228:SF7 3 249 1.4E-74 T 23-04-2016 RD1_RS07265 032acaae1a8e72ee457ab57e49508e45 404 Pfam PF13353 4Fe-4S single cluster domain 27 115 3.1E-10 T 23-04-2016 RD1_RS07265 032acaae1a8e72ee457ab57e49508e45 404 Gene3D G3DSA:3.20.20.70 26 361 1.1E-70 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS07265 032acaae1a8e72ee457ab57e49508e45 404 TIGRFAM TIGR04051 rSAM_NirJ: heme d1 biosynthesis radical SAM protein NirJ 25 378 1.2E-184 T 23-04-2016 IPR023992 Heme D1 biosynthesis, radical SAM protein NirJ RD1_RS07265 032acaae1a8e72ee457ab57e49508e45 404 PANTHER PTHR11228 272 380 1.4E-74 T 23-04-2016 RD1_RS07265 032acaae1a8e72ee457ab57e49508e45 404 PANTHER PTHR11228 3 249 1.4E-74 T 23-04-2016 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 245 262 - T 23-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 Gene3D G3DSA:3.40.50.1480 4 224 2.3E-142 T 23-04-2016 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 Gene3D G3DSA:3.40.50.1480 383 462 2.3E-142 T 23-04-2016 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 SMART SM00996 4 461 0.0 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 223 382 1.0E-79 T 23-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 SUPERFAMILY SSF52283 3 139 7.37E-111 T 23-04-2016 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 SUPERFAMILY SSF52283 175 222 7.37E-111 T 23-04-2016 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 SUPERFAMILY SSF52283 383 462 7.37E-111 T 23-04-2016 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 Gene3D G3DSA:3.40.50.720 225 381 1.4E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 4 461 1.4E-141 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 SMART SM00997 223 382 1.8E-107 T 23-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 PANTHER PTHR23420 173 462 0.0 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 PANTHER PTHR23420 4 137 0.0 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 76 90 - T 23-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 PIRSF PIRSF001109 1 462 1.9E-183 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 1 454 46.558 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 SUPERFAMILY SSF51735 223 382 6.91E-74 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02155 d4264495c613290b0860b1ae87b0d499 462 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 5 454 1.5E-179 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RD1_RS01605 9c9796215e701823f36a3546a12f6944 136 Pfam PF06252 Protein of unknown function (DUF1018) 20 134 1.7E-21 T 23-04-2016 IPR009363 Bacteriophage Mu, Gp16 RD1_RS12430 0956bd1831edc4d57ae836eb6438f760 404 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 269 288 - T 23-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RD1_RS12430 0956bd1831edc4d57ae836eb6438f760 404 TIGRFAM TIGR00127 nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 2 402 1.5E-204 T 23-04-2016 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RD1_RS12430 0956bd1831edc4d57ae836eb6438f760 404 PIRSF PIRSF000108 1 404 4.3E-220 T 23-04-2016 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RD1_RS12430 0956bd1831edc4d57ae836eb6438f760 404 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 392 4.4E-68 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RD1_RS12430 0956bd1831edc4d57ae836eb6438f760 404 SUPERFAMILY SSF53659 2 402 4.03E-150 T 23-04-2016 RD1_RS12430 0956bd1831edc4d57ae836eb6438f760 404 SMART SM01329 9 394 4.3E-128 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RD1_RS12430 0956bd1831edc4d57ae836eb6438f760 404 Gene3D G3DSA:3.40.718.10 3 402 1.1E-172 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RD1_RS12430 0956bd1831edc4d57ae836eb6438f760 404 PANTHER PTHR11822 3 403 0.0 T 23-04-2016 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RD1_RS06870 c26b423f2b1ab1d19515d6204f5bef0a 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 287 1.6E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS06870 c26b423f2b1ab1d19515d6204f5bef0a 288 SUPERFAMILY SSF161098 53 276 4.58E-48 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS06870 c26b423f2b1ab1d19515d6204f5bef0a 288 PANTHER PTHR30193 1 286 1.3E-101 T 23-04-2016 RD1_RS06870 c26b423f2b1ab1d19515d6204f5bef0a 288 PANTHER PTHR30193:SF28 1 286 1.3E-101 T 23-04-2016 RD1_RS06870 c26b423f2b1ab1d19515d6204f5bef0a 288 Gene3D G3DSA:1.10.3720.10 5 280 5.8E-49 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00240 f7dca148750682d8bd36385c3e26b2c0 380 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 11 376 1.5E-143 T 23-04-2016 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 RD1_RS00240 f7dca148750682d8bd36385c3e26b2c0 380 SUPERFAMILY SSF51905 316 376 7.37E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00240 f7dca148750682d8bd36385c3e26b2c0 380 SUPERFAMILY SSF51905 1 177 7.37E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00240 f7dca148750682d8bd36385c3e26b2c0 380 Gene3D G3DSA:3.50.50.60 1 179 4.7E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00240 f7dca148750682d8bd36385c3e26b2c0 380 Gene3D G3DSA:3.50.50.60 310 376 4.7E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00240 f7dca148750682d8bd36385c3e26b2c0 380 Gene3D G3DSA:2.40.30.10 190 258 1.7E-4 T 23-04-2016 RD1_RS00240 f7dca148750682d8bd36385c3e26b2c0 380 Pfam PF03486 HI0933-like protein 1 370 3.3E-80 T 23-04-2016 RD1_RS00240 f7dca148750682d8bd36385c3e26b2c0 380 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 1 370 1.3E-75 T 23-04-2016 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like RD1_RS00240 f7dca148750682d8bd36385c3e26b2c0 380 PANTHER PTHR10617:SF103 1 278 5.8E-37 T 23-04-2016 RD1_RS00240 f7dca148750682d8bd36385c3e26b2c0 380 PANTHER PTHR10617:SF103 309 379 5.8E-37 T 23-04-2016 RD1_RS00240 f7dca148750682d8bd36385c3e26b2c0 380 PANTHER PTHR10617 1 278 5.8E-37 T 23-04-2016 RD1_RS00240 f7dca148750682d8bd36385c3e26b2c0 380 PANTHER PTHR10617 309 379 5.8E-37 T 23-04-2016 RD1_RS00240 f7dca148750682d8bd36385c3e26b2c0 380 SUPERFAMILY SSF160996 186 317 3.14E-13 T 23-04-2016 RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 Pfam PF02780 Transketolase, C-terminal domain 499 622 3.4E-26 T 23-04-2016 IPR033248 Transketolase, C-terminal domain RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 Gene3D G3DSA:3.40.50.970 5 193 1.2E-58 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 Gene3D G3DSA:3.40.50.970 241 300 1.2E-58 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 9 285 2.4E-108 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 PANTHER PTHR11624 22 222 3.5E-289 T 23-04-2016 IPR033247 Transketolase family RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 PANTHER PTHR11624 243 643 3.5E-289 T 23-04-2016 IPR033247 Transketolase family RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 133 152 - T 23-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 Gene3D G3DSA:3.40.50.970 301 499 1.4E-69 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 8 632 42.885 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 ProSitePatterns PS00802 Transketolase signature 2. 428 444 - T 23-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 SUPERFAMILY SSF52518 245 384 7.54E-75 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 Pfam PF02779 Transketolase, pyrimidine binding domain 322 483 2.5E-40 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 SUPERFAMILY SSF52518 6 197 7.54E-75 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 Gene3D G3DSA:3.40.50.920 500 631 1.1E-34 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 SUPERFAMILY SSF52922 495 631 2.88E-32 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 SUPERFAMILY SSF52518 320 508 1.11E-58 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 PANTHER PTHR11624:SF20 22 222 3.5E-289 T 23-04-2016 RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 PANTHER PTHR11624:SF20 243 643 3.5E-289 T 23-04-2016 RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 12 631 6.9E-231 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 ProSitePatterns PS00801 Transketolase signature 1. 34 53 - T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RD1_RS00455 f54619e0f7bbb94dcb6af89ec14e4c9f 645 SMART SM00861 322 487 5.3E-63 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RD1_RS17505 4422cc4e5e72e8e20126be073d7ab096 251 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 5 242 3.5E-72 T 23-04-2016 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 RD1_RS17505 4422cc4e5e72e8e20126be073d7ab096 251 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 4 230 9.6E-45 T 23-04-2016 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 RD1_RS17505 4422cc4e5e72e8e20126be073d7ab096 251 PANTHER PTHR36925 1 248 1.1E-68 T 23-04-2016 RD1_RS05250 fd4da2670ab674151e47a1593c4cf503 270 Pfam PF13683 Integrase core domain 186 251 1.1E-31 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS05250 fd4da2670ab674151e47a1593c4cf503 270 Pfam PF13276 HTH-like domain 30 83 2.0E-10 T 23-04-2016 IPR025948 HTH-like domain RD1_RS05250 fd4da2670ab674151e47a1593c4cf503 270 SUPERFAMILY SSF53098 95 258 2.28E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS05250 fd4da2670ab674151e47a1593c4cf503 270 PANTHER PTHR24559 19 269 3.0E-107 T 23-04-2016 RD1_RS05250 fd4da2670ab674151e47a1593c4cf503 270 PANTHER PTHR24559:SF185 19 269 3.0E-107 T 23-04-2016 RD1_RS05250 fd4da2670ab674151e47a1593c4cf503 270 Gene3D G3DSA:3.30.420.10 98 251 1.4E-42 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS15850 fd4da2670ab674151e47a1593c4cf503 270 Pfam PF13683 Integrase core domain 186 251 1.1E-31 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS15850 fd4da2670ab674151e47a1593c4cf503 270 Pfam PF13276 HTH-like domain 30 83 2.0E-10 T 23-04-2016 IPR025948 HTH-like domain RD1_RS15850 fd4da2670ab674151e47a1593c4cf503 270 SUPERFAMILY SSF53098 95 258 2.28E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS15850 fd4da2670ab674151e47a1593c4cf503 270 PANTHER PTHR24559 19 269 3.0E-107 T 23-04-2016 RD1_RS15850 fd4da2670ab674151e47a1593c4cf503 270 PANTHER PTHR24559:SF185 19 269 3.0E-107 T 23-04-2016 RD1_RS15850 fd4da2670ab674151e47a1593c4cf503 270 Gene3D G3DSA:3.30.420.10 98 251 1.4E-42 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS08555 fd4da2670ab674151e47a1593c4cf503 270 Pfam PF13683 Integrase core domain 186 251 1.1E-31 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS08555 fd4da2670ab674151e47a1593c4cf503 270 Pfam PF13276 HTH-like domain 30 83 2.0E-10 T 23-04-2016 IPR025948 HTH-like domain RD1_RS08555 fd4da2670ab674151e47a1593c4cf503 270 SUPERFAMILY SSF53098 95 258 2.28E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS08555 fd4da2670ab674151e47a1593c4cf503 270 PANTHER PTHR24559 19 269 3.0E-107 T 23-04-2016 RD1_RS08555 fd4da2670ab674151e47a1593c4cf503 270 PANTHER PTHR24559:SF185 19 269 3.0E-107 T 23-04-2016 RD1_RS08555 fd4da2670ab674151e47a1593c4cf503 270 Gene3D G3DSA:3.30.420.10 98 251 1.4E-42 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS00725 fd4da2670ab674151e47a1593c4cf503 270 Pfam PF13683 Integrase core domain 186 251 1.1E-31 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS00725 fd4da2670ab674151e47a1593c4cf503 270 Pfam PF13276 HTH-like domain 30 83 2.0E-10 T 23-04-2016 IPR025948 HTH-like domain RD1_RS00725 fd4da2670ab674151e47a1593c4cf503 270 SUPERFAMILY SSF53098 95 258 2.28E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS00725 fd4da2670ab674151e47a1593c4cf503 270 PANTHER PTHR24559 19 269 3.0E-107 T 23-04-2016 RD1_RS00725 fd4da2670ab674151e47a1593c4cf503 270 PANTHER PTHR24559:SF185 19 269 3.0E-107 T 23-04-2016 RD1_RS00725 fd4da2670ab674151e47a1593c4cf503 270 Gene3D G3DSA:3.30.420.10 98 251 1.4E-42 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS10095 25fead51861374684634d329c2879947 165 PANTHER PTHR35011 1 152 5.2E-23 T 23-04-2016 RD1_RS10095 25fead51861374684634d329c2879947 165 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 24 152 2.4E-29 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS08640 f24d9a59833408c2cfbd343e2091986e 519 Gene3D G3DSA:3.40.50.980 27 181 2.0E-29 T 23-04-2016 RD1_RS08640 f24d9a59833408c2cfbd343e2091986e 519 ProSitePatterns PS00455 Putative AMP-binding domain signature. 175 186 - T 23-04-2016 IPR020845 AMP-binding, conserved site RD1_RS08640 f24d9a59833408c2cfbd343e2091986e 519 Gene3D G3DSA:3.40.50.980 182 332 1.4E-42 T 23-04-2016 RD1_RS08640 f24d9a59833408c2cfbd343e2091986e 519 SUPERFAMILY SSF56801 27 516 1.31E-140 T 23-04-2016 RD1_RS08640 f24d9a59833408c2cfbd343e2091986e 519 PANTHER PTHR24096 3 515 8.5E-187 T 23-04-2016 RD1_RS08640 f24d9a59833408c2cfbd343e2091986e 519 Pfam PF00501 AMP-binding enzyme 28 422 2.0E-94 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RD1_RS08640 f24d9a59833408c2cfbd343e2091986e 519 Gene3D G3DSA:2.30.38.10 339 413 4.3E-29 T 23-04-2016 RD1_RS08640 f24d9a59833408c2cfbd343e2091986e 519 Pfam PF13193 AMP-binding enzyme C-terminal domain 431 507 1.2E-17 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RD1_RS08640 f24d9a59833408c2cfbd343e2091986e 519 Gene3D G3DSA:3.30.300.30 419 516 1.8E-30 T 23-04-2016 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 Pfam PF02142 MGS-like domain 1006 1092 3.7E-16 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 SUPERFAMILY SSF56059 128 413 3.71E-96 T 23-04-2016 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1101 0.0 T 23-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 PANTHER PTHR11405 3 909 0.0 T 23-04-2016 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 PANTHER PTHR11405 931 1118 0.0 T 23-04-2016 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 PANTHER PTHR11405:SF47 3 909 0.0 T 23-04-2016 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 PANTHER PTHR11405:SF47 931 1118 0.0 T 23-04-2016 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 867 874 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 310 317 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 738 752 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 Gene3D G3DSA:3.30.470.20 774 984 4.8E-74 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 Gene3D G3DSA:3.30.470.20 213 411 5.3E-71 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1117 13.205 T 23-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 Gene3D G3DSA:3.30.1490.20 715 773 3.7E-25 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1112 12.832 T 23-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 SUPERFAMILY SSF56059 702 983 2.65E-97 T 23-04-2016 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 155 347 2.4E-63 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 702 903 5.2E-33 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 SMART SM00851 1006 1092 4.6E-29 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 392 410 2.9E-63 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 2.9E-63 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 181 193 2.9E-63 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 310 339 2.9E-63 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 252 269 2.9E-63 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 217 236 2.9E-63 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 2.9E-63 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 Gene3D G3DSA:3.30.1490.20 161 212 2.9E-16 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 Gene3D G3DSA:3.40.50.20 557 691 2.6E-58 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 447 566 1.3E-39 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 Gene3D G3DSA:3.40.50.20 3 108 2.6E-43 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 SMART SM01096 444 566 3.0E-65 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 SUPERFAMILY SSF48108 408 568 3.14E-44 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 Gene3D G3DSA:1.10.1030.10 412 556 5.5E-47 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 SUPERFAMILY SSF52440 581 704 3.6E-47 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 SUPERFAMILY SSF52440 1 127 5.18E-49 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 SUPERFAMILY SSF52335 985 1118 7.33E-33 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RD1_RS16055 519159fde3e8031f1851724cd9665a15 1119 Gene3D G3DSA:3.40.50.1380 988 1118 2.5E-33 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RD1_RS13255 2c3e852f1c04c2ccafbe25c096cf7fb1 213 Gene3D G3DSA:3.20.20.70 13 210 2.9E-68 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS13255 2c3e852f1c04c2ccafbe25c096cf7fb1 213 PANTHER PTHR30246 1 208 3.8E-89 T 23-04-2016 RD1_RS13255 2c3e852f1c04c2ccafbe25c096cf7fb1 213 SUPERFAMILY SSF51569 12 209 8.97E-63 T 23-04-2016 RD1_RS13255 2c3e852f1c04c2ccafbe25c096cf7fb1 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 13 209 5.8E-70 T 23-04-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RD1_RS13255 2c3e852f1c04c2ccafbe25c096cf7fb1 213 PANTHER PTHR30246:SF0 1 208 3.8E-89 T 23-04-2016 RD1_RS13255 2c3e852f1c04c2ccafbe25c096cf7fb1 213 Pfam PF01081 KDPG and KHG aldolase 13 203 6.3E-67 T 23-04-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RD1_RS13255 2c3e852f1c04c2ccafbe25c096cf7fb1 213 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 42 51 - T 23-04-2016 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562|UniPathway: UPA00227|UniPathway: UPA00856 RD1_RS13255 2c3e852f1c04c2ccafbe25c096cf7fb1 213 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 129 142 - T 23-04-2016 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RD1_RS10285 3674d1d637f345f58c93da830e7d0666 395 SUPERFAMILY SSF56349 99 378 5.89E-58 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RD1_RS10285 3674d1d637f345f58c93da830e7d0666 395 Gene3D G3DSA:1.10.443.10 226 373 4.4E-24 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RD1_RS10285 3674d1d637f345f58c93da830e7d0666 395 Gene3D G3DSA:1.10.150.130 99 198 2.8E-21 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal RD1_RS10285 3674d1d637f345f58c93da830e7d0666 395 PANTHER PTHR30629:SF2 1 386 2.1E-99 T 23-04-2016 RD1_RS10285 3674d1d637f345f58c93da830e7d0666 395 Pfam PF13356 Domain of unknown function (DUF4102) 3 88 1.2E-20 T 23-04-2016 IPR025166 Domain of unknown function DUF4102 RD1_RS10285 3674d1d637f345f58c93da830e7d0666 395 PANTHER PTHR30629 1 386 2.1E-99 T 23-04-2016 RD1_RS10285 3674d1d637f345f58c93da830e7d0666 395 Pfam PF00589 Phage integrase family 224 371 6.3E-19 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RD1_RS11075 565a9f37f7f18957b51491222d19cf8b 361 Pfam PF00005 ABC transporter 31 172 3.3E-35 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS11075 565a9f37f7f18957b51491222d19cf8b 361 Pfam PF08402 TOBE domain 286 356 1.3E-7 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS11075 565a9f37f7f18957b51491222d19cf8b 361 PANTHER PTHR24220 16 296 1.3E-117 T 23-04-2016 RD1_RS11075 565a9f37f7f18957b51491222d19cf8b 361 PANTHER PTHR24220:SF150 16 296 1.3E-117 T 23-04-2016 RD1_RS11075 565a9f37f7f18957b51491222d19cf8b 361 SUPERFAMILY SSF52540 15 253 5.32E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11075 565a9f37f7f18957b51491222d19cf8b 361 SMART SM00382 39 222 6.4E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS11075 565a9f37f7f18957b51491222d19cf8b 361 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS11075 565a9f37f7f18957b51491222d19cf8b 361 SUPERFAMILY SSF50331 252 360 5.1E-10 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS11075 565a9f37f7f18957b51491222d19cf8b 361 Gene3D G3DSA:3.40.50.300 14 244 1.8E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01170 fd739852c1d71a99b2a083912fe1a59a 445 PANTHER PTHR15184:SF9 1 435 4.0E-153 T 23-04-2016 IPR032463 ATPase, type III secretion system, FliI GO:0016887|GO:0030257|GO:0044780 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS01170 fd739852c1d71a99b2a083912fe1a59a 445 Gene3D G3DSA:3.40.50.300 94 355 1.9E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01170 fd739852c1d71a99b2a083912fe1a59a 445 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 143 354 3.7E-63 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS01170 fd739852c1d71a99b2a083912fe1a59a 445 SUPERFAMILY SSF52540 91 359 9.56E-85 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01170 fd739852c1d71a99b2a083912fe1a59a 445 PANTHER PTHR15184 1 435 4.0E-153 T 23-04-2016 RD1_RS01170 fd739852c1d71a99b2a083912fe1a59a 445 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 6 432 8.4E-138 T 23-04-2016 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS01170 fd739852c1d71a99b2a083912fe1a59a 445 SMART SM00382 155 339 3.2E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS01170 fd739852c1d71a99b2a083912fe1a59a 445 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 345 354 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 Gene3D G3DSA:3.30.390.10 3 124 2.3E-56 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 SMART SM01193 4 134 1.2E-93 T 23-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 SMART SM01192 139 424 2.9E-214 T 23-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 PANTHER PTHR11902 1 421 1.4E-254 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 ProSitePatterns PS00164 Enolase signature. 334 347 - T 23-04-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 Gene3D G3DSA:3.20.20.120 129 423 2.5E-131 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 421 4.1E-206 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 Pfam PF03952 Enolase, N-terminal domain 4 134 1.7E-59 T 23-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 SUPERFAMILY SSF51604 139 422 1.57E-124 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 Hamap MF_00318 Enolase [eno]. 2 411 44.128 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 PIRSF PIRSF001400 1 424 2.1E-186 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 PRINTS PR00148 Enolase signature 107 123 2.4E-46 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 PRINTS PR00148 Enolase signature 161 174 2.4E-46 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 PRINTS PR00148 Enolase signature 311 322 2.4E-46 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 PRINTS PR00148 Enolase signature 37 51 2.4E-46 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 PRINTS PR00148 Enolase signature 334 348 2.4E-46 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 PRINTS PR00148 Enolase signature 363 380 2.4E-46 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 Pfam PF00113 Enolase, C-terminal TIM barrel domain 140 422 2.5E-130 T 23-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RD1_RS14445 cc13020d4e3266ed64af192593c5a3a5 424 SUPERFAMILY SSF54826 3 137 4.04E-57 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RD1_RS08180 30dbb4245c13aca3e5306bd595a2bf34 428 SMART SM00257 377 426 7.6E-6 T 23-04-2016 IPR018392 LysM domain RD1_RS08180 30dbb4245c13aca3e5306bd595a2bf34 428 Pfam PF01476 LysM domain 378 424 2.6E-7 T 23-04-2016 IPR018392 LysM domain RD1_RS08180 30dbb4245c13aca3e5306bd595a2bf34 428 Gene3D G3DSA:3.10.350.10 379 426 1.7E-6 T 23-04-2016 IPR018392 LysM domain RD1_RS08180 30dbb4245c13aca3e5306bd595a2bf34 428 PANTHER PTHR34700 379 426 1.1E-15 T 23-04-2016 RD1_RS05455 45585a21a0e880f7a1e8af281f30e5ec 366 Pfam PF00850 Histone deacetylase domain 46 326 7.4E-73 T 23-04-2016 IPR023801 Histone deacetylase domain RD1_RS05455 45585a21a0e880f7a1e8af281f30e5ec 366 Gene3D G3DSA:3.40.800.20 3 348 1.6E-90 T 23-04-2016 IPR023801 Histone deacetylase domain RD1_RS05455 45585a21a0e880f7a1e8af281f30e5ec 366 PANTHER PTHR10625 45 329 1.2E-89 T 23-04-2016 IPR000286 Histone deacetylase superfamily RD1_RS05455 45585a21a0e880f7a1e8af281f30e5ec 366 SUPERFAMILY SSF52768 1 345 1.97E-99 T 23-04-2016 RD1_RS05455 45585a21a0e880f7a1e8af281f30e5ec 366 PRINTS PR01270 Histone deacetylase superfamily signature 257 267 5.4E-15 T 23-04-2016 IPR000286 Histone deacetylase superfamily RD1_RS05455 45585a21a0e880f7a1e8af281f30e5ec 366 PRINTS PR01270 Histone deacetylase superfamily signature 172 187 5.4E-15 T 23-04-2016 IPR000286 Histone deacetylase superfamily RD1_RS05455 45585a21a0e880f7a1e8af281f30e5ec 366 PRINTS PR01270 Histone deacetylase superfamily signature 138 161 5.4E-15 T 23-04-2016 IPR000286 Histone deacetylase superfamily RD1_RS01720 2cd20440fa966ef54f16f596a9e69032 320 SMART SM00116 269 319 0.0013 T 23-04-2016 IPR000644 CBS domain RD1_RS01720 2cd20440fa966ef54f16f596a9e69032 320 SMART SM00116 207 255 0.96 T 23-04-2016 IPR000644 CBS domain RD1_RS01720 2cd20440fa966ef54f16f596a9e69032 320 PANTHER PTHR38418 7 195 1.7E-37 T 23-04-2016 RD1_RS01720 2cd20440fa966ef54f16f596a9e69032 320 PIRSF PIRSF004692 1 320 2.2E-122 T 23-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RD1_RS01720 2cd20440fa966ef54f16f596a9e69032 320 SUPERFAMILY SSF54631 259 317 4.59E-10 T 23-04-2016 RD1_RS01720 2cd20440fa966ef54f16f596a9e69032 320 Pfam PF01380 SIS domain 39 170 1.8E-27 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RD1_RS01720 2cd20440fa966ef54f16f596a9e69032 320 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 43 310 1.9E-85 T 23-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RD1_RS01720 2cd20440fa966ef54f16f596a9e69032 320 SUPERFAMILY SSF53697 5 254 5.78E-64 T 23-04-2016 RD1_RS01720 2cd20440fa966ef54f16f596a9e69032 320 Pfam PF00571 CBS domain 263 316 2.1E-9 T 23-04-2016 IPR000644 CBS domain RD1_RS01720 2cd20440fa966ef54f16f596a9e69032 320 Pfam PF00571 CBS domain 198 254 1.6E-4 T 23-04-2016 IPR000644 CBS domain RD1_RS01720 2cd20440fa966ef54f16f596a9e69032 320 Gene3D G3DSA:3.40.50.10490 9 189 1.8E-49 T 23-04-2016 RD1_RS01720 2cd20440fa966ef54f16f596a9e69032 320 Gene3D G3DSA:3.10.580.10 190 316 5.3E-32 T 23-04-2016 RD1_RS01720 2cd20440fa966ef54f16f596a9e69032 320 PANTHER PTHR38418:SF1 7 195 1.7E-37 T 23-04-2016 RD1_RS01310 37cb139937505a8602f2e9fb934a0dbb 195 Pfam PF02627 Carboxymuconolactone decarboxylase family 62 137 2.0E-10 T 23-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RD1_RS01310 37cb139937505a8602f2e9fb934a0dbb 195 Gene3D G3DSA:1.20.1290.10 74 190 2.3E-35 T 23-04-2016 IPR029032 AhpD-like RD1_RS01310 37cb139937505a8602f2e9fb934a0dbb 195 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 17 190 3.5E-60 T 23-04-2016 IPR010195 Uncharacterised peroxidase-related RD1_RS01310 37cb139937505a8602f2e9fb934a0dbb 195 PANTHER PTHR35446 1 186 4.3E-44 T 23-04-2016 RD1_RS01310 37cb139937505a8602f2e9fb934a0dbb 195 SUPERFAMILY SSF69118 11 189 3.77E-45 T 23-04-2016 IPR029032 AhpD-like RD1_RS01310 37cb139937505a8602f2e9fb934a0dbb 195 PANTHER PTHR35446:SF2 1 186 4.3E-44 T 23-04-2016 RD1_RS01310 37cb139937505a8602f2e9fb934a0dbb 195 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 73 101 1.6E-8 T 23-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RD1_RS09940 d9bcc4d101c1602dd45c1cc042869f01 201 SUPERFAMILY SSF50475 1 196 2.89E-49 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS09940 d9bcc4d101c1602dd45c1cc042869f01 201 Pfam PF01613 Flavin reductase like domain 22 164 1.1E-18 T 23-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RD1_RS09940 d9bcc4d101c1602dd45c1cc042869f01 201 PANTHER PTHR33798:SF4 1 200 9.1E-72 T 23-04-2016 RD1_RS09940 d9bcc4d101c1602dd45c1cc042869f01 201 Gene3D G3DSA:2.30.110.10 9 188 1.1E-61 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS09940 d9bcc4d101c1602dd45c1cc042869f01 201 SMART SM00903 20 173 3.6E-14 T 23-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RD1_RS09940 d9bcc4d101c1602dd45c1cc042869f01 201 PANTHER PTHR33798 1 200 9.1E-72 T 23-04-2016 RD1_RS19460 3349726e1fa521301a2bf0663dfd4ab4 227 Pfam PF01493 GXGXG motif 25 180 2.3E-12 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS19460 3349726e1fa521301a2bf0663dfd4ab4 227 SUPERFAMILY SSF69336 2 197 2.09E-43 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS19460 3349726e1fa521301a2bf0663dfd4ab4 227 PIRSF PIRSF006519 1 227 3.9E-81 T 23-04-2016 IPR012061 Glutamate synthase, large subunit domain 3 stand-alone protein RD1_RS19460 3349726e1fa521301a2bf0663dfd4ab4 227 PANTHER PTHR39673 4 196 1.1E-14 T 23-04-2016 RD1_RS19460 3349726e1fa521301a2bf0663dfd4ab4 227 Gene3D G3DSA:2.160.20.60 26 197 3.2E-33 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS17850 c6b5e39b7af5c6a96867dbe7d5979f3f 212 PANTHER PTHR33284:SF1 8 212 3.0E-51 T 23-04-2016 RD1_RS17850 c6b5e39b7af5c6a96867dbe7d5979f3f 212 Gene3D G3DSA:2.40.240.10 8 98 7.9E-28 T 23-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 RD1_RS17850 c6b5e39b7af5c6a96867dbe7d5979f3f 212 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 6 189 26.074 T 23-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RD1_RS17850 c6b5e39b7af5c6a96867dbe7d5979f3f 212 PANTHER PTHR33284 8 212 3.0E-51 T 23-04-2016 RD1_RS17850 c6b5e39b7af5c6a96867dbe7d5979f3f 212 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 8 98 3.0E-39 T 23-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RD1_RS17850 c6b5e39b7af5c6a96867dbe7d5979f3f 212 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 8 185 1.6E-39 T 23-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RD1_RS17850 c6b5e39b7af5c6a96867dbe7d5979f3f 212 Pfam PF01386 Ribosomal L25p family 8 96 1.6E-22 T 23-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RD1_RS17850 c6b5e39b7af5c6a96867dbe7d5979f3f 212 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 104 188 4.1E-22 T 23-04-2016 IPR020057 Ribosomal protein L25, beta domain RD1_RS17850 c6b5e39b7af5c6a96867dbe7d5979f3f 212 Gene3D G3DSA:2.170.120.20 103 194 9.5E-25 T 23-04-2016 IPR020057 Ribosomal protein L25, beta domain RD1_RS17850 c6b5e39b7af5c6a96867dbe7d5979f3f 212 SUPERFAMILY SSF50715 13 188 6.45E-52 T 23-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 RD1_RS20365 3549a397e3bb9c06ce5af57980170455 334 SUPERFAMILY SSF103025 2 243 1.33E-57 T 23-04-2016 RD1_RS20365 3549a397e3bb9c06ce5af57980170455 334 Gene3D G3DSA:3.30.1360.120 100 192 1.2E-22 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS20365 3549a397e3bb9c06ce5af57980170455 334 Gene3D G3DSA:3.30.70.1400 16 85 2.6E-18 T 23-04-2016 RD1_RS20365 3549a397e3bb9c06ce5af57980170455 334 Pfam PF01571 Aminomethyltransferase folate-binding domain 1 211 8.0E-53 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS20365 3549a397e3bb9c06ce5af57980170455 334 Gene3D G3DSA:2.40.30.110 250 317 2.6E-12 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS20365 3549a397e3bb9c06ce5af57980170455 334 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 236 321 1.4E-9 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS20365 3549a397e3bb9c06ce5af57980170455 334 SUPERFAMILY SSF101790 250 331 2.62E-14 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RD1_RS20365 3549a397e3bb9c06ce5af57980170455 334 PIRSF PIRSF006487 1 334 8.0E-87 T 23-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS01340 428c4b4db0f59609378d21756c084a68 249 Pfam PF00106 short chain dehydrogenase 6 194 1.4E-55 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01340 428c4b4db0f59609378d21756c084a68 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 2.3E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01340 428c4b4db0f59609378d21756c084a68 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 2.3E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01340 428c4b4db0f59609378d21756c084a68 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.3E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01340 428c4b4db0f59609378d21756c084a68 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 172 0.003 T 23-04-2016 RD1_RS01340 428c4b4db0f59609378d21756c084a68 249 PANTHER PTHR24322 10 136 1.3E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01340 428c4b4db0f59609378d21756c084a68 249 PANTHER PTHR24322 152 183 1.3E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01340 428c4b4db0f59609378d21756c084a68 249 Gene3D G3DSA:3.40.50.720 2 236 4.7E-68 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS01340 428c4b4db0f59609378d21756c084a68 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 9.5E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01340 428c4b4db0f59609378d21756c084a68 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 9.5E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01340 428c4b4db0f59609378d21756c084a68 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 9.5E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01340 428c4b4db0f59609378d21756c084a68 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 9.5E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01340 428c4b4db0f59609378d21756c084a68 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 9.5E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01340 428c4b4db0f59609378d21756c084a68 249 SUPERFAMILY SSF51735 1 233 2.12E-66 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS12205 b31160d6cf10fea0e44036885156c7e4 291 Gene3D G3DSA:1.10.286.20 194 236 1.6E-17 T 23-04-2016 RD1_RS12205 b31160d6cf10fea0e44036885156c7e4 291 SUPERFAMILY SSF54713 56 140 7.85E-20 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RD1_RS12205 b31160d6cf10fea0e44036885156c7e4 291 SUPERFAMILY SSF46934 3 54 3.25E-19 T 23-04-2016 IPR009060 UBA-like GO:0005515 RD1_RS12205 b31160d6cf10fea0e44036885156c7e4 291 Gene3D G3DSA:1.10.8.10 1 54 1.3E-27 T 23-04-2016 RD1_RS12205 b31160d6cf10fea0e44036885156c7e4 291 Hamap MF_00050 Elongation factor Ts [tsf]. 1 289 77.208 T 23-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RD1_RS12205 b31160d6cf10fea0e44036885156c7e4 291 Pfam PF00889 Elongation factor TS 70 272 1.3E-65 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RD1_RS12205 b31160d6cf10fea0e44036885156c7e4 291 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 290 4.4E-94 T 23-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RD1_RS12205 b31160d6cf10fea0e44036885156c7e4 291 PANTHER PTHR11741 1 291 1.4E-126 T 23-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RD1_RS12205 b31160d6cf10fea0e44036885156c7e4 291 Gene3D G3DSA:3.30.479.20 237 275 1.6E-27 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RD1_RS12205 b31160d6cf10fea0e44036885156c7e4 291 Gene3D G3DSA:3.30.479.20 176 191 1.6E-27 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RD1_RS12205 b31160d6cf10fea0e44036885156c7e4 291 Gene3D G3DSA:3.30.479.20 56 92 1.6E-27 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RD1_RS12205 b31160d6cf10fea0e44036885156c7e4 291 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 23-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 RD1_RS12205 b31160d6cf10fea0e44036885156c7e4 291 SUPERFAMILY SSF54713 145 290 7.72E-49 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RD1_RS09460 aced3087c58db8ba67a0d628de4571fc 227 Pfam PF00308 Bacterial dnaA protein 90 199 4.0E-5 T 23-04-2016 IPR013317 Chromosomal replication initiator protein DnaA RD1_RS09460 aced3087c58db8ba67a0d628de4571fc 227 PANTHER PTHR30050:SF5 1 220 1.9E-34 T 23-04-2016 RD1_RS09460 aced3087c58db8ba67a0d628de4571fc 227 SUPERFAMILY SSF52540 38 196 8.08E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09460 aced3087c58db8ba67a0d628de4571fc 227 Gene3D G3DSA:1.10.8.60 158 219 8.5E-9 T 23-04-2016 RD1_RS09460 aced3087c58db8ba67a0d628de4571fc 227 Gene3D G3DSA:3.40.50.300 2 150 4.8E-21 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09460 aced3087c58db8ba67a0d628de4571fc 227 PANTHER PTHR30050 1 220 1.9E-34 T 23-04-2016 RD1_RS18635 d88fbbeddab1f7627ee5de353dec54c1 306 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 284 5.5E-38 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS18635 d88fbbeddab1f7627ee5de353dec54c1 306 PANTHER PTHR32196:SF33 1 305 1.1E-103 T 23-04-2016 RD1_RS18635 d88fbbeddab1f7627ee5de353dec54c1 306 PANTHER PTHR32196 1 305 1.1E-103 T 23-04-2016 RD1_RS14270 0cc30c8d2bbeb705a94e17b8883f7f66 444 Gene3D G3DSA:3.50.50.60 240 378 5.5E-32 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS14270 0cc30c8d2bbeb705a94e17b8883f7f66 444 Gene3D G3DSA:3.40.50.720 223 239 1.8E-19 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS14270 0cc30c8d2bbeb705a94e17b8883f7f66 444 Gene3D G3DSA:3.40.50.720 137 174 1.8E-19 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS14270 0cc30c8d2bbeb705a94e17b8883f7f66 444 SUPERFAMILY SSF46548 5 152 4.81E-33 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RD1_RS14270 0cc30c8d2bbeb705a94e17b8883f7f66 444 PANTHER PTHR11938 1 385 3.2E-79 T 23-04-2016 RD1_RS14270 0cc30c8d2bbeb705a94e17b8883f7f66 444 SUPERFAMILY SSF51971 140 380 6.47E-52 T 23-04-2016 RD1_RS14270 0cc30c8d2bbeb705a94e17b8883f7f66 444 Gene3D G3DSA:3.50.50.60 379 437 7.5E-4 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS14270 0cc30c8d2bbeb705a94e17b8883f7f66 444 PRINTS PR00419 Adrenodoxin reductase family signature 143 165 1.4E-15 T 23-04-2016 RD1_RS14270 0cc30c8d2bbeb705a94e17b8883f7f66 444 PRINTS PR00419 Adrenodoxin reductase family signature 166 179 1.4E-15 T 23-04-2016 RD1_RS14270 0cc30c8d2bbeb705a94e17b8883f7f66 444 PRINTS PR00419 Adrenodoxin reductase family signature 278 292 1.4E-15 T 23-04-2016 RD1_RS14270 0cc30c8d2bbeb705a94e17b8883f7f66 444 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 21 129 2.7E-35 T 23-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II RD1_RS14270 0cc30c8d2bbeb705a94e17b8883f7f66 444 PANTHER PTHR11938:SF108 1 385 3.2E-79 T 23-04-2016 RD1_RS14270 0cc30c8d2bbeb705a94e17b8883f7f66 444 Gene3D G3DSA:1.10.1060.10 9 136 2.8E-37 T 23-04-2016 RD1_RS14270 0cc30c8d2bbeb705a94e17b8883f7f66 444 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 142 429 6.1E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 182 203 - T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 PANTHER PTHR11728 1 320 4.1E-93 T 23-04-2016 RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 SUPERFAMILY SSF48179 173 320 7.48E-43 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 PIRSF PIRSF000114 1 320 2.9E-84 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 174 309 2.3E-38 T 23-04-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 Gene3D G3DSA:3.40.50.720 1 171 2.7E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2 153 9.2E-38 T 23-04-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 Gene3D G3DSA:1.10.1040.10 174 315 6.9E-42 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 PANTHER PTHR11728:SF1 1 320 4.1E-93 T 23-04-2016 RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 167 191 4.5E-31 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 192 216 4.5E-31 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 127 147 4.5E-31 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 232 249 4.5E-31 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 53 80 4.5E-31 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 5 22 4.5E-31 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 SUPERFAMILY SSF51735 1 174 5.5E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02175 b7d156a2e48fd80cda79c6db64f14161 320 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 1 311 31.255 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RD1_RS11265 3c3efb205d5cc3e6ea17e662c4f3a2e0 539 PANTHER PTHR18968 1 533 2.3E-161 T 23-04-2016 RD1_RS11265 3c3efb205d5cc3e6ea17e662c4f3a2e0 539 SUPERFAMILY SSF52518 358 531 3.13E-42 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS11265 3c3efb205d5cc3e6ea17e662c4f3a2e0 539 SUPERFAMILY SSF52467 154 333 4.5E-33 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS11265 3c3efb205d5cc3e6ea17e662c4f3a2e0 539 Gene3D G3DSA:3.40.50.970 342 531 2.0E-44 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS11265 3c3efb205d5cc3e6ea17e662c4f3a2e0 539 PANTHER PTHR18968:SF129 1 533 2.3E-161 T 23-04-2016 RD1_RS11265 3c3efb205d5cc3e6ea17e662c4f3a2e0 539 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 380 516 1.1E-27 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RD1_RS11265 3c3efb205d5cc3e6ea17e662c4f3a2e0 539 SUPERFAMILY SSF52518 1 175 9.51E-45 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS11265 3c3efb205d5cc3e6ea17e662c4f3a2e0 539 Gene3D G3DSA:3.40.50.970 1 175 5.5E-60 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS11265 3c3efb205d5cc3e6ea17e662c4f3a2e0 539 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 189 321 6.3E-25 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RD1_RS11265 3c3efb205d5cc3e6ea17e662c4f3a2e0 539 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 169 1.7E-52 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RD1_RS11265 3c3efb205d5cc3e6ea17e662c4f3a2e0 539 Gene3D G3DSA:3.40.50.1220 181 331 3.4E-32 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS06830 3edaed8c4f03ff1a6439e7efb52f164d 438 PANTHER PTHR33362 15 436 3.0E-134 T 23-04-2016 RD1_RS06830 3edaed8c4f03ff1a6439e7efb52f164d 438 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 15 424 1.5E-95 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS06830 3edaed8c4f03ff1a6439e7efb52f164d 438 PIRSF PIRSF006066 6 436 6.8E-102 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS06830 3edaed8c4f03ff1a6439e7efb52f164d 438 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 430 3.0E-109 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS06830 3edaed8c4f03ff1a6439e7efb52f164d 438 PANTHER PTHR33362:SF6 15 436 3.0E-134 T 23-04-2016 RD1_RS18545 7e5a0d61d0f21e82c225f7b361f40dcb 1067 SUPERFAMILY SSF52540 472 534 6.62E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18545 7e5a0d61d0f21e82c225f7b361f40dcb 1067 SUPERFAMILY SSF52540 236 444 6.62E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18545 7e5a0d61d0f21e82c225f7b361f40dcb 1067 SMART SM00487 278 509 1.7E-7 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD1_RS18545 7e5a0d61d0f21e82c225f7b361f40dcb 1067 PANTHER PTHR30195:SF13 462 789 1.5E-139 T 23-04-2016 RD1_RS18545 7e5a0d61d0f21e82c225f7b361f40dcb 1067 PANTHER PTHR30195:SF13 7 434 1.5E-139 T 23-04-2016 RD1_RS18545 7e5a0d61d0f21e82c225f7b361f40dcb 1067 Pfam PF04851 Type III restriction enzyme, res subunit 282 484 3.2E-14 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RD1_RS18545 7e5a0d61d0f21e82c225f7b361f40dcb 1067 PANTHER PTHR30195 462 789 1.5E-139 T 23-04-2016 RD1_RS18545 7e5a0d61d0f21e82c225f7b361f40dcb 1067 PANTHER PTHR30195 7 434 1.5E-139 T 23-04-2016 RD1_RS18545 7e5a0d61d0f21e82c225f7b361f40dcb 1067 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 7 211 2.9E-12 T 23-04-2016 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 RD1_RS18545 7e5a0d61d0f21e82c225f7b361f40dcb 1067 Gene3D G3DSA:3.40.50.300 279 486 1.9E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13175 fc4f3a1495eff196c78ee1bff5ab44f7 419 Pfam PF01547 Bacterial extracellular solute-binding protein 42 331 2.2E-33 T 23-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 RD1_RS13175 fc4f3a1495eff196c78ee1bff5ab44f7 419 Gene3D G3DSA:3.40.190.10 38 154 2.8E-16 T 23-04-2016 RD1_RS13175 fc4f3a1495eff196c78ee1bff5ab44f7 419 SUPERFAMILY SSF53850 37 418 1.33E-61 T 23-04-2016 RD1_RS13175 fc4f3a1495eff196c78ee1bff5ab44f7 419 PANTHER PTHR30061 1 419 3.5E-40 T 23-04-2016 RD1_RS13175 fc4f3a1495eff196c78ee1bff5ab44f7 419 Gene3D G3DSA:3.40.190.10 155 350 2.1E-30 T 23-04-2016 RD1_RS16965 c6de62a55540dafa1f8ac6fe1681b8f7 466 PANTHER PTHR11014 288 461 4.1E-83 T 23-04-2016 RD1_RS16965 c6de62a55540dafa1f8ac6fe1681b8f7 466 PANTHER PTHR11014 14 252 4.1E-83 T 23-04-2016 RD1_RS16965 c6de62a55540dafa1f8ac6fe1681b8f7 466 SUPERFAMILY SSF53187 371 456 9.88E-44 T 23-04-2016 RD1_RS16965 c6de62a55540dafa1f8ac6fe1681b8f7 466 SUPERFAMILY SSF53187 14 206 9.88E-44 T 23-04-2016 RD1_RS16965 c6de62a55540dafa1f8ac6fe1681b8f7 466 Gene3D G3DSA:3.40.630.10 396 457 1.4E-44 T 23-04-2016 RD1_RS16965 c6de62a55540dafa1f8ac6fe1681b8f7 466 Gene3D G3DSA:3.40.630.10 17 215 1.4E-44 T 23-04-2016 RD1_RS16965 c6de62a55540dafa1f8ac6fe1681b8f7 466 PANTHER PTHR11014:SF72 288 461 4.1E-83 T 23-04-2016 RD1_RS16965 c6de62a55540dafa1f8ac6fe1681b8f7 466 PANTHER PTHR11014:SF72 14 252 4.1E-83 T 23-04-2016 RD1_RS16965 c6de62a55540dafa1f8ac6fe1681b8f7 466 Pfam PF01546 Peptidase family M20/M25/M40 91 452 1.1E-20 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RD1_RS16965 c6de62a55540dafa1f8ac6fe1681b8f7 466 Gene3D G3DSA:3.30.70.360 216 360 8.0E-33 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS16965 c6de62a55540dafa1f8ac6fe1681b8f7 466 Pfam PF07687 Peptidase dimerisation domain 204 357 5.0E-6 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 PRINTS PR00409 Phthalate dioxygenase reductase family signature 864 883 3.3E-27 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 PRINTS PR00409 Phthalate dioxygenase reductase family signature 842 856 3.3E-27 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 PRINTS PR00409 Phthalate dioxygenase reductase family signature 941 949 3.3E-27 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 PRINTS PR00409 Phthalate dioxygenase reductase family signature 792 804 3.3E-27 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 PRINTS PR00409 Phthalate dioxygenase reductase family signature 804 818 3.3E-27 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 PRINTS PR00409 Phthalate dioxygenase reductase family signature 828 842 3.3E-27 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 PRINTS PR00409 Phthalate dioxygenase reductase family signature 889 898 3.3E-27 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 PRINTS PR00409 Phthalate dioxygenase reductase family signature 782 792 3.3E-27 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 Gene3D G3DSA:3.40.50.80 858 969 3.0E-20 T 23-04-2016 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 Gene3D G3DSA:2.40.30.10 755 853 3.4E-27 T 23-04-2016 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 PANTHER PTHR22924:SF20 759 1026 1.4E-47 T 23-04-2016 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 SUPERFAMILY SSF54292 964 1062 1.06E-18 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 SUPERFAMILY SSF54862 550 635 4.77E-13 T 23-04-2016 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 Gene3D G3DSA:3.30.70.20 558 617 8.6E-9 T 23-04-2016 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 1019 1027 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 PANTHER PTHR22924 759 1026 1.4E-47 T 23-04-2016 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 Pfam PF13484 4Fe-4S double cluster binding domain 557 617 1.5E-7 T 23-04-2016 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 993 1059 3.2E-7 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 Pfam PF13486 Reductive dehalogenase subunit 442 544 3.5E-7 T 23-04-2016 IPR028894 Reductive dehalogenase domain KEGG: 00625+3.8.1.-|KEGG: 00791+3.8.1.- RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 SUPERFAMILY SSF52343 850 978 2.62E-23 T 23-04-2016 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 SUPERFAMILY SSF63380 756 852 3.89E-22 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 Gene3D G3DSA:3.10.20.30 970 1062 4.9E-17 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS18755 18cd24c3ed5ace5f495704959beb1777 1070 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 558 569 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS16925 a9f931dddc83a507fc73c8688298818b 556 PANTHER PTHR12216:SF3 9 553 0.0 T 23-04-2016 RD1_RS16925 a9f931dddc83a507fc73c8688298818b 556 SUPERFAMILY SSF111326 7 552 1.44E-253 T 23-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RD1_RS16925 a9f931dddc83a507fc73c8688298818b 556 Gene3D G3DSA:3.40.50.10730 141 348 2.0E-94 T 23-04-2016 RD1_RS16925 a9f931dddc83a507fc73c8688298818b 556 TIGRFAM TIGR01228 hutU: urocanate hydratase 10 551 2.6E-284 T 23-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RD1_RS16925 a9f931dddc83a507fc73c8688298818b 556 PANTHER PTHR12216 9 553 0.0 T 23-04-2016 RD1_RS16925 a9f931dddc83a507fc73c8688298818b 556 Pfam PF01175 Urocanase 14 545 7.2E-253 T 23-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RD1_RS16925 a9f931dddc83a507fc73c8688298818b 556 Hamap MF_00577 Urocanate hydratase [hutU]. 2 554 48.771 T 23-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RD1_RS16925 a9f931dddc83a507fc73c8688298818b 556 Gene3D G3DSA:3.40.1770.10 359 551 8.2E-156 T 23-04-2016 RD1_RS16925 a9f931dddc83a507fc73c8688298818b 556 Gene3D G3DSA:3.40.1770.10 9 140 8.2E-156 T 23-04-2016 RD1_RS16925 a9f931dddc83a507fc73c8688298818b 556 ProSitePatterns PS01233 Urocanase signature. 440 455 - T 23-04-2016 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RD1_RS16925 a9f931dddc83a507fc73c8688298818b 556 PIRSF PIRSF001423 2 555 3.1E-284 T 23-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 1.3E-92 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 1.3E-92 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 1.3E-92 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 1.3E-92 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 1.3E-92 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 1.3E-92 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 1.3E-92 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 1.3E-92 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 Pfam PF01578 Cytochrome C assembly protein 89 297 7.8E-53 T 23-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 636 2.4E-114 T 23-04-2016 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PANTHER PTHR30009:SF0 1 417 1.6E-246 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PANTHER PTHR30009:SF0 471 654 1.6E-246 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PANTHER PTHR30009 1 417 1.6E-246 T 23-04-2016 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PANTHER PTHR30009 471 654 1.6E-246 T 23-04-2016 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 639 2.9E-191 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 1.9E-59 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 1.9E-59 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 1.9E-59 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 1.9E-59 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 1.9E-59 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 629 642 1.9E-59 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS14795 0aea73354ee8c99bf2c210166b9fb39c 657 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 1.9E-59 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS10845 f81cfc6c018a32824b87816a11a11b34 198 Gene3D G3DSA:1.10.357.10 5 189 2.5E-30 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RD1_RS10845 f81cfc6c018a32824b87816a11a11b34 198 PANTHER PTHR30055:SF44 1 197 4.4E-38 T 23-04-2016 RD1_RS10845 f81cfc6c018a32824b87816a11a11b34 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 59 1.3E-11 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS10845 f81cfc6c018a32824b87816a11a11b34 198 SUPERFAMILY SSF46689 4 74 4.62E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS10845 f81cfc6c018a32824b87816a11a11b34 198 SUPERFAMILY SSF48498 84 190 1.01E-14 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RD1_RS10845 f81cfc6c018a32824b87816a11a11b34 198 PANTHER PTHR30055 1 197 4.4E-38 T 23-04-2016 RD1_RS16880 f81cfc6c018a32824b87816a11a11b34 198 Gene3D G3DSA:1.10.357.10 5 189 2.5E-30 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RD1_RS16880 f81cfc6c018a32824b87816a11a11b34 198 PANTHER PTHR30055:SF44 1 197 4.4E-38 T 23-04-2016 RD1_RS16880 f81cfc6c018a32824b87816a11a11b34 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 59 1.3E-11 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS16880 f81cfc6c018a32824b87816a11a11b34 198 SUPERFAMILY SSF46689 4 74 4.62E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS16880 f81cfc6c018a32824b87816a11a11b34 198 SUPERFAMILY SSF48498 84 190 1.01E-14 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RD1_RS16880 f81cfc6c018a32824b87816a11a11b34 198 PANTHER PTHR30055 1 197 4.4E-38 T 23-04-2016 RD1_RS02320 8e1fed4e13a013bde007ad2e183e9fc2 608 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 419 573 4.1E-17 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RD1_RS02320 8e1fed4e13a013bde007ad2e183e9fc2 608 SMART SM01080 38 323 9.5E-55 T 23-04-2016 IPR007890 CHASE2 RD1_RS02320 8e1fed4e13a013bde007ad2e183e9fc2 608 Gene3D G3DSA:3.30.70.1230 418 601 7.5E-29 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RD1_RS02320 8e1fed4e13a013bde007ad2e183e9fc2 608 PANTHER PTHR11920:SF341 368 556 9.4E-21 T 23-04-2016 RD1_RS02320 8e1fed4e13a013bde007ad2e183e9fc2 608 SUPERFAMILY SSF55073 413 600 1.22E-37 T 23-04-2016 IPR029787 Nucleotide cyclase RD1_RS02320 8e1fed4e13a013bde007ad2e183e9fc2 608 SMART SM00044 385 582 7.9E-5 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RD1_RS02320 8e1fed4e13a013bde007ad2e183e9fc2 608 PANTHER PTHR11920 368 556 9.4E-21 T 23-04-2016 RD1_RS02320 8e1fed4e13a013bde007ad2e183e9fc2 608 Pfam PF05226 CHASE2 domain 30 318 2.8E-39 T 23-04-2016 IPR007890 CHASE2 RD1_RS07855 e3f7f87490a9215235e3687507b6ba43 333 Pfam PF12833 Helix-turn-helix domain 249 326 3.7E-24 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS07855 e3f7f87490a9215235e3687507b6ba43 333 PANTHER PTHR11019 53 326 4.6E-33 T 23-04-2016 RD1_RS07855 e3f7f87490a9215235e3687507b6ba43 333 Pfam PF01965 DJ-1/PfpI family 54 183 2.7E-13 T 23-04-2016 IPR002818 DJ-1/PfpI RD1_RS07855 e3f7f87490a9215235e3687507b6ba43 333 SMART SM00342 243 326 2.5E-27 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS07855 e3f7f87490a9215235e3687507b6ba43 333 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 310 326 6.2E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RD1_RS07855 e3f7f87490a9215235e3687507b6ba43 333 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 295 310 6.2E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RD1_RS07855 e3f7f87490a9215235e3687507b6ba43 333 SUPERFAMILY SSF46689 279 327 7.62E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS07855 e3f7f87490a9215235e3687507b6ba43 333 Gene3D G3DSA:1.10.10.60 225 279 4.8E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS07855 e3f7f87490a9215235e3687507b6ba43 333 PANTHER PTHR11019:SF68 53 326 4.6E-33 T 23-04-2016 RD1_RS07855 e3f7f87490a9215235e3687507b6ba43 333 Gene3D G3DSA:3.40.50.880 16 217 2.2E-37 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS07855 e3f7f87490a9215235e3687507b6ba43 333 Gene3D G3DSA:1.10.10.60 280 328 3.0E-17 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS07855 e3f7f87490a9215235e3687507b6ba43 333 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 280 322 - T 23-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RD1_RS07855 e3f7f87490a9215235e3687507b6ba43 333 SUPERFAMILY SSF46689 226 274 5.02E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS07855 e3f7f87490a9215235e3687507b6ba43 333 SUPERFAMILY SSF52317 16 206 2.44E-41 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS06505 25728f28d3ac30102f8e3ffe6395fbaa 280 SUPERFAMILY SSF50104 126 271 4.27E-60 T 23-04-2016 IPR008991 Translation protein SH3-like domain RD1_RS06505 25728f28d3ac30102f8e3ffe6395fbaa 280 PANTHER PTHR13691 1 280 6.0E-140 T 23-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06505 25728f28d3ac30102f8e3ffe6395fbaa 280 Gene3D G3DSA:2.40.50.140 1 114 4.8E-51 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS06505 25728f28d3ac30102f8e3ffe6395fbaa 280 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 274 46.227 T 23-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RD1_RS06505 25728f28d3ac30102f8e3ffe6395fbaa 280 PIRSF PIRSF002158 4 276 5.6E-101 T 23-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06505 25728f28d3ac30102f8e3ffe6395fbaa 280 SMART SM01383 42 118 3.5E-45 T 23-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06505 25728f28d3ac30102f8e3ffe6395fbaa 280 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 250 9.3E-56 T 23-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RD1_RS06505 25728f28d3ac30102f8e3ffe6395fbaa 280 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 23-04-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 RD1_RS06505 25728f28d3ac30102f8e3ffe6395fbaa 280 PANTHER PTHR13691:SF5 1 280 6.0E-140 T 23-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RD1_RS06505 25728f28d3ac30102f8e3ffe6395fbaa 280 SUPERFAMILY SSF50249 2 125 9.25E-49 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS06505 25728f28d3ac30102f8e3ffe6395fbaa 280 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 274 3.9E-128 T 23-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RD1_RS06505 25728f28d3ac30102f8e3ffe6395fbaa 280 Gene3D G3DSA:4.10.950.10 196 273 2.5E-33 T 23-04-2016 IPR014726 Ribosomal protein L2, domain 3 RD1_RS06505 25728f28d3ac30102f8e3ffe6395fbaa 280 Gene3D G3DSA:2.30.30.30 120 195 8.0E-34 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 RD1_RS06505 25728f28d3ac30102f8e3ffe6395fbaa 280 SMART SM01382 124 252 5.8E-89 T 23-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RD1_RS06505 25728f28d3ac30102f8e3ffe6395fbaa 280 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 9.8E-34 T 23-04-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 695 786 3.6E-19 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 Gene3D G3DSA:3.50.50.60 1 82 1.0E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 Gene3D G3DSA:3.50.50.60 142 219 1.0E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 Gene3D G3DSA:3.50.50.60 326 382 1.0E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 Gene3D G3DSA:2.40.30.110 709 786 8.6E-24 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 PANTHER PTHR13847:SF193 3 444 8.0E-111 T 23-04-2016 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 Gene3D G3DSA:3.30.9.10 220 324 6.4E-33 T 23-04-2016 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 Gene3D G3DSA:3.30.9.10 86 141 6.4E-33 T 23-04-2016 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 Pfam PF01266 FAD dependent oxidoreductase 6 364 5.3E-57 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 PANTHER PTHR13847 3 444 8.0E-111 T 23-04-2016 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 SUPERFAMILY SSF51905 326 409 4.86E-58 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 SUPERFAMILY SSF51905 4 220 4.86E-58 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 SUPERFAMILY SSF101790 714 800 1.64E-20 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 Pfam PF16350 FAD dependent oxidoreductase central domain 367 421 3.8E-15 T 23-04-2016 IPR032503 FAD dependent oxidoreductase, central domain RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 Pfam PF01571 Aminomethyltransferase folate-binding domain 425 687 4.1E-56 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 SUPERFAMILY SSF103025 417 705 3.79E-70 T 23-04-2016 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 Gene3D G3DSA:3.30.1360.120 575 666 4.1E-17 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 Gene3D G3DSA:3.30.1360.120 421 488 4.1E-17 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 Gene3D G3DSA:3.30.70.1400 489 560 4.6E-9 T 23-04-2016 RD1_RS06210 8739b36e0e9fdcf0cd495260a37d1857 800 SUPERFAMILY SSF54373 220 325 1.33E-21 T 23-04-2016 RD1_RS14580 9bbdd7d02425e05692d797990f854df7 260 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 258 5.1E-69 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RD1_RS14580 9bbdd7d02425e05692d797990f854df7 260 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 215 226 - T 23-04-2016 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 RD1_RS14580 9bbdd7d02425e05692d797990f854df7 260 Gene3D G3DSA:3.60.10.10 1 258 1.6E-77 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS14580 9bbdd7d02425e05692d797990f854df7 260 PANTHER PTHR22748:SF9 1 258 1.9E-117 T 23-04-2016 RD1_RS14580 9bbdd7d02425e05692d797990f854df7 260 SUPERFAMILY SSF56219 1 258 9.55E-77 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS14580 9bbdd7d02425e05692d797990f854df7 260 PANTHER PTHR22748 1 258 1.9E-117 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RD1_RS14580 9bbdd7d02425e05692d797990f854df7 260 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 257 8.9E-73 T 23-04-2016 RD1_RS14580 9bbdd7d02425e05692d797990f854df7 260 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 251 3.6E-26 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS13995 6280988f59a0224813b238eb542f44e6 211 PANTHER PTHR21368 1 162 1.3E-48 T 23-04-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS13995 6280988f59a0224813b238eb542f44e6 211 Pfam PF03948 Ribosomal protein L9, C-terminal domain 63 144 3.5E-23 T 23-04-2016 IPR020069 Ribosomal protein L9, C-terminal RD1_RS13995 6280988f59a0224813b238eb542f44e6 211 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 23-04-2016 IPR020070 Ribosomal protein L9, N-terminal RD1_RS13995 6280988f59a0224813b238eb542f44e6 211 SUPERFAMILY SSF55653 60 145 2.88E-23 T 23-04-2016 IPR020069 Ribosomal protein L9, C-terminal RD1_RS13995 6280988f59a0224813b238eb542f44e6 211 SUPERFAMILY SSF55658 1 57 7.15E-19 T 23-04-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal RD1_RS13995 6280988f59a0224813b238eb542f44e6 211 Gene3D G3DSA:3.10.430.100 61 145 3.1E-24 T 23-04-2016 IPR020069 Ribosomal protein L9, C-terminal RD1_RS13995 6280988f59a0224813b238eb542f44e6 211 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 146 25.417 T 23-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS13995 6280988f59a0224813b238eb542f44e6 211 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 144 4.4E-41 T 23-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS13995 6280988f59a0224813b238eb542f44e6 211 Gene3D G3DSA:3.40.5.10 1 52 1.0E-25 T 23-04-2016 IPR020070 Ribosomal protein L9, N-terminal RD1_RS13995 6280988f59a0224813b238eb542f44e6 211 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 2.3E-22 T 23-04-2016 IPR020070 Ribosomal protein L9, N-terminal RD1_RS08065 a99569521d051f79a3b361c0c0fc326d 617 PANTHER PTHR24221 12 587 9.4E-190 T 23-04-2016 RD1_RS08065 a99569521d051f79a3b361c0c0fc326d 617 Gene3D G3DSA:3.40.50.300 344 590 1.1E-78 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08065 a99569521d051f79a3b361c0c0fc326d 617 SUPERFAMILY SSF90123 13 325 1.7E-63 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS08065 a99569521d051f79a3b361c0c0fc326d 617 SUPERFAMILY SSF52540 334 579 1.88E-86 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08065 a99569521d051f79a3b361c0c0fc326d 617 Pfam PF00664 ABC transporter transmembrane region 29 295 4.3E-31 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS08065 a99569521d051f79a3b361c0c0fc326d 617 SMART SM00382 368 554 2.1E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS08065 a99569521d051f79a3b361c0c0fc326d 617 Gene3D G3DSA:1.20.1560.10 12 331 4.6E-64 T 23-04-2016 RD1_RS08065 a99569521d051f79a3b361c0c0fc326d 617 Pfam PF00005 ABC transporter 359 508 7.5E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS08065 a99569521d051f79a3b361c0c0fc326d 617 ProSitePatterns PS00211 ABC transporters family signature. 480 494 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS08065 a99569521d051f79a3b361c0c0fc326d 617 PANTHER PTHR24221:SF138 12 587 9.4E-190 T 23-04-2016 RD1_RS05805 74ea92a4d7b1b1c52fefb3f1028df5f0 322 Pfam PF00293 NUDIX domain 187 299 3.2E-16 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RD1_RS05805 74ea92a4d7b1b1c52fefb3f1028df5f0 322 PRINTS PR00502 NUDIX hydrolase family signature 212 226 5.2E-5 T 23-04-2016 IPR020476 NUDIX hydrolase RD1_RS05805 74ea92a4d7b1b1c52fefb3f1028df5f0 322 PRINTS PR00502 NUDIX hydrolase family signature 226 241 5.2E-5 T 23-04-2016 IPR020476 NUDIX hydrolase RD1_RS05805 74ea92a4d7b1b1c52fefb3f1028df5f0 322 SUPERFAMILY SSF55811 135 319 2.57E-41 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS05805 74ea92a4d7b1b1c52fefb3f1028df5f0 322 Gene3D G3DSA:3.90.79.10 147 319 1.2E-43 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS05805 74ea92a4d7b1b1c52fefb3f1028df5f0 322 Pfam PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain 36 149 1.5E-15 T 23-04-2016 IPR015375 NADH pyrophosphatase-like, N-terminal GO:0016787 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 RD1_RS05805 74ea92a4d7b1b1c52fefb3f1028df5f0 322 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 151 182 1.1E-8 T 23-04-2016 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 RD1_RS05805 74ea92a4d7b1b1c52fefb3f1028df5f0 322 PANTHER PTHR11383 71 321 2.4E-66 T 23-04-2016 RD1_RS05805 74ea92a4d7b1b1c52fefb3f1028df5f0 322 ProSitePatterns PS00893 Nudix box signature. 217 238 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 SUPERFAMILY SSF53067 154 381 3.15E-74 T 23-04-2016 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 Hamap MF_00020 Acetate kinase [ackA]. 1 383 150.493 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 PRINTS PR00471 Acetate kinase family signature 363 375 1.7E-39 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 PRINTS PR00471 Acetate kinase family signature 197 218 1.7E-39 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 PRINTS PR00471 Acetate kinase family signature 4 15 1.7E-39 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 PRINTS PR00471 Acetate kinase family signature 291 304 1.7E-39 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 PRINTS PR00471 Acetate kinase family signature 168 181 1.7E-39 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 PRINTS PR00471 Acetate kinase family signature 313 329 1.7E-39 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 Gene3D G3DSA:3.30.420.40 3 198 1.1E-7 T 23-04-2016 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 Pfam PF00871 Acetokinase family 4 376 8.8E-103 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 197 214 - T 23-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 PIRSF PIRSF000722 1 383 9.8E-132 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 TIGRFAM TIGR00016 ackA: acetate kinase 3 378 6.6E-106 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 PANTHER PTHR21060:SF11 1 378 1.1E-139 T 23-04-2016 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 SUPERFAMILY SSF53067 2 188 6.47E-56 T 23-04-2016 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 PANTHER PTHR21060 1 378 1.1E-139 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 Gene3D G3DSA:3.30.420.40 199 379 2.8E-64 T 23-04-2016 RD1_RS17545 9321d13c97233b8bbe5af3005ef4a1ac 383 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 4 15 - T 23-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RD1_RS04325 bd5ff8df358dd2e826276f635a17d671 238 PANTHER PTHR30035:SF3 7 224 4.0E-45 T 23-04-2016 RD1_RS04325 bd5ff8df358dd2e826276f635a17d671 238 PRINTS PR01805 VacJ lipoprotein signature 40 56 2.0E-24 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RD1_RS04325 bd5ff8df358dd2e826276f635a17d671 238 PRINTS PR01805 VacJ lipoprotein signature 127 144 2.0E-24 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RD1_RS04325 bd5ff8df358dd2e826276f635a17d671 238 PRINTS PR01805 VacJ lipoprotein signature 23 36 2.0E-24 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RD1_RS04325 bd5ff8df358dd2e826276f635a17d671 238 PRINTS PR01805 VacJ lipoprotein signature 91 108 2.0E-24 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RD1_RS04325 bd5ff8df358dd2e826276f635a17d671 238 Pfam PF04333 MlaA lipoprotein 22 219 4.9E-67 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RD1_RS04325 bd5ff8df358dd2e826276f635a17d671 238 PANTHER PTHR30035 7 224 4.0E-45 T 23-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 2.0E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 2.0E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.0E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 2.0E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 2.0E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 2.0E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 PANTHER PTHR24322 152 184 2.0E-59 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 PANTHER PTHR24322 11 136 2.0E-59 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 PANTHER PTHR24322:SF328 152 184 2.0E-59 T 23-04-2016 RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 PANTHER PTHR24322:SF328 11 136 2.0E-59 T 23-04-2016 RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 SUPERFAMILY SSF51735 6 244 1.2E-85 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 188 3.1E-7 T 23-04-2016 RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 7.5E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 7.5E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 7.5E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 Gene3D G3DSA:3.40.50.720 1 244 1.4E-89 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 9 243 1.8E-96 T 23-04-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RD1_RS13965 74607ee3e5a55b8b3fa7b5e9670c708a 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 242 7.8E-65 T 23-04-2016 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 PANTHER PTHR30555 1 724 0.0 T 23-04-2016 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 Hamap MF_01961 Catalase-peroxidase [katG]. 7 725 38.684 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 Gene3D G3DSA:1.10.420.10 579 700 7.7E-46 T 23-04-2016 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 SUPERFAMILY SSF48113 18 431 8.1E-142 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 Pfam PF00141 Peroxidase 67 397 3.1E-47 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 Pfam PF00141 Peroxidase 408 699 8.9E-36 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 ProSitePatterns PS00436 Peroxidases active site signature. 90 101 - T 23-04-2016 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 Gene3D G3DSA:1.10.420.10 252 274 6.8E-45 T 23-04-2016 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 Gene3D G3DSA:1.10.420.10 310 409 6.8E-45 T 23-04-2016 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 12 725 0.0 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 67 92 1.4E-47 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 52 65 1.4E-47 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 26 48 1.4E-47 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 267 290 1.4E-47 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 478 504 1.4E-47 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 PANTHER PTHR30555:SF0 1 724 0.0 T 23-04-2016 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 Gene3D G3DSA:1.10.520.10 434 578 1.9E-54 T 23-04-2016 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 Gene3D G3DSA:1.10.520.10 47 201 1.5E-71 T 23-04-2016 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 Gene3D G3DSA:1.10.520.10 239 251 1.5E-71 T 23-04-2016 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 Gene3D G3DSA:1.10.520.10 703 725 1.9E-54 T 23-04-2016 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 PRINTS PR00458 Haem peroxidase superfamily signature 318 333 2.1E-16 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 PRINTS PR00458 Haem peroxidase superfamily signature 259 274 2.1E-16 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 PRINTS PR00458 Haem peroxidase superfamily signature 168 180 2.1E-16 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 PRINTS PR00458 Haem peroxidase superfamily signature 150 167 2.1E-16 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 PRINTS PR00458 Haem peroxidase superfamily signature 90 104 2.1E-16 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RD1_RS10140 e6b5754caf985e126aa9576309094299 726 SUPERFAMILY SSF48113 432 724 2.06E-106 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RD1_RS07235 04650746ce2700db5722718377a6d122 263 Gene3D G3DSA:3.30.950.10 120 247 1.5E-34 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RD1_RS07235 04650746ce2700db5722718377a6d122 263 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 84 117 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS07235 04650746ce2700db5722718377a6d122 263 Gene3D G3DSA:3.40.1010.10 3 119 4.5E-42 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RD1_RS07235 04650746ce2700db5722718377a6d122 263 PANTHER PTHR21091:SF16 1 216 7.1E-69 T 23-04-2016 RD1_RS07235 04650746ce2700db5722718377a6d122 263 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 216 1.0E-47 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS07235 04650746ce2700db5722718377a6d122 263 PANTHER PTHR21091 1 216 7.1E-69 T 23-04-2016 RD1_RS07235 04650746ce2700db5722718377a6d122 263 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 9 23 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS07235 04650746ce2700db5722718377a6d122 263 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 4 239 4.0E-86 T 23-04-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS07235 04650746ce2700db5722718377a6d122 263 SUPERFAMILY SSF53790 2 242 3.14E-72 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS03930 a361706120c8e0c760b6312a7ec99c39 395 PANTHER PTHR30483 1 395 3.2E-36 T 23-04-2016 RD1_RS03930 a361706120c8e0c760b6312a7ec99c39 395 Gene3D G3DSA:3.40.50.2300 303 345 2.3E-20 T 23-04-2016 RD1_RS03930 a361706120c8e0c760b6312a7ec99c39 395 Gene3D G3DSA:3.40.50.2300 29 155 2.3E-20 T 23-04-2016 RD1_RS03930 a361706120c8e0c760b6312a7ec99c39 395 Gene3D G3DSA:3.40.50.2300 156 302 3.2E-18 T 23-04-2016 RD1_RS03930 a361706120c8e0c760b6312a7ec99c39 395 SUPERFAMILY SSF53822 31 387 3.62E-49 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS03930 a361706120c8e0c760b6312a7ec99c39 395 Pfam PF13458 Periplasmic binding protein 31 348 1.6E-47 T 23-04-2016 IPR028081 Leucine-binding protein domain RD1_RS07705 8c5bccab5c6d1b72699feee5c1926436 164 Gene3D G3DSA:3.40.250.10 54 161 4.4E-20 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS07705 8c5bccab5c6d1b72699feee5c1926436 164 Pfam PF00581 Rhodanese-like domain 56 143 1.2E-5 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS07705 8c5bccab5c6d1b72699feee5c1926436 164 SUPERFAMILY SSF52821 49 161 1.31E-18 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS07705 8c5bccab5c6d1b72699feee5c1926436 164 SMART SM00450 52 153 6.0E-4 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS01455 a2fceb24084ddfbc08cd3d3c7203b97e 216 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 92 112 - T 23-04-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RD1_RS01455 a2fceb24084ddfbc08cd3d3c7203b97e 216 PANTHER PTHR11002 11 206 1.9E-54 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RD1_RS01455 a2fceb24084ddfbc08cd3d3c7203b97e 216 Gene3D G3DSA:3.40.1050.10 9 213 1.3E-58 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RD1_RS01455 a2fceb24084ddfbc08cd3d3c7203b97e 216 Pfam PF00484 Carbonic anhydrase 42 202 1.6E-42 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RD1_RS01455 a2fceb24084ddfbc08cd3d3c7203b97e 216 SMART SM00947 35 207 5.9E-56 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RD1_RS01455 a2fceb24084ddfbc08cd3d3c7203b97e 216 SUPERFAMILY SSF53056 8 208 5.36E-55 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RD1_RS05110 8e602ad6610eb0f4b7d3bc6c4ed92572 608 Gene3D G3DSA:3.20.20.70 141 309 7.4E-33 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS05110 8e602ad6610eb0f4b7d3bc6c4ed92572 608 Gene3D G3DSA:2.60.120.10 3 129 9.0E-18 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS05110 8e602ad6610eb0f4b7d3bc6c4ed92572 608 SUPERFAMILY SSF54631 144 262 1.09E-31 T 23-04-2016 RD1_RS05110 8e602ad6610eb0f4b7d3bc6c4ed92572 608 SUPERFAMILY SSF81301 264 384 8.17E-5 T 23-04-2016 RD1_RS05110 8e602ad6610eb0f4b7d3bc6c4ed92572 608 PANTHER PTHR11911 311 320 4.1E-25 T 23-04-2016 RD1_RS05110 8e602ad6610eb0f4b7d3bc6c4ed92572 608 PANTHER PTHR11911 140 273 4.1E-25 T 23-04-2016 RD1_RS05110 8e602ad6610eb0f4b7d3bc6c4ed92572 608 Pfam PF00027 Cyclic nucleotide-binding domain 34 112 4.4E-13 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS05110 8e602ad6610eb0f4b7d3bc6c4ed92572 608 Pfam PF03445 Putative nucleotidyltransferase DUF294 288 423 1.3E-46 T 23-04-2016 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 RD1_RS05110 8e602ad6610eb0f4b7d3bc6c4ed92572 608 Pfam PF00571 CBS domain 145 196 1.4E-11 T 23-04-2016 IPR000644 CBS domain RD1_RS05110 8e602ad6610eb0f4b7d3bc6c4ed92572 608 Pfam PF00571 CBS domain 210 262 2.1E-10 T 23-04-2016 IPR000644 CBS domain RD1_RS05110 8e602ad6610eb0f4b7d3bc6c4ed92572 608 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 461 600 4.3E-40 T 23-04-2016 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding RD1_RS05110 8e602ad6610eb0f4b7d3bc6c4ed92572 608 SUPERFAMILY SSF51206 8 129 9.3E-21 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RD1_RS05110 8e602ad6610eb0f4b7d3bc6c4ed92572 608 SMART SM00116 152 199 1.7E-8 T 23-04-2016 IPR000644 CBS domain RD1_RS05110 8e602ad6610eb0f4b7d3bc6c4ed92572 608 SMART SM00116 216 263 2.9E-9 T 23-04-2016 IPR000644 CBS domain RD1_RS05110 8e602ad6610eb0f4b7d3bc6c4ed92572 608 SMART SM00100 14 128 1.6E-10 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS12465 46e00d7b7acc78e45fd5ded77da77879 386 Gene3D G3DSA:3.30.70.1170 145 203 1.5E-6 T 23-04-2016 RD1_RS12465 46e00d7b7acc78e45fd5ded77da77879 386 Pfam PF01189 16S rRNA methyltransferase RsmB/F 216 364 1.4E-31 T 23-04-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS12465 46e00d7b7acc78e45fd5ded77da77879 386 Gene3D G3DSA:3.40.50.150 214 385 2.2E-38 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS12465 46e00d7b7acc78e45fd5ded77da77879 386 PANTHER PTHR22807:SF33 117 363 3.8E-59 T 23-04-2016 RD1_RS12465 46e00d7b7acc78e45fd5ded77da77879 386 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 222 232 1.6E-23 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS12465 46e00d7b7acc78e45fd5ded77da77879 386 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 195 209 1.6E-23 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS12465 46e00d7b7acc78e45fd5ded77da77879 386 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 368 385 1.6E-23 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS12465 46e00d7b7acc78e45fd5ded77da77879 386 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 282 294 1.6E-23 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS12465 46e00d7b7acc78e45fd5ded77da77879 386 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 332 348 1.6E-23 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS12465 46e00d7b7acc78e45fd5ded77da77879 386 PANTHER PTHR22807 117 363 3.8E-59 T 23-04-2016 RD1_RS12465 46e00d7b7acc78e45fd5ded77da77879 386 SUPERFAMILY SSF53335 114 385 4.18E-57 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS16615 d48b55ae1b916e0b7f68513d194e8571 269 SUPERFAMILY SSF53613 1 262 1.56E-79 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS16615 d48b55ae1b916e0b7f68513d194e8571 269 PANTHER PTHR20858 2 268 2.2E-111 T 23-04-2016 RD1_RS16615 d48b55ae1b916e0b7f68513d194e8571 269 Gene3D G3DSA:3.40.1190.20 2 261 2.0E-100 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS16615 d48b55ae1b916e0b7f68513d194e8571 269 PANTHER PTHR20858:SF17 2 268 2.2E-111 T 23-04-2016 RD1_RS16615 d48b55ae1b916e0b7f68513d194e8571 269 Pfam PF08543 Phosphomethylpyrimidine kinase 12 259 1.9E-92 T 23-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 RD1_RS16615 d48b55ae1b916e0b7f68513d194e8571 269 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 5 260 2.2E-95 T 23-04-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RD1_RS18760 61ea037cd50eef72a58d4674878c48d6 536 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 85 108 - T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS18760 61ea037cd50eef72a58d4674878c48d6 536 Gene3D G3DSA:3.50.50.60 7 129 3.4E-128 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS18760 61ea037cd50eef72a58d4674878c48d6 536 Gene3D G3DSA:3.50.50.60 190 317 3.4E-128 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS18760 61ea037cd50eef72a58d4674878c48d6 536 Gene3D G3DSA:3.50.50.60 471 534 3.4E-128 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS18760 61ea037cd50eef72a58d4674878c48d6 536 PANTHER PTHR11552 9 534 5.9E-213 T 23-04-2016 RD1_RS18760 61ea037cd50eef72a58d4674878c48d6 536 Pfam PF05199 GMC oxidoreductase 390 528 5.7E-38 T 23-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 RD1_RS18760 61ea037cd50eef72a58d4674878c48d6 536 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 258 272 - T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS18760 61ea037cd50eef72a58d4674878c48d6 536 SUPERFAMILY SSF54373 294 478 3.24E-52 T 23-04-2016 RD1_RS18760 61ea037cd50eef72a58d4674878c48d6 536 Pfam PF00732 GMC oxidoreductase 9 299 6.3E-93 T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS18760 61ea037cd50eef72a58d4674878c48d6 536 SUPERFAMILY SSF51905 477 534 8.58E-94 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS18760 61ea037cd50eef72a58d4674878c48d6 536 SUPERFAMILY SSF51905 7 292 8.58E-94 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS18760 61ea037cd50eef72a58d4674878c48d6 536 PIRSF PIRSF000137 3 536 1.9E-154 T 23-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 RD1_RS18760 61ea037cd50eef72a58d4674878c48d6 536 PANTHER PTHR11552:SF51 9 534 5.9E-213 T 23-04-2016 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 PANTHER PTHR13847:SF193 5 448 2.0E-158 T 23-04-2016 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 Pfam PF16350 FAD dependent oxidoreductase central domain 372 425 4.2E-15 T 23-04-2016 IPR032503 FAD dependent oxidoreductase, central domain RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 SUPERFAMILY SSF101790 723 813 5.72E-18 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 Gene3D G3DSA:3.50.50.60 144 226 1.4E-60 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 Gene3D G3DSA:3.50.50.60 329 388 1.4E-60 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 Gene3D G3DSA:3.50.50.60 5 85 1.4E-60 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 SUPERFAMILY SSF103025 421 720 1.57E-93 T 23-04-2016 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 Pfam PF01266 FAD dependent oxidoreductase 9 368 8.7E-59 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 SUPERFAMILY SSF54373 227 328 9.81E-32 T 23-04-2016 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 Gene3D G3DSA:2.40.30.110 720 799 5.5E-20 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 Gene3D G3DSA:3.30.70.1400 493 576 1.3E-21 T 23-04-2016 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 Gene3D G3DSA:3.30.1360.120 580 676 3.4E-37 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 Gene3D G3DSA:3.30.1360.120 424 492 3.4E-37 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 PANTHER PTHR13847 5 448 2.0E-158 T 23-04-2016 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 706 800 2.0E-17 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 Pfam PF01571 Aminomethyltransferase folate-binding domain 429 699 5.3E-70 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 Gene3D G3DSA:3.30.9.10 89 143 1.5E-52 T 23-04-2016 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 Gene3D G3DSA:3.30.9.10 227 328 1.5E-52 T 23-04-2016 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 SUPERFAMILY SSF51905 329 416 6.47E-65 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00080 7453cf853a0dc196c219dbd8aba94866 815 SUPERFAMILY SSF51905 8 227 6.47E-65 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02125 a8ff4210f998293c2c14a6574cfb70ed 515 SUPERFAMILY SSF55785 372 429 4.36E-5 T 23-04-2016 IPR000014 PAS domain RD1_RS02125 a8ff4210f998293c2c14a6574cfb70ed 515 Pfam PF12860 PAS fold 266 378 1.2E-10 T 23-04-2016 RD1_RS02125 a8ff4210f998293c2c14a6574cfb70ed 515 SMART SM00091 388 455 9.1 T 23-04-2016 IPR000014 PAS domain RD1_RS02125 a8ff4210f998293c2c14a6574cfb70ed 515 SMART SM00091 258 329 0.53 T 23-04-2016 IPR000014 PAS domain RD1_RS02125 a8ff4210f998293c2c14a6574cfb70ed 515 SMART SM00091 149 217 5.6 T 23-04-2016 IPR000014 PAS domain RD1_RS02125 a8ff4210f998293c2c14a6574cfb70ed 515 Gene3D G3DSA:3.30.450.20 143 221 4.7E-4 T 23-04-2016 RD1_RS02125 a8ff4210f998293c2c14a6574cfb70ed 515 Gene3D G3DSA:3.30.450.20 250 374 3.0E-8 T 23-04-2016 RD1_RS02125 a8ff4210f998293c2c14a6574cfb70ed 515 Gene3D G3DSA:3.30.450.20 383 491 5.4E-4 T 23-04-2016 RD1_RS02125 a8ff4210f998293c2c14a6574cfb70ed 515 Pfam PF13188 PAS domain 391 442 0.065 T 23-04-2016 IPR000014 PAS domain RD1_RS02125 a8ff4210f998293c2c14a6574cfb70ed 515 SUPERFAMILY SSF55785 242 363 3.32E-8 T 23-04-2016 IPR000014 PAS domain RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 SUPERFAMILY SSF58104 531 812 2.62E-68 T 23-04-2016 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 SUPERFAMILY SSF158472 201 249 2.22E-7 T 23-04-2016 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 PANTHER PTHR32089 546 814 8.8E-105 T 23-04-2016 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 PANTHER PTHR32089 179 234 8.8E-105 T 23-04-2016 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 Gene3D G3DSA:3.30.450.20 393 494 1.2E-6 T 23-04-2016 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 739 768 4.0E-43 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 585 614 4.0E-43 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 691 720 4.0E-43 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 662 689 4.0E-43 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 SUPERFAMILY SSF55785 392 494 1.15E-6 T 23-04-2016 IPR000014 PAS domain RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 Pfam PF08448 PAS fold 395 494 5.2E-5 T 23-04-2016 IPR013656 PAS fold-4 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 Gene3D G3DSA:1.10.287.950 579 783 9.3E-57 T 23-04-2016 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 619 810 1.1E-56 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 SMART SM00304 199 252 4.5E-5 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 SMART SM00304 511 563 0.11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 SMART SM00283 564 811 4.2E-92 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 PANTHER PTHR32089:SF63 546 814 8.8E-105 T 23-04-2016 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 PANTHER PTHR32089:SF63 179 234 8.8E-105 T 23-04-2016 RD1_RS11560 7c28976254a257e69b8bdb3148cc123f 863 Pfam PF00672 HAMP domain 181 247 1.4E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS06315 e83b5e062a728af077a9ba3dbe37cc63 302 Gene3D G3DSA:3.30.300.20 187 290 2.1E-35 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RD1_RS06315 e83b5e062a728af077a9ba3dbe37cc63 302 PANTHER PTHR11649:SF3 3 294 5.8E-109 T 23-04-2016 RD1_RS06315 e83b5e062a728af077a9ba3dbe37cc63 302 Gene3D G3DSA:3.40.50.300 4 171 3.2E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06315 e83b5e062a728af077a9ba3dbe37cc63 302 PANTHER PTHR11649 3 294 5.8E-109 T 23-04-2016 RD1_RS06315 e83b5e062a728af077a9ba3dbe37cc63 302 TIGRFAM TIGR00436 era: GTP-binding protein Era 6 278 8.6E-69 T 23-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 RD1_RS06315 e83b5e062a728af077a9ba3dbe37cc63 302 Pfam PF01926 50S ribosome-binding GTPase 8 124 1.2E-21 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS06315 e83b5e062a728af077a9ba3dbe37cc63 302 Hamap MF_00367 GTPase Era [era]. 3 295 32.6 T 23-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 RD1_RS06315 e83b5e062a728af077a9ba3dbe37cc63 302 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 164 1.7E-21 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RD1_RS06315 e83b5e062a728af077a9ba3dbe37cc63 302 SUPERFAMILY SSF54814 180 296 2.35E-37 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RD1_RS06315 e83b5e062a728af077a9ba3dbe37cc63 302 Pfam PF07650 KH domain 207 284 5.3E-17 T 23-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 RD1_RS06315 e83b5e062a728af077a9ba3dbe37cc63 302 SUPERFAMILY SSF52540 8 203 3.52E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 630 728 6.0E-20 T 23-04-2016 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: REACT_474 RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 99 729 44.49 T 23-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 Gene3D G3DSA:2.60.40.10 11 103 4.6E-13 T 23-04-2016 IPR013783 Immunoglobulin-like fold RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 Gene3D G3DSA:2.60.40.10 111 219 4.3E-35 T 23-04-2016 IPR013783 Immunoglobulin-like fold RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 SUPERFAMILY SSF81296 14 114 2.57E-15 T 23-04-2016 IPR014756 Immunoglobulin E-set RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 Gene3D G3DSA:3.20.20.80 245 614 2.7E-86 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 PANTHER PTHR10357 47 728 0.0 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 107 725 4.3E-275 T 23-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 SUPERFAMILY SSF81296 113 220 1.82E-23 T 23-04-2016 IPR014756 Immunoglobulin E-set RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 SUPERFAMILY SSF51011 626 729 2.16E-30 T 23-04-2016 RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 PIRSF PIRSF000463 4 731 2.3E-285 T 23-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 SMART SM00642 250 619 2.0E-5 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 Gene3D G3DSA:2.60.40.1180 626 728 1.6E-33 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 123 204 6.3E-19 T 23-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 SUPERFAMILY SSF51445 170 618 4.8E-112 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 PANTHER PTHR10357:SF158 47 728 0.0 T 23-04-2016 RD1_RS13240 ffc5181b7ec4cdb071d070985756b2f7 731 Pfam PF00128 Alpha amylase, catalytic domain 278 347 2.3E-6 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RD1_RS04920 2ae82987f32ca980ca1d586550e0194a 159 Pfam PF06793 Uncharacterised protein family (UPF0262) 2 157 6.0E-68 T 23-04-2016 IPR008321 Uncharacterised conserved protein UCP032146 RD1_RS04920 2ae82987f32ca980ca1d586550e0194a 159 Hamap MF_00678 UPF0262 protein . 1 158 38.11 T 23-04-2016 IPR008321 Uncharacterised conserved protein UCP032146 RD1_RS04920 2ae82987f32ca980ca1d586550e0194a 159 PIRSF PIRSF032146 1 159 3.6E-59 T 23-04-2016 IPR008321 Uncharacterised conserved protein UCP032146 RD1_RS08950 ffeea47d0a291a32948c5f150e768c90 241 Pfam PF00027 Cyclic nucleotide-binding domain 115 194 3.0E-7 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS08950 ffeea47d0a291a32948c5f150e768c90 241 Gene3D G3DSA:2.60.120.10 95 211 1.4E-15 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS08950 ffeea47d0a291a32948c5f150e768c90 241 SUPERFAMILY SSF51206 95 205 2.62E-16 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RD1_RS10440 d6d578b6b3d166c21a0c2b756b617774 253 SUPERFAMILY SSF56104 4 236 1.6E-78 T 23-04-2016 RD1_RS10440 d6d578b6b3d166c21a0c2b756b617774 253 Gene3D G3DSA:3.30.470.20 92 223 3.6E-50 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS10440 d6d578b6b3d166c21a0c2b756b617774 253 PANTHER PTHR11609 3 239 1.4E-110 T 23-04-2016 RD1_RS10440 d6d578b6b3d166c21a0c2b756b617774 253 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 4 238 2.7E-64 T 23-04-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RD1_RS10440 d6d578b6b3d166c21a0c2b756b617774 253 Pfam PF01259 SAICAR synthetase 5 235 2.4E-60 T 23-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RD1_RS10440 d6d578b6b3d166c21a0c2b756b617774 253 PANTHER PTHR11609:SF2 3 239 1.4E-110 T 23-04-2016 RD1_RS10440 d6d578b6b3d166c21a0c2b756b617774 253 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 23-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RD1_RS10440 d6d578b6b3d166c21a0c2b756b617774 253 Gene3D G3DSA:3.30.200.20 1 91 1.4E-35 T 23-04-2016 RD1_RS10440 d6d578b6b3d166c21a0c2b756b617774 253 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 238 32.219 T 23-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RD1_RS13630 de8ba70055ab8fb7669377a32d44191c 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 1.5E-12 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS13630 de8ba70055ab8fb7669377a32d44191c 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 1.5E-12 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS13630 de8ba70055ab8fb7669377a32d44191c 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 1.5E-12 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS13630 de8ba70055ab8fb7669377a32d44191c 156 Gene3D G3DSA:3.30.70.920 58 138 6.9E-23 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS13630 de8ba70055ab8fb7669377a32d44191c 156 SUPERFAMILY SSF46785 4 65 1.94E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS13630 de8ba70055ab8fb7669377a32d44191c 156 SMART SM00344 5 114 5.1E-40 T 23-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RD1_RS13630 de8ba70055ab8fb7669377a32d44191c 156 PANTHER PTHR30154:SF17 1 153 3.6E-53 T 23-04-2016 RD1_RS13630 de8ba70055ab8fb7669377a32d44191c 156 PANTHER PTHR30154 1 153 3.6E-53 T 23-04-2016 RD1_RS13630 de8ba70055ab8fb7669377a32d44191c 156 Pfam PF01037 Lrp/AsnC ligand binding domain 71 144 5.3E-17 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS13630 de8ba70055ab8fb7669377a32d44191c 156 ProSitePatterns PS00519 AsnC-type HTH domain signature. 23 49 - T 23-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RD1_RS13630 de8ba70055ab8fb7669377a32d44191c 156 SUPERFAMILY SSF54909 66 153 3.62E-17 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS13630 de8ba70055ab8fb7669377a32d44191c 156 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 51 6.5E-15 T 23-04-2016 RD1_RS13630 de8ba70055ab8fb7669377a32d44191c 156 Gene3D G3DSA:1.10.10.10 2 54 1.5E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS00520 fdf94621b93224e543c57a5412e6df01 516 ProSitePatterns PS00982 Bacterial-type phytoene dehydrogenase signature. 466 486 - T 23-04-2016 IPR008150 Phytoene dehydrogenase, bacterial-type, conserved site RD1_RS00520 fdf94621b93224e543c57a5412e6df01 516 PANTHER PTHR10668 16 496 2.2E-70 T 23-04-2016 RD1_RS00520 fdf94621b93224e543c57a5412e6df01 516 Gene3D G3DSA:3.50.50.60 438 503 1.7E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00520 fdf94621b93224e543c57a5412e6df01 516 Gene3D G3DSA:3.50.50.60 224 304 1.7E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00520 fdf94621b93224e543c57a5412e6df01 516 Gene3D G3DSA:3.50.50.60 133 147 1.7E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00520 fdf94621b93224e543c57a5412e6df01 516 Gene3D G3DSA:3.50.50.60 11 68 1.7E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00520 fdf94621b93224e543c57a5412e6df01 516 SUPERFAMILY SSF51905 457 496 3.89E-61 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00520 fdf94621b93224e543c57a5412e6df01 516 SUPERFAMILY SSF51905 11 317 3.89E-61 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00520 fdf94621b93224e543c57a5412e6df01 516 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 15 504 7.8E-77 T 23-04-2016 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 RD1_RS00520 fdf94621b93224e543c57a5412e6df01 516 PANTHER PTHR10668:SF75 16 496 2.2E-70 T 23-04-2016 RD1_RS00520 fdf94621b93224e543c57a5412e6df01 516 Pfam PF01593 Flavin containing amine oxidoreductase 22 295 1.3E-21 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RD1_RS04885 9495dc8fa47a248d5d8a0d67081816d9 358 Gene3D G3DSA:3.40.50.300 13 244 3.3E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04885 9495dc8fa47a248d5d8a0d67081816d9 358 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS04885 9495dc8fa47a248d5d8a0d67081816d9 358 PANTHER PTHR24220 14 251 1.0E-121 T 23-04-2016 RD1_RS04885 9495dc8fa47a248d5d8a0d67081816d9 358 Pfam PF08402 TOBE domain 285 353 6.5E-8 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS04885 9495dc8fa47a248d5d8a0d67081816d9 358 SUPERFAMILY SSF50331 247 349 1.02E-8 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS04885 9495dc8fa47a248d5d8a0d67081816d9 358 Pfam PF00005 ABC transporter 29 171 2.4E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS04885 9495dc8fa47a248d5d8a0d67081816d9 358 SMART SM00382 38 221 1.0E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS04885 9495dc8fa47a248d5d8a0d67081816d9 358 SUPERFAMILY SSF52540 13 252 1.46E-85 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04885 9495dc8fa47a248d5d8a0d67081816d9 358 PANTHER PTHR24220:SF150 14 251 1.0E-121 T 23-04-2016 RD1_RS18965 b60057b249db4bc822ced60754185fa2 410 Pfam PF06181 Protein of unknown function (DUF989) 6 298 3.1E-129 T 23-04-2016 IPR010389 Domain of unknown function DUF989 RD1_RS18965 b60057b249db4bc822ced60754185fa2 410 SUPERFAMILY SSF46626 283 407 2.04E-5 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS03685 f4fbad5e7a5407dfa7a26edc2a997011 387 PANTHER PTHR11601 4 386 2.7E-123 T 23-04-2016 RD1_RS03685 f4fbad5e7a5407dfa7a26edc2a997011 387 PANTHER PTHR11601:SF20 4 386 2.7E-123 T 23-04-2016 RD1_RS03685 f4fbad5e7a5407dfa7a26edc2a997011 387 Pfam PF00266 Aminotransferase class-V 5 369 1.1E-66 T 23-04-2016 IPR000192 Aminotransferase class V domain RD1_RS03685 f4fbad5e7a5407dfa7a26edc2a997011 387 Gene3D G3DSA:3.90.1150.10 254 374 5.2E-31 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS03685 f4fbad5e7a5407dfa7a26edc2a997011 387 SUPERFAMILY SSF53383 4 377 2.55E-84 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS03685 f4fbad5e7a5407dfa7a26edc2a997011 387 Gene3D G3DSA:3.40.640.10 17 253 9.0E-72 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS03685 f4fbad5e7a5407dfa7a26edc2a997011 387 PIRSF PIRSF005572 2 382 8.5E-107 T 23-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RD1_RS03685 f4fbad5e7a5407dfa7a26edc2a997011 387 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 196 215 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RD1_RS03945 8c87660b33b235c7f8a2b547d6cd43e8 260 PANTHER PTHR24220 6 111 3.6E-106 T 23-04-2016 RD1_RS03945 8c87660b33b235c7f8a2b547d6cd43e8 260 PANTHER PTHR24220 127 258 3.6E-106 T 23-04-2016 RD1_RS03945 8c87660b33b235c7f8a2b547d6cd43e8 260 SUPERFAMILY SSF52540 4 252 4.82E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03945 8c87660b33b235c7f8a2b547d6cd43e8 260 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 230 252 1.2E-12 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD1_RS03945 8c87660b33b235c7f8a2b547d6cd43e8 260 SMART SM00382 29 229 4.8E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS03945 8c87660b33b235c7f8a2b547d6cd43e8 260 Pfam PF00005 ABC transporter 22 181 6.4E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS03945 8c87660b33b235c7f8a2b547d6cd43e8 260 Gene3D G3DSA:3.40.50.300 3 251 2.2E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03945 8c87660b33b235c7f8a2b547d6cd43e8 260 PANTHER PTHR24220:SF358 6 111 3.6E-106 T 23-04-2016 RD1_RS03945 8c87660b33b235c7f8a2b547d6cd43e8 260 PANTHER PTHR24220:SF358 127 258 3.6E-106 T 23-04-2016 RD1_RS10795 8158045ca77d8f8187c42dbfe0556360 248 Pfam PF00005 ABC transporter 24 158 1.8E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS10795 8158045ca77d8f8187c42dbfe0556360 248 Gene3D G3DSA:3.40.50.300 4 206 1.6E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10795 8158045ca77d8f8187c42dbfe0556360 248 PANTHER PTHR24220:SF589 7 217 2.8E-78 T 23-04-2016 RD1_RS10795 8158045ca77d8f8187c42dbfe0556360 248 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS10795 8158045ca77d8f8187c42dbfe0556360 248 PANTHER PTHR24220 7 217 2.8E-78 T 23-04-2016 RD1_RS10795 8158045ca77d8f8187c42dbfe0556360 248 SUPERFAMILY SSF52540 8 230 5.93E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10795 8158045ca77d8f8187c42dbfe0556360 248 SMART SM00382 30 209 2.6E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS18745 ca2777ca2b93293a0beeb36608ee393a 320 Gene3D G3DSA:3.40.50.720 146 260 7.5E-30 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS18745 ca2777ca2b93293a0beeb36608ee393a 320 PANTHER PTHR11695:SF31 13 319 1.0E-116 T 23-04-2016 RD1_RS18745 ca2777ca2b93293a0beeb36608ee393a 320 SUPERFAMILY SSF51735 113 283 1.58E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS18745 ca2777ca2b93293a0beeb36608ee393a 320 PANTHER PTHR11695 13 319 1.0E-116 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS18745 ca2777ca2b93293a0beeb36608ee393a 320 Pfam PF00107 Zinc-binding dehydrogenase 149 264 1.2E-27 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RD1_RS18745 ca2777ca2b93293a0beeb36608ee393a 320 SMART SM00829 10 317 1.8E-36 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RD1_RS18745 ca2777ca2b93293a0beeb36608ee393a 320 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 88 1.5E-11 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RD1_RS18745 ca2777ca2b93293a0beeb36608ee393a 320 SUPERFAMILY SSF50129 289 317 9.43E-36 T 23-04-2016 IPR011032 GroES-like RD1_RS18745 ca2777ca2b93293a0beeb36608ee393a 320 SUPERFAMILY SSF50129 1 114 9.43E-36 T 23-04-2016 IPR011032 GroES-like RD1_RS18745 ca2777ca2b93293a0beeb36608ee393a 320 Gene3D G3DSA:3.90.180.10 1 145 3.9E-42 T 23-04-2016 IPR011032 GroES-like RD1_RS17555 226ebb89bdecf8cfae75b0f1557374ee 227 PANTHER PTHR14859 1 156 1.0E-16 T 23-04-2016 IPR027317 PGAP2-interacting protein RD1_RS17555 226ebb89bdecf8cfae75b0f1557374ee 227 Gene3D G3DSA:3.60.10.10 1 154 1.8E-10 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS17555 226ebb89bdecf8cfae75b0f1557374ee 227 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 213 4.5E-14 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS17555 226ebb89bdecf8cfae75b0f1557374ee 227 SUPERFAMILY SSF56219 2 218 1.2E-32 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS06780 4317755727930fff8a55365ce411c5e2 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 402 9.0E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS06780 4317755727930fff8a55365ce411c5e2 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 436 9.0E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS06780 4317755727930fff8a55365ce411c5e2 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 455 9.0E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS06780 4317755727930fff8a55365ce411c5e2 468 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 349 456 1.7E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS06780 4317755727930fff8a55365ce411c5e2 468 SUPERFAMILY SSF47384 232 304 2.16E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS06780 4317755727930fff8a55365ce411c5e2 468 Gene3D G3DSA:1.10.287.130 234 290 6.8E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS06780 4317755727930fff8a55365ce411c5e2 468 PANTHER PTHR24423:SF534 173 455 4.3E-52 T 23-04-2016 RD1_RS06780 4317755727930fff8a55365ce411c5e2 468 PANTHER PTHR24423 173 455 4.3E-52 T 23-04-2016 RD1_RS06780 4317755727930fff8a55365ce411c5e2 468 SMART SM00387 348 458 1.1E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS06780 4317755727930fff8a55365ce411c5e2 468 SMART SM00388 241 305 4.5E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS06780 4317755727930fff8a55365ce411c5e2 468 Gene3D G3DSA:3.30.565.10 309 455 6.6E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS06780 4317755727930fff8a55365ce411c5e2 468 SUPERFAMILY SSF55874 303 456 7.07E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS18165 e962b1c8c2dca8de08571ed0d0603db4 593 SUPERFAMILY SSF47203 285 468 1.22E-48 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS18165 e962b1c8c2dca8de08571ed0d0603db4 593 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 155 8.9E-14 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS18165 e962b1c8c2dca8de08571ed0d0603db4 593 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 461 589 3.0E-33 T 23-04-2016 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain RD1_RS18165 e962b1c8c2dca8de08571ed0d0603db4 593 SUPERFAMILY SSF56645 38 290 2.23E-57 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RD1_RS18165 e962b1c8c2dca8de08571ed0d0603db4 593 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 161 269 1.2E-16 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RD1_RS18165 e962b1c8c2dca8de08571ed0d0603db4 593 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 32 1.2E-8 T 23-04-2016 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria RD1_RS18165 e962b1c8c2dca8de08571ed0d0603db4 593 PANTHER PTHR10909:SF154 1 472 4.2E-205 T 23-04-2016 RD1_RS18165 e962b1c8c2dca8de08571ed0d0603db4 593 Gene3D G3DSA:1.10.540.10 39 157 1.9E-17 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS18165 e962b1c8c2dca8de08571ed0d0603db4 593 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 281 445 1.3E-18 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS18165 e962b1c8c2dca8de08571ed0d0603db4 593 Gene3D G3DSA:2.40.110.10 160 269 1.7E-26 T 23-04-2016 RD1_RS18165 e962b1c8c2dca8de08571ed0d0603db4 593 Gene3D G3DSA:1.20.140.10 270 454 1.7E-47 T 23-04-2016 RD1_RS18165 e962b1c8c2dca8de08571ed0d0603db4 593 PANTHER PTHR10909 1 472 4.2E-205 T 23-04-2016 RD1_RS09910 d97c4c8efe581098cf7c07119792e776 479 SUPERFAMILY SSF55103 193 468 4.09E-53 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RD1_RS09910 d97c4c8efe581098cf7c07119792e776 479 SUPERFAMILY SSF56176 9 220 2.88E-62 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RD1_RS09910 d97c4c8efe581098cf7c07119792e776 479 Gene3D G3DSA:3.30.465.10 100 220 6.6E-34 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RD1_RS09910 d97c4c8efe581098cf7c07119792e776 479 Pfam PF02913 FAD linked oxidases, C-terminal domain 220 468 9.0E-48 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RD1_RS09910 d97c4c8efe581098cf7c07119792e776 479 Gene3D G3DSA:3.30.43.10 36 98 5.6E-14 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RD1_RS09910 d97c4c8efe581098cf7c07119792e776 479 Gene3D G3DSA:1.10.45.10 429 466 9.9E-13 T 23-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RD1_RS09910 d97c4c8efe581098cf7c07119792e776 479 PANTHER PTHR11748:SF76 12 469 1.0E-158 T 23-04-2016 RD1_RS09910 d97c4c8efe581098cf7c07119792e776 479 Pfam PF01565 FAD binding domain 44 180 1.4E-32 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RD1_RS09910 d97c4c8efe581098cf7c07119792e776 479 PANTHER PTHR11748 12 469 1.0E-158 T 23-04-2016 RD1_RS07025 3abdac9c41a6f54a1ca0c2dc9d7a1c27 345 SUPERFAMILY SSF46626 38 171 1.43E-20 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07025 3abdac9c41a6f54a1ca0c2dc9d7a1c27 345 PANTHER PTHR11961:SF6 113 342 1.9E-26 T 23-04-2016 RD1_RS07025 3abdac9c41a6f54a1ca0c2dc9d7a1c27 345 Gene3D G3DSA:1.10.760.10 52 175 2.1E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07025 3abdac9c41a6f54a1ca0c2dc9d7a1c27 345 PRINTS PR00604 Class IA and IB cytochrome C signature 334 342 4.7E-16 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07025 3abdac9c41a6f54a1ca0c2dc9d7a1c27 345 PRINTS PR00604 Class IA and IB cytochrome C signature 317 327 4.7E-16 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07025 3abdac9c41a6f54a1ca0c2dc9d7a1c27 345 PRINTS PR00604 Class IA and IB cytochrome C signature 252 259 4.7E-16 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07025 3abdac9c41a6f54a1ca0c2dc9d7a1c27 345 PRINTS PR00604 Class IA and IB cytochrome C signature 298 314 4.7E-16 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07025 3abdac9c41a6f54a1ca0c2dc9d7a1c27 345 PRINTS PR00604 Class IA and IB cytochrome C signature 265 280 4.7E-16 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07025 3abdac9c41a6f54a1ca0c2dc9d7a1c27 345 PRINTS PR00604 Class IA and IB cytochrome C signature 281 291 4.7E-16 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS07025 3abdac9c41a6f54a1ca0c2dc9d7a1c27 345 Pfam PF00034 Cytochrome c 243 342 3.5E-6 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07025 3abdac9c41a6f54a1ca0c2dc9d7a1c27 345 Gene3D G3DSA:1.10.760.10 243 343 3.0E-36 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07025 3abdac9c41a6f54a1ca0c2dc9d7a1c27 345 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 60 140 1.0E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07025 3abdac9c41a6f54a1ca0c2dc9d7a1c27 345 SUPERFAMILY SSF46626 243 344 2.97E-31 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07025 3abdac9c41a6f54a1ca0c2dc9d7a1c27 345 PANTHER PTHR11961 113 342 1.9E-26 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS13850 34be76ec351dbf7b64b24b93e3284237 431 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 204 430 7.4E-79 T 23-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 RD1_RS13850 34be76ec351dbf7b64b24b93e3284237 431 SUPERFAMILY SSF52777 204 430 4.89E-79 T 23-04-2016 RD1_RS13850 34be76ec351dbf7b64b24b93e3284237 431 Pfam PF02817 e3 binding domain 126 161 1.7E-17 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RD1_RS13850 34be76ec351dbf7b64b24b93e3284237 431 TIGRFAM TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 4 430 1.6E-157 T 23-04-2016 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex GO:0004742|GO:0006090|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 RD1_RS13850 34be76ec351dbf7b64b24b93e3284237 431 SUPERFAMILY SSF51230 1 97 1.7E-29 T 23-04-2016 IPR011053 Single hybrid motif RD1_RS13850 34be76ec351dbf7b64b24b93e3284237 431 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RD1_RS13850 34be76ec351dbf7b64b24b93e3284237 431 PANTHER PTHR23151:SF9 203 430 1.3E-197 T 23-04-2016 RD1_RS13850 34be76ec351dbf7b64b24b93e3284237 431 PANTHER PTHR23151:SF9 3 184 1.3E-197 T 23-04-2016 RD1_RS13850 34be76ec351dbf7b64b24b93e3284237 431 SUPERFAMILY SSF47005 120 163 1.2E-12 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RD1_RS13850 34be76ec351dbf7b64b24b93e3284237 431 PANTHER PTHR23151 203 430 1.3E-197 T 23-04-2016 RD1_RS13850 34be76ec351dbf7b64b24b93e3284237 431 PANTHER PTHR23151 3 184 1.3E-197 T 23-04-2016 RD1_RS13850 34be76ec351dbf7b64b24b93e3284237 431 Pfam PF00364 Biotin-requiring enzyme 4 77 4.1E-21 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RD1_RS13850 34be76ec351dbf7b64b24b93e3284237 431 Gene3D G3DSA:3.30.559.10 204 430 3.0E-86 T 23-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain RD1_RS13850 34be76ec351dbf7b64b24b93e3284237 431 Gene3D G3DSA:4.10.320.10 121 172 1.8E-20 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RD1_RS13850 34be76ec351dbf7b64b24b93e3284237 431 Gene3D G3DSA:2.40.50.100 1 97 8.3E-34 T 23-04-2016 RD1_RS08055 ed674b042c63a330b24b0a24ee1bb6f1 245 Gene3D G3DSA:3.30.70.1400 4 87 2.3E-24 T 23-04-2016 RD1_RS08055 ed674b042c63a330b24b0a24ee1bb6f1 245 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 128 192 1.1E-22 T 23-04-2016 IPR017703 YgfZ/GcvT conserved site RD1_RS08055 ed674b042c63a330b24b0a24ee1bb6f1 245 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 167 226 3.7E-6 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS08055 ed674b042c63a330b24b0a24ee1bb6f1 245 PANTHER PTHR22602:SF0 4 234 2.1E-49 T 23-04-2016 RD1_RS08055 ed674b042c63a330b24b0a24ee1bb6f1 245 PANTHER PTHR22602 4 234 2.1E-49 T 23-04-2016 RD1_RS08055 ed674b042c63a330b24b0a24ee1bb6f1 245 Pfam PF01571 Aminomethyltransferase folate-binding domain 3 89 4.2E-8 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS08055 ed674b042c63a330b24b0a24ee1bb6f1 245 SUPERFAMILY SSF103025 3 181 6.28E-46 T 23-04-2016 RD1_RS17075 9634e96053b52d10da6d7ebe896239f0 362 Gene3D G3DSA:3.40.50.300 2 234 1.5E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17075 9634e96053b52d10da6d7ebe896239f0 362 Gene3D G3DSA:2.40.50.140 287 346 1.5E-8 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS17075 9634e96053b52d10da6d7ebe896239f0 362 Pfam PF00005 ABC transporter 19 161 2.2E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS17075 9634e96053b52d10da6d7ebe896239f0 362 SUPERFAMILY SSF50331 237 361 4.25E-21 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS17075 9634e96053b52d10da6d7ebe896239f0 362 PANTHER PTHR24220:SF151 5 286 1.0E-142 T 23-04-2016 RD1_RS17075 9634e96053b52d10da6d7ebe896239f0 362 Gene3D G3DSA:2.40.50.100 239 286 3.8E-10 T 23-04-2016 RD1_RS17075 9634e96053b52d10da6d7ebe896239f0 362 Gene3D G3DSA:2.40.50.100 348 361 3.8E-10 T 23-04-2016 RD1_RS17075 9634e96053b52d10da6d7ebe896239f0 362 Pfam PF08402 TOBE domain 283 354 2.2E-5 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS17075 9634e96053b52d10da6d7ebe896239f0 362 SMART SM00382 28 219 5.5E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS17075 9634e96053b52d10da6d7ebe896239f0 362 SUPERFAMILY SSF52540 4 242 1.02E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17075 9634e96053b52d10da6d7ebe896239f0 362 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS17075 9634e96053b52d10da6d7ebe896239f0 362 PANTHER PTHR24220 5 286 1.0E-142 T 23-04-2016 RD1_RS02470 5f22882fc21ce9eb16d07c4c9030dc6e 133 Gene3D G3DSA:3.40.250.10 9 126 1.2E-28 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS02470 5f22882fc21ce9eb16d07c4c9030dc6e 133 SUPERFAMILY SSF52821 10 126 6.55E-27 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS02470 5f22882fc21ce9eb16d07c4c9030dc6e 133 Pfam PF00581 Rhodanese-like domain 26 121 9.2E-14 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS02470 5f22882fc21ce9eb16d07c4c9030dc6e 133 SMART SM00450 22 125 1.1E-14 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS10450 ed20561411577079f125c59ed3168a41 222 SUPERFAMILY SSF52317 1 215 1.18E-72 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS10450 ed20561411577079f125c59ed3168a41 222 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 217 40.1 T 23-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS10450 ed20561411577079f125c59ed3168a41 222 PANTHER PTHR10099 1 215 1.1E-98 T 23-04-2016 RD1_RS10450 ed20561411577079f125c59ed3168a41 222 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 2 200 6.3E-39 T 23-04-2016 RD1_RS10450 ed20561411577079f125c59ed3168a41 222 SMART SM01211 1 219 5.0E-123 T 23-04-2016 RD1_RS10450 ed20561411577079f125c59ed3168a41 222 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 216 1.3E-83 T 23-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS10450 ed20561411577079f125c59ed3168a41 222 Gene3D G3DSA:3.40.50.880 2 204 1.8E-38 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS10450 ed20561411577079f125c59ed3168a41 222 PIRSF PIRSF001586 1 221 7.1E-80 T 23-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS17105 0557b5a6fc090fd11bc9475bfa4f5f05 441 PANTHER PTHR10566:SF65 3 437 7.7E-134 T 23-04-2016 RD1_RS17105 0557b5a6fc090fd11bc9475bfa4f5f05 441 Pfam PF03109 ABC1 family 125 235 4.1E-29 T 23-04-2016 IPR004147 UbiB domain RD1_RS17105 0557b5a6fc090fd11bc9475bfa4f5f05 441 PANTHER PTHR10566 3 437 7.7E-134 T 23-04-2016 RD1_RS17105 0557b5a6fc090fd11bc9475bfa4f5f05 441 SUPERFAMILY SSF56112 102 165 1.53E-17 T 23-04-2016 IPR011009 Protein kinase-like domain RD1_RS17105 0557b5a6fc090fd11bc9475bfa4f5f05 441 SUPERFAMILY SSF56112 197 319 1.53E-17 T 23-04-2016 IPR011009 Protein kinase-like domain RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 Gene3D G3DSA:3.40.1060.10 256 373 1.8E-35 T 23-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 Pfam PF00694 Aconitase C-terminal domain 694 819 7.3E-43 T 23-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PANTHER PTHR11670 418 653 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PANTHER PTHR11670 752 895 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PANTHER PTHR11670 669 714 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PANTHER PTHR11670 10 399 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 Pfam PF00330 Aconitase family (aconitate hydratase) 82 564 3.6E-179 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 Gene3D G3DSA:3.30.499.10 375 577 2.2E-61 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 ProSitePatterns PS01244 Aconitase family signature 2. 495 508 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 SUPERFAMILY SSF52016 633 891 9.03E-83 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 ProSitePatterns PS00450 Aconitase family signature 1. 429 445 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 SUPERFAMILY SSF53732 9 629 3.01E-215 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 22 891 0.0 T 23-04-2016 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PANTHER PTHR11670:SF1 418 653 0.0 T 23-04-2016 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PANTHER PTHR11670:SF1 752 895 0.0 T 23-04-2016 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PANTHER PTHR11670:SF1 669 714 0.0 T 23-04-2016 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PANTHER PTHR11670:SF1 10 399 0.0 T 23-04-2016 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PRINTS PR00415 Aconitase family signature 209 222 1.8E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PRINTS PR00415 Aconitase family signature 495 508 1.8E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PRINTS PR00415 Aconitase family signature 175 183 1.8E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PRINTS PR00415 Aconitase family signature 285 298 1.8E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PRINTS PR00415 Aconitase family signature 223 238 1.8E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PRINTS PR00415 Aconitase family signature 433 444 1.8E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PRINTS PR00415 Aconitase family signature 378 392 1.8E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PRINTS PR00415 Aconitase family signature 299 312 1.8E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 PRINTS PR00415 Aconitase family signature 151 164 1.8E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 Gene3D G3DSA:3.20.19.10 640 891 6.7E-78 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RD1_RS11775 488cf7c0d9833d971cbf0565cc91a2e1 895 Gene3D G3DSA:3.30.499.10 25 255 1.3E-75 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 Hamap MF_00141 Elongation factor P [efp]. 3 187 43.527 T 23-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 SUPERFAMILY SSF50249 67 131 1.51E-16 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 SMART SM01185 69 123 2.0E-20 T 23-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 Gene3D G3DSA:2.30.30.30 4 65 1.1E-25 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 SMART SM00841 131 186 2.0E-26 T 23-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 Gene3D G3DSA:2.40.50.140 130 187 1.8E-22 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 SUPERFAMILY SSF50104 4 65 1.32E-18 T 23-04-2016 IPR008991 Translation protein SH3-like domain RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 PANTHER PTHR30053 3 187 2.2E-77 T 23-04-2016 RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 TIGRFAM TIGR00038 efp: translation elongation factor P 4 187 2.5E-70 T 23-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 Pfam PF09285 Elongation factor P, C-terminal 131 186 2.1E-21 T 23-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 PIRSF PIRSF005901 2 187 3.3E-69 T 23-04-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 SUPERFAMILY SSF50249 131 187 5.48E-16 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 Gene3D G3DSA:2.40.50.140 67 129 1.3E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 122 2.4E-19 T 23-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 23-04-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 RD1_RS08050 d13766290783eec3f6b9e45ee9e3a82e 187 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 6 62 7.2E-23 T 23-04-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 RD1_RS00160 1683761ad1ca2107a6961b18114a4265 442 PANTHER PTHR11895 7 441 2.3E-96 T 23-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS00160 1683761ad1ca2107a6961b18114a4265 442 SUPERFAMILY SSF75304 4 441 1.83E-110 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS00160 1683761ad1ca2107a6961b18114a4265 442 Pfam PF01425 Amidase 25 431 7.8E-78 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS00160 1683761ad1ca2107a6961b18114a4265 442 ProSitePatterns PS00571 Amidases signature. 153 184 - T 23-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS00160 1683761ad1ca2107a6961b18114a4265 442 Gene3D G3DSA:3.90.1300.10 3 441 1.3E-109 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 Gene3D G3DSA:3.40.50.1260 4 174 1.1E-60 T 23-04-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 23-04-2016 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 7.6E-75 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 PRINTS PR00477 Phosphoglycerate kinase family signature 348 359 7.6E-75 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 7.6E-75 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 7.6E-75 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 PRINTS PR00477 Phosphoglycerate kinase family signature 133 155 7.6E-75 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 PRINTS PR00477 Phosphoglycerate kinase family signature 371 388 7.6E-75 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 7.6E-75 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 PRINTS PR00477 Phosphoglycerate kinase family signature 105 120 7.6E-75 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 PRINTS PR00477 Phosphoglycerate kinase family signature 311 336 7.6E-75 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 Gene3D G3DSA:3.40.50.1270 175 383 3.8E-68 T 23-04-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 SUPERFAMILY SSF53748 3 394 2.71E-131 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 PIRSF PIRSF000724 1 395 2.1E-127 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 Pfam PF00162 Phosphoglycerate kinase 6 385 3.3E-129 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 5 395 36.114 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS13830 48430b6dfdf6e7a727d74229eb90e6c2 395 PANTHER PTHR11406 1 393 4.3E-157 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 SUPERFAMILY SSF51120 752 902 5.86E-27 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 70 88 2.01E-6 T 23-04-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 744 765 2.01E-6 T 23-04-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Gene3D G3DSA:2.150.10.10 421 535 4.7E-11 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Gene3D G3DSA:2.150.10.10 714 899 1.5E-39 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Gene3D G3DSA:2.150.10.10 69 213 4.4E-21 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Gene3D G3DSA:2.150.10.10 228 388 2.7E-16 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Gene3D G3DSA:2.150.10.10 582 713 6.0E-30 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 SUPERFAMILY SSF51120 572 649 1.66E-12 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 SUPERFAMILY SSF51120 259 402 1.23E-14 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 SUPERFAMILY SSF51120 68 256 5.23E-20 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 476 492 0.42 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 304 321 0.28 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 789 805 0.4 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 152 168 1.8 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 698 715 6.0E-4 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 440 454 6.2 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 133 150 0.091 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 806 823 0.052 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 322 338 7.3 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 653 669 0.077 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 115 132 0.053 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 753 769 0.019 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 770 787 0.074 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 82 99 0.19 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 671 688 0.25 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 600 616 2.3 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 717 733 0.088 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 173 188 24.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 459 473 0.48 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 636 651 0.0056 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 833 849 0.27 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 271 288 1.6 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 SUPERFAMILY SSF51120 430 532 3.4E-13 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 PRINTS PR00313 NodO calcium binding signature 116 124 1.88E-6 T 23-04-2016 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 PRINTS PR00313 NodO calcium binding signature 161 170 1.88E-6 T 23-04-2016 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 PRINTS PR00313 NodO calcium binding signature 89 100 1.88E-6 T 23-04-2016 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 PRINTS PR00313 NodO calcium binding signature 134 142 1.88E-6 T 23-04-2016 RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 740 758 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 731 749 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 310 328 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 758 776 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 614 632 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 605 623 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 821 839 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 812 830 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 794 812 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 803 821 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 139 157 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 121 139 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20470 bee8ef4b2a887fbda41fdc24101444c5 961 SUPERFAMILY SSF51120 631 797 3.14E-24 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 Gene3D G3DSA:3.30.300.10 143 240 1.7E-35 T 23-04-2016 RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 SUPERFAMILY SSF55973 240 391 3.14E-65 T 23-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 SUPERFAMILY SSF55973 5 115 7.06E-36 T 23-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 266 274 - T 23-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 SUPERFAMILY SSF55973 119 239 1.61E-46 T 23-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 5 108 4.7E-36 T 23-04-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 PANTHER PTHR11964:SF1 1 388 2.0E-196 T 23-04-2016 RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 Pfam PF02772 S-adenosylmethionine synthetase, central domain 122 238 3.7E-38 T 23-04-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 123 133 - T 23-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 240 382 2.1E-65 T 23-04-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 7 392 2.8E-152 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 PANTHER PTHR11964 1 388 2.0E-196 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 Gene3D G3DSA:3.30.300.10 251 392 5.7E-66 T 23-04-2016 RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 4 393 50.629 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 Gene3D G3DSA:3.30.300.10 13 142 4.7E-37 T 23-04-2016 RD1_RS17930 c476904a885a7753cdc906fbf4f7c612 393 PIRSF PIRSF000497 1 393 1.7E-157 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RD1_RS19260 4f353fff922e035092b4bc431de7472d 555 Gene3D G3DSA:3.90.550.10 16 233 3.7E-46 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS19260 4f353fff922e035092b4bc431de7472d 555 SUPERFAMILY SSF53756 248 551 3.04E-9 T 23-04-2016 RD1_RS19260 4f353fff922e035092b4bc431de7472d 555 Pfam PF02348 Cytidylyltransferase 19 139 4.5E-17 T 23-04-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RD1_RS19260 4f353fff922e035092b4bc431de7472d 555 SUPERFAMILY SSF53448 16 235 5.39E-37 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS19260 4f353fff922e035092b4bc431de7472d 555 PANTHER PTHR21485:SF20 15 254 1.6E-46 T 23-04-2016 RD1_RS19260 4f353fff922e035092b4bc431de7472d 555 Gene3D G3DSA:3.40.50.2000 381 530 2.7E-9 T 23-04-2016 RD1_RS19260 4f353fff922e035092b4bc431de7472d 555 PANTHER PTHR21485 15 254 1.6E-46 T 23-04-2016 RD1_RS01370 d52abcdd021a9abd3c1bcbd6b8d0bc89 331 PANTHER PTHR30160 43 314 2.0E-56 T 23-04-2016 RD1_RS01370 d52abcdd021a9abd3c1bcbd6b8d0bc89 331 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 18 322 3.2E-91 T 23-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RD1_RS01370 d52abcdd021a9abd3c1bcbd6b8d0bc89 331 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 20 323 1.2E-60 T 23-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RD1_RS01370 d52abcdd021a9abd3c1bcbd6b8d0bc89 331 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 2 330 33.466 T 23-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RD1_RS01370 d52abcdd021a9abd3c1bcbd6b8d0bc89 331 PANTHER PTHR30160:SF13 43 314 2.0E-56 T 23-04-2016 RD1_RS18930 a16366c372baf532ed571d6342b182f7 311 PANTHER PTHR30346 2 311 1.4E-61 T 23-04-2016 RD1_RS18930 a16366c372baf532ed571d6342b182f7 311 SUPERFAMILY SSF46785 3 112 3.72E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18930 a16366c372baf532ed571d6342b182f7 311 Pfam PF03466 LysR substrate binding domain 91 296 4.8E-36 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS18930 a16366c372baf532ed571d6342b182f7 311 Gene3D G3DSA:1.10.10.10 3 82 1.2E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18930 a16366c372baf532ed571d6342b182f7 311 SUPERFAMILY SSF53850 92 299 7.21E-37 T 23-04-2016 RD1_RS18930 a16366c372baf532ed571d6342b182f7 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 7.3E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS18930 a16366c372baf532ed571d6342b182f7 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 7.3E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS18930 a16366c372baf532ed571d6342b182f7 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 7.3E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS18930 a16366c372baf532ed571d6342b182f7 311 Gene3D G3DSA:3.40.190.10 179 269 1.9E-31 T 23-04-2016 RD1_RS18930 a16366c372baf532ed571d6342b182f7 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 66 1.1E-18 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS18930 a16366c372baf532ed571d6342b182f7 311 Gene3D G3DSA:3.40.190.10 94 178 2.6E-17 T 23-04-2016 RD1_RS19195 43cb0ed0a7cfea4f26bef42b9a327a88 688 SUPERFAMILY SSF55486 230 457 5.13E-34 T 23-04-2016 RD1_RS19195 43cb0ed0a7cfea4f26bef42b9a327a88 688 Gene3D G3DSA:1.10.390.10 330 459 5.0E-10 T 23-04-2016 RD1_RS19195 43cb0ed0a7cfea4f26bef42b9a327a88 688 PANTHER PTHR11533:SF185 171 456 4.9E-14 T 23-04-2016 RD1_RS19195 43cb0ed0a7cfea4f26bef42b9a327a88 688 PANTHER PTHR11533 171 456 4.9E-14 T 23-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 RD1_RS02650 14b2dfef204a7d63fa41b0ec807447cb 287 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 12 264 1.2E-19 T 23-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD RD1_RS02650 14b2dfef204a7d63fa41b0ec807447cb 287 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 156 273 4.5E-12 T 23-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD RD1_RS19380 149573eae010b853aad8518889ccf6c9 558 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 3 558 48.056 T 23-04-2016 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 RD1_RS19380 149573eae010b853aad8518889ccf6c9 558 SUPERFAMILY SSF52540 6 556 7.08E-248 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS19380 149573eae010b853aad8518889ccf6c9 558 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 330 341 - T 23-04-2016 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 RD1_RS19380 149573eae010b853aad8518889ccf6c9 558 Pfam PF01268 Formate--tetrahydrofolate ligase 4 558 1.3E-268 T 23-04-2016 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 RD1_RS19380 149573eae010b853aad8518889ccf6c9 558 PANTHER PTHR10025 5 557 0.0 T 23-04-2016 RD1_RS19380 149573eae010b853aad8518889ccf6c9 558 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 105 115 - T 23-04-2016 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 RD1_RS19380 149573eae010b853aad8518889ccf6c9 558 Gene3D G3DSA:3.40.50.300 250 443 3.0E-149 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS19380 149573eae010b853aad8518889ccf6c9 558 Gene3D G3DSA:3.40.50.300 15 130 3.0E-149 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS19380 149573eae010b853aad8518889ccf6c9 558 Gene3D G3DSA:3.10.410.10 445 534 2.4E-37 T 23-04-2016 RD1_RS19380 149573eae010b853aad8518889ccf6c9 558 Gene3D G3DSA:3.30.1510.10 131 249 1.7E-54 T 23-04-2016 RD1_RS08835 9608107db16ae4220ac7909f986ca960 104 Gene3D G3DSA:1.10.472.20 5 89 7.7E-13 T 23-04-2016 RD1_RS08835 9608107db16ae4220ac7909f986ca960 104 SUPERFAMILY SSF50090 2 102 1.77E-20 T 23-04-2016 IPR008990 Electron transport accessory protein-like domain RD1_RS08835 9608107db16ae4220ac7909f986ca960 104 TIGRFAM TIGR03889 nitrile_acc: nitrile hydratase accessory protein 8 80 5.5E-33 T 23-04-2016 IPR023808 Nitrile hydratase accessory protein, putative RD1_RS08835 9608107db16ae4220ac7909f986ca960 104 Pfam PF02211 Nitrile hydratase beta subunit 3 88 5.0E-8 T 23-04-2016 IPR024690 Nitrile hydratase beta subunit domain GO:0018822 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 RD1_RS06410 e0457bd21750e7adbf215ddf4cb6db6f 309 SMART SM00893 3 181 5.1E-45 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RD1_RS06410 e0457bd21750e7adbf215ddf4cb6db6f 309 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 189 271 4.3E-37 T 23-04-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal RD1_RS06410 e0457bd21750e7adbf215ddf4cb6db6f 309 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 252 278 - T 23-04-2016 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site RD1_RS06410 e0457bd21750e7adbf215ddf4cb6db6f 309 Gene3D G3DSA:3.40.50.1220 184 308 1.5E-61 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS06410 e0457bd21750e7adbf215ddf4cb6db6f 309 Pfam PF01012 Electron transfer flavoprotein domain 4 168 1.4E-29 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RD1_RS06410 e0457bd21750e7adbf215ddf4cb6db6f 309 Gene3D G3DSA:3.40.50.620 1 180 3.0E-50 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS06410 e0457bd21750e7adbf215ddf4cb6db6f 309 SUPERFAMILY SSF52402 3 182 2.18E-46 T 23-04-2016 RD1_RS06410 e0457bd21750e7adbf215ddf4cb6db6f 309 PANTHER PTHR10909 104 307 5.3E-112 T 23-04-2016 RD1_RS06410 e0457bd21750e7adbf215ddf4cb6db6f 309 PANTHER PTHR10909:SF294 104 307 5.3E-112 T 23-04-2016 RD1_RS06410 e0457bd21750e7adbf215ddf4cb6db6f 309 SUPERFAMILY SSF52467 186 308 7.05E-49 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS06410 e0457bd21750e7adbf215ddf4cb6db6f 309 PIRSF PIRSF000089 1 309 8.0E-105 T 23-04-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 RD1_RS13855 2ba240a5808bc18c49d831816474f84e 270 Gene3D G3DSA:1.10.3130.10 11 134 9.0E-49 T 23-04-2016 RD1_RS13855 2ba240a5808bc18c49d831816474f84e 270 PANTHER PTHR23416:SF2 10 261 8.1E-125 T 23-04-2016 RD1_RS13855 2ba240a5808bc18c49d831816474f84e 270 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 87 247 1.4E-67 T 23-04-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 RD1_RS13855 2ba240a5808bc18c49d831816474f84e 270 SUPERFAMILY SSF51161 14 264 5.68E-65 T 23-04-2016 IPR011004 Trimeric LpxA-like RD1_RS13855 2ba240a5808bc18c49d831816474f84e 270 SMART SM00971 14 118 8.5E-60 T 23-04-2016 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 RD1_RS13855 2ba240a5808bc18c49d831816474f84e 270 Gene3D G3DSA:2.160.10.10 135 253 9.3E-28 T 23-04-2016 RD1_RS13855 2ba240a5808bc18c49d831816474f84e 270 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 198 231 7.1E-9 T 23-04-2016 IPR001451 Hexapeptide repeat RD1_RS13855 2ba240a5808bc18c49d831816474f84e 270 Pfam PF06426 Serine acetyltransferase, N-terminal 14 118 1.6E-38 T 23-04-2016 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 RD1_RS13855 2ba240a5808bc18c49d831816474f84e 270 PANTHER PTHR23416 10 261 8.1E-125 T 23-04-2016 RD1_RS13855 2ba240a5808bc18c49d831816474f84e 270 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 207 235 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RD1_RS14710 7facd4cacbf8cbb09546b589fa2f2c65 503 Pfam PF04715 Anthranilate synthase component I, N terminal region 29 173 2.3E-28 T 23-04-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RD1_RS14710 7facd4cacbf8cbb09546b589fa2f2c65 503 SUPERFAMILY SSF56322 21 490 3.27E-153 T 23-04-2016 IPR005801 ADC synthase GO:0009058 RD1_RS14710 7facd4cacbf8cbb09546b589fa2f2c65 503 Gene3D G3DSA:3.60.120.10 20 492 3.8E-167 T 23-04-2016 IPR005801 ADC synthase GO:0009058 RD1_RS14710 7facd4cacbf8cbb09546b589fa2f2c65 503 PRINTS PR00095 Anthranilate synthase component I signature 425 439 5.95E-24 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RD1_RS14710 7facd4cacbf8cbb09546b589fa2f2c65 503 PRINTS PR00095 Anthranilate synthase component I signature 331 344 5.95E-24 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RD1_RS14710 7facd4cacbf8cbb09546b589fa2f2c65 503 PRINTS PR00095 Anthranilate synthase component I signature 345 358 5.95E-24 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RD1_RS14710 7facd4cacbf8cbb09546b589fa2f2c65 503 PRINTS PR00095 Anthranilate synthase component I signature 440 454 5.95E-24 T 23-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RD1_RS14710 7facd4cacbf8cbb09546b589fa2f2c65 503 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 29 491 1.6E-169 T 23-04-2016 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RD1_RS14710 7facd4cacbf8cbb09546b589fa2f2c65 503 Pfam PF00425 chorismate binding enzyme 230 483 1.0E-98 T 23-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal RD1_RS14710 7facd4cacbf8cbb09546b589fa2f2c65 503 PANTHER PTHR11236 1 490 4.9E-214 T 23-04-2016 RD1_RS14710 7facd4cacbf8cbb09546b589fa2f2c65 503 PANTHER PTHR11236:SF9 1 490 4.9E-214 T 23-04-2016 RD1_RS12780 132a7263bf85d2a394c1cd237b2ae49a 305 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 292 4.0E-133 T 23-04-2016 RD1_RS12780 132a7263bf85d2a394c1cd237b2ae49a 305 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 300 1.7E-109 T 23-04-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 RD1_RS12780 132a7263bf85d2a394c1cd237b2ae49a 305 SUPERFAMILY SSF52317 17 295 6.11E-105 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS12780 132a7263bf85d2a394c1cd237b2ae49a 305 PANTHER PTHR20919 2 305 1.1E-117 T 23-04-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 RD1_RS12780 132a7263bf85d2a394c1cd237b2ae49a 305 PANTHER PTHR20919:SF0 2 305 1.1E-117 T 23-04-2016 RD1_RS12780 132a7263bf85d2a394c1cd237b2ae49a 305 Gene3D G3DSA:3.40.50.880 34 299 1.2E-117 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS12780 132a7263bf85d2a394c1cd237b2ae49a 305 Pfam PF04204 Homoserine O-succinyltransferase 2 298 3.4E-131 T 23-04-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 RD1_RS12780 132a7263bf85d2a394c1cd237b2ae49a 305 PIRSF PIRSF000450 1 305 2.1E-135 T 23-04-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 RD1_RS12780 132a7263bf85d2a394c1cd237b2ae49a 305 Hamap MF_00295 Homoserine O-succinyltransferase [metA]. 1 300 49.119 T 23-04-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 RD1_RS05555 ca41623480891df2eb315616069aff6a 379 Pfam PF01098 Cell cycle protein 27 376 1.1E-95 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RD1_RS05555 ca41623480891df2eb315616069aff6a 379 PANTHER PTHR30474:SF1 3 379 2.0E-124 T 23-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 RD1_RS05555 ca41623480891df2eb315616069aff6a 379 PANTHER PTHR30474 3 379 2.0E-124 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RD1_RS05555 ca41623480891df2eb315616069aff6a 379 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 22 377 1.1E-125 T 23-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 RD1_RS04795 d38cda41253e2e58838aee1092b688de 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 130 8.6E-11 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RD1_RS04795 d38cda41253e2e58838aee1092b688de 324 SUPERFAMILY SSF50129 2 149 8.96E-38 T 23-04-2016 IPR011032 GroES-like RD1_RS04795 d38cda41253e2e58838aee1092b688de 324 Gene3D G3DSA:3.90.180.10 2 145 2.1E-49 T 23-04-2016 IPR011032 GroES-like RD1_RS04795 d38cda41253e2e58838aee1092b688de 324 PANTHER PTHR11695 16 324 5.3E-127 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS04795 d38cda41253e2e58838aee1092b688de 324 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 140 161 - T 23-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 RD1_RS04795 d38cda41253e2e58838aee1092b688de 324 SUPERFAMILY SSF51735 111 263 3.95E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS04795 d38cda41253e2e58838aee1092b688de 324 Pfam PF00107 Zinc-binding dehydrogenase 151 255 2.0E-27 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RD1_RS04795 d38cda41253e2e58838aee1092b688de 324 Gene3D G3DSA:3.40.50.720 146 254 3.0E-31 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS04795 d38cda41253e2e58838aee1092b688de 324 SMART SM00829 11 322 1.4E-39 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RD1_RS04795 d38cda41253e2e58838aee1092b688de 324 PANTHER PTHR11695:SF605 16 324 5.3E-127 T 23-04-2016 RD1_RS12720 8ba3ba52ecc38012a9aef9b0f109aba0 181 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 11 175 6.6E-64 T 23-04-2016 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620|UniPathway: UPA00591 RD1_RS12720 8ba3ba52ecc38012a9aef9b0f109aba0 181 SUPERFAMILY SSF53271 5 178 1.7E-50 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS12720 8ba3ba52ecc38012a9aef9b0f109aba0 181 Gene3D G3DSA:3.40.50.2020 6 176 3.0E-70 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS12720 8ba3ba52ecc38012a9aef9b0f109aba0 181 Pfam PF00156 Phosphoribosyl transferase domain 15 162 2.3E-26 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RD1_RS12720 8ba3ba52ecc38012a9aef9b0f109aba0 181 PANTHER PTHR22573:SF56 11 173 1.2E-67 T 23-04-2016 RD1_RS12720 8ba3ba52ecc38012a9aef9b0f109aba0 181 PANTHER PTHR22573 11 173 1.2E-67 T 23-04-2016 RD1_RS01075 811e3ce0e31a64b22c8d8e908ab1a6dc 403 SUPERFAMILY SSF58104 326 389 6.02E-6 T 23-04-2016 RD1_RS01075 811e3ce0e31a64b22c8d8e908ab1a6dc 403 SUPERFAMILY SSF58104 222 255 6.02E-6 T 23-04-2016 RD1_RS01075 811e3ce0e31a64b22c8d8e908ab1a6dc 403 SMART SM00304 199 253 3.0E-5 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS16655 aa7c7cfe817ebea1c4bbe8493c2f9a4c 296 PANTHER PTHR32243 1 296 8.2E-89 T 23-04-2016 RD1_RS16655 aa7c7cfe817ebea1c4bbe8493c2f9a4c 296 SUPERFAMILY SSF161098 3 295 1.59E-64 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS16655 aa7c7cfe817ebea1c4bbe8493c2f9a4c 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 289 1.7E-22 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS16655 aa7c7cfe817ebea1c4bbe8493c2f9a4c 296 Gene3D G3DSA:1.10.3720.10 4 282 1.2E-57 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS16655 aa7c7cfe817ebea1c4bbe8493c2f9a4c 296 PANTHER PTHR32243:SF11 1 296 8.2E-89 T 23-04-2016 RD1_RS05325 accfb03190972e009e697236e046dc56 263 Pfam PF01061 ABC-2 type transporter 8 225 6.1E-32 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 RD1_RS05325 accfb03190972e009e697236e046dc56 263 PRINTS PR00164 ABC-2 type transport system membrane protein signature 203 222 4.9E-6 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RD1_RS05325 accfb03190972e009e697236e046dc56 263 PRINTS PR00164 ABC-2 type transport system membrane protein signature 26 47 4.9E-6 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RD1_RS05325 accfb03190972e009e697236e046dc56 263 PRINTS PR00164 ABC-2 type transport system membrane protein signature 143 167 4.9E-6 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RD1_RS05325 accfb03190972e009e697236e046dc56 263 TIGRFAM TIGR03861 phenyl_ABC_PedC: alcohol ABC transporter, permease protein 7 257 3.0E-128 T 23-04-2016 IPR022403 Alcohol ABC transporter, permease protein RD1_RS05325 accfb03190972e009e697236e046dc56 263 PANTHER PTHR30294 8 261 7.4E-75 T 23-04-2016 RD1_RS05325 accfb03190972e009e697236e046dc56 263 PANTHER PTHR30294:SF13 8 261 7.4E-75 T 23-04-2016 RD1_RS05325 accfb03190972e009e697236e046dc56 263 PIRSF PIRSF006648 6 256 3.6E-36 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 PANTHER PTHR18866 3 1146 0.0 T 23-04-2016 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 Gene3D G3DSA:3.20.20.70 510 818 1.2E-136 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 Gene3D G3DSA:3.30.470.20 208 457 2.3E-92 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 Pfam PF00682 HMGL-like 534 806 4.0E-31 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 Gene3D G3DSA:3.10.600.10 989 1066 2.8E-33 T 23-04-2016 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 Gene3D G3DSA:2.40.50.100 1071 1145 8.8E-23 T 23-04-2016 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 PIRSF PIRSF001594 1 1146 0.0 T 23-04-2016 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|UniPathway: UPA00138 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 Pfam PF02436 Conserved carboxylase domain 828 1028 1.1E-74 T 23-04-2016 IPR003379 Carboxylase, conserved domain RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 156 170 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 Gene3D G3DSA:3.40.50.20 4 132 1.5E-50 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 SUPERFAMILY SSF51246 340 458 1.41E-35 T 23-04-2016 IPR011054 Rudiment single hybrid motif RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 1102 1119 - T 23-04-2016 IPR001882 Biotin-binding site RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 Gene3D G3DSA:3.30.1490.20 133 205 1.3E-24 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 Gene3D G3DSA:1.10.10.60 951 988 1.3E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 TIGRFAM TIGR01235 pyruv_carbox: pyruvate carboxylase 6 1146 0.0 T 23-04-2016 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|UniPathway: UPA00138 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 290 297 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 Pfam PF00289 Biotin carboxylase, N-terminal domain 4 113 5.4E-40 T 23-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 SUPERFAMILY SSF89000 833 1011 2.75E-56 T 23-04-2016 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 PANTHER PTHR18866:SF103 3 1146 0.0 T 23-04-2016 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 SUPERFAMILY SSF52440 3 116 3.45E-43 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 Pfam PF00364 Biotin-requiring enzyme 1079 1144 2.4E-13 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 SUPERFAMILY SSF56059 86 343 1.22E-60 T 23-04-2016 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 SMART SM00878 345 452 1.2E-45 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 SUPERFAMILY SSF51569 525 836 8.61E-87 T 23-04-2016 RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 SUPERFAMILY SSF51230 1068 1146 7.72E-19 T 23-04-2016 IPR011053 Single hybrid motif RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 Pfam PF02785 Biotin carboxylase C-terminal domain 345 453 1.4E-32 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RD1_RS15495 5458112d4a18c6c08f37935b6b5e997e 1146 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 118 327 1.7E-68 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 885 191.398 T 23-04-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 SUPERFAMILY SSF101353 246 459 6.28E-58 T 23-04-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 SUPERFAMILY SSF50447 452 550 1.06E-18 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 SUPERFAMILY SSF55681 3 244 2.49E-105 T 23-04-2016 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 PANTHER PTHR11777:SF9 1 885 0.0 T 23-04-2016 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 PRINTS PR00980 Alanyl-tRNA synthetase signature 297 310 1.4E-31 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 PRINTS PR00980 Alanyl-tRNA synthetase signature 75 86 1.4E-31 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 PRINTS PR00980 Alanyl-tRNA synthetase signature 198 209 1.4E-31 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 PRINTS PR00980 Alanyl-tRNA synthetase signature 225 238 1.4E-31 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 PRINTS PR00980 Alanyl-tRNA synthetase signature 273 289 1.4E-31 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 PANTHER PTHR11777 1 885 0.0 T 23-04-2016 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 Pfam PF01411 tRNA synthetases class II (A) 6 553 6.6E-217 T 23-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 Gene3D G3DSA:3.30.930.10 3 240 7.3E-114 T 23-04-2016 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 651 706 7.4E-15 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 Pfam PF02272 DHHA1 domain 811 880 9.9E-11 T 23-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 SMART SM00863 651 706 1.5E-16 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 6 865 7.3E-288 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RD1_RS12450 1c9ae775d5635d2d1e0fafe85f868b14 885 SUPERFAMILY SSF55186 550 720 5.62E-46 T 23-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 RD1_RS17170 157b2cea069104480062075e09aa2a17 304 Gene3D G3DSA:1.10.3720.10 13 292 3.9E-56 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17170 157b2cea069104480062075e09aa2a17 304 SUPERFAMILY SSF161098 17 304 2.52E-60 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17170 157b2cea069104480062075e09aa2a17 304 PANTHER PTHR32243 12 304 1.6E-71 T 23-04-2016 RD1_RS17170 157b2cea069104480062075e09aa2a17 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 298 2.0E-17 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17170 157b2cea069104480062075e09aa2a17 304 PANTHER PTHR32243:SF11 12 304 1.6E-71 T 23-04-2016 RD1_RS13675 7409f1ecb1c4645431d60a32abcb3568 263 SMART SM01092 169 262 9.3E-20 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RD1_RS13675 7409f1ecb1c4645431d60a32abcb3568 263 Gene3D G3DSA:3.30.390.50 169 262 4.1E-15 T 23-04-2016 RD1_RS13675 7409f1ecb1c4645431d60a32abcb3568 263 SUPERFAMILY SSF55447 167 262 7.59E-20 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RD1_RS13675 7409f1ecb1c4645431d60a32abcb3568 263 SUPERFAMILY SSF56176 1 165 4.0E-46 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RD1_RS13675 7409f1ecb1c4645431d60a32abcb3568 263 Gene3D G3DSA:3.30.43.10 1 50 6.9E-15 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RD1_RS13675 7409f1ecb1c4645431d60a32abcb3568 263 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 165 8.9E-37 T 23-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RD1_RS13675 7409f1ecb1c4645431d60a32abcb3568 263 PANTHER PTHR11908:SF68 3 262 4.8E-63 T 23-04-2016 RD1_RS13675 7409f1ecb1c4645431d60a32abcb3568 263 Gene3D G3DSA:3.30.465.10 61 164 1.6E-27 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RD1_RS13675 7409f1ecb1c4645431d60a32abcb3568 263 PANTHER PTHR11908 3 262 4.8E-63 T 23-04-2016 RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 436 7.8E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 414 7.8E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 456 7.8E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 PANTHER PTHR24421:SF1 254 472 4.9E-49 T 23-04-2016 RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 PANTHER PTHR24421:SF1 8 58 4.9E-49 T 23-04-2016 RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 Pfam PF07730 Histidine kinase 259 325 1.5E-16 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 PANTHER PTHR24421 254 472 4.9E-49 T 23-04-2016 RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 PANTHER PTHR24421 8 58 4.9E-49 T 23-04-2016 RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 PIRSF PIRSF037314 6 472 2.4E-191 T 23-04-2016 IPR017171 Signal transduction histidine kinase, MctS RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 SUPERFAMILY SSF55874 366 459 4.73E-15 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 367 458 2.4E-7 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 Gene3D G3DSA:3.30.565.10 348 458 1.2E-8 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 Pfam PF17200 Single Cache domain 2 54 198 8.1E-29 T 23-04-2016 IPR033480 Single Cache domain 2 RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 SMART SM01049 51 142 3.1E-22 T 23-04-2016 IPR033480 Single Cache domain 2 RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 SMART SM00387 364 459 1.3E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12905 394bb6d4ff763ac834c9a307ddf2b8b3 477 Gene3D G3DSA:3.30.450.20 43 193 1.1E-39 T 23-04-2016 RD1_RS13985 9e1895c8e1494908065de53122ec1d5c 117 SUPERFAMILY SSF54995 1 104 4.58E-32 T 23-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS13985 9e1895c8e1494908065de53122ec1d5c 117 PANTHER PTHR21011:SF1 1 117 4.3E-23 T 23-04-2016 RD1_RS13985 9e1895c8e1494908065de53122ec1d5c 117 TIGRFAM TIGR00166 S6: ribosomal protein bS6 2 94 3.3E-22 T 23-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS13985 9e1895c8e1494908065de53122ec1d5c 117 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 95 19.463 T 23-04-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS13985 9e1895c8e1494908065de53122ec1d5c 117 PANTHER PTHR21011 1 117 4.3E-23 T 23-04-2016 RD1_RS13985 9e1895c8e1494908065de53122ec1d5c 117 Pfam PF01250 Ribosomal protein S6 4 92 2.0E-26 T 23-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS13985 9e1895c8e1494908065de53122ec1d5c 117 Gene3D G3DSA:3.30.70.60 1 104 2.4E-33 T 23-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RD1_RS04755 2e7de831b1a5c13642bada19110e0f51 381 PANTHER PTHR21266 15 368 2.9E-75 T 23-04-2016 RD1_RS04755 2e7de831b1a5c13642bada19110e0f51 381 Pfam PF00355 Rieske [2Fe-2S] domain 49 131 1.2E-19 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS04755 2e7de831b1a5c13642bada19110e0f51 381 SUPERFAMILY SSF50022 16 161 3.14E-48 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS04755 2e7de831b1a5c13642bada19110e0f51 381 Gene3D G3DSA:3.90.380.10 152 304 1.4E-17 T 23-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 RD1_RS04755 2e7de831b1a5c13642bada19110e0f51 381 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 183 375 2.8E-19 T 23-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 RD1_RS04755 2e7de831b1a5c13642bada19110e0f51 381 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 63 78 5.8E-19 T 23-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 RD1_RS04755 2e7de831b1a5c13642bada19110e0f51 381 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 145 171 5.8E-19 T 23-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 RD1_RS04755 2e7de831b1a5c13642bada19110e0f51 381 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 33 58 5.8E-19 T 23-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 RD1_RS04755 2e7de831b1a5c13642bada19110e0f51 381 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 182 204 5.8E-19 T 23-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 RD1_RS04755 2e7de831b1a5c13642bada19110e0f51 381 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 104 124 5.8E-19 T 23-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 RD1_RS04755 2e7de831b1a5c13642bada19110e0f51 381 PANTHER PTHR21266:SF2 15 368 2.9E-75 T 23-04-2016 RD1_RS04755 2e7de831b1a5c13642bada19110e0f51 381 Gene3D G3DSA:2.102.10.10 48 151 2.3E-28 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS04755 2e7de831b1a5c13642bada19110e0f51 381 SUPERFAMILY SSF55961 162 372 7.85E-35 T 23-04-2016 RD1_RS08105 c7d5e1622e3399d5b0a9e3206ef0b9e2 765 PANTHER PTHR11908:SF85 3 764 5.0E-250 T 23-04-2016 RD1_RS08105 c7d5e1622e3399d5b0a9e3206ef0b9e2 765 PANTHER PTHR11908 3 764 5.0E-250 T 23-04-2016 RD1_RS08105 c7d5e1622e3399d5b0a9e3206ef0b9e2 765 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 20 140 1.5E-24 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS08105 c7d5e1622e3399d5b0a9e3206ef0b9e2 765 Gene3D G3DSA:3.30.365.10 183 286 1.9E-31 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS08105 c7d5e1622e3399d5b0a9e3206ef0b9e2 765 Gene3D G3DSA:3.30.365.10 288 364 3.7E-39 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS08105 c7d5e1622e3399d5b0a9e3206ef0b9e2 765 Gene3D G3DSA:3.30.365.10 129 182 3.7E-39 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS08105 c7d5e1622e3399d5b0a9e3206ef0b9e2 765 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 152 695 1.0E-150 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS08105 c7d5e1622e3399d5b0a9e3206ef0b9e2 765 SUPERFAMILY SSF54665 7 147 3.4E-41 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS08105 c7d5e1622e3399d5b0a9e3206ef0b9e2 765 Gene3D G3DSA:3.30.365.10 466 621 4.0E-32 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS08105 c7d5e1622e3399d5b0a9e3206ef0b9e2 765 Gene3D G3DSA:3.30.365.10 622 759 6.6E-64 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS08105 c7d5e1622e3399d5b0a9e3206ef0b9e2 765 Gene3D G3DSA:3.30.365.10 367 465 6.6E-64 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS08105 c7d5e1622e3399d5b0a9e3206ef0b9e2 765 Gene3D G3DSA:3.90.1170.50 8 128 4.1E-39 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS08105 c7d5e1622e3399d5b0a9e3206ef0b9e2 765 SMART SM01008 20 140 9.1E-50 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS08105 c7d5e1622e3399d5b0a9e3206ef0b9e2 765 SUPERFAMILY SSF56003 132 758 4.84E-183 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS08775 8a3c14894ec25f260fbdd4b9979b4560 242 Gene3D G3DSA:3.40.190.10 124 187 2.4E-9 T 23-04-2016 RD1_RS08775 8a3c14894ec25f260fbdd4b9979b4560 242 PANTHER PTHR18966:SF152 5 238 7.5E-41 T 23-04-2016 RD1_RS08775 8a3c14894ec25f260fbdd4b9979b4560 242 Gene3D G3DSA:3.40.190.10 198 237 1.6E-36 T 23-04-2016 RD1_RS08775 8a3c14894ec25f260fbdd4b9979b4560 242 Gene3D G3DSA:3.40.190.10 25 112 1.6E-36 T 23-04-2016 RD1_RS08775 8a3c14894ec25f260fbdd4b9979b4560 242 SUPERFAMILY SSF53850 1 237 3.34E-54 T 23-04-2016 RD1_RS08775 8a3c14894ec25f260fbdd4b9979b4560 242 SMART SM00079 26 238 0.0017 T 23-04-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 RD1_RS08775 8a3c14894ec25f260fbdd4b9979b4560 242 PANTHER PTHR18966 5 238 7.5E-41 T 23-04-2016 RD1_RS08775 8a3c14894ec25f260fbdd4b9979b4560 242 SMART SM00062 26 238 7.7E-46 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD1_RS08775 8a3c14894ec25f260fbdd4b9979b4560 242 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 236 8.9E-51 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD1_RS04605 d57bab0fbf92722c8960b9945d6014c4 150 ProSitePatterns PS00519 AsnC-type HTH domain signature. 22 48 - T 23-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RD1_RS04605 d57bab0fbf92722c8960b9945d6014c4 150 PANTHER PTHR30154 1 150 2.2E-57 T 23-04-2016 RD1_RS04605 d57bab0fbf92722c8960b9945d6014c4 150 SMART SM00344 4 113 7.1E-40 T 23-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RD1_RS04605 d57bab0fbf92722c8960b9945d6014c4 150 PANTHER PTHR30154:SF23 1 150 2.2E-57 T 23-04-2016 RD1_RS04605 d57bab0fbf92722c8960b9945d6014c4 150 Pfam PF01037 Lrp/AsnC ligand binding domain 70 142 4.4E-20 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS04605 d57bab0fbf92722c8960b9945d6014c4 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 1.9E-15 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS04605 d57bab0fbf92722c8960b9945d6014c4 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 1.9E-15 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS04605 d57bab0fbf92722c8960b9945d6014c4 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 1.9E-15 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS04605 d57bab0fbf92722c8960b9945d6014c4 150 Gene3D G3DSA:3.30.70.920 57 141 1.7E-25 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS04605 d57bab0fbf92722c8960b9945d6014c4 150 SUPERFAMILY SSF54909 66 149 2.28E-18 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS04605 d57bab0fbf92722c8960b9945d6014c4 150 SUPERFAMILY SSF46785 4 63 1.69E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04605 d57bab0fbf92722c8960b9945d6014c4 150 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 51 1.7E-18 T 23-04-2016 RD1_RS04605 d57bab0fbf92722c8960b9945d6014c4 150 Gene3D G3DSA:1.10.10.10 9 56 3.7E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11490 5f5bba8a655121dfd81410fdfe21b28e 125 Pfam PF02635 DsrE/DsrF-like family 6 125 2.7E-10 T 23-04-2016 IPR003787 Sulphur relay, DsrE/F-like protein RD1_RS11490 5f5bba8a655121dfd81410fdfe21b28e 125 SUPERFAMILY SSF75169 1 125 8.24E-11 T 23-04-2016 IPR027396 DsrEFH-like RD1_RS11490 5f5bba8a655121dfd81410fdfe21b28e 125 Gene3D G3DSA:3.40.1260.10 1 125 3.8E-10 T 23-04-2016 IPR027396 DsrEFH-like RD1_RS09180 710bed7977ed5066162d04c3ec9b09d1 368 PANTHER PTHR37826:SF1 16 368 1.1E-57 T 23-04-2016 RD1_RS09180 710bed7977ed5066162d04c3ec9b09d1 368 Pfam PF11781 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 11 41 1.1E-6 T 23-04-2016 IPR021752 Transcription initiation factor Rrn7, Zinc-finger RD1_RS09180 710bed7977ed5066162d04c3ec9b09d1 368 Gene3D G3DSA:2.20.25.10 8 39 2.2E-4 T 23-04-2016 RD1_RS09180 710bed7977ed5066162d04c3ec9b09d1 368 PANTHER PTHR37826 16 368 1.1E-57 T 23-04-2016 RD1_RS00105 7da9e973e860102c79c9cc11cd0438b6 151 Gene3D G3DSA:3.30.450.40 6 137 1.4E-35 T 23-04-2016 IPR029016 GAF domain-like RD1_RS00105 7da9e973e860102c79c9cc11cd0438b6 151 Pfam PF13185 GAF domain 43 139 4.7E-7 T 23-04-2016 IPR003018 GAF domain GO:0005515 RD1_RS00105 7da9e973e860102c79c9cc11cd0438b6 151 SUPERFAMILY SSF55781 8 138 2.08E-31 T 23-04-2016 IPR029016 GAF domain-like RD1_RS00105 7da9e973e860102c79c9cc11cd0438b6 151 PANTHER PTHR21021 5 137 1.6E-32 T 23-04-2016 RD1_RS04480 b1a72ea2e33eee22bb75ff2020594144 291 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 286 64.624 T 23-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS04480 b1a72ea2e33eee22bb75ff2020594144 291 Gene3D G3DSA:3.20.20.70 1 290 3.2E-117 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS04480 b1a72ea2e33eee22bb75ff2020594144 291 SMART SM01130 1 288 4.7E-146 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RD1_RS04480 b1a72ea2e33eee22bb75ff2020594144 291 PIRSF PIRSF001365 1 291 3.8E-95 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RD1_RS04480 b1a72ea2e33eee22bb75ff2020594144 291 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 37 54 - T 23-04-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS04480 b1a72ea2e33eee22bb75ff2020594144 291 PANTHER PTHR12128:SF34 1 291 1.5E-128 T 23-04-2016 RD1_RS04480 b1a72ea2e33eee22bb75ff2020594144 291 Pfam PF00701 Dihydrodipicolinate synthetase family 2 285 3.2E-94 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RD1_RS04480 b1a72ea2e33eee22bb75ff2020594144 291 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 132 162 - T 23-04-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS04480 b1a72ea2e33eee22bb75ff2020594144 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 34 55 1.7E-34 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RD1_RS04480 b1a72ea2e33eee22bb75ff2020594144 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 70 88 1.7E-34 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RD1_RS04480 b1a72ea2e33eee22bb75ff2020594144 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 102 118 1.7E-34 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RD1_RS04480 b1a72ea2e33eee22bb75ff2020594144 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 127 144 1.7E-34 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RD1_RS04480 b1a72ea2e33eee22bb75ff2020594144 291 PANTHER PTHR12128 1 291 1.5E-128 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RD1_RS04480 b1a72ea2e33eee22bb75ff2020594144 291 SUPERFAMILY SSF51569 2 288 6.18E-106 T 23-04-2016 RD1_RS04480 b1a72ea2e33eee22bb75ff2020594144 291 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 5 284 1.0E-101 T 23-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS04790 38794ab91d31ccf8c07f006cdace1d4f 328 Gene3D G3DSA:3.40.50.720 150 263 3.1E-30 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS04790 38794ab91d31ccf8c07f006cdace1d4f 328 PANTHER PTHR11695 19 328 3.8E-134 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS04790 38794ab91d31ccf8c07f006cdace1d4f 328 Pfam PF00107 Zinc-binding dehydrogenase 155 272 2.2E-29 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RD1_RS04790 38794ab91d31ccf8c07f006cdace1d4f 328 SMART SM00829 14 324 4.6E-46 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RD1_RS04790 38794ab91d31ccf8c07f006cdace1d4f 328 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 5 326 9.8E-142 T 23-04-2016 IPR014189 Quinone oxidoreductase PIG3 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- RD1_RS04790 38794ab91d31ccf8c07f006cdace1d4f 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 91 5.1E-8 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RD1_RS04790 38794ab91d31ccf8c07f006cdace1d4f 328 PANTHER PTHR11695:SF610 19 328 3.8E-134 T 23-04-2016 RD1_RS04790 38794ab91d31ccf8c07f006cdace1d4f 328 SUPERFAMILY SSF51735 115 288 2.08E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS04790 38794ab91d31ccf8c07f006cdace1d4f 328 SUPERFAMILY SSF50129 5 144 1.29E-38 T 23-04-2016 IPR011032 GroES-like RD1_RS04790 38794ab91d31ccf8c07f006cdace1d4f 328 Gene3D G3DSA:3.90.180.10 4 149 2.0E-48 T 23-04-2016 IPR011032 GroES-like RD1_RS07365 83fd8701b1e564a831b2b2c330fcb073 863 TIGRFAM TIGR02302 aProt_lowcomp: TIGR02302 family protein 25 861 8.9E-130 T 23-04-2016 IPR012683 Conserved hypothetical protein CHP02302, transmembrane RD1_RS07365 83fd8701b1e564a831b2b2c330fcb073 863 Pfam PF13779 Domain of unknown function (DUF4175) 30 861 1.4E-259 T 23-04-2016 IPR012683 Conserved hypothetical protein CHP02302, transmembrane RD1_RS06155 140b724a0ccc09b11b1c0d2539f30b72 324 PANTHER PTHR32419 1 323 3.2E-165 T 23-04-2016 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 RD1_RS06155 140b724a0ccc09b11b1c0d2539f30b72 324 PANTHER PTHR32419:SF6 1 323 3.2E-165 T 23-04-2016 RD1_RS06155 140b724a0ccc09b11b1c0d2539f30b72 324 Pfam PF13410 Glutathione S-transferase, C-terminal domain 204 273 4.8E-11 T 23-04-2016 RD1_RS06155 140b724a0ccc09b11b1c0d2539f30b72 324 Pfam PF13409 Glutathione S-transferase, N-terminal domain 62 158 8.7E-21 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RD1_RS06155 140b724a0ccc09b11b1c0d2539f30b72 324 Gene3D G3DSA:1.20.1050.10 178 288 1.1E-21 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS06155 140b724a0ccc09b11b1c0d2539f30b72 324 PIRSF PIRSF015753 5 324 1.2E-129 T 23-04-2016 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 RD1_RS06155 140b724a0ccc09b11b1c0d2539f30b72 324 Gene3D G3DSA:3.40.30.10 36 167 1.2E-15 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS06155 140b724a0ccc09b11b1c0d2539f30b72 324 SUPERFAMILY SSF52833 41 99 5.74E-13 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS06155 140b724a0ccc09b11b1c0d2539f30b72 324 SUPERFAMILY SSF52833 126 162 5.74E-13 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS06155 140b724a0ccc09b11b1c0d2539f30b72 324 SUPERFAMILY SSF47616 183 323 1.95E-35 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS00445 3d9bd6869a715c9b148cd332c5c0d7da 116 PANTHER PTHR36114 1 116 6.2E-20 T 23-04-2016 RD1_RS00445 3d9bd6869a715c9b148cd332c5c0d7da 116 SUPERFAMILY SSF51182 1 106 2.38E-27 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS00445 3d9bd6869a715c9b148cd332c5c0d7da 116 Gene3D G3DSA:2.60.120.10 1 105 5.0E-38 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS00445 3d9bd6869a715c9b148cd332c5c0d7da 116 Pfam PF07883 Cupin domain 35 95 1.8E-13 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RD1_RS06955 bd9f4845dd40c9927eeb1a900e94cb81 234 PANTHER PTHR24220 3 220 2.7E-100 T 23-04-2016 RD1_RS06955 bd9f4845dd40c9927eeb1a900e94cb81 234 Gene3D G3DSA:3.40.50.300 1 220 1.6E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06955 bd9f4845dd40c9927eeb1a900e94cb81 234 Pfam PF00005 ABC transporter 18 161 1.2E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS06955 bd9f4845dd40c9927eeb1a900e94cb81 234 PANTHER PTHR24220:SF568 3 220 2.7E-100 T 23-04-2016 RD1_RS06955 bd9f4845dd40c9927eeb1a900e94cb81 234 SUPERFAMILY SSF52540 2 224 6.77E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06955 bd9f4845dd40c9927eeb1a900e94cb81 234 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS06955 bd9f4845dd40c9927eeb1a900e94cb81 234 SMART SM00382 26 200 1.7E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS09240 2e734033afd25805585dc6a19da86edb 212 PANTHER PTHR30417 1 162 3.6E-55 T 23-04-2016 RD1_RS09240 2e734033afd25805585dc6a19da86edb 212 SMART SM00644 8 141 3.6E-37 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RD1_RS09240 2e734033afd25805585dc6a19da86edb 212 SUPERFAMILY SSF55846 3 156 6.28E-54 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RD1_RS09240 2e734033afd25805585dc6a19da86edb 212 Gene3D G3DSA:3.40.80.10 3 156 1.3E-55 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RD1_RS09240 2e734033afd25805585dc6a19da86edb 212 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 22 142 9.7E-24 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RD1_RS02545 96750464af574bde823e48056e1436a9 289 Pfam PF00348 Polyprenyl synthetase 31 257 5.7E-51 T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RD1_RS02545 96750464af574bde823e48056e1436a9 289 SUPERFAMILY SSF48576 18 278 2.47E-75 T 23-04-2016 IPR008949 Isoprenoid synthase domain RD1_RS02545 96750464af574bde823e48056e1436a9 289 PANTHER PTHR12001 2 263 1.2E-87 T 23-04-2016 IPR017446 Polyprenyl synthetase-related RD1_RS02545 96750464af574bde823e48056e1436a9 289 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 77 93 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RD1_RS02545 96750464af574bde823e48056e1436a9 289 Gene3D G3DSA:1.10.600.10 3 287 8.4E-80 T 23-04-2016 IPR008949 Isoprenoid synthase domain RD1_RS02545 96750464af574bde823e48056e1436a9 289 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 208 220 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RD1_RS02545 96750464af574bde823e48056e1436a9 289 PANTHER PTHR12001:SF23 2 263 1.2E-87 T 23-04-2016 RD1_RS04350 30f66bc9625b78f9a2c562e0d32322de 281 SUPERFAMILY SSF82689 182 277 4.45E-26 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RD1_RS04350 30f66bc9625b78f9a2c562e0d32322de 281 SUPERFAMILY SSF82861 30 113 2.09E-16 T 23-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RD1_RS04350 30f66bc9625b78f9a2c562e0d32322de 281 Gene3D G3DSA:2.30.30.60 130 179 2.4E-14 T 23-04-2016 RD1_RS04350 30f66bc9625b78f9a2c562e0d32322de 281 SUPERFAMILY SSF50182 115 180 1.73E-16 T 23-04-2016 IPR010920 LSM domain RD1_RS04350 30f66bc9625b78f9a2c562e0d32322de 281 PANTHER PTHR30221:SF7 24 276 4.5E-69 T 23-04-2016 RD1_RS04350 30f66bc9625b78f9a2c562e0d32322de 281 PANTHER PTHR30221 24 276 4.5E-69 T 23-04-2016 RD1_RS04350 30f66bc9625b78f9a2c562e0d32322de 281 Gene3D G3DSA:3.30.70.100 182 266 1.5E-21 T 23-04-2016 RD1_RS04350 30f66bc9625b78f9a2c562e0d32322de 281 Pfam PF00924 Mechanosensitive ion channel 72 269 4.7E-48 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RD1_RS07845 7772d321b9b1ab48c7c272a93abf90a8 399 PANTHER PTHR23344 354 398 5.1E-55 T 23-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 RD1_RS07845 7772d321b9b1ab48c7c272a93abf90a8 399 PANTHER PTHR23344 37 336 5.1E-55 T 23-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 RD1_RS07845 7772d321b9b1ab48c7c272a93abf90a8 399 PANTHER PTHR23344:SF7 354 398 5.1E-55 T 23-04-2016 RD1_RS07845 7772d321b9b1ab48c7c272a93abf90a8 399 PANTHER PTHR23344:SF7 37 336 5.1E-55 T 23-04-2016 RD1_RS07845 7772d321b9b1ab48c7c272a93abf90a8 399 Gene3D G3DSA:3.20.20.190 57 390 6.8E-54 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RD1_RS07845 7772d321b9b1ab48c7c272a93abf90a8 399 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 59 387 4.7E-19 T 23-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RD1_RS07845 7772d321b9b1ab48c7c272a93abf90a8 399 SUPERFAMILY SSF51695 57 392 2.46E-64 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RD1_RS16905 5629a5916bda965c2d029b6a0a08a88e 513 Pfam PF00221 Aromatic amino acid lyase 11 470 1.4E-171 T 23-04-2016 IPR001106 Aromatic amino acid lyase RD1_RS16905 5629a5916bda965c2d029b6a0a08a88e 513 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 4 502 3.8E-198 T 23-04-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RD1_RS16905 5629a5916bda965c2d029b6a0a08a88e 513 PANTHER PTHR10362 2 498 3.5E-210 T 23-04-2016 RD1_RS16905 5629a5916bda965c2d029b6a0a08a88e 513 SUPERFAMILY SSF48557 3 499 7.61E-181 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 RD1_RS16905 5629a5916bda965c2d029b6a0a08a88e 513 Gene3D G3DSA:1.10.275.10 2 196 7.1E-69 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal RD1_RS16905 5629a5916bda965c2d029b6a0a08a88e 513 PANTHER PTHR10362:SF7 2 498 3.5E-210 T 23-04-2016 RD1_RS16905 5629a5916bda965c2d029b6a0a08a88e 513 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 2 504 42.474 T 23-04-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RD1_RS16905 5629a5916bda965c2d029b6a0a08a88e 513 Gene3D G3DSA:1.20.200.10 197 501 3.4E-113 T 23-04-2016 RD1_RS16905 5629a5916bda965c2d029b6a0a08a88e 513 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 138 154 - T 23-04-2016 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 RD1_RS10870 82fa41cee7b0aa7d4bc55ff674a62dbe 147 SUPERFAMILY SSF53927 3 145 1.13E-39 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RD1_RS10870 82fa41cee7b0aa7d4bc55ff674a62dbe 147 PANTHER PTHR11079 1 147 8.5E-57 T 23-04-2016 RD1_RS10870 82fa41cee7b0aa7d4bc55ff674a62dbe 147 Gene3D G3DSA:3.40.140.10 3 136 1.6E-38 T 23-04-2016 RD1_RS10870 82fa41cee7b0aa7d4bc55ff674a62dbe 147 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 54 88 - T 23-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RD1_RS10870 82fa41cee7b0aa7d4bc55ff674a62dbe 147 PANTHER PTHR11079:SF63 1 147 8.5E-57 T 23-04-2016 RD1_RS10870 82fa41cee7b0aa7d4bc55ff674a62dbe 147 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 5 99 3.4E-21 T 23-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 RD1_RS04255 7a9e579044a3f1f056d1295fded150a7 237 SMART SM00895 102 228 1.2E-17 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS04255 7a9e579044a3f1f056d1295fded150a7 237 Gene3D G3DSA:1.20.120.530 102 228 5.5E-21 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS04255 7a9e579044a3f1f056d1295fded150a7 237 Gene3D G3DSA:1.10.10.10 22 87 7.4E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04255 7a9e579044a3f1f056d1295fded150a7 237 SUPERFAMILY SSF46785 19 85 4.37E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04255 7a9e579044a3f1f056d1295fded150a7 237 PANTHER PTHR11751 22 118 5.0E-26 T 23-04-2016 RD1_RS04255 7a9e579044a3f1f056d1295fded150a7 237 Pfam PF07729 FCD domain 106 226 6.3E-23 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS04255 7a9e579044a3f1f056d1295fded150a7 237 SMART SM00345 22 81 1.9E-22 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS04255 7a9e579044a3f1f056d1295fded150a7 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 81 4.1E-21 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS04255 7a9e579044a3f1f056d1295fded150a7 237 SUPERFAMILY SSF48008 101 229 3.92E-20 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS04255 7a9e579044a3f1f056d1295fded150a7 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 4.9E-11 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS04255 7a9e579044a3f1f056d1295fded150a7 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 4.9E-11 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 SUPERFAMILY SSF54665 166 289 3.66E-27 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 Gene3D G3DSA:3.30.365.10 597 754 1.5E-31 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 66 2.9E-5 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 Pfam PF01799 [2Fe-2S] binding domain 91 153 2.9E-22 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 Gene3D G3DSA:3.30.365.10 334 437 3.6E-31 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 306 848 9.0E-153 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 Gene3D G3DSA:1.10.150.120 90 155 6.9E-26 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 SUPERFAMILY SSF56003 293 909 2.36E-176 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 181 288 5.5E-12 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 Gene3D G3DSA:3.30.365.10 439 512 3.1E-32 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 Gene3D G3DSA:3.30.365.10 290 333 3.1E-32 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 Gene3D G3DSA:3.10.20.30 10 81 8.8E-20 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 SUPERFAMILY SSF47741 92 158 3.14E-25 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 SUPERFAMILY SSF54292 10 83 2.88E-17 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 46 54 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 SMART SM01008 180 289 4.0E-24 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 PANTHER PTHR11908 167 710 9.3E-192 T 23-04-2016 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 PANTHER PTHR11908 740 913 9.3E-192 T 23-04-2016 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 Gene3D G3DSA:3.90.1170.50 166 287 4.2E-25 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 Gene3D G3DSA:3.30.365.10 755 908 1.4E-59 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS07095 c1b1177bf8c7eabc478041637510c025 913 Gene3D G3DSA:3.30.365.10 513 547 1.4E-59 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS00870 d153a1855d01e7df58085b3c511fc22c 278 PANTHER PTHR31223 100 269 7.9E-59 T 23-04-2016 RD1_RS00870 d153a1855d01e7df58085b3c511fc22c 278 SUPERFAMILY SSF102405 37 263 9.01E-58 T 23-04-2016 RD1_RS00870 d153a1855d01e7df58085b3c511fc22c 278 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 123 263 1.2E-28 T 23-04-2016 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG RD1_RS00870 d153a1855d01e7df58085b3c511fc22c 278 PANTHER PTHR31223:SF1 100 269 7.9E-59 T 23-04-2016 RD1_RS00870 d153a1855d01e7df58085b3c511fc22c 278 Pfam PF03641 Possible lysine decarboxylase 133 262 2.3E-34 T 23-04-2016 IPR031100 LOG family RD1_RS00870 d153a1855d01e7df58085b3c511fc22c 278 Gene3D G3DSA:3.40.50.450 49 268 2.0E-65 T 23-04-2016 RD1_RS03190 4883fc8bedba49f0a7d3e932671cc47b 252 Pfam PF07103 Protein of unknown function (DUF1365) 9 245 3.5E-56 T 23-04-2016 IPR010775 Protein of unknown function DUF1365 RD1_RS03190 4883fc8bedba49f0a7d3e932671cc47b 252 PANTHER PTHR33973 10 246 5.7E-37 T 23-04-2016 RD1_RS09385 20453ee81bda1f1f354e4ff1d7854fc4 409 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 19 393 8.9E-71 T 23-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 RD1_RS09385 20453ee81bda1f1f354e4ff1d7854fc4 409 ProSitePatterns PS00216 Sugar transport proteins signature 1. 71 87 - T 23-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RD1_RS09385 20453ee81bda1f1f354e4ff1d7854fc4 409 Pfam PF07690 Major Facilitator Superfamily 21 361 6.7E-41 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS09385 20453ee81bda1f1f354e4ff1d7854fc4 409 Gene3D G3DSA:1.20.1250.20 19 187 7.9E-22 T 23-04-2016 RD1_RS09385 20453ee81bda1f1f354e4ff1d7854fc4 409 Gene3D G3DSA:1.20.1250.20 207 400 3.4E-13 T 23-04-2016 RD1_RS09385 20453ee81bda1f1f354e4ff1d7854fc4 409 PANTHER PTHR23502:SF19 18 406 7.0E-64 T 23-04-2016 RD1_RS09385 20453ee81bda1f1f354e4ff1d7854fc4 409 PRINTS PR01035 Tetracycline resistance protein signature 141 163 5.2E-5 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RD1_RS09385 20453ee81bda1f1f354e4ff1d7854fc4 409 PRINTS PR01035 Tetracycline resistance protein signature 341 364 5.2E-5 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RD1_RS09385 20453ee81bda1f1f354e4ff1d7854fc4 409 PRINTS PR01035 Tetracycline resistance protein signature 280 301 5.2E-5 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RD1_RS09385 20453ee81bda1f1f354e4ff1d7854fc4 409 PRINTS PR01035 Tetracycline resistance protein signature 27 43 5.2E-5 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RD1_RS09385 20453ee81bda1f1f354e4ff1d7854fc4 409 PRINTS PR01035 Tetracycline resistance protein signature 57 76 5.2E-5 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RD1_RS09385 20453ee81bda1f1f354e4ff1d7854fc4 409 PANTHER PTHR23502 18 406 7.0E-64 T 23-04-2016 RD1_RS09385 20453ee81bda1f1f354e4ff1d7854fc4 409 SUPERFAMILY SSF103473 11 401 1.83E-56 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS16680 9802471d3d4edd8056f008b0247df794 258 Pfam PF00121 Triosephosphate isomerase 7 244 9.4E-73 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RD1_RS16680 9802471d3d4edd8056f008b0247df794 258 PANTHER PTHR21139 1 244 2.1E-87 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RD1_RS16680 9802471d3d4edd8056f008b0247df794 258 SUPERFAMILY SSF51351 5 246 7.2E-77 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RD1_RS16680 9802471d3d4edd8056f008b0247df794 258 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 4 248 33.404 T 23-04-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RD1_RS16680 9802471d3d4edd8056f008b0247df794 258 Gene3D G3DSA:3.20.20.70 5 248 7.0E-86 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS16680 9802471d3d4edd8056f008b0247df794 258 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 9 235 1.3E-42 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 Pfam PF14450 Cell division protein FtsA 226 396 2.9E-19 T 23-04-2016 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 PANTHER PTHR32432 44 402 1.1E-83 T 23-04-2016 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 PANTHER PTHR32432 2 28 1.1E-83 T 23-04-2016 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 Gene3D G3DSA:3.30.420.40 320 374 4.2E-19 T 23-04-2016 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 Gene3D G3DSA:3.30.420.40 216 253 4.2E-19 T 23-04-2016 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 SUPERFAMILY SSF53067 14 216 3.02E-38 T 23-04-2016 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 PIRSF PIRSF003101 4 434 1.3E-103 T 23-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 Pfam PF02491 SHS2 domain inserted in FTSA 104 181 6.4E-17 T 23-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 44 398 1.9E-90 T 23-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 Gene3D G3DSA:3.90.640.10 254 319 1.4E-13 T 23-04-2016 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 Gene3D G3DSA:3.30.420.40 50 158 1.5E-12 T 23-04-2016 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 PANTHER PTHR32432:SF4 44 402 1.1E-83 T 23-04-2016 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 PANTHER PTHR32432:SF4 2 28 1.1E-83 T 23-04-2016 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 SMART SM00842 14 215 1.1E-73 T 23-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 Hamap MF_02033 Cell division protein FtsA [ftsA]. 10 434 24.434 T 23-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RD1_RS15385 145294688133e5bb66bc6286d9443b17 434 SUPERFAMILY SSF53067 218 399 5.9E-43 T 23-04-2016 RD1_RS07205 cb9a9bc48f7ad670b059af3db4d3672b 270 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 184 268 9.9E-31 T 23-04-2016 IPR013615 CbbQ/NirQ/NorQ, C-terminal RD1_RS07205 cb9a9bc48f7ad670b059af3db4d3672b 270 PANTHER PTHR22908 3 254 2.6E-38 T 23-04-2016 RD1_RS07205 cb9a9bc48f7ad670b059af3db4d3672b 270 SUPERFAMILY SSF52540 30 224 1.93E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07205 cb9a9bc48f7ad670b059af3db4d3672b 270 Gene3D G3DSA:3.40.50.300 27 188 2.6E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07205 cb9a9bc48f7ad670b059af3db4d3672b 270 Pfam PF07728 AAA domain (dynein-related subfamily) 37 171 1.2E-37 T 23-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RD1_RS12100 d03e4d614baf1e0925ec475a6a45027c 253 SUPERFAMILY SSF52540 34 250 8.8E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12100 d03e4d614baf1e0925ec475a6a45027c 253 SMART SM00382 47 223 2.7E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS12100 d03e4d614baf1e0925ec475a6a45027c 253 Pfam PF00005 ABC transporter 38 182 1.1E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS12100 d03e4d614baf1e0925ec475a6a45027c 253 Gene3D G3DSA:3.40.50.300 34 247 6.6E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12100 d03e4d614baf1e0925ec475a6a45027c 253 PANTHER PTHR24220:SF568 23 252 2.2E-89 T 23-04-2016 RD1_RS12100 d03e4d614baf1e0925ec475a6a45027c 253 PANTHER PTHR24220 23 252 2.2E-89 T 23-04-2016 RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 SMART SM01086 327 423 1.7E-18 T 23-04-2016 IPR019489 Clp ATPase, C-terminal RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 PANTHER PTHR11262:SF3 3 105 1.4E-197 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 PANTHER PTHR11262:SF3 210 435 1.4E-197 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 PANTHER PTHR11262 3 105 1.4E-197 T 23-04-2016 RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 PANTHER PTHR11262 210 435 1.4E-197 T 23-04-2016 RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 102 2.9E-5 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 Gene3D G3DSA:3.40.50.300 3 110 3.1E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 Gene3D G3DSA:3.40.50.300 237 323 3.1E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 Gene3D G3DSA:1.10.8.10 111 166 1.4E-22 T 23-04-2016 RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 Gene3D G3DSA:1.10.8.10 205 235 1.4E-22 T 23-04-2016 RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 Gene3D G3DSA:1.10.8.60 326 435 4.5E-34 T 23-04-2016 RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 435 1.0E-180 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 SUPERFAMILY SSF52540 4 431 5.16E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 SMART SM00382 49 324 7.7E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 435 40.775 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RD1_RS02080 fbcbd3d3bffe7445a894528636f781f8 435 Pfam PF07724 AAA domain (Cdc48 subfamily) 203 321 8.2E-38 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 Pfam PF13541 Subunit ChlI of Mg-chelatase 343 423 5.8E-8 T 23-04-2016 RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 PANTHER PTHR32472 7 421 9.8E-178 T 23-04-2016 RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 PRINTS PR01874 DNA repair protein radA signature 78 106 1.0E-86 T 23-04-2016 RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 PRINTS PR01874 DNA repair protein radA signature 170 194 1.0E-86 T 23-04-2016 RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 PRINTS PR01874 DNA repair protein radA signature 9 33 1.0E-86 T 23-04-2016 RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 PRINTS PR01874 DNA repair protein radA signature 318 341 1.0E-86 T 23-04-2016 RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 PRINTS PR01874 DNA repair protein radA signature 120 137 1.0E-86 T 23-04-2016 RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 PRINTS PR01874 DNA repair protein radA signature 209 237 1.0E-86 T 23-04-2016 RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 PRINTS PR01874 DNA repair protein radA signature 244 270 1.0E-86 T 23-04-2016 RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 Pfam PF13481 AAA domain 73 218 1.7E-16 T 23-04-2016 RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 SUPERFAMILY SSF52540 65 289 3.01E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 SMART SM00382 86 240 2.3E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 Gene3D G3DSA:3.40.50.300 62 272 6.3E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 Gene3D G3DSA:3.30.230.10 280 425 3.4E-27 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 TIGRFAM TIGR00416 sms: DNA repair protein RadA 6 431 1.1E-163 T 23-04-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 SUPERFAMILY SSF54211 299 426 1.71E-31 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS14895 74ba9f7758e3ce606e0b09f45656d965 453 SUPERFAMILY SSF54211 251 265 1.71E-31 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS16695 9fe1d6891d7edceabea8e782f57394c7 412 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 288 410 1.5E-8 T 23-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RD1_RS16695 9fe1d6891d7edceabea8e782f57394c7 412 SUPERFAMILY SSF53067 4 223 2.37E-29 T 23-04-2016 RD1_RS16695 9fe1d6891d7edceabea8e782f57394c7 412 Gene3D G3DSA:3.30.420.40 2 223 3.4E-26 T 23-04-2016 RD1_RS16695 9fe1d6891d7edceabea8e782f57394c7 412 PANTHER PTHR10196 1 412 4.7E-80 T 23-04-2016 RD1_RS16695 9fe1d6891d7edceabea8e782f57394c7 412 PANTHER PTHR10196:SF9 1 412 4.7E-80 T 23-04-2016 RD1_RS16695 9fe1d6891d7edceabea8e782f57394c7 412 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 223 5.7E-13 T 23-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RD1_RS16695 9fe1d6891d7edceabea8e782f57394c7 412 Gene3D G3DSA:3.30.420.40 229 411 2.2E-6 T 23-04-2016 RD1_RS16695 9fe1d6891d7edceabea8e782f57394c7 412 SUPERFAMILY SSF53067 232 411 3.37E-12 T 23-04-2016 RD1_RS11910 d9dcf72c2e0d110399f769a3669c54f0 187 TIGRFAM TIGR00496 frr: ribosome recycling factor 14 187 9.8E-58 T 23-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RD1_RS11910 d9dcf72c2e0d110399f769a3669c54f0 187 Gene3D G3DSA:1.10.132.20 69 187 1.5E-40 T 23-04-2016 IPR023584 Ribosome recycling factor domain RD1_RS11910 d9dcf72c2e0d110399f769a3669c54f0 187 Hamap MF_00040 Ribosome-recycling factor [frr]. 6 187 24.313 T 23-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RD1_RS11910 d9dcf72c2e0d110399f769a3669c54f0 187 Pfam PF01765 Ribosome recycling factor 23 185 1.7E-58 T 23-04-2016 IPR023584 Ribosome recycling factor domain RD1_RS11910 d9dcf72c2e0d110399f769a3669c54f0 187 SUPERFAMILY SSF55194 8 186 1.09E-64 T 23-04-2016 IPR023584 Ribosome recycling factor domain RD1_RS11910 d9dcf72c2e0d110399f769a3669c54f0 187 PANTHER PTHR20982 2 187 9.9E-73 T 23-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 Gene3D G3DSA:2.40.30.110 889 982 1.9E-14 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 TIGRFAM TIGR01372 soxA: sarcosine oxidase, alpha subunit family 8 982 0.0 T 23-04-2016 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 Gene3D G3DSA:3.30.70.1400 651 737 5.1E-22 T 23-04-2016 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 870 969 2.7E-10 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 171 190 2.6E-8 T 23-04-2016 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 397 413 2.6E-8 T 23-04-2016 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 280 298 2.6E-8 T 23-04-2016 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 PANTHER PTHR13847 117 277 2.6E-35 T 23-04-2016 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 PANTHER PTHR13847 640 905 2.6E-35 T 23-04-2016 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 Gene3D G3DSA:3.50.50.60 289 363 6.1E-4 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 Pfam PF01571 Aminomethyltransferase folate-binding domain 597 863 7.5E-67 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 Gene3D G3DSA:3.50.50.60 168 288 2.2E-22 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 Gene3D G3DSA:3.50.50.60 405 474 2.2E-22 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 192 2.8E-9 T 23-04-2016 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 545 560 2.8E-9 T 23-04-2016 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 283 292 2.8E-9 T 23-04-2016 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 PIRSF PIRSF037980 1 983 0.0 T 23-04-2016 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 SUPERFAMILY SSF101790 889 983 9.16E-15 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 Pfam PF12831 FAD dependent oxidoreductase 170 217 5.4E-9 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 SUPERFAMILY SSF103025 589 874 2.51E-82 T 23-04-2016 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 Gene3D G3DSA:3.30.1360.120 743 842 9.6E-33 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 Gene3D G3DSA:3.30.1360.120 592 650 9.6E-33 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 19 100 4.6E-25 T 23-04-2016 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 PANTHER PTHR13847:SF189 117 277 2.6E-35 T 23-04-2016 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 PANTHER PTHR13847:SF189 640 905 2.6E-35 T 23-04-2016 RD1_RS00045 d8b9cb4b8f6b474da8cd8f6615b566d1 983 SUPERFAMILY SSF51905 119 358 5.18E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS14400 1daf02798813bbaee55a64e7728c6bce 389 SUPERFAMILY SSF53187 2 198 3.77E-82 T 23-04-2016 RD1_RS14400 1daf02798813bbaee55a64e7728c6bce 389 SUPERFAMILY SSF53187 299 382 3.77E-82 T 23-04-2016 RD1_RS14400 1daf02798813bbaee55a64e7728c6bce 389 Pfam PF07687 Peptidase dimerisation domain 186 281 5.1E-11 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS14400 1daf02798813bbaee55a64e7728c6bce 389 SUPERFAMILY SSF55031 182 300 4.84E-32 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS14400 1daf02798813bbaee55a64e7728c6bce 389 PANTHER PTHR11014 5 388 2.9E-152 T 23-04-2016 RD1_RS14400 1daf02798813bbaee55a64e7728c6bce 389 PANTHER PTHR11014:SF63 5 388 2.9E-152 T 23-04-2016 RD1_RS14400 1daf02798813bbaee55a64e7728c6bce 389 PIRSF PIRSF005962 3 386 5.7E-130 T 23-04-2016 IPR017439 Amidohydrolase GO:0016787 RD1_RS14400 1daf02798813bbaee55a64e7728c6bce 389 Gene3D G3DSA:3.40.630.10 5 179 3.2E-93 T 23-04-2016 RD1_RS14400 1daf02798813bbaee55a64e7728c6bce 389 Gene3D G3DSA:3.40.630.10 299 381 3.2E-93 T 23-04-2016 RD1_RS14400 1daf02798813bbaee55a64e7728c6bce 389 Gene3D G3DSA:3.30.70.360 182 298 3.9E-44 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS14400 1daf02798813bbaee55a64e7728c6bce 389 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 14 371 1.6E-108 T 23-04-2016 IPR017439 Amidohydrolase GO:0016787 RD1_RS14400 1daf02798813bbaee55a64e7728c6bce 389 Pfam PF01546 Peptidase family M20/M25/M40 74 381 1.3E-31 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 SUPERFAMILY SSF52540 17 280 4.16E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 Hamap MF_00268 Protein RecA [recA]. 17 342 51.361 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 Gene3D G3DSA:3.40.50.300 47 280 6.7E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 PANTHER PTHR22942 17 348 1.6E-200 T 23-04-2016 RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 PANTHER PTHR22942:SF1 17 348 1.6E-200 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 16 336 3.1E-170 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 SMART SM00382 70 241 1.2E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 ProSitePatterns PS00321 recA signature. 226 234 - T 23-04-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 SUPERFAMILY SSF54752 281 339 6.02E-21 T 23-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 Gene3D G3DSA:3.30.250.10 281 339 5.9E-27 T 23-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 PRINTS PR00142 RecA protein signature 223 251 5.1E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 PRINTS PR00142 RecA protein signature 140 169 5.1E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 PRINTS PR00142 RecA protein signature 256 285 5.1E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 PRINTS PR00142 RecA protein signature 310 327 5.1E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 PRINTS PR00142 RecA protein signature 178 207 5.1E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 PRINTS PR00142 RecA protein signature 106 135 5.1E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RD1_RS12455 174949d70ba18fc48ff2401f4bbd6e89 359 Pfam PF00154 recA bacterial DNA recombination protein 19 281 3.3E-145 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RD1_RS01145 588f54856ab77448240d6bf8ba50d631 153 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 52 2.2E-8 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS01145 588f54856ab77448240d6bf8ba50d631 153 Pfam PF01799 [2Fe-2S] binding domain 73 144 1.2E-22 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RD1_RS01145 588f54856ab77448240d6bf8ba50d631 153 SUPERFAMILY SSF54292 2 78 2.36E-26 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS01145 588f54856ab77448240d6bf8ba50d631 153 Gene3D G3DSA:3.10.20.30 2 74 1.5E-29 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS01145 588f54856ab77448240d6bf8ba50d631 153 SUPERFAMILY SSF47741 73 150 1.07E-26 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RD1_RS01145 588f54856ab77448240d6bf8ba50d631 153 PANTHER PTHR11908 4 134 1.8E-29 T 23-04-2016 RD1_RS01145 588f54856ab77448240d6bf8ba50d631 153 Gene3D G3DSA:1.10.150.120 75 150 2.2E-25 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RD1_RS01145 588f54856ab77448240d6bf8ba50d631 153 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RD1_RS04035 c6acab1e2f334679d77576989b0c6a14 239 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 195 207 2.6E-9 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS04035 c6acab1e2f334679d77576989b0c6a14 239 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 179 2.6E-9 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS04035 c6acab1e2f334679d77576989b0c6a14 239 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 195 2.6E-9 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS04035 c6acab1e2f334679d77576989b0c6a14 239 Pfam PF00072 Response regulator receiver domain 16 126 4.3E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS04035 c6acab1e2f334679d77576989b0c6a14 239 SUPERFAMILY SSF46894 155 219 4.08E-18 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RD1_RS04035 c6acab1e2f334679d77576989b0c6a14 239 PANTHER PTHR26402 14 220 1.6E-56 T 23-04-2016 RD1_RS04035 c6acab1e2f334679d77576989b0c6a14 239 Gene3D G3DSA:1.10.10.10 157 219 1.4E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04035 c6acab1e2f334679d77576989b0c6a14 239 PANTHER PTHR26402:SF474 14 220 1.6E-56 T 23-04-2016 RD1_RS04035 c6acab1e2f334679d77576989b0c6a14 239 ProSitePatterns PS00622 LuxR-type HTH domain signature. 179 206 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS04035 c6acab1e2f334679d77576989b0c6a14 239 SUPERFAMILY SSF52172 15 142 6.26E-20 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS04035 c6acab1e2f334679d77576989b0c6a14 239 Pfam PF00196 Bacterial regulatory proteins, luxR family 164 218 4.2E-18 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS04035 c6acab1e2f334679d77576989b0c6a14 239 SMART SM00421 162 219 5.9E-23 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS04035 c6acab1e2f334679d77576989b0c6a14 239 Gene3D G3DSA:3.40.50.2300 15 140 7.5E-22 T 23-04-2016 RD1_RS04035 c6acab1e2f334679d77576989b0c6a14 239 SMART SM00448 14 128 7.8E-12 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS06175 770fa01f5e79da2fabe0b8c35f898d17 165 PIRSF PIRSF004749 1 165 1.2E-43 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RD1_RS06175 770fa01f5e79da2fabe0b8c35f898d17 165 PANTHER PTHR10458 1 163 4.8E-41 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RD1_RS06175 770fa01f5e79da2fabe0b8c35f898d17 165 Hamap MF_00163 Peptide deformylase [def]. 2 163 23.547 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RD1_RS06175 770fa01f5e79da2fabe0b8c35f898d17 165 PRINTS PR01576 Peptide deformylase signature 33 62 1.4E-25 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RD1_RS06175 770fa01f5e79da2fabe0b8c35f898d17 165 PRINTS PR01576 Peptide deformylase signature 102 120 1.4E-25 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RD1_RS06175 770fa01f5e79da2fabe0b8c35f898d17 165 PRINTS PR01576 Peptide deformylase signature 121 150 1.4E-25 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RD1_RS06175 770fa01f5e79da2fabe0b8c35f898d17 165 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 7 159 4.2E-36 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RD1_RS06175 770fa01f5e79da2fabe0b8c35f898d17 165 Pfam PF01327 Polypeptide deformylase 7 153 1.2E-36 T 23-04-2016 IPR023635 Peptide deformylase RD1_RS06175 770fa01f5e79da2fabe0b8c35f898d17 165 Gene3D G3DSA:3.90.45.10 7 163 3.6E-46 T 23-04-2016 IPR023635 Peptide deformylase RD1_RS06175 770fa01f5e79da2fabe0b8c35f898d17 165 SUPERFAMILY SSF56420 5 163 8.64E-49 T 23-04-2016 IPR023635 Peptide deformylase RD1_RS12700 f30d0d9601b1252f4003cb1275d5ec56 159 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 3 158 32.871 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS12700 f30d0d9601b1252f4003cb1275d5ec56 159 Gene3D G3DSA:3.30.1330.50 1 158 3.5E-68 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS12700 f30d0d9601b1252f4003cb1275d5ec56 159 SUPERFAMILY SSF69765 1 158 3.4E-64 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS12700 f30d0d9601b1252f4003cb1275d5ec56 159 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4 157 3.6E-63 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS12700 f30d0d9601b1252f4003cb1275d5ec56 159 PANTHER PTHR32125 1 159 1.5E-50 T 23-04-2016 RD1_RS12700 f30d0d9601b1252f4003cb1275d5ec56 159 Pfam PF02542 YgbB family 3 156 2.4E-60 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS12700 f30d0d9601b1252f4003cb1275d5ec56 159 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 37 52 - T 23-04-2016 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 154 304 1.6E-50 T 23-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 Gene3D G3DSA:3.40.50.1370 145 293 8.7E-59 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 PANTHER PTHR11405:SF1 1 306 4.6E-131 T 23-04-2016 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 Gene3D G3DSA:3.40.50.1370 1 144 2.6E-55 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 134 145 2.5E-26 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 2.5E-26 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 271 294 2.5E-26 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 259 268 2.5E-26 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 SUPERFAMILY SSF53671 1 306 1.83E-102 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 3 306 2.8E-110 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 1 307 76.21 T 23-04-2016 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 3 147 2.1E-47 T 23-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 222 232 1.2E-29 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 123 137 1.2E-29 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 285 296 1.2E-29 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 50 64 1.2E-29 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 83 96 1.2E-29 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 52 59 - T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RD1_RS07750 573d43825fffb69c39c341971e89acd4 308 PANTHER PTHR11405 1 306 4.6E-131 T 23-04-2016 RD1_RS02705 ea9a7f7e54f0d840c055c1c253ad2272 221 Pfam PF00857 Isochorismatase family 23 217 1.2E-28 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RD1_RS02705 ea9a7f7e54f0d840c055c1c253ad2272 221 Gene3D G3DSA:3.40.50.850 19 216 1.3E-63 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RD1_RS02705 ea9a7f7e54f0d840c055c1c253ad2272 221 PANTHER PTHR11080:SF2 19 216 5.5E-59 T 23-04-2016 RD1_RS02705 ea9a7f7e54f0d840c055c1c253ad2272 221 SUPERFAMILY SSF52499 21 218 1.26E-47 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RD1_RS02705 ea9a7f7e54f0d840c055c1c253ad2272 221 PANTHER PTHR11080 19 216 5.5E-59 T 23-04-2016 RD1_RS08125 1cc9aa1d7c917741d511222c677d1952 301 Gene3D G3DSA:3.40.190.10 183 263 1.7E-14 T 23-04-2016 RD1_RS08125 1cc9aa1d7c917741d511222c677d1952 301 Pfam PF03466 LysR substrate binding domain 89 295 4.6E-34 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS08125 1cc9aa1d7c917741d511222c677d1952 301 SUPERFAMILY SSF46785 2 113 2.21E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS08125 1cc9aa1d7c917741d511222c677d1952 301 Gene3D G3DSA:1.10.10.10 3 87 8.5E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS08125 1cc9aa1d7c917741d511222c677d1952 301 SUPERFAMILY SSF53850 91 299 2.02E-35 T 23-04-2016 RD1_RS08125 1cc9aa1d7c917741d511222c677d1952 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 7.7E-10 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS08125 1cc9aa1d7c917741d511222c677d1952 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 7.7E-10 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS08125 1cc9aa1d7c917741d511222c677d1952 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 7.7E-10 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS08125 1cc9aa1d7c917741d511222c677d1952 301 PANTHER PTHR30126:SF25 3 296 1.7E-115 T 23-04-2016 RD1_RS08125 1cc9aa1d7c917741d511222c677d1952 301 Gene3D G3DSA:3.40.190.10 91 182 5.9E-15 T 23-04-2016 RD1_RS08125 1cc9aa1d7c917741d511222c677d1952 301 PANTHER PTHR30126 3 296 1.7E-115 T 23-04-2016 RD1_RS08125 1cc9aa1d7c917741d511222c677d1952 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.7E-19 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS08170 ae373a03d7c3891c9be1a2f95fd51784 199 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 164 171 - T 23-04-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RD1_RS08170 ae373a03d7c3891c9be1a2f95fd51784 199 Gene3D G3DSA:1.10.287.990 21 89 4.0E-22 T 23-04-2016 RD1_RS08170 ae373a03d7c3891c9be1a2f95fd51784 199 SUPERFAMILY SSF46609 1 91 3.93E-30 T 23-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RD1_RS08170 ae373a03d7c3891c9be1a2f95fd51784 199 PANTHER PTHR11404:SF8 1 199 3.7E-93 T 23-04-2016 RD1_RS08170 ae373a03d7c3891c9be1a2f95fd51784 199 PIRSF PIRSF000349 1 199 9.6E-72 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RD1_RS08170 ae373a03d7c3891c9be1a2f95fd51784 199 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 98 198 3.5E-35 T 23-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RD1_RS08170 ae373a03d7c3891c9be1a2f95fd51784 199 PRINTS PR01703 Manganese superoxide dismutase signature 162 174 5.4E-18 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RD1_RS08170 ae373a03d7c3891c9be1a2f95fd51784 199 PRINTS PR01703 Manganese superoxide dismutase signature 125 133 5.4E-18 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RD1_RS08170 ae373a03d7c3891c9be1a2f95fd51784 199 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 5.4E-18 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RD1_RS08170 ae373a03d7c3891c9be1a2f95fd51784 199 PRINTS PR01703 Manganese superoxide dismutase signature 28 41 5.4E-18 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RD1_RS08170 ae373a03d7c3891c9be1a2f95fd51784 199 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 5.4E-18 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RD1_RS08170 ae373a03d7c3891c9be1a2f95fd51784 199 PANTHER PTHR11404 1 199 3.7E-93 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RD1_RS08170 ae373a03d7c3891c9be1a2f95fd51784 199 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 89 9.2E-25 T 23-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RD1_RS08170 ae373a03d7c3891c9be1a2f95fd51784 199 SUPERFAMILY SSF54719 92 198 1.14E-40 T 23-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RD1_RS01135 1a75d2182a20400b96cc05fae5e79654 340 SUPERFAMILY SSF50891 178 290 2.16E-7 T 23-04-2016 IPR029000 Cyclophilin-like domain RD1_RS01135 1a75d2182a20400b96cc05fae5e79654 340 Gene3D G3DSA:2.40.100.10 178 295 2.1E-5 T 23-04-2016 IPR029000 Cyclophilin-like domain RD1_RS01135 1a75d2182a20400b96cc05fae5e79654 340 Pfam PF02626 Allophanate hydrolase subunit 2 27 283 6.4E-61 T 23-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B RD1_RS01135 1a75d2182a20400b96cc05fae5e79654 340 SMART SM00797 26 301 6.7E-81 T 23-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B RD1_RS12305 c470ccc036f3505fd460ef5c5797096e 356 SUPERFAMILY SSF81345 19 349 3.53E-71 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RD1_RS12305 c470ccc036f3505fd460ef5c5797096e 356 Pfam PF01032 FecCD transport family 38 349 5.5E-79 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RD1_RS12305 c470ccc036f3505fd460ef5c5797096e 356 PANTHER PTHR30472 13 356 5.6E-138 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RD1_RS12305 c470ccc036f3505fd460ef5c5797096e 356 Gene3D G3DSA:1.10.3470.10 23 354 2.0E-91 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RD1_RS12305 c470ccc036f3505fd460ef5c5797096e 356 PANTHER PTHR30472:SF25 13 356 5.6E-138 T 23-04-2016 RD1_RS10125 c15f99e7e65580e2e68ec9c5c09c9fb0 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 123 1.4E-10 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RD1_RS10125 c15f99e7e65580e2e68ec9c5c09c9fb0 131 Gene3D G3DSA:3.10.180.10 6 127 1.8E-28 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS10125 c15f99e7e65580e2e68ec9c5c09c9fb0 131 PANTHER PTHR10374 6 126 9.1E-31 T 23-04-2016 RD1_RS10125 c15f99e7e65580e2e68ec9c5c09c9fb0 131 SUPERFAMILY SSF54593 5 127 4.97E-27 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS10125 c15f99e7e65580e2e68ec9c5c09c9fb0 131 PANTHER PTHR10374:SF8 6 126 9.1E-31 T 23-04-2016 RD1_RS04925 e88933459f997a7864f12e93cc8a393b 153 Gene3D G3DSA:3.40.50.270 6 143 9.3E-28 T 23-04-2016 RD1_RS04925 e88933459f997a7864f12e93cc8a393b 153 SUPERFAMILY SSF52788 7 145 2.88E-32 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RD1_RS04925 e88933459f997a7864f12e93cc8a393b 153 SMART SM00226 7 148 1.6E-19 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RD1_RS04925 e88933459f997a7864f12e93cc8a393b 153 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 9 142 3.0E-13 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RD1_RS04925 e88933459f997a7864f12e93cc8a393b 153 PANTHER PTHR11717:SF18 6 146 4.5E-22 T 23-04-2016 RD1_RS04925 e88933459f997a7864f12e93cc8a393b 153 PANTHER PTHR11717 6 146 4.5E-22 T 23-04-2016 RD1_RS11760 14e007459631f95aff135ca1cbaaa404 160 Pfam PF00005 ABC transporter 22 158 4.9E-23 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS11760 14e007459631f95aff135ca1cbaaa404 160 Gene3D G3DSA:3.40.50.300 7 160 6.8E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11760 14e007459631f95aff135ca1cbaaa404 160 SUPERFAMILY SSF52540 7 160 6.2E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11760 14e007459631f95aff135ca1cbaaa404 160 PANTHER PTHR24220 6 160 2.7E-77 T 23-04-2016 RD1_RS11760 14e007459631f95aff135ca1cbaaa404 160 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS11760 14e007459631f95aff135ca1cbaaa404 160 PANTHER PTHR24220:SF446 6 160 2.7E-77 T 23-04-2016 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR00418 DNA topoisomerase II family signature 736 752 3.3E-70 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR00418 DNA topoisomerase II family signature 41 56 3.3E-70 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR00418 DNA topoisomerase II family signature 512 529 3.3E-70 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR00418 DNA topoisomerase II family signature 427 441 3.3E-70 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR00418 DNA topoisomerase II family signature 275 288 3.3E-70 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR00418 DNA topoisomerase II family signature 532 544 3.3E-70 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR00418 DNA topoisomerase II family signature 119 133 3.3E-70 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR00418 DNA topoisomerase II family signature 76 89 3.3E-70 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR00418 DNA topoisomerase II family signature 494 510 3.3E-70 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR01159 DNA gyrase subunit B signature 477 486 1.5E-72 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR01159 DNA gyrase subunit B signature 381 401 1.5E-72 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR01159 DNA gyrase subunit B signature 186 201 1.5E-72 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR01159 DNA gyrase subunit B signature 367 381 1.5E-72 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR01159 DNA gyrase subunit B signature 11 21 1.5E-72 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR01159 DNA gyrase subunit B signature 201 214 1.5E-72 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR01159 DNA gyrase subunit B signature 319 335 1.5E-72 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR01159 DNA gyrase subunit B signature 757 769 1.5E-72 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR01159 DNA gyrase subunit B signature 773 789 1.5E-72 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PRINTS PR01159 DNA gyrase subunit B signature 227 249 1.5E-72 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 SMART SM00387 37 181 1.6E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 11 803 1.4E-297 T 23-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 SUPERFAMILY SSF54211 228 398 4.55E-60 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 38 177 1.3E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 SUPERFAMILY SSF55874 11 216 2.88E-69 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PANTHER PTHR10169 1 560 5.2E-289 T 23-04-2016 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 PANTHER PTHR10169 721 803 5.2E-289 T 23-04-2016 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 Pfam PF01751 Toprim domain 426 538 3.7E-15 T 23-04-2016 IPR006171 Toprim domain RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 8 804 99.188 T 23-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 Gene3D G3DSA:3.30.565.10 11 218 2.4E-87 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 SUPERFAMILY SSF56719 401 567 4.97E-85 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 SUPERFAMILY SSF56719 730 795 4.97E-85 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 ProSitePatterns PS00177 DNA topoisomerase II signature. 429 437 - T 23-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 Pfam PF00204 DNA gyrase B 228 397 3.8E-59 T 23-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 Gene3D G3DSA:3.40.50.670 721 786 1.4E-92 T 23-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 Gene3D G3DSA:3.40.50.670 412 557 1.4E-92 T 23-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 SMART SM00433 41 797 5.0E-254 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 Gene3D G3DSA:3.30.230.10 227 399 3.2E-73 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD1_RS00980 1a77b5206caabfa7f1eacc6fd37a729d 804 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 732 793 9.8E-29 T 23-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS17540 f2659a536b5c307c00efd06b55b60370 125 Pfam PF07845 Protein of unknown function (DUF1636) 7 119 3.2E-33 T 23-04-2016 IPR012863 Protein of unknown function DUF1636 RD1_RS17540 f2659a536b5c307c00efd06b55b60370 125 SUPERFAMILY SSF52833 5 107 3.47E-6 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS05605 d89404fcaa67ed2b8b55f1c795253ca0 552 TIGRFAM TIGR00552 nadE: NAD+ synthetase 270 527 1.7E-54 T 23-04-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 RD1_RS05605 d89404fcaa67ed2b8b55f1c795253ca0 552 Pfam PF02540 NAD synthase 269 523 1.7E-67 T 23-04-2016 IPR022310 NAD/GMP synthase RD1_RS05605 d89404fcaa67ed2b8b55f1c795253ca0 552 PIRSF PIRSF006630 2 551 3.3E-171 T 23-04-2016 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|UniPathway: UPA00253 RD1_RS05605 d89404fcaa67ed2b8b55f1c795253ca0 552 PANTHER PTHR23090 2 548 6.9E-114 T 23-04-2016 RD1_RS05605 d89404fcaa67ed2b8b55f1c795253ca0 552 SUPERFAMILY SSF56317 4 244 1.06E-54 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS05605 d89404fcaa67ed2b8b55f1c795253ca0 552 Pfam PF00795 Carbon-nitrogen hydrolase 6 244 3.3E-24 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS05605 d89404fcaa67ed2b8b55f1c795253ca0 552 Gene3D G3DSA:3.60.110.10 4 244 4.3E-51 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS05605 d89404fcaa67ed2b8b55f1c795253ca0 552 Gene3D G3DSA:3.40.50.620 254 529 1.4E-70 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS05605 d89404fcaa67ed2b8b55f1c795253ca0 552 SUPERFAMILY SSF52402 253 531 1.79E-72 T 23-04-2016 RD1_RS01940 dfc87bf0c270ba1781a78ada66d65f9a 410 Gene3D G3DSA:3.40.50.1100 53 149 2.1E-24 T 23-04-2016 RD1_RS01940 dfc87bf0c270ba1781a78ada66d65f9a 410 PANTHER PTHR10314:SF30 11 358 1.3E-116 T 23-04-2016 RD1_RS01940 dfc87bf0c270ba1781a78ada66d65f9a 410 Gene3D G3DSA:3.40.1020.10 212 409 4.5E-45 T 23-04-2016 RD1_RS01940 dfc87bf0c270ba1781a78ada66d65f9a 410 PANTHER PTHR10314 11 358 1.3E-116 T 23-04-2016 RD1_RS01940 dfc87bf0c270ba1781a78ada66d65f9a 410 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 318 409 3.9E-21 T 23-04-2016 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 RD1_RS01940 dfc87bf0c270ba1781a78ada66d65f9a 410 SUPERFAMILY SSF53686 12 351 1.44E-84 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS01940 dfc87bf0c270ba1781a78ada66d65f9a 410 TIGRFAM TIGR02079 THD1: threonine dehydratase 10 410 1.1E-156 T 23-04-2016 IPR011820 L-threonine dehydratase biosynthetic IlvA GO:0004794 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 RD1_RS01940 dfc87bf0c270ba1781a78ada66d65f9a 410 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 44 57 - T 23-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RD1_RS01940 dfc87bf0c270ba1781a78ada66d65f9a 410 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 22 305 1.0E-67 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS01940 dfc87bf0c270ba1781a78ada66d65f9a 410 SUPERFAMILY SSF55021 329 409 2.11E-16 T 23-04-2016 RD1_RS00925 006039ead809de3fb2e6ad4cc33616b0 392 ProSitePatterns PS00737 Thiolases signature 2. 338 354 - T 23-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 RD1_RS00925 006039ead809de3fb2e6ad4cc33616b0 392 SUPERFAMILY SSF53901 270 391 2.85E-42 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS00925 006039ead809de3fb2e6ad4cc33616b0 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 390 7.9E-132 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RD1_RS00925 006039ead809de3fb2e6ad4cc33616b0 392 PIRSF PIRSF000429 1 392 3.7E-119 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RD1_RS00925 006039ead809de3fb2e6ad4cc33616b0 392 PANTHER PTHR18919:SF95 1 392 1.7E-176 T 23-04-2016 RD1_RS00925 006039ead809de3fb2e6ad4cc33616b0 392 ProSitePatterns PS00099 Thiolases active site. 373 386 - T 23-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 RD1_RS00925 006039ead809de3fb2e6ad4cc33616b0 392 Pfam PF02803 Thiolase, C-terminal domain 269 391 5.4E-43 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RD1_RS00925 006039ead809de3fb2e6ad4cc33616b0 392 SUPERFAMILY SSF53901 5 269 4.74E-77 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS00925 006039ead809de3fb2e6ad4cc33616b0 392 PANTHER PTHR18919 1 392 1.7E-176 T 23-04-2016 RD1_RS00925 006039ead809de3fb2e6ad4cc33616b0 392 Gene3D G3DSA:3.40.47.10 4 125 2.1E-61 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS00925 006039ead809de3fb2e6ad4cc33616b0 392 Gene3D G3DSA:3.40.47.10 195 275 2.1E-61 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS00925 006039ead809de3fb2e6ad4cc33616b0 392 Pfam PF00108 Thiolase, N-terminal domain 5 260 1.1E-80 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RD1_RS00925 006039ead809de3fb2e6ad4cc33616b0 392 Gene3D G3DSA:3.40.47.10 276 391 2.0E-60 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS00925 006039ead809de3fb2e6ad4cc33616b0 392 Gene3D G3DSA:3.40.47.10 145 194 2.0E-60 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS11875 4266c583806f68d295d90db595011915 194 PANTHER PTHR21666 59 194 2.3E-32 T 23-04-2016 RD1_RS11875 4266c583806f68d295d90db595011915 194 Gene3D G3DSA:1.10.530.10 77 191 1.8E-42 T 23-04-2016 RD1_RS11875 4266c583806f68d295d90db595011915 194 Pfam PF01464 Transglycosylase SLT domain 81 186 2.4E-27 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 RD1_RS11875 4266c583806f68d295d90db595011915 194 SUPERFAMILY SSF53955 60 189 7.39E-43 T 23-04-2016 IPR023346 Lysozyme-like domain RD1_RS05130 f3b81b2e923acf87f8cf960099076ef0 640 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 12 69 1.0E-15 T 23-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 RD1_RS05130 f3b81b2e923acf87f8cf960099076ef0 640 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 8 632 1.1E-302 T 23-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 RD1_RS05130 f3b81b2e923acf87f8cf960099076ef0 640 Gene3D G3DSA:3.40.50.980 67 253 5.5E-42 T 23-04-2016 RD1_RS05130 f3b81b2e923acf87f8cf960099076ef0 640 ProSitePatterns PS00455 Putative AMP-binding domain signature. 248 259 - T 23-04-2016 IPR020845 AMP-binding, conserved site RD1_RS05130 f3b81b2e923acf87f8cf960099076ef0 640 SUPERFAMILY SSF56801 4 631 1.18E-173 T 23-04-2016 RD1_RS05130 f3b81b2e923acf87f8cf960099076ef0 640 PANTHER PTHR24095 10 633 0.0 T 23-04-2016 RD1_RS05130 f3b81b2e923acf87f8cf960099076ef0 640 Gene3D G3DSA:2.30.38.10 427 504 2.7E-6 T 23-04-2016 RD1_RS05130 f3b81b2e923acf87f8cf960099076ef0 640 PANTHER PTHR24095:SF116 10 633 0.0 T 23-04-2016 RD1_RS05130 f3b81b2e923acf87f8cf960099076ef0 640 Gene3D G3DSA:3.40.50.980 254 416 7.3E-30 T 23-04-2016 RD1_RS05130 f3b81b2e923acf87f8cf960099076ef0 640 Pfam PF13193 AMP-binding enzyme C-terminal domain 520 598 9.2E-24 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RD1_RS05130 f3b81b2e923acf87f8cf960099076ef0 640 Pfam PF00501 AMP-binding enzyme 71 511 4.0E-91 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RD1_RS05130 f3b81b2e923acf87f8cf960099076ef0 640 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 1 634 49.818 T 23-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 RD1_RS05130 f3b81b2e923acf87f8cf960099076ef0 640 Gene3D G3DSA:3.30.300.30 507 620 4.3E-26 T 23-04-2016 RD1_RS12150 63bfa94c1396ea54ac162d59b8a6db49 395 SUPERFAMILY SSF53383 27 390 8.11E-96 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS12150 63bfa94c1396ea54ac162d59b8a6db49 395 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 12 388 1.4E-97 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RD1_RS12150 63bfa94c1396ea54ac162d59b8a6db49 395 PANTHER PTHR11808 15 394 3.5E-120 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RD1_RS12150 63bfa94c1396ea54ac162d59b8a6db49 395 PIRSF PIRSF001434 1 392 7.7E-111 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RD1_RS12150 63bfa94c1396ea54ac162d59b8a6db49 395 Gene3D G3DSA:3.40.640.10 10 253 2.4E-71 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS12150 63bfa94c1396ea54ac162d59b8a6db49 395 Gene3D G3DSA:3.90.1150.10 255 391 1.7E-31 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS08935 26f4d96340ddd4d22f1b5ff9a6ecef6d 512 PANTHER PTHR11564 206 507 5.1E-115 T 23-04-2016 RD1_RS08935 26f4d96340ddd4d22f1b5ff9a6ecef6d 512 SMART SM00382 306 452 1.9E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS08935 26f4d96340ddd4d22f1b5ff9a6ecef6d 512 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 237 508 57.78 T 23-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RD1_RS08935 26f4d96340ddd4d22f1b5ff9a6ecef6d 512 Gene3D G3DSA:1.20.120.140 239 318 3.0E-21 T 23-04-2016 RD1_RS08935 26f4d96340ddd4d22f1b5ff9a6ecef6d 512 Pfam PF00448 SRP54-type protein, GTPase domain 307 507 5.2E-73 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RD1_RS08935 26f4d96340ddd4d22f1b5ff9a6ecef6d 512 Gene3D G3DSA:3.40.50.300 319 508 9.9E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08935 26f4d96340ddd4d22f1b5ff9a6ecef6d 512 SMART SM00963 220 293 8.4E-7 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RD1_RS08935 26f4d96340ddd4d22f1b5ff9a6ecef6d 512 PANTHER PTHR11564:SF16 206 507 5.1E-115 T 23-04-2016 RD1_RS08935 26f4d96340ddd4d22f1b5ff9a6ecef6d 512 SMART SM00962 307 508 4.0E-112 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RD1_RS08935 26f4d96340ddd4d22f1b5ff9a6ecef6d 512 SUPERFAMILY SSF52540 302 508 2.18E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08935 26f4d96340ddd4d22f1b5ff9a6ecef6d 512 Pfam PF02881 SRP54-type protein, helical bundle domain 236 288 2.7E-7 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RD1_RS08935 26f4d96340ddd4d22f1b5ff9a6ecef6d 512 SUPERFAMILY SSF47364 231 297 5.76E-12 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RD1_RS08935 26f4d96340ddd4d22f1b5ff9a6ecef6d 512 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 238 506 2.4E-100 T 23-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RD1_RS01150 9525b0998b282d6293255ef01013a7aa 727 PANTHER PTHR11908:SF79 136 720 8.4E-151 T 23-04-2016 RD1_RS01150 9525b0998b282d6293255ef01013a7aa 727 Gene3D G3DSA:3.30.365.10 393 557 5.7E-29 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS01150 9525b0998b282d6293255ef01013a7aa 727 Gene3D G3DSA:3.30.365.10 319 348 5.5E-5 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS01150 9525b0998b282d6293255ef01013a7aa 727 SUPERFAMILY SSF56003 40 252 3.0E-38 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS01150 9525b0998b282d6293255ef01013a7aa 727 SUPERFAMILY SSF56003 320 724 5.1E-102 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS01150 9525b0998b282d6293255ef01013a7aa 727 SMART SM01008 219 297 9.8E-11 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS01150 9525b0998b282d6293255ef01013a7aa 727 PANTHER PTHR11908 136 720 8.4E-151 T 23-04-2016 RD1_RS01150 9525b0998b282d6293255ef01013a7aa 727 Gene3D G3DSA:3.30.365.10 558 724 1.2E-36 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS01150 9525b0998b282d6293255ef01013a7aa 727 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 33 201 1.4E-14 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS01150 9525b0998b282d6293255ef01013a7aa 727 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 596 679 1.6E-13 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS01150 9525b0998b282d6293255ef01013a7aa 727 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 317 556 4.2E-28 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS01150 9525b0998b282d6293255ef01013a7aa 727 PIRSF PIRSF036389 9 727 3.0E-221 T 23-04-2016 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related RD1_RS01150 9525b0998b282d6293255ef01013a7aa 727 Gene3D G3DSA:3.90.1170.50 200 269 1.1E-15 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS01150 9525b0998b282d6293255ef01013a7aa 727 Gene3D G3DSA:3.30.365.10 54 199 1.0E-34 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS04775 b8fd44ab645351cc81d80f9f2439b307 200 Pfam PF03358 NADPH-dependent FMN reductase 16 128 6.2E-12 T 23-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RD1_RS04775 b8fd44ab645351cc81d80f9f2439b307 200 PANTHER PTHR30546:SF0 6 128 4.9E-25 T 23-04-2016 RD1_RS04775 b8fd44ab645351cc81d80f9f2439b307 200 Gene3D G3DSA:3.40.50.360 7 187 1.4E-50 T 23-04-2016 IPR029039 Flavoprotein-like domain RD1_RS04775 b8fd44ab645351cc81d80f9f2439b307 200 SUPERFAMILY SSF52218 8 186 1.7E-41 T 23-04-2016 IPR029039 Flavoprotein-like domain RD1_RS04775 b8fd44ab645351cc81d80f9f2439b307 200 PANTHER PTHR30546 6 128 4.9E-25 T 23-04-2016 RD1_RS01735 ffeae6c73c0ff6a873a6935aea782a99 252 SMART SM00382 39 226 3.5E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS01735 ffeae6c73c0ff6a873a6935aea782a99 252 PANTHER PTHR24220:SF497 16 247 1.2E-132 T 23-04-2016 RD1_RS01735 ffeae6c73c0ff6a873a6935aea782a99 252 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS01735 ffeae6c73c0ff6a873a6935aea782a99 252 Gene3D G3DSA:3.40.50.300 11 244 6.0E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01735 ffeae6c73c0ff6a873a6935aea782a99 252 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 224 246 1.1E-5 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD1_RS01735 ffeae6c73c0ff6a873a6935aea782a99 252 PANTHER PTHR24220 16 247 1.2E-132 T 23-04-2016 RD1_RS01735 ffeae6c73c0ff6a873a6935aea782a99 252 SUPERFAMILY SSF52540 15 246 1.66E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01735 ffeae6c73c0ff6a873a6935aea782a99 252 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 15 250 7.3E-110 T 23-04-2016 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 RD1_RS01735 ffeae6c73c0ff6a873a6935aea782a99 252 Pfam PF00005 ABC transporter 31 176 1.7E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS10890 e864b0929d6d8baacf0d368c050032d2 287 SUPERFAMILY SSF161098 9 275 2.52E-49 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10890 e864b0929d6d8baacf0d368c050032d2 287 PANTHER PTHR30193 18 272 5.4E-53 T 23-04-2016 RD1_RS10890 e864b0929d6d8baacf0d368c050032d2 287 Gene3D G3DSA:1.10.3720.10 16 282 4.1E-46 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10890 e864b0929d6d8baacf0d368c050032d2 287 PANTHER PTHR30193:SF5 18 272 5.4E-53 T 23-04-2016 RD1_RS10890 e864b0929d6d8baacf0d368c050032d2 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 272 5.2E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13080 f899f4bf55bcb0164a3f11a2d966c1eb 450 SUPERFAMILY SSF53822 45 433 4.71E-80 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS13080 f899f4bf55bcb0164a3f11a2d966c1eb 450 Gene3D G3DSA:3.40.50.2300 44 262 4.3E-50 T 23-04-2016 RD1_RS13080 f899f4bf55bcb0164a3f11a2d966c1eb 450 PANTHER PTHR30483 42 443 2.5E-49 T 23-04-2016 RD1_RS13080 f899f4bf55bcb0164a3f11a2d966c1eb 450 Pfam PF13458 Periplasmic binding protein 45 406 1.9E-65 T 23-04-2016 IPR028081 Leucine-binding protein domain RD1_RS13080 f899f4bf55bcb0164a3f11a2d966c1eb 450 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 7 26 2.5E-4 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 SUPERFAMILY SSF54373 234 342 2.67E-27 T 23-04-2016 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 Pfam PF01571 Aminomethyltransferase folate-binding domain 441 721 1.6E-66 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 Gene3D G3DSA:2.40.30.110 740 817 5.4E-19 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 Gene3D G3DSA:3.30.9.10 87 140 4.0E-46 T 23-04-2016 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 Gene3D G3DSA:3.30.9.10 233 342 4.0E-46 T 23-04-2016 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 PANTHER PTHR13847:SF193 3 460 5.2E-124 T 23-04-2016 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 Gene3D G3DSA:3.30.1360.120 435 507 2.8E-34 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 Gene3D G3DSA:3.30.1360.120 599 700 2.8E-34 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 SUPERFAMILY SSF103025 433 738 5.65E-83 T 23-04-2016 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 Gene3D G3DSA:3.30.70.1400 508 584 8.2E-11 T 23-04-2016 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 Gene3D G3DSA:3.50.50.60 141 232 1.1E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 Gene3D G3DSA:3.50.50.60 343 399 1.1E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 Gene3D G3DSA:3.50.50.60 2 82 1.1E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 PANTHER PTHR13847 3 460 5.2E-124 T 23-04-2016 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 SUPERFAMILY SSF51905 5 233 5.96E-56 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 SUPERFAMILY SSF51905 343 405 5.96E-56 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 Pfam PF16350 FAD dependent oxidoreductase central domain 384 438 1.3E-14 T 23-04-2016 IPR032503 FAD dependent oxidoreductase, central domain RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 730 817 1.9E-13 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 SUPERFAMILY SSF101790 745 831 6.05E-21 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RD1_RS15775 b1b2c9ed3f591d2e0ded062fe74262d4 833 Pfam PF01266 FAD dependent oxidoreductase 7 381 7.1E-49 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS13495 921b518cf2f234bb9d195350362747b6 342 SUPERFAMILY SSF52540 42 273 7.67E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13495 921b518cf2f234bb9d195350362747b6 342 PANTHER PTHR24220:SF374 43 299 1.3E-128 T 23-04-2016 RD1_RS13495 921b518cf2f234bb9d195350362747b6 342 PANTHER PTHR24220:SF374 8 18 1.3E-128 T 23-04-2016 RD1_RS13495 921b518cf2f234bb9d195350362747b6 342 PANTHER PTHR24220:SF374 319 338 1.3E-128 T 23-04-2016 RD1_RS13495 921b518cf2f234bb9d195350362747b6 342 PANTHER PTHR24220 43 299 1.3E-128 T 23-04-2016 RD1_RS13495 921b518cf2f234bb9d195350362747b6 342 PANTHER PTHR24220 8 18 1.3E-128 T 23-04-2016 RD1_RS13495 921b518cf2f234bb9d195350362747b6 342 PANTHER PTHR24220 319 338 1.3E-128 T 23-04-2016 RD1_RS13495 921b518cf2f234bb9d195350362747b6 342 Pfam PF00005 ABC transporter 46 194 8.3E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS13495 921b518cf2f234bb9d195350362747b6 342 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 40 333 4.4E-101 T 23-04-2016 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 RD1_RS13495 921b518cf2f234bb9d195350362747b6 342 Gene3D G3DSA:3.40.50.300 41 267 1.1E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13495 921b518cf2f234bb9d195350362747b6 342 SMART SM00382 55 243 3.4E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS13495 921b518cf2f234bb9d195350362747b6 342 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS12035 32028f9448c8438b833988dcfdf45e82 153 PIRSF PIRSF002181 1 153 2.9E-50 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RD1_RS12035 32028f9448c8438b833988dcfdf45e82 153 SUPERFAMILY SSF52161 1 140 3.01E-54 T 23-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 RD1_RS12035 32028f9448c8438b833988dcfdf45e82 153 PANTHER PTHR11545 1 141 1.9E-64 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RD1_RS12035 32028f9448c8438b833988dcfdf45e82 153 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 5 141 2.8E-58 T 23-04-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 RD1_RS12035 32028f9448c8438b833988dcfdf45e82 153 Pfam PF00572 Ribosomal protein L13 14 138 1.8E-51 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RD1_RS12035 32028f9448c8438b833988dcfdf45e82 153 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 23-04-2016 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 RD1_RS12035 32028f9448c8438b833988dcfdf45e82 153 Gene3D G3DSA:3.90.1180.10 3 141 8.5E-59 T 23-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 RD1_RS12035 32028f9448c8438b833988dcfdf45e82 153 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.091 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RD1_RS15130 15187580a05680ba791452ff3c6f633f 260 PANTHER PTHR11941 2 258 4.1E-84 T 23-04-2016 RD1_RS15130 15187580a05680ba791452ff3c6f633f 260 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 259 1.3E-47 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RD1_RS15130 15187580a05680ba791452ff3c6f633f 260 SUPERFAMILY SSF52096 1 258 1.25E-68 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS15130 15187580a05680ba791452ff3c6f633f 260 PANTHER PTHR11941:SF86 2 258 4.1E-84 T 23-04-2016 RD1_RS15130 15187580a05680ba791452ff3c6f633f 260 Gene3D G3DSA:1.10.12.10 204 258 3.4E-9 T 23-04-2016 IPR014748 Crontonase, C-terminal RD1_RS15130 15187580a05680ba791452ff3c6f633f 260 Gene3D G3DSA:3.90.226.10 2 195 8.0E-56 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS17015 7a1573a4da0fdc512cf39af76be4c8ca 599 Pfam PF12680 SnoaL-like domain 16 114 1.2E-6 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RD1_RS17015 7a1573a4da0fdc512cf39af76be4c8ca 599 SUPERFAMILY SSF51905 168 368 3.16E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS17015 7a1573a4da0fdc512cf39af76be4c8ca 599 SUPERFAMILY SSF51735 482 515 3.94E-6 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17015 7a1573a4da0fdc512cf39af76be4c8ca 599 SUPERFAMILY SSF51735 408 444 3.94E-6 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17015 7a1573a4da0fdc512cf39af76be4c8ca 599 SUPERFAMILY SSF51735 326 364 3.94E-6 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17015 7a1573a4da0fdc512cf39af76be4c8ca 599 SUPERFAMILY SSF54427 8 115 1.26E-11 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS17015 7a1573a4da0fdc512cf39af76be4c8ca 599 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 332 357 6.2E-5 T 23-04-2016 RD1_RS17015 7a1573a4da0fdc512cf39af76be4c8ca 599 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 167 189 6.2E-5 T 23-04-2016 RD1_RS17015 7a1573a4da0fdc512cf39af76be4c8ca 599 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 291 300 6.2E-5 T 23-04-2016 RD1_RS17015 7a1573a4da0fdc512cf39af76be4c8ca 599 Gene3D G3DSA:3.50.50.60 169 368 4.1E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS17015 7a1573a4da0fdc512cf39af76be4c8ca 599 PANTHER PTHR23023:SF123 164 564 9.5E-123 T 23-04-2016 RD1_RS17015 7a1573a4da0fdc512cf39af76be4c8ca 599 Gene3D G3DSA:3.10.450.50 7 114 1.9E-10 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS17015 7a1573a4da0fdc512cf39af76be4c8ca 599 PANTHER PTHR23023 164 564 9.5E-123 T 23-04-2016 RD1_RS17015 7a1573a4da0fdc512cf39af76be4c8ca 599 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 169 365 3.9E-17 T 23-04-2016 RD1_RS15750 72e12ba8d2c90f674790cf583a84b4e2 202 PANTHER PTHR30309:SF0 6 202 1.6E-58 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RD1_RS15750 72e12ba8d2c90f674790cf583a84b4e2 202 PANTHER PTHR30309 6 202 1.6E-58 T 23-04-2016 RD1_RS15750 72e12ba8d2c90f674790cf583a84b4e2 202 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 13 199 19.273 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RD1_RS15750 72e12ba8d2c90f674790cf583a84b4e2 202 Pfam PF02660 Glycerol-3-phosphate acyltransferase 17 190 2.2E-46 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RD1_RS15750 72e12ba8d2c90f674790cf583a84b4e2 202 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 15 201 1.2E-49 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RD1_RS15750 72e12ba8d2c90f674790cf583a84b4e2 202 SMART SM01207 16 191 6.6E-77 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RD1_RS13110 45ba02adb27ab3c690d3aea6a827d802 501 Gene3D G3DSA:2.30.38.10 327 398 1.1E-24 T 23-04-2016 RD1_RS13110 45ba02adb27ab3c690d3aea6a827d802 501 Pfam PF13193 AMP-binding enzyme C-terminal domain 417 488 2.9E-13 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RD1_RS13110 45ba02adb27ab3c690d3aea6a827d802 501 PRINTS PR00154 AMP-binding signature 160 168 2.8E-5 T 23-04-2016 IPR020459 AMP-binding RD1_RS13110 45ba02adb27ab3c690d3aea6a827d802 501 PRINTS PR00154 AMP-binding signature 148 159 2.8E-5 T 23-04-2016 IPR020459 AMP-binding RD1_RS13110 45ba02adb27ab3c690d3aea6a827d802 501 PANTHER PTHR24096 1 495 2.1E-118 T 23-04-2016 RD1_RS13110 45ba02adb27ab3c690d3aea6a827d802 501 Gene3D G3DSA:3.40.50.980 159 309 2.1E-29 T 23-04-2016 RD1_RS13110 45ba02adb27ab3c690d3aea6a827d802 501 ProSitePatterns PS00455 Putative AMP-binding domain signature. 153 164 - T 23-04-2016 IPR020845 AMP-binding, conserved site RD1_RS13110 45ba02adb27ab3c690d3aea6a827d802 501 Pfam PF00501 AMP-binding enzyme 7 408 7.9E-90 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RD1_RS13110 45ba02adb27ab3c690d3aea6a827d802 501 Gene3D G3DSA:3.40.50.980 3 158 5.5E-40 T 23-04-2016 RD1_RS13110 45ba02adb27ab3c690d3aea6a827d802 501 SUPERFAMILY SSF56801 2 498 1.02E-129 T 23-04-2016 RD1_RS13110 45ba02adb27ab3c690d3aea6a827d802 501 Gene3D G3DSA:3.30.300.30 403 497 3.2E-25 T 23-04-2016 RD1_RS06560 976a4e62fa696d557154e61b1436517c 68 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 17.485 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06560 976a4e62fa696d557154e61b1436517c 68 PANTHER PTHR10916 1 68 1.5E-24 T 23-04-2016 RD1_RS06560 976a4e62fa696d557154e61b1436517c 68 Gene3D G3DSA:1.10.287.310 1 61 3.6E-28 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06560 976a4e62fa696d557154e61b1436517c 68 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 2.9E-20 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06560 976a4e62fa696d557154e61b1436517c 68 SUPERFAMILY SSF46561 1 61 1.44E-21 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06560 976a4e62fa696d557154e61b1436517c 68 Pfam PF00831 Ribosomal L29 protein 4 60 5.7E-24 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS19435 a75d732cc8f4cccd32e8bb02beb36c42 330 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 238 254 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RD1_RS19435 a75d732cc8f4cccd32e8bb02beb36c42 330 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 118 298 2.5E-56 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RD1_RS19435 a75d732cc8f4cccd32e8bb02beb36c42 330 SUPERFAMILY SSF52283 10 144 9.64E-34 T 23-04-2016 RD1_RS19435 a75d732cc8f4cccd32e8bb02beb36c42 330 Gene3D G3DSA:3.40.50.720 125 301 5.1E-62 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19435 a75d732cc8f4cccd32e8bb02beb36c42 330 Gene3D G3DSA:3.40.50.720 10 124 2.3E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19435 a75d732cc8f4cccd32e8bb02beb36c42 330 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 329 2.3E-26 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 RD1_RS19435 a75d732cc8f4cccd32e8bb02beb36c42 330 SUPERFAMILY SSF51735 110 299 2.88E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19435 a75d732cc8f4cccd32e8bb02beb36c42 330 PANTHER PTHR10996 9 329 2.0E-115 T 23-04-2016 RD1_RS15470 2c5bea2410488643d0100d3936b383cc 357 SUPERFAMILY SSF52540 113 353 3.87E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15470 2c5bea2410488643d0100d3936b383cc 357 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 111 350 2.1E-97 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RD1_RS15470 2c5bea2410488643d0100d3936b383cc 357 Pfam PF01883 Domain of unknown function DUF59 5 76 2.9E-15 T 23-04-2016 IPR002744 Domain of unknown function DUF59 RD1_RS15470 2c5bea2410488643d0100d3936b383cc 357 Hamap MF_02040 Iron-sulfur cluster carrier protein. 106 352 36.99 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RD1_RS15470 2c5bea2410488643d0100d3936b383cc 357 Gene3D G3DSA:3.40.50.300 107 349 2.3E-98 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15470 2c5bea2410488643d0100d3936b383cc 357 PANTHER PTHR23264 1 353 2.0E-135 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RD1_RS15470 2c5bea2410488643d0100d3936b383cc 357 ProSitePatterns PS01215 Mrp family signature. 217 233 - T 23-04-2016 IPR000808 Mrp, conserved site GO:0005524 RD1_RS15470 2c5bea2410488643d0100d3936b383cc 357 SUPERFAMILY SSF117916 1 89 1.08E-12 T 23-04-2016 RD1_RS08205 6c3135e6ada4e6c6d6ad63aebace0a10 412 SUPERFAMILY SSF111369 73 158 7.72E-12 T 23-04-2016 RD1_RS08205 6c3135e6ada4e6c6d6ad63aebace0a10 412 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 189 404 8.4E-30 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RD1_RS08205 6c3135e6ada4e6c6d6ad63aebace0a10 412 PANTHER PTHR30469:SF15 56 403 5.0E-44 T 23-04-2016 RD1_RS08205 6c3135e6ada4e6c6d6ad63aebace0a10 412 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 82 322 3.1E-18 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RD1_RS08205 6c3135e6ada4e6c6d6ad63aebace0a10 412 Gene3D G3DSA:2.40.50.100 84 117 4.4E-8 T 23-04-2016 RD1_RS08205 6c3135e6ada4e6c6d6ad63aebace0a10 412 Gene3D G3DSA:2.40.50.100 220 252 4.4E-8 T 23-04-2016 RD1_RS08205 6c3135e6ada4e6c6d6ad63aebace0a10 412 SUPERFAMILY SSF111369 141 329 1.09E-13 T 23-04-2016 RD1_RS08205 6c3135e6ada4e6c6d6ad63aebace0a10 412 PANTHER PTHR30469 56 403 5.0E-44 T 23-04-2016 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 SMART SM01086 765 854 1.8E-37 T 23-04-2016 IPR019489 Clp ATPase, C-terminal RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 Gene3D G3DSA:3.40.50.300 160 342 1.0E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 23-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 Gene3D G3DSA:3.40.50.300 549 775 4.9E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 Gene3D G3DSA:1.10.8.60 776 854 9.0E-32 T 23-04-2016 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 SUPERFAMILY SSF52540 545 849 7.94E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 PANTHER PTHR11638:SF18 1 872 0.0 T 23-04-2016 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 Gene3D G3DSA:1.10.1780.10 1 147 8.4E-39 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 PANTHER PTHR11638 1 872 0.0 T 23-04-2016 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 Pfam PF07724 AAA domain (Cdc48 subfamily) 595 758 3.7E-54 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 SUPERFAMILY SSF52540 159 544 4.41E-98 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 852 0.0 T 23-04-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 SUPERFAMILY SSF81923 5 156 2.55E-35 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 765 845 7.3E-27 T 23-04-2016 IPR019489 Clp ATPase, C-terminal RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 SMART SM00382 198 344 1.1E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 SMART SM00382 596 747 4.8E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 Gene3D G3DSA:1.10.8.60 343 428 7.7E-37 T 23-04-2016 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 144 9.0E-5 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 69 3.2E-8 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 630 648 - T 23-04-2016 IPR028299 ClpA/B, conserved site 2 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 707 721 1.0E-40 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 600 618 1.0E-40 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 674 692 1.0E-40 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 645 663 1.0E-40 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RD1_RS03305 74de4b06fd3f77766b3777088272b981 872 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 315 3.0E-11 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RD1_RS18185 7ac1ca79810d13f8ed8e16094c8cfb2b 732 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 510 605 8.9E-20 T 23-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RD1_RS18185 7ac1ca79810d13f8ed8e16094c8cfb2b 732 SUPERFAMILY SSF52096 2 317 1.66E-53 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS18185 7ac1ca79810d13f8ed8e16094c8cfb2b 732 Gene3D G3DSA:3.40.50.720 323 510 7.9E-55 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS18185 7ac1ca79810d13f8ed8e16094c8cfb2b 732 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 328 506 1.8E-58 T 23-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RD1_RS18185 7ac1ca79810d13f8ed8e16094c8cfb2b 732 Gene3D G3DSA:1.10.1040.10 643 721 6.8E-15 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS18185 7ac1ca79810d13f8ed8e16094c8cfb2b 732 PANTHER PTHR23309 4 725 2.0E-251 T 23-04-2016 RD1_RS18185 7ac1ca79810d13f8ed8e16094c8cfb2b 732 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 200 2.0E-17 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RD1_RS18185 7ac1ca79810d13f8ed8e16094c8cfb2b 732 SUPERFAMILY SSF48179 510 611 1.11E-21 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS18185 7ac1ca79810d13f8ed8e16094c8cfb2b 732 PANTHER PTHR23309:SF6 4 725 2.0E-251 T 23-04-2016 RD1_RS18185 7ac1ca79810d13f8ed8e16094c8cfb2b 732 SUPERFAMILY SSF48179 634 722 9.35E-21 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS18185 7ac1ca79810d13f8ed8e16094c8cfb2b 732 SUPERFAMILY SSF51735 325 507 1.01E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS18185 7ac1ca79810d13f8ed8e16094c8cfb2b 732 Gene3D G3DSA:1.10.1040.10 511 606 3.9E-21 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS18185 7ac1ca79810d13f8ed8e16094c8cfb2b 732 Gene3D G3DSA:3.90.226.10 246 306 2.5E-44 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS18185 7ac1ca79810d13f8ed8e16094c8cfb2b 732 Gene3D G3DSA:3.90.226.10 3 211 2.5E-44 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS07070 ab33bc1906245a195c9d9946215f14d6 278 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 111 276 2.4E-57 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 RD1_RS07070 ab33bc1906245a195c9d9946215f14d6 278 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 21 109 1.0E-23 T 23-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 RD1_RS07070 ab33bc1906245a195c9d9946215f14d6 278 SUPERFAMILY SSF54675 8 110 2.55E-28 T 23-04-2016 RD1_RS07070 ab33bc1906245a195c9d9946215f14d6 278 SUPERFAMILY SSF51690 111 276 1.02E-56 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 RD1_RS07070 ab33bc1906245a195c9d9946215f14d6 278 PANTHER PTHR32179 1 276 1.9E-112 T 23-04-2016 RD1_RS07070 ab33bc1906245a195c9d9946215f14d6 278 PIRSF PIRSF006250 4 277 8.4E-88 T 23-04-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD RD1_RS07070 ab33bc1906245a195c9d9946215f14d6 278 Gene3D G3DSA:3.90.1170.20 4 131 2.3E-43 T 23-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 RD1_RS07070 ab33bc1906245a195c9d9946215f14d6 278 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 12 276 1.7E-94 T 23-04-2016 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|UniPathway: UPA00253 RD1_RS07070 ab33bc1906245a195c9d9946215f14d6 278 Gene3D G3DSA:3.20.20.70 132 267 4.9E-59 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS06875 3725aa9f5a96276e019b69ac7d8bb254 435 Gene3D G3DSA:3.40.190.10 150 352 1.3E-48 T 23-04-2016 RD1_RS06875 3725aa9f5a96276e019b69ac7d8bb254 435 PANTHER PTHR30061:SF3 1 434 4.4E-124 T 23-04-2016 RD1_RS06875 3725aa9f5a96276e019b69ac7d8bb254 435 Gene3D G3DSA:3.40.190.10 37 149 1.9E-18 T 23-04-2016 RD1_RS06875 3725aa9f5a96276e019b69ac7d8bb254 435 PANTHER PTHR30061 1 434 4.4E-124 T 23-04-2016 RD1_RS06875 3725aa9f5a96276e019b69ac7d8bb254 435 Pfam PF01547 Bacterial extracellular solute-binding protein 42 327 2.3E-46 T 23-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 RD1_RS06875 3725aa9f5a96276e019b69ac7d8bb254 435 SUPERFAMILY SSF53850 27 407 4.53E-74 T 23-04-2016 RD1_RS09985 1c10a25463ea751b7c91682b00c77a49 852 SMART SM00283 564 811 7.6E-69 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RD1_RS09985 1c10a25463ea751b7c91682b00c77a49 852 SUPERFAMILY SSF158472 366 415 2.22E-9 T 23-04-2016 RD1_RS09985 1c10a25463ea751b7c91682b00c77a49 852 Pfam PF00672 HAMP domain 347 404 2.4E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS09985 1c10a25463ea751b7c91682b00c77a49 852 PANTHER PTHR32089 546 814 1.7E-89 T 23-04-2016 RD1_RS09985 1c10a25463ea751b7c91682b00c77a49 852 PANTHER PTHR32089 1 72 1.7E-89 T 23-04-2016 RD1_RS09985 1c10a25463ea751b7c91682b00c77a49 852 PANTHER PTHR32089 89 401 1.7E-89 T 23-04-2016 RD1_RS09985 1c10a25463ea751b7c91682b00c77a49 852 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 623 810 4.7E-44 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RD1_RS09985 1c10a25463ea751b7c91682b00c77a49 852 Pfam PF02743 Cache domain 39 328 9.9E-15 T 23-04-2016 IPR033479 Double Cache domain 1 RD1_RS09985 1c10a25463ea751b7c91682b00c77a49 852 SMART SM00304 366 419 4.5E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS09985 1c10a25463ea751b7c91682b00c77a49 852 SMART SM00304 511 563 2.1 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS09985 1c10a25463ea751b7c91682b00c77a49 852 SUPERFAMILY SSF58104 531 812 2.35E-57 T 23-04-2016 RD1_RS09985 1c10a25463ea751b7c91682b00c77a49 852 Gene3D G3DSA:1.10.287.950 580 781 3.8E-46 T 23-04-2016 RD1_RS09985 1c10a25463ea751b7c91682b00c77a49 852 Gene3D G3DSA:3.30.450.20 214 341 4.1E-6 T 23-04-2016 RD1_RS10680 df7aba77af69ac8e4d822602a2fed27e 425 PANTHER PTHR30600 382 417 8.8E-51 T 23-04-2016 RD1_RS10680 df7aba77af69ac8e4d822602a2fed27e 425 Pfam PF03150 Di-haem cytochrome c peroxidase 29 239 7.1E-34 T 23-04-2016 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 RD1_RS10680 df7aba77af69ac8e4d822602a2fed27e 425 PANTHER PTHR30600 182 344 8.8E-51 T 23-04-2016 RD1_RS10680 df7aba77af69ac8e4d822602a2fed27e 425 PANTHER PTHR30600 23 100 8.8E-51 T 23-04-2016 RD1_RS10680 df7aba77af69ac8e4d822602a2fed27e 425 Gene3D G3DSA:1.10.760.10 380 412 3.0E-43 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS10680 df7aba77af69ac8e4d822602a2fed27e 425 Gene3D G3DSA:1.10.760.10 230 344 3.0E-43 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS10680 df7aba77af69ac8e4d822602a2fed27e 425 PANTHER PTHR30600:SF7 127 166 8.8E-51 T 23-04-2016 RD1_RS10680 df7aba77af69ac8e4d822602a2fed27e 425 Gene3D G3DSA:1.10.760.10 26 229 1.2E-32 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS10680 df7aba77af69ac8e4d822602a2fed27e 425 PANTHER PTHR30600:SF7 23 100 8.8E-51 T 23-04-2016 RD1_RS10680 df7aba77af69ac8e4d822602a2fed27e 425 PANTHER PTHR30600 127 166 8.8E-51 T 23-04-2016 RD1_RS10680 df7aba77af69ac8e4d822602a2fed27e 425 PANTHER PTHR30600:SF7 382 417 8.8E-51 T 23-04-2016 RD1_RS10680 df7aba77af69ac8e4d822602a2fed27e 425 PANTHER PTHR30600:SF7 182 344 8.8E-51 T 23-04-2016 RD1_RS10680 df7aba77af69ac8e4d822602a2fed27e 425 SUPERFAMILY SSF46626 307 408 2.04E-33 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS10680 df7aba77af69ac8e4d822602a2fed27e 425 SUPERFAMILY SSF46626 215 280 2.04E-33 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS10680 df7aba77af69ac8e4d822602a2fed27e 425 SUPERFAMILY SSF46626 13 221 1.79E-31 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS14750 6007f58a86429d7f423b8b262f45ad9f 159 SUPERFAMILY SSF55040 12 156 1.83E-60 T 23-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 RD1_RS14750 6007f58a86429d7f423b8b262f45ad9f 159 Pfam PF01967 MoaC family 16 151 3.3E-55 T 23-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 RD1_RS14750 6007f58a86429d7f423b8b262f45ad9f 159 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 3 159 36.394 T 23-04-2016 IPR023046 Molybdenum cofactor biosynthesis C, bacterial-type UniPathway: UPA00344 RD1_RS14750 6007f58a86429d7f423b8b262f45ad9f 159 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 5 153 4.7E-61 T 23-04-2016 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 UniPathway: UPA00344 RD1_RS14750 6007f58a86429d7f423b8b262f45ad9f 159 Gene3D G3DSA:3.30.70.640 4 157 8.5E-68 T 23-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 RD1_RS14750 6007f58a86429d7f423b8b262f45ad9f 159 PANTHER PTHR22960 5 159 2.7E-89 T 23-04-2016 RD1_RS01715 9c2d52a1f5ccf736d4e7782c2258822a 204 SMART SM00474 1 169 6.6E-36 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RD1_RS01715 9c2d52a1f5ccf736d4e7782c2258822a 204 PANTHER PTHR12124:SF48 19 187 8.3E-82 T 23-04-2016 RD1_RS01715 9c2d52a1f5ccf736d4e7782c2258822a 204 Gene3D G3DSA:3.30.420.10 18 175 5.9E-24 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS01715 9c2d52a1f5ccf736d4e7782c2258822a 204 Pfam PF01612 3'-5' exonuclease 18 169 5.7E-37 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RD1_RS01715 9c2d52a1f5ccf736d4e7782c2258822a 204 PANTHER PTHR12124 19 187 8.3E-82 T 23-04-2016 RD1_RS01715 9c2d52a1f5ccf736d4e7782c2258822a 204 SUPERFAMILY SSF53098 14 191 9.99E-54 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS11165 b17f7a007e96f17f0a3cc2ab3b99c33f 273 PANTHER PTHR30193:SF30 24 270 5.3E-81 T 23-04-2016 RD1_RS11165 b17f7a007e96f17f0a3cc2ab3b99c33f 273 SUPERFAMILY SSF161098 10 263 3.74E-47 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11165 b17f7a007e96f17f0a3cc2ab3b99c33f 273 Gene3D G3DSA:1.10.3720.10 10 261 3.7E-43 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11165 b17f7a007e96f17f0a3cc2ab3b99c33f 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 266 5.9E-11 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11165 b17f7a007e96f17f0a3cc2ab3b99c33f 273 PANTHER PTHR30193 24 270 5.3E-81 T 23-04-2016 RD1_RS16765 d13a1748852169132f13b6b60ec102e2 541 Pfam PF00884 Sulfatase 3 385 1.8E-55 T 23-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 RD1_RS16765 d13a1748852169132f13b6b60ec102e2 541 Gene3D G3DSA:3.40.720.10 144 245 7.8E-97 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RD1_RS16765 d13a1748852169132f13b6b60ec102e2 541 Gene3D G3DSA:3.40.720.10 288 453 7.8E-97 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RD1_RS16765 d13a1748852169132f13b6b60ec102e2 541 Gene3D G3DSA:3.40.720.10 2 106 7.8E-97 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RD1_RS16765 d13a1748852169132f13b6b60ec102e2 541 Gene3D G3DSA:3.30.1120.10 454 496 2.3E-7 T 23-04-2016 RD1_RS16765 d13a1748852169132f13b6b60ec102e2 541 PANTHER PTHR10342 188 515 4.2E-222 T 23-04-2016 RD1_RS16765 d13a1748852169132f13b6b60ec102e2 541 PANTHER PTHR10342 3 152 4.2E-222 T 23-04-2016 RD1_RS16765 d13a1748852169132f13b6b60ec102e2 541 PANTHER PTHR10342:SF233 188 515 4.2E-222 T 23-04-2016 RD1_RS16765 d13a1748852169132f13b6b60ec102e2 541 PANTHER PTHR10342:SF233 3 152 4.2E-222 T 23-04-2016 RD1_RS16765 d13a1748852169132f13b6b60ec102e2 541 SUPERFAMILY SSF53649 144 494 3.53E-118 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RD1_RS16765 d13a1748852169132f13b6b60ec102e2 541 SUPERFAMILY SSF53649 2 107 3.53E-118 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RD1_RS10445 bf2691a24f39cfb09dff391354c79eef 76 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 1 75 4.7E-26 T 23-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS10445 bf2691a24f39cfb09dff391354c79eef 76 SUPERFAMILY SSF82697 1 75 1.66E-26 T 23-04-2016 RD1_RS10445 bf2691a24f39cfb09dff391354c79eef 76 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 9 75 2.0E-27 T 23-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS10445 bf2691a24f39cfb09dff391354c79eef 76 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 1 75 20.608 T 23-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS10445 bf2691a24f39cfb09dff391354c79eef 76 PANTHER PTHR34696 1 75 4.2E-25 T 23-04-2016 RD1_RS10445 bf2691a24f39cfb09dff391354c79eef 76 Gene3D G3DSA:3.30.1280.10 1 75 6.5E-33 T 23-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS10445 bf2691a24f39cfb09dff391354c79eef 76 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 2 75 1.2E-29 T 23-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS12635 7acafc420dd4fb983032a9a74f448dda 187 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 43 57 - T 23-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RD1_RS12635 7acafc420dd4fb983032a9a74f448dda 187 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 8 181 2.3E-51 T 23-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RD1_RS12635 7acafc420dd4fb983032a9a74f448dda 187 PANTHER PTHR21600:SF23 127 180 3.5E-72 T 23-04-2016 RD1_RS12635 7acafc420dd4fb983032a9a74f448dda 187 PANTHER PTHR21600:SF23 3 109 3.5E-72 T 23-04-2016 RD1_RS12635 7acafc420dd4fb983032a9a74f448dda 187 Pfam PF00849 RNA pseudouridylate synthase 4 153 1.7E-18 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS12635 7acafc420dd4fb983032a9a74f448dda 187 PANTHER PTHR21600 127 180 3.5E-72 T 23-04-2016 RD1_RS12635 7acafc420dd4fb983032a9a74f448dda 187 PANTHER PTHR21600 3 109 3.5E-72 T 23-04-2016 RD1_RS12635 7acafc420dd4fb983032a9a74f448dda 187 SUPERFAMILY SSF55120 3 182 8.8E-42 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS12990 35430017a6ddaca78a6e19904f518ca9 376 Gene3D G3DSA:3.20.20.70 44 137 9.4E-5 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS12990 35430017a6ddaca78a6e19904f518ca9 376 PIRSF PIRSF004640 6 369 9.1E-147 T 23-04-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RD1_RS12990 35430017a6ddaca78a6e19904f518ca9 376 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 14 358 1.3E-135 T 23-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RD1_RS12990 35430017a6ddaca78a6e19904f518ca9 376 SUPERFAMILY SSF51717 21 212 3.14E-9 T 23-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 RD1_RS12990 35430017a6ddaca78a6e19904f518ca9 376 PANTHER PTHR30454 8 370 2.4E-178 T 23-04-2016 RD1_RS12990 35430017a6ddaca78a6e19904f518ca9 376 SUPERFAMILY SSF56014 270 353 2.75E-14 T 23-04-2016 RD1_RS12990 35430017a6ddaca78a6e19904f518ca9 376 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 12 364 32.819 T 23-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RD1_RS12990 35430017a6ddaca78a6e19904f518ca9 376 Pfam PF04551 GcpE protein 18 360 2.2E-130 T 23-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RD1_RS14430 8e8482b2da31b8bbe82759e3f137b620 433 Pfam PF00271 Helicase conserved C-terminal domain 232 340 1.8E-28 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS14430 8e8482b2da31b8bbe82759e3f137b620 433 Gene3D G3DSA:3.40.50.300 2 212 1.4E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14430 8e8482b2da31b8bbe82759e3f137b620 433 Gene3D G3DSA:3.40.50.300 213 369 1.6E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14430 8e8482b2da31b8bbe82759e3f137b620 433 SUPERFAMILY SSF52540 75 361 3.6E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14430 8e8482b2da31b8bbe82759e3f137b620 433 Pfam PF00270 DEAD/DEAH box helicase 26 196 2.1E-48 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RD1_RS14430 8e8482b2da31b8bbe82759e3f137b620 433 PANTHER PTHR24031:SF261 1 433 5.2E-174 T 23-04-2016 RD1_RS14430 8e8482b2da31b8bbe82759e3f137b620 433 PANTHER PTHR24031 1 433 5.2E-174 T 23-04-2016 RD1_RS14430 8e8482b2da31b8bbe82759e3f137b620 433 SMART SM00490 259 340 3.3E-34 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS14430 8e8482b2da31b8bbe82759e3f137b620 433 SMART SM00487 21 223 1.4E-55 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD1_RS04000 4eb17c311e2030d23219dcbd52e01035 318 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 42 172 8.8E-61 T 23-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 RD1_RS04000 4eb17c311e2030d23219dcbd52e01035 318 PANTHER PTHR11603:SF148 12 316 1.1E-122 T 23-04-2016 RD1_RS04000 4eb17c311e2030d23219dcbd52e01035 318 PIRSF PIRSF002849 5 318 5.9E-118 T 23-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted RD1_RS04000 4eb17c311e2030d23219dcbd52e01035 318 SMART SM00382 39 180 0.0073 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS04000 4eb17c311e2030d23219dcbd52e01035 318 PANTHER PTHR11603 12 316 1.1E-122 T 23-04-2016 RD1_RS04000 4eb17c311e2030d23219dcbd52e01035 318 Gene3D G3DSA:1.10.8.300 206 315 7.6E-33 T 23-04-2016 RD1_RS04000 4eb17c311e2030d23219dcbd52e01035 318 SUPERFAMILY SSF52540 3 290 8.71E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04000 4eb17c311e2030d23219dcbd52e01035 318 Gene3D G3DSA:3.40.50.300 24 188 2.5E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13555 36a06712ad2c08ad3a4bd2f83b701f56 328 PANTHER PTHR30349 11 290 1.5E-79 T 23-04-2016 RD1_RS13555 36a06712ad2c08ad3a4bd2f83b701f56 328 PIRSF PIRSF017082 1 328 9.5E-83 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RD1_RS13555 36a06712ad2c08ad3a4bd2f83b701f56 328 Gene3D G3DSA:3.40.190.10 128 242 2.1E-7 T 23-04-2016 RD1_RS13555 36a06712ad2c08ad3a4bd2f83b701f56 328 PANTHER PTHR30349:SF25 11 290 1.5E-79 T 23-04-2016 RD1_RS13555 36a06712ad2c08ad3a4bd2f83b701f56 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 71 326 4.0E-25 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RD1_RS13555 36a06712ad2c08ad3a4bd2f83b701f56 328 SUPERFAMILY SSF53850 118 296 6.15E-11 T 23-04-2016 RD1_RS06890 67d8ac60afdafa418aee4ba23af09939 490 SUPERFAMILY SSF53850 68 458 1.45E-43 T 23-04-2016 RD1_RS06890 67d8ac60afdafa418aee4ba23af09939 490 PANTHER PTHR30061 74 480 3.8E-23 T 23-04-2016 RD1_RS06890 67d8ac60afdafa418aee4ba23af09939 490 Gene3D G3DSA:3.40.190.10 179 392 2.3E-23 T 23-04-2016 RD1_RS06890 67d8ac60afdafa418aee4ba23af09939 490 Gene3D G3DSA:3.40.190.10 70 178 1.2E-7 T 23-04-2016 RD1_RS06890 67d8ac60afdafa418aee4ba23af09939 490 Pfam PF13416 Bacterial extracellular solute-binding protein 75 396 3.1E-17 T 23-04-2016 RD1_RS12335 134c2cb0c560495427ddb0a23f533a8e 274 Gene3D G3DSA:3.40.50.300 90 186 9.9E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12335 134c2cb0c560495427ddb0a23f533a8e 274 SUPERFAMILY SSF52540 11 195 2.04E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15395 77756da82a5dde373e2bea2f730e39db 306 Pfam PF07478 D-ala D-ala ligase C-terminus 133 299 5.5E-34 T 23-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15395 77756da82a5dde373e2bea2f730e39db 306 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 69 80 - T 23-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15395 77756da82a5dde373e2bea2f730e39db 306 SUPERFAMILY SSF56059 102 301 4.84E-43 T 23-04-2016 RD1_RS15395 77756da82a5dde373e2bea2f730e39db 306 PANTHER PTHR23132 10 302 1.8E-72 T 23-04-2016 RD1_RS15395 77756da82a5dde373e2bea2f730e39db 306 SUPERFAMILY SSF52440 10 102 1.34E-30 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS15395 77756da82a5dde373e2bea2f730e39db 306 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 10 302 2.2E-75 T 23-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15395 77756da82a5dde373e2bea2f730e39db 306 Pfam PF01820 D-ala D-ala ligase N-terminus 10 90 6.6E-20 T 23-04-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15395 77756da82a5dde373e2bea2f730e39db 306 Gene3D G3DSA:3.30.1490.20 102 174 4.4E-10 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS15395 77756da82a5dde373e2bea2f730e39db 306 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 9 303 31.504 T 23-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15395 77756da82a5dde373e2bea2f730e39db 306 Gene3D G3DSA:3.30.470.20 92 101 3.2E-41 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS15395 77756da82a5dde373e2bea2f730e39db 306 Gene3D G3DSA:3.30.470.20 175 302 3.2E-41 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS15395 77756da82a5dde373e2bea2f730e39db 306 Gene3D G3DSA:3.40.50.20 10 89 3.2E-27 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS15395 77756da82a5dde373e2bea2f730e39db 306 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 242 273 - T 23-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS09145 6591e7bd953faa4701e6008783e5bdcc 545 Gene3D G3DSA:3.40.50.300 4 262 4.0E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09145 6591e7bd953faa4701e6008783e5bdcc 545 Pfam PF00005 ABC transporter 31 188 1.1E-20 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS09145 6591e7bd953faa4701e6008783e5bdcc 545 Pfam PF00005 ABC transporter 296 448 3.7E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS09145 6591e7bd953faa4701e6008783e5bdcc 545 SMART SM00382 39 246 2.8E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS09145 6591e7bd953faa4701e6008783e5bdcc 545 SMART SM00382 305 497 1.6E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS09145 6591e7bd953faa4701e6008783e5bdcc 545 ProSitePatterns PS00211 ABC transporters family signature. 420 434 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS09145 6591e7bd953faa4701e6008783e5bdcc 545 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 501 532 0.0048 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RD1_RS09145 6591e7bd953faa4701e6008783e5bdcc 545 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 240 272 0.0029 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RD1_RS09145 6591e7bd953faa4701e6008783e5bdcc 545 SUPERFAMILY SSF52540 25 260 2.6E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09145 6591e7bd953faa4701e6008783e5bdcc 545 SUPERFAMILY SSF52540 272 527 2.17E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09145 6591e7bd953faa4701e6008783e5bdcc 545 PANTHER PTHR24220 7 405 1.0E-99 T 23-04-2016 RD1_RS09145 6591e7bd953faa4701e6008783e5bdcc 545 PANTHER PTHR24220:SF586 7 405 1.0E-99 T 23-04-2016 RD1_RS09145 6591e7bd953faa4701e6008783e5bdcc 545 Gene3D G3DSA:3.40.50.300 268 526 1.2E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08500 39bbfb1216cb10640c672a9781dd81ce 247 SUPERFAMILY SSF53474 3 239 2.43E-53 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08500 39bbfb1216cb10640c672a9781dd81ce 247 Pfam PF12697 Alpha/beta hydrolase family 4 232 2.7E-22 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS08500 39bbfb1216cb10640c672a9781dd81ce 247 Gene3D G3DSA:3.40.50.1820 3 239 3.9E-50 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08500 39bbfb1216cb10640c672a9781dd81ce 247 PANTHER PTHR10992 3 240 1.9E-39 T 23-04-2016 RD1_RS08500 39bbfb1216cb10640c672a9781dd81ce 247 PANTHER PTHR10992:SF771 3 240 1.9E-39 T 23-04-2016 RD1_RS08500 39bbfb1216cb10640c672a9781dd81ce 247 PRINTS PR00111 Alpha/beta hydrolase fold signature 184 198 6.1E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS08500 39bbfb1216cb10640c672a9781dd81ce 247 PRINTS PR00111 Alpha/beta hydrolase fold signature 85 98 6.1E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS08500 39bbfb1216cb10640c672a9781dd81ce 247 PRINTS PR00111 Alpha/beta hydrolase fold signature 71 84 6.1E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS08500 39bbfb1216cb10640c672a9781dd81ce 247 PRINTS PR00111 Alpha/beta hydrolase fold signature 27 42 6.1E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS18435 0654a235aa933d7a3801685de25d2fe2 551 SUPERFAMILY SSF161098 293 545 1.85E-47 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18435 0654a235aa933d7a3801685de25d2fe2 551 SUPERFAMILY SSF161098 11 278 1.27E-55 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18435 0654a235aa933d7a3801685de25d2fe2 551 Gene3D G3DSA:1.10.3720.10 15 274 2.7E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18435 0654a235aa933d7a3801685de25d2fe2 551 Gene3D G3DSA:1.10.3720.10 290 539 8.2E-41 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18435 0654a235aa933d7a3801685de25d2fe2 551 PANTHER PTHR30183 5 549 7.4E-68 T 23-04-2016 RD1_RS18435 0654a235aa933d7a3801685de25d2fe2 551 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 268 3.4E-21 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18435 0654a235aa933d7a3801685de25d2fe2 551 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 364 534 1.7E-8 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS09930 6ad3a95fb94a7c65bdd4948e19506d0c 290 Gene3D G3DSA:3.40.50.1580 3 264 4.6E-90 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RD1_RS09930 6ad3a95fb94a7c65bdd4948e19506d0c 290 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 4 272 41.002 T 23-04-2016 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 RD1_RS09930 6ad3a95fb94a7c65bdd4948e19506d0c 290 TIGRFAM TIGR01694 MTAP: methylthioadenosine phosphorylase 5 242 1.6E-90 T 23-04-2016 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 RD1_RS09930 6ad3a95fb94a7c65bdd4948e19506d0c 290 SUPERFAMILY SSF53167 4 268 4.06E-93 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RD1_RS09930 6ad3a95fb94a7c65bdd4948e19506d0c 290 PANTHER PTHR11904:SF1 2 288 4.1E-130 T 23-04-2016 RD1_RS09930 6ad3a95fb94a7c65bdd4948e19506d0c 290 PANTHER PTHR11904 2 288 4.1E-130 T 23-04-2016 IPR001369 PNP/MTAP phosphorylase RD1_RS09930 6ad3a95fb94a7c65bdd4948e19506d0c 290 Pfam PF01048 Phosphorylase superfamily 5 223 1.7E-43 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RD1_RS12015 4559333c63dd960901daa70dd56176a6 204 Gene3D G3DSA:3.40.50.150 18 166 3.0E-19 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS12015 4559333c63dd960901daa70dd56176a6 204 PANTHER PTHR10108:SF919 6 153 8.0E-22 T 23-04-2016 RD1_RS12015 4559333c63dd960901daa70dd56176a6 204 SUPERFAMILY SSF53335 1 161 1.52E-20 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS12015 4559333c63dd960901daa70dd56176a6 204 PANTHER PTHR10108 6 153 8.0E-22 T 23-04-2016 RD1_RS12015 4559333c63dd960901daa70dd56176a6 204 Pfam PF13489 Methyltransferase domain 44 172 4.6E-9 T 23-04-2016 RD1_RS06135 d0787da98b9f7d67914958620bfefe50 390 Gene3D G3DSA:1.10.101.10 331 390 6.6E-10 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS06135 d0787da98b9f7d67914958620bfefe50 390 SUPERFAMILY SSF53955 11 321 3.37E-84 T 23-04-2016 IPR023346 Lysozyme-like domain RD1_RS06135 d0787da98b9f7d67914958620bfefe50 390 PANTHER PTHR30163 26 390 6.4E-112 T 23-04-2016 IPR011757 Lytic transglycosylase MltB RD1_RS06135 d0787da98b9f7d67914958620bfefe50 390 Pfam PF13406 Transglycosylase SLT domain 26 315 4.5E-82 T 23-04-2016 IPR031304 Transglycosylase SLT domain 2 RD1_RS06135 d0787da98b9f7d67914958620bfefe50 390 Pfam PF01471 Putative peptidoglycan binding domain 336 390 1.8E-8 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS06135 d0787da98b9f7d67914958620bfefe50 390 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 26 319 5.7E-93 T 23-04-2016 IPR011970 Lytic murein transglycosylase RD1_RS06135 d0787da98b9f7d67914958620bfefe50 390 PANTHER PTHR30163:SF2 26 390 6.4E-112 T 23-04-2016 RD1_RS06135 d0787da98b9f7d67914958620bfefe50 390 SUPERFAMILY SSF47090 326 390 6.02E-13 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS06135 d0787da98b9f7d67914958620bfefe50 390 Gene3D G3DSA:1.10.530.10 71 127 1.5E-41 T 23-04-2016 RD1_RS06135 d0787da98b9f7d67914958620bfefe50 390 Gene3D G3DSA:1.10.530.10 208 321 1.5E-41 T 23-04-2016 RD1_RS16545 1825e42a51f43a6068a25a4e7869012a 423 Gene3D G3DSA:3.40.50.2300 174 361 3.5E-66 T 23-04-2016 RD1_RS16545 1825e42a51f43a6068a25a4e7869012a 423 Pfam PF13433 Periplasmic binding protein domain 58 420 1.0E-135 T 23-04-2016 RD1_RS16545 1825e42a51f43a6068a25a4e7869012a 423 SUPERFAMILY SSF53822 56 418 6.39E-95 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS16545 1825e42a51f43a6068a25a4e7869012a 423 PANTHER PTHR30483:SF8 10 423 3.1E-192 T 23-04-2016 RD1_RS16545 1825e42a51f43a6068a25a4e7869012a 423 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 57 418 1.3E-166 T 23-04-2016 IPR017777 ABC transporter, urea, substrate-binding, UrtA RD1_RS16545 1825e42a51f43a6068a25a4e7869012a 423 PANTHER PTHR30483 10 423 3.1E-192 T 23-04-2016 RD1_RS16545 1825e42a51f43a6068a25a4e7869012a 423 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 79 95 3.9E-5 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RD1_RS16545 1825e42a51f43a6068a25a4e7869012a 423 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 289 307 3.9E-5 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RD1_RS16545 1825e42a51f43a6068a25a4e7869012a 423 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 120 130 3.9E-5 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RD1_RS16545 1825e42a51f43a6068a25a4e7869012a 423 Gene3D G3DSA:3.40.50.2300 55 148 2.3E-4 T 23-04-2016 RD1_RS02785 820824def05090b09b987dd202501326 139 SUPERFAMILY SSF54593 20 133 1.65E-18 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS02785 820824def05090b09b987dd202501326 139 Gene3D G3DSA:3.10.180.10 17 133 2.9E-17 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS05050 c87321196f2f8abb32534d527695c2ae 342 PANTHER PTHR30465:SF43 1 337 7.9E-103 T 23-04-2016 RD1_RS05050 c87321196f2f8abb32534d527695c2ae 342 Gene3D G3DSA:1.10.3720.10 104 326 2.0E-12 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS05050 c87321196f2f8abb32534d527695c2ae 342 PRINTS PR00342 Rhesus blood group protein signature 169 184 7.2E-5 T 23-04-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 RD1_RS05050 c87321196f2f8abb32534d527695c2ae 342 PRINTS PR00342 Rhesus blood group protein signature 10 28 7.2E-5 T 23-04-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 RD1_RS05050 c87321196f2f8abb32534d527695c2ae 342 PRINTS PR00342 Rhesus blood group protein signature 314 330 7.2E-5 T 23-04-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 RD1_RS05050 c87321196f2f8abb32534d527695c2ae 342 PRINTS PR00342 Rhesus blood group protein signature 108 124 7.2E-5 T 23-04-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 RD1_RS05050 c87321196f2f8abb32534d527695c2ae 342 SUPERFAMILY SSF161098 107 319 1.64E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS05050 c87321196f2f8abb32534d527695c2ae 342 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 131 337 4.0E-27 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS05050 c87321196f2f8abb32534d527695c2ae 342 PANTHER PTHR30465 1 337 7.9E-103 T 23-04-2016 RD1_RS15265 9fc43cb20a9a4427b6de7cc1164af163 258 PANTHER PTHR11922 39 69 4.5E-40 T 23-04-2016 RD1_RS15265 9fc43cb20a9a4427b6de7cc1164af163 258 PANTHER PTHR11922 85 244 4.5E-40 T 23-04-2016 RD1_RS15265 9fc43cb20a9a4427b6de7cc1164af163 258 Gene3D G3DSA:3.40.50.880 2 246 1.9E-35 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS15265 9fc43cb20a9a4427b6de7cc1164af163 258 PANTHER PTHR11922:SF18 39 69 4.5E-40 T 23-04-2016 RD1_RS15265 9fc43cb20a9a4427b6de7cc1164af163 258 PANTHER PTHR11922:SF18 85 244 4.5E-40 T 23-04-2016 RD1_RS15265 9fc43cb20a9a4427b6de7cc1164af163 258 SUPERFAMILY SSF52317 2 245 7.44E-34 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS15265 9fc43cb20a9a4427b6de7cc1164af163 258 Pfam PF07722 Peptidase C26 4 223 2.3E-56 T 23-04-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 RD1_RS05380 9e85ff33e9f4c7a998f85b248229ac5c 304 Gene3D G3DSA:1.10.10.10 6 87 6.4E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS05380 9e85ff33e9f4c7a998f85b248229ac5c 304 Pfam PF03466 LysR substrate binding domain 98 296 5.8E-16 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS05380 9e85ff33e9f4c7a998f85b248229ac5c 304 SUPERFAMILY SSF53850 98 300 9.15E-27 T 23-04-2016 RD1_RS05380 9e85ff33e9f4c7a998f85b248229ac5c 304 Gene3D G3DSA:3.40.190.10 94 177 2.3E-13 T 23-04-2016 RD1_RS05380 9e85ff33e9f4c7a998f85b248229ac5c 304 Gene3D G3DSA:3.40.190.10 273 300 2.3E-13 T 23-04-2016 RD1_RS05380 9e85ff33e9f4c7a998f85b248229ac5c 304 PANTHER PTHR30118 1 298 3.1E-51 T 23-04-2016 RD1_RS05380 9e85ff33e9f4c7a998f85b248229ac5c 304 Gene3D G3DSA:3.40.190.10 186 269 1.2E-15 T 23-04-2016 RD1_RS05380 9e85ff33e9f4c7a998f85b248229ac5c 304 SUPERFAMILY SSF46785 8 86 2.23E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS05380 9e85ff33e9f4c7a998f85b248229ac5c 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 67 1.8E-15 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS06325 bb7de78baad56ab9dba58f635e29cf05 241 Hamap MF_00201 DNA repair protein RecO [recO]. 1 237 18.437 T 23-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RD1_RS06325 bb7de78baad56ab9dba58f635e29cf05 241 PANTHER PTHR33991 1 192 5.5E-23 T 23-04-2016 RD1_RS06325 bb7de78baad56ab9dba58f635e29cf05 241 SUPERFAMILY SSF57863 92 183 2.17E-11 T 23-04-2016 RD1_RS06325 bb7de78baad56ab9dba58f635e29cf05 241 Gene3D G3DSA:2.40.50.140 3 57 9.5E-5 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS06325 bb7de78baad56ab9dba58f635e29cf05 241 TIGRFAM TIGR00613 reco: DNA repair protein RecO 3 177 9.2E-33 T 23-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RD1_RS06325 bb7de78baad56ab9dba58f635e29cf05 241 SUPERFAMILY SSF50249 1 67 2.57E-10 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS06325 bb7de78baad56ab9dba58f635e29cf05 241 Pfam PF02565 Recombination protein O C terminal 84 222 6.8E-22 T 23-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RD1_RS06325 bb7de78baad56ab9dba58f635e29cf05 241 Pfam PF11967 Recombination protein O N terminal 1 70 2.6E-18 T 23-04-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal RD1_RS06325 bb7de78baad56ab9dba58f635e29cf05 241 ProDom PD202328 DNA REPAIR RECOMBINATION RECO DAMAGE O O RECO-RELATED RECOMBINATIONAL RP549 132 235 1.0E-22 T 23-04-2016 RD1_RS16725 775839467c2661703b1dad9fdfc1bf7f 374 Gene3D G3DSA:2.40.50.100 353 367 2.5E-5 T 23-04-2016 RD1_RS16725 775839467c2661703b1dad9fdfc1bf7f 374 Gene3D G3DSA:2.40.50.100 245 298 2.5E-5 T 23-04-2016 RD1_RS16725 775839467c2661703b1dad9fdfc1bf7f 374 Pfam PF00005 ABC transporter 26 167 5.9E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS16725 775839467c2661703b1dad9fdfc1bf7f 374 PANTHER PTHR24220:SF151 7 256 1.5E-97 T 23-04-2016 RD1_RS16725 775839467c2661703b1dad9fdfc1bf7f 374 Gene3D G3DSA:3.40.50.300 2 242 3.1E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16725 775839467c2661703b1dad9fdfc1bf7f 374 SUPERFAMILY SSF52540 5 248 9.98E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16725 775839467c2661703b1dad9fdfc1bf7f 374 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS16725 775839467c2661703b1dad9fdfc1bf7f 374 SMART SM00382 34 217 2.6E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS16725 775839467c2661703b1dad9fdfc1bf7f 374 SUPERFAMILY SSF50331 243 367 3.64E-19 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS16725 775839467c2661703b1dad9fdfc1bf7f 374 PANTHER PTHR24220 7 256 1.5E-97 T 23-04-2016 RD1_RS16725 775839467c2661703b1dad9fdfc1bf7f 374 Pfam PF08402 TOBE domain 292 359 2.7E-7 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS05560 5ff8587cc24e91bfa5231d6c572e15af 647 Pfam PF00905 Penicillin binding protein transpeptidase domain 269 602 1.7E-62 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RD1_RS05560 5ff8587cc24e91bfa5231d6c572e15af 647 Gene3D G3DSA:3.90.1310.10 128 249 5.7E-30 T 23-04-2016 RD1_RS05560 5ff8587cc24e91bfa5231d6c572e15af 647 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 17 606 5.7E-220 T 23-04-2016 IPR017790 Penicillin-binding protein 2 GO:0016020 UniPathway: UPA00219 RD1_RS05560 5ff8587cc24e91bfa5231d6c572e15af 647 Pfam PF03717 Penicillin-binding Protein dimerisation domain 62 236 6.5E-39 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RD1_RS05560 5ff8587cc24e91bfa5231d6c572e15af 647 SUPERFAMILY SSF56601 252 607 7.34E-89 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS05560 5ff8587cc24e91bfa5231d6c572e15af 647 PANTHER PTHR30627 3 644 2.6E-181 T 23-04-2016 RD1_RS05560 5ff8587cc24e91bfa5231d6c572e15af 647 SUPERFAMILY SSF56519 54 250 2.62E-45 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RD1_RS05560 5ff8587cc24e91bfa5231d6c572e15af 647 PANTHER PTHR30627:SF2 3 644 2.6E-181 T 23-04-2016 RD1_RS05560 5ff8587cc24e91bfa5231d6c572e15af 647 Gene3D G3DSA:3.40.710.10 250 607 1.7E-97 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS07275 6d475d132641a103666f91ffd3fd3bd4 250 Pfam PF01903 CbiX 143 222 2.4E-10 T 23-04-2016 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377|UniPathway: UPA00148 RD1_RS07275 6d475d132641a103666f91ffd3fd3bd4 250 SUPERFAMILY SSF53800 17 190 8.9E-16 T 23-04-2016 RD1_RS07275 6d475d132641a103666f91ffd3fd3bd4 250 SUPERFAMILY SSF53800 135 242 4.14E-16 T 23-04-2016 RD1_RS07275 6d475d132641a103666f91ffd3fd3bd4 250 Gene3D G3DSA:3.40.50.1400 16 123 1.6E-16 T 23-04-2016 RD1_RS07275 6d475d132641a103666f91ffd3fd3bd4 250 Gene3D G3DSA:3.40.50.1400 134 219 1.5E-18 T 23-04-2016 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 Gene3D G3DSA:3.40.1380.20 324 468 4.4E-42 T 23-04-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 5 469 6.1E-154 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 Gene3D G3DSA:2.40.33.10 76 169 2.3E-26 T 23-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 PRINTS PR01050 Pyruvate kinase family signature 267 291 5.1E-66 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 PRINTS PR01050 Pyruvate kinase family signature 292 310 5.1E-66 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 PRINTS PR01050 Pyruvate kinase family signature 215 241 5.1E-66 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 PRINTS PR01050 Pyruvate kinase family signature 188 202 5.1E-66 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 PRINTS PR01050 Pyruvate kinase family signature 242 266 5.1E-66 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 PRINTS PR01050 Pyruvate kinase family signature 311 327 5.1E-66 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 PRINTS PR01050 Pyruvate kinase family signature 62 78 5.1E-66 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 PANTHER PTHR11817 2 476 7.0E-191 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 SUPERFAMILY SSF52935 321 471 2.09E-36 T 23-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 SUPERFAMILY SSF50800 73 169 1.33E-24 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 Pfam PF02887 Pyruvate kinase, alpha/beta domain 358 468 7.1E-31 T 23-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 SUPERFAMILY SSF51621 158 341 3.14E-96 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 SUPERFAMILY SSF51621 2 77 3.14E-96 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 Pfam PF00224 Pyruvate kinase, barrel domain 5 336 1.5E-114 T 23-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 Gene3D G3DSA:3.20.20.60 5 75 7.7E-96 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS04640 a31cfe4e240778716efac40d0171faf4 482 Gene3D G3DSA:3.20.20.60 170 323 7.7E-96 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS12530 f771e7480387805c5170876dc232b1ab 382 Hamap MF_01665 Heme A synthase [ctaA]. 34 374 25.104 T 23-04-2016 IPR023754 Heme A synthase, type 2 GO:0006784|GO:0016020|GO:0016627|GO:0055114 UniPathway: UPA00269 RD1_RS12530 f771e7480387805c5170876dc232b1ab 382 PANTHER PTHR23289 33 365 1.3E-105 T 23-04-2016 RD1_RS12530 f771e7480387805c5170876dc232b1ab 382 Pfam PF02628 Cytochrome oxidase assembly protein 38 364 4.3E-100 T 23-04-2016 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 UniPathway: UPA00269 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 Gene3D G3DSA:3.30.390.30 331 455 2.9E-52 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 23-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 343 452 1.2E-41 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 171 196 6.3E-82 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 304 311 6.3E-82 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 6.3E-82 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 339 360 6.3E-82 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 426 446 6.3E-82 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 6.3E-82 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 261 275 6.3E-82 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 6.3E-82 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 404 419 6.3E-82 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PIRSF PIRSF000350 1 457 1.9E-98 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 3 462 1.7E-174 T 23-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 324 2.8E-73 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PANTHER PTHR22912 3 455 6.7E-244 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 SUPERFAMILY SSF51905 2 364 2.12E-69 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 Gene3D G3DSA:3.50.50.60 3 140 5.6E-43 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PANTHER PTHR22912:SF151 3 455 6.7E-244 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.7E-41 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 260 276 1.7E-41 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 289 311 1.7E-41 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 1.7E-41 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 171 189 1.7E-41 T 23-04-2016 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 Gene3D G3DSA:3.50.50.60 141 330 2.7E-58 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07395 9877fc1ebc83fd352d64f390801b3c24 462 SUPERFAMILY SSF55424 340 455 6.53E-44 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RD1_RS06145 f7f5509b0dc5c69e1de0edb46f090a13 317 Pfam PF00155 Aminotransferase class I and II 133 303 7.3E-18 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS06145 f7f5509b0dc5c69e1de0edb46f090a13 317 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 8 317 5.2E-89 T 23-04-2016 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443|UniPathway: UPA00148 RD1_RS06145 f7f5509b0dc5c69e1de0edb46f090a13 317 PANTHER PTHR11751 1 317 2.7E-44 T 23-04-2016 RD1_RS06145 f7f5509b0dc5c69e1de0edb46f090a13 317 Gene3D G3DSA:3.90.1150.10 227 316 9.4E-4 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS06145 f7f5509b0dc5c69e1de0edb46f090a13 317 PANTHER PTHR11751:SF3 1 317 2.7E-44 T 23-04-2016 RD1_RS06145 f7f5509b0dc5c69e1de0edb46f090a13 317 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 183 196 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 RD1_RS06145 f7f5509b0dc5c69e1de0edb46f090a13 317 Gene3D G3DSA:3.40.640.10 46 226 9.6E-32 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS06145 f7f5509b0dc5c69e1de0edb46f090a13 317 SUPERFAMILY SSF53383 20 316 6.66E-44 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS07725 8f54f26299385c356c85df8793700393 446 SUPERFAMILY SSF48452 94 122 6.18E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS07725 8f54f26299385c356c85df8793700393 446 SUPERFAMILY SSF48452 173 292 6.18E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS07725 8f54f26299385c356c85df8793700393 446 Gene3D G3DSA:1.25.40.10 42 265 8.5E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS07725 8f54f26299385c356c85df8793700393 446 PANTHER PTHR16263 47 422 8.9E-80 T 23-04-2016 RD1_RS10485 8a2982779a57db04eafa948cf254490e 80 Pfam PF13467 Ribbon-helix-helix domain 6 68 1.1E-24 T 23-04-2016 IPR027373 Ribbon-helix-helix domain RD1_RS15965 6ca58913ac4bc1bf6707618fb20803a8 265 PANTHER PTHR40267 11 253 4.4E-30 T 23-04-2016 RD1_RS15965 6ca58913ac4bc1bf6707618fb20803a8 265 PIRSF PIRSF015736 2 250 6.6E-68 T 23-04-2016 IPR026286 Maleate isomerase/Arylmalonate decarboxylase RD1_RS15965 6ca58913ac4bc1bf6707618fb20803a8 265 Pfam PF01177 Asp/Glu/Hydantoin racemase 110 228 1.2E-7 T 23-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS04650 a85568683a75de66c55900df2b9e887f 66 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 23-04-2016 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS04650 a85568683a75de66c55900df2b9e887f 66 PRINTS PR00064 Ribosomal protein L35 signature 21 35 4.2E-10 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RD1_RS04650 a85568683a75de66c55900df2b9e887f 66 PRINTS PR00064 Ribosomal protein L35 signature 3 20 4.2E-10 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RD1_RS04650 a85568683a75de66c55900df2b9e887f 66 PRINTS PR00064 Ribosomal protein L35 signature 36 54 4.2E-10 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RD1_RS04650 a85568683a75de66c55900df2b9e887f 66 Pfam PF01632 Ribosomal protein L35 2 60 3.8E-21 T 23-04-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS04650 a85568683a75de66c55900df2b9e887f 66 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 16.47 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RD1_RS04650 a85568683a75de66c55900df2b9e887f 66 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 1.3E-21 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RD1_RS04650 a85568683a75de66c55900df2b9e887f 66 PANTHER PTHR33343 1 64 1.2E-18 T 23-04-2016 RD1_RS04650 a85568683a75de66c55900df2b9e887f 66 SUPERFAMILY SSF143034 2 64 1.7E-22 T 23-04-2016 RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 SUPERFAMILY SSF54665 4 161 1.7E-44 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 SUPERFAMILY SSF56003 131 789 1.09E-199 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 Gene3D G3DSA:3.30.365.10 465 634 1.4E-47 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 Gene3D G3DSA:3.30.365.10 635 789 3.2E-66 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 Gene3D G3DSA:3.30.365.10 375 464 3.2E-66 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 Gene3D G3DSA:3.30.365.10 128 187 5.0E-48 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 Gene3D G3DSA:3.30.365.10 296 372 5.0E-48 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 Gene3D G3DSA:3.90.1170.50 5 127 1.6E-39 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 SMART SM01008 21 139 1.5E-51 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 PANTHER PTHR11908 603 789 0.0 T 23-04-2016 RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 PANTHER PTHR11908 6 586 0.0 T 23-04-2016 RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 21 139 9.6E-25 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 155 720 2.3E-172 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 PANTHER PTHR11908:SF85 603 789 0.0 T 23-04-2016 RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 PANTHER PTHR11908:SF85 6 586 0.0 T 23-04-2016 RD1_RS13680 4dd62abdfd244997cee0153f9d076fe2 790 Gene3D G3DSA:3.30.365.10 188 294 7.6E-33 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS17060 768ad5fc67edea34e9f7791b0b477cf8 311 SUPERFAMILY SSF161098 10 311 2.35E-72 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17060 768ad5fc67edea34e9f7791b0b477cf8 311 Gene3D G3DSA:1.10.3720.10 6 297 4.9E-63 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17060 768ad5fc67edea34e9f7791b0b477cf8 311 PANTHER PTHR32243 1 145 3.9E-81 T 23-04-2016 RD1_RS17060 768ad5fc67edea34e9f7791b0b477cf8 311 PANTHER PTHR32243 167 311 3.9E-81 T 23-04-2016 RD1_RS17060 768ad5fc67edea34e9f7791b0b477cf8 311 PANTHER PTHR32243:SF18 1 145 3.9E-81 T 23-04-2016 RD1_RS17060 768ad5fc67edea34e9f7791b0b477cf8 311 PANTHER PTHR32243:SF18 167 311 3.9E-81 T 23-04-2016 RD1_RS17060 768ad5fc67edea34e9f7791b0b477cf8 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 288 2.5E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.5E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 2.5E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.5E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 2.5E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 2.5E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.5E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 PANTHER PTHR24322:SF264 161 193 4.9E-44 T 23-04-2016 RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 PANTHER PTHR24322:SF264 14 144 4.9E-44 T 23-04-2016 RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 249 6.5E-54 T 23-04-2016 RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 3.2E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 3.2E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 3.2E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 Gene3D G3DSA:3.40.50.720 11 250 1.7E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 PANTHER PTHR24322 161 193 4.9E-44 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 PANTHER PTHR24322 14 144 4.9E-44 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS10770 73de9e44108a87dfdd08af8ff6083759 251 SUPERFAMILY SSF51735 12 250 1.69E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS08955 bcd2b92963f24849584349173bbdb5d8 234 Gene3D G3DSA:1.20.1050.10 86 207 5.2E-44 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS08955 bcd2b92963f24849584349173bbdb5d8 234 Pfam PF02798 Glutathione S-transferase, N-terminal domain 5 82 6.8E-13 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RD1_RS08955 bcd2b92963f24849584349173bbdb5d8 234 Pfam PF00043 Glutathione S-transferase, C-terminal domain 139 204 6.6E-8 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal RD1_RS08955 bcd2b92963f24849584349173bbdb5d8 234 PANTHER PTHR11260 1 206 1.3E-60 T 23-04-2016 RD1_RS08955 bcd2b92963f24849584349173bbdb5d8 234 SUPERFAMILY SSF47616 92 214 5.29E-32 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS08955 bcd2b92963f24849584349173bbdb5d8 234 Gene3D G3DSA:3.40.30.10 2 85 5.7E-25 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS08955 bcd2b92963f24849584349173bbdb5d8 234 PANTHER PTHR11260:SF178 1 206 1.3E-60 T 23-04-2016 RD1_RS08955 bcd2b92963f24849584349173bbdb5d8 234 SUPERFAMILY SSF52833 3 86 1.14E-19 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS12225 ab2f188ad971060969906328afa95223 254 Gene3D G3DSA:3.40.630.30 11 148 2.0E-25 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS12225 ab2f188ad971060969906328afa95223 254 PANTHER PTHR37323 9 251 2.0E-37 T 23-04-2016 RD1_RS12225 ab2f188ad971060969906328afa95223 254 Pfam PF13444 Acetyltransferase (GNAT) domain 26 128 6.8E-30 T 23-04-2016 RD1_RS12225 ab2f188ad971060969906328afa95223 254 SUPERFAMILY SSF55729 8 225 2.17E-40 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS12225 ab2f188ad971060969906328afa95223 254 PANTHER PTHR37323:SF1 9 251 2.0E-37 T 23-04-2016 RD1_RS05470 52ede1241e0c29d82e7e960caacba35a 521 PIRSF PIRSF002869 3 512 1.7E-126 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RD1_RS05470 52ede1241e0c29d82e7e960caacba35a 521 PANTHER PTHR11206:SF90 71 87 3.1E-48 T 23-04-2016 RD1_RS05470 52ede1241e0c29d82e7e960caacba35a 521 PANTHER PTHR11206:SF90 217 460 3.1E-48 T 23-04-2016 RD1_RS05470 52ede1241e0c29d82e7e960caacba35a 521 PANTHER PTHR11206 71 87 3.1E-48 T 23-04-2016 RD1_RS05470 52ede1241e0c29d82e7e960caacba35a 521 PANTHER PTHR11206 217 460 3.1E-48 T 23-04-2016 RD1_RS05470 52ede1241e0c29d82e7e960caacba35a 521 PRINTS PR01806 Virulence factor MviN signature 356 375 6.5E-62 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RD1_RS05470 52ede1241e0c29d82e7e960caacba35a 521 PRINTS PR01806 Virulence factor MviN signature 133 157 6.5E-62 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RD1_RS05470 52ede1241e0c29d82e7e960caacba35a 521 PRINTS PR01806 Virulence factor MviN signature 55 71 6.5E-62 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RD1_RS05470 52ede1241e0c29d82e7e960caacba35a 521 PRINTS PR01806 Virulence factor MviN signature 157 178 6.5E-62 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RD1_RS05470 52ede1241e0c29d82e7e960caacba35a 521 PRINTS PR01806 Virulence factor MviN signature 408 425 6.5E-62 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RD1_RS05470 52ede1241e0c29d82e7e960caacba35a 521 PRINTS PR01806 Virulence factor MviN signature 36 55 6.5E-62 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RD1_RS05470 52ede1241e0c29d82e7e960caacba35a 521 PRINTS PR01806 Virulence factor MviN signature 258 284 6.5E-62 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RD1_RS05470 52ede1241e0c29d82e7e960caacba35a 521 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 7 493 1.2E-115 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RD1_RS05470 52ede1241e0c29d82e7e960caacba35a 521 Pfam PF03023 MviN-like protein 33 466 1.1E-96 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RD1_RS03045 8c38ac7aba83c7947ea6713c61e6a3c6 334 Pfam PF01791 DeoC/LacD family aldolase 70 311 7.5E-23 T 23-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 RD1_RS03045 8c38ac7aba83c7947ea6713c61e6a3c6 334 PANTHER PTHR10889 21 326 9.1E-166 T 23-04-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 RD1_RS03045 8c38ac7aba83c7947ea6713c61e6a3c6 334 SMART SM01133 69 315 3.2E-71 T 23-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 RD1_RS03045 8c38ac7aba83c7947ea6713c61e6a3c6 334 PANTHER PTHR10889:SF3 21 326 9.1E-166 T 23-04-2016 RD1_RS03045 8c38ac7aba83c7947ea6713c61e6a3c6 334 SUPERFAMILY SSF51569 63 317 5.34E-74 T 23-04-2016 RD1_RS03045 8c38ac7aba83c7947ea6713c61e6a3c6 334 Gene3D G3DSA:3.20.20.70 62 326 5.9E-85 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS03045 8c38ac7aba83c7947ea6713c61e6a3c6 334 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 71 296 8.7E-47 T 23-04-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 RD1_RS12235 25ab82604e2709a65a8f2ce9d26fb60a 421 Gene3D G3DSA:3.40.309.10 232 378 5.2E-36 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RD1_RS12235 25ab82604e2709a65a8f2ce9d26fb60a 421 PANTHER PTHR11063 4 421 1.8E-163 T 23-04-2016 RD1_RS12235 25ab82604e2709a65a8f2ce9d26fb60a 421 SUPERFAMILY SSF53720 10 419 1.96E-107 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS12235 25ab82604e2709a65a8f2ce9d26fb60a 421 PANTHER PTHR11063:SF8 4 421 1.8E-163 T 23-04-2016 RD1_RS12235 25ab82604e2709a65a8f2ce9d26fb60a 421 Gene3D G3DSA:3.40.605.10 6 229 1.5E-94 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RD1_RS12235 25ab82604e2709a65a8f2ce9d26fb60a 421 Gene3D G3DSA:3.40.605.10 379 420 1.5E-94 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RD1_RS12235 25ab82604e2709a65a8f2ce9d26fb60a 421 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 327 348 - T 23-04-2016 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RD1_RS12235 25ab82604e2709a65a8f2ce9d26fb60a 421 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 10 420 39.432 T 23-04-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RD1_RS12235 25ab82604e2709a65a8f2ce9d26fb60a 421 Pfam PF00171 Aldehyde dehydrogenase family 18 286 8.1E-14 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RD1_RS12235 25ab82604e2709a65a8f2ce9d26fb60a 421 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 18 410 3.9E-138 T 23-04-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RD1_RS12235 25ab82604e2709a65a8f2ce9d26fb60a 421 PIRSF PIRSF000151 3 421 3.0E-166 T 23-04-2016 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RD1_RS08890 83c22c81a380a8b900a097007de011a7 299 PANTHER PTHR10264 7 290 1.3E-66 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RD1_RS08890 83c22c81a380a8b900a097007de011a7 299 Pfam PF01145 SPFH domain / Band 7 family 24 203 4.3E-26 T 23-04-2016 IPR001107 Band 7 domain RD1_RS08890 83c22c81a380a8b900a097007de011a7 299 PANTHER PTHR10264:SF80 7 290 1.3E-66 T 23-04-2016 RD1_RS08890 83c22c81a380a8b900a097007de011a7 299 SUPERFAMILY SSF117892 52 193 5.89E-24 T 23-04-2016 IPR001107 Band 7 domain RD1_RS08890 83c22c81a380a8b900a097007de011a7 299 SMART SM00244 20 186 1.7E-25 T 23-04-2016 IPR001107 Band 7 domain RD1_RS08890 83c22c81a380a8b900a097007de011a7 299 PIRSF PIRSF005651 1 294 3.8E-81 T 23-04-2016 IPR010200 HflC GO:0016021|GO:0052547 RD1_RS10385 46e6f55ac3f2c699d216f51eb7262194 441 Gene3D G3DSA:1.10.287.130 224 287 4.9E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS10385 46e6f55ac3f2c699d216f51eb7262194 441 SMART SM00387 332 441 5.4E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS10385 46e6f55ac3f2c699d216f51eb7262194 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 402 420 1.1E-8 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS10385 46e6f55ac3f2c699d216f51eb7262194 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 380 1.1E-8 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS10385 46e6f55ac3f2c699d216f51eb7262194 441 Pfam PF00672 HAMP domain 166 229 1.5E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS10385 46e6f55ac3f2c699d216f51eb7262194 441 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 336 424 4.8E-14 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS10385 46e6f55ac3f2c699d216f51eb7262194 441 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 277 1.7E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS10385 46e6f55ac3f2c699d216f51eb7262194 441 SMART SM00304 182 233 0.0017 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS10385 46e6f55ac3f2c699d216f51eb7262194 441 SMART SM00388 234 291 1.1E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS10385 46e6f55ac3f2c699d216f51eb7262194 441 Gene3D G3DSA:3.30.565.10 293 429 3.4E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS10385 46e6f55ac3f2c699d216f51eb7262194 441 PANTHER PTHR24423 176 439 7.3E-45 T 23-04-2016 RD1_RS10385 46e6f55ac3f2c699d216f51eb7262194 441 PANTHER PTHR24423 5 12 7.3E-45 T 23-04-2016 RD1_RS10385 46e6f55ac3f2c699d216f51eb7262194 441 SUPERFAMILY SSF47384 220 289 4.32E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS10385 46e6f55ac3f2c699d216f51eb7262194 441 SUPERFAMILY SSF55874 292 428 3.41E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS11285 e7be1fd187a92b7fe9c83e209a7c1351 291 SUPERFAMILY SSF50182 107 170 1.47E-15 T 23-04-2016 IPR010920 LSM domain RD1_RS11285 e7be1fd187a92b7fe9c83e209a7c1351 291 Pfam PF00924 Mechanosensitive ion channel 68 265 7.3E-45 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RD1_RS11285 e7be1fd187a92b7fe9c83e209a7c1351 291 Gene3D G3DSA:3.30.70.100 177 263 4.3E-18 T 23-04-2016 RD1_RS11285 e7be1fd187a92b7fe9c83e209a7c1351 291 SUPERFAMILY SSF82689 174 276 1.03E-23 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RD1_RS11285 e7be1fd187a92b7fe9c83e209a7c1351 291 SUPERFAMILY SSF82861 21 106 9.94E-7 T 23-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RD1_RS11285 e7be1fd187a92b7fe9c83e209a7c1351 291 PANTHER PTHR30221 5 277 1.3E-91 T 23-04-2016 RD1_RS11285 e7be1fd187a92b7fe9c83e209a7c1351 291 Pfam PF05552 Conserved TM helix 12 52 8.1E-7 T 23-04-2016 IPR008910 Conserved TM helix RD1_RS11285 e7be1fd187a92b7fe9c83e209a7c1351 291 PANTHER PTHR30221:SF7 5 277 1.3E-91 T 23-04-2016 RD1_RS11285 e7be1fd187a92b7fe9c83e209a7c1351 291 Gene3D G3DSA:2.30.30.60 123 170 2.3E-15 T 23-04-2016 RD1_RS13510 0266e5aa4c9b30be9392ffad6b71fa12 279 PANTHER PTHR32243:SF31 1 277 4.2E-68 T 23-04-2016 IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE GO:0001407|GO:0005887|GO:0015794|GO:0055052 RD1_RS13510 0266e5aa4c9b30be9392ffad6b71fa12 279 PANTHER PTHR32243 1 277 4.2E-68 T 23-04-2016 RD1_RS13510 0266e5aa4c9b30be9392ffad6b71fa12 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 268 9.5E-8 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13510 0266e5aa4c9b30be9392ffad6b71fa12 279 SUPERFAMILY SSF161098 8 271 1.96E-43 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13510 0266e5aa4c9b30be9392ffad6b71fa12 279 Gene3D G3DSA:1.10.3720.10 9 266 8.3E-35 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS09880 25b153a8434f77a4cfc2d608f2690159 273 Pfam PF00510 Cytochrome c oxidase subunit III 7 265 5.5E-78 T 23-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RD1_RS09880 25b153a8434f77a4cfc2d608f2690159 273 SUPERFAMILY SSF81452 4 265 1.05E-86 T 23-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RD1_RS09880 25b153a8434f77a4cfc2d608f2690159 273 Gene3D G3DSA:1.10.287.70 3 69 7.9E-28 T 23-04-2016 RD1_RS09880 25b153a8434f77a4cfc2d608f2690159 273 PANTHER PTHR11403 1 269 5.3E-104 T 23-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 RD1_RS09880 25b153a8434f77a4cfc2d608f2690159 273 PANTHER PTHR11403:SF7 1 269 5.3E-104 T 23-04-2016 RD1_RS09880 25b153a8434f77a4cfc2d608f2690159 273 Gene3D G3DSA:1.20.120.80 71 264 9.9E-62 T 23-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 RD1_RS10865 4aeb93d19559404184b8c198078d07bc 356 PANTHER PTHR21266:SF19 1 340 2.7E-77 T 23-04-2016 RD1_RS10865 4aeb93d19559404184b8c198078d07bc 356 SUPERFAMILY SSF50022 2 114 1.27E-36 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS10865 4aeb93d19559404184b8c198078d07bc 356 Pfam PF00355 Rieske [2Fe-2S] domain 9 90 1.2E-17 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS10865 4aeb93d19559404184b8c198078d07bc 356 PANTHER PTHR21266 1 340 2.7E-77 T 23-04-2016 RD1_RS10865 4aeb93d19559404184b8c198078d07bc 356 Gene3D G3DSA:2.102.10.10 6 119 1.4E-34 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS10865 4aeb93d19559404184b8c198078d07bc 356 SUPERFAMILY SSF55961 120 341 6.04E-40 T 23-04-2016 RD1_RS12065 d770a0b8f896b3bbccbd34c785e49026 366 PANTHER PTHR22572 214 318 6.1E-39 T 23-04-2016 RD1_RS12065 d770a0b8f896b3bbccbd34c785e49026 366 PANTHER PTHR22572 99 183 6.1E-39 T 23-04-2016 RD1_RS12065 d770a0b8f896b3bbccbd34c785e49026 366 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 113 147 5.4E-8 T 23-04-2016 IPR001451 Hexapeptide repeat RD1_RS12065 d770a0b8f896b3bbccbd34c785e49026 366 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 245 280 1.5E-8 T 23-04-2016 IPR001451 Hexapeptide repeat RD1_RS12065 d770a0b8f896b3bbccbd34c785e49026 366 Gene3D G3DSA:2.160.10.10 217 330 3.9E-47 T 23-04-2016 RD1_RS12065 d770a0b8f896b3bbccbd34c785e49026 366 Gene3D G3DSA:2.160.10.10 104 172 3.9E-47 T 23-04-2016 RD1_RS12065 d770a0b8f896b3bbccbd34c785e49026 366 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 25 93 2.7E-6 T 23-04-2016 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 UniPathway: UPA00973 RD1_RS12065 d770a0b8f896b3bbccbd34c785e49026 366 SUPERFAMILY SSF51161 35 334 5.0E-71 T 23-04-2016 IPR011004 Trimeric LpxA-like RD1_RS12065 d770a0b8f896b3bbccbd34c785e49026 366 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RD1_RS17810 f599750d89a651f3a1e5122548dc88e2 88 Pfam PF03937 Flavinator of succinate dehydrogenase 10 75 1.1E-23 T 23-04-2016 IPR005631 Flavinator of succinate dehydrogenase RD1_RS17810 f599750d89a651f3a1e5122548dc88e2 88 SUPERFAMILY SSF109910 4 74 1.31E-22 T 23-04-2016 IPR005631 Flavinator of succinate dehydrogenase RD1_RS17810 f599750d89a651f3a1e5122548dc88e2 88 PANTHER PTHR12469:SF2 6 73 3.7E-22 T 23-04-2016 RD1_RS17810 f599750d89a651f3a1e5122548dc88e2 88 Gene3D G3DSA:1.10.150.250 2 81 9.8E-28 T 23-04-2016 IPR005631 Flavinator of succinate dehydrogenase RD1_RS17810 f599750d89a651f3a1e5122548dc88e2 88 PANTHER PTHR12469 6 73 3.7E-22 T 23-04-2016 RD1_RS00395 84ec28b4d59a6be81cebb34b774157af 306 PIRSF PIRSF035875 4 295 1.5E-62 T 23-04-2016 IPR017039 Virulence factor BrkB RD1_RS00395 84ec28b4d59a6be81cebb34b774157af 306 PANTHER PTHR30213 30 278 9.5E-49 T 23-04-2016 RD1_RS00395 84ec28b4d59a6be81cebb34b774157af 306 Pfam PF03631 Virulence factor BrkB 24 276 5.6E-60 T 23-04-2016 IPR017039 Virulence factor BrkB RD1_RS00395 84ec28b4d59a6be81cebb34b774157af 306 PANTHER PTHR30213:SF2 30 278 9.5E-49 T 23-04-2016 RD1_RS00395 84ec28b4d59a6be81cebb34b774157af 306 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 23 274 9.0E-31 T 23-04-2016 IPR017039 Virulence factor BrkB RD1_RS15770 b1be97e49eabfdddc0947bf4eaf9e13e 215 Gene3D G3DSA:3.40.50.150 24 204 3.4E-13 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS15770 b1be97e49eabfdddc0947bf4eaf9e13e 215 PANTHER PTHR20974 16 214 1.2E-51 T 23-04-2016 IPR010342 Protein of unknown function DUF938 RD1_RS15770 b1be97e49eabfdddc0947bf4eaf9e13e 215 Pfam PF06080 Protein of unknown function (DUF938) 21 211 2.2E-42 T 23-04-2016 IPR010342 Protein of unknown function DUF938 RD1_RS15770 b1be97e49eabfdddc0947bf4eaf9e13e 215 SUPERFAMILY SSF53335 22 210 9.85E-24 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS01890 6b43004e6dd68343c86314da1e763d1a 408 SUPERFAMILY SSF53335 53 399 6.51E-50 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS01890 6b43004e6dd68343c86314da1e763d1a 408 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 307 398 4.6E-10 T 23-04-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 RD1_RS01890 6b43004e6dd68343c86314da1e763d1a 408 Gene3D G3DSA:3.40.50.150 226 403 8.9E-34 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS01890 6b43004e6dd68343c86314da1e763d1a 408 PANTHER PTHR11061:SF30 1 403 1.5E-54 T 23-04-2016 RD1_RS01890 6b43004e6dd68343c86314da1e763d1a 408 Gene3D G3DSA:2.40.50.140 3 64 4.3E-8 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS01890 6b43004e6dd68343c86314da1e763d1a 408 PANTHER PTHR11061 1 403 1.5E-54 T 23-04-2016 RD1_RS01890 6b43004e6dd68343c86314da1e763d1a 408 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 336 366 - T 23-04-2016 IPR030390 RNA methyltransferase TrmA, active site RD1_RS05645 19cd046d5f7582e7d8875b59b626b44e 949 Gene3D G3DSA:3.40.640.10 495 736 3.2E-35 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS05645 19cd046d5f7582e7d8875b59b626b44e 949 Gene3D G3DSA:3.40.640.10 88 301 6.4E-12 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS05645 19cd046d5f7582e7d8875b59b626b44e 949 SUPERFAMILY SSF53383 917 940 4.64E-97 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS05645 19cd046d5f7582e7d8875b59b626b44e 949 SUPERFAMILY SSF53383 468 875 4.64E-97 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS05645 19cd046d5f7582e7d8875b59b626b44e 949 Pfam PF02347 Glycine cleavage system P-protein 16 439 2.8E-177 T 23-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 RD1_RS05645 19cd046d5f7582e7d8875b59b626b44e 949 Pfam PF02347 Glycine cleavage system P-protein 620 728 2.6E-7 T 23-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 RD1_RS05645 19cd046d5f7582e7d8875b59b626b44e 949 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 17 938 0.0 T 23-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 RD1_RS05645 19cd046d5f7582e7d8875b59b626b44e 949 PANTHER PTHR11773:SF1 16 949 0.0 T 23-04-2016 RD1_RS05645 19cd046d5f7582e7d8875b59b626b44e 949 SUPERFAMILY SSF53383 17 438 2.67E-105 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS05645 19cd046d5f7582e7d8875b59b626b44e 949 PANTHER PTHR11773 16 949 0.0 T 23-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 RD1_RS05645 19cd046d5f7582e7d8875b59b626b44e 949 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 8 944 24.98 T 23-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 Pfam PF00873 AcrB/AcrD/AcrF family 4 1035 2.6E-204 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 PANTHER PTHR32063 1 1050 2.0E-245 T 23-04-2016 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 Gene3D G3DSA:3.30.70.1430 42 139 6.2E-23 T 23-04-2016 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 Gene3D G3DSA:1.20.1640.10 303 504 4.1E-54 T 23-04-2016 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 SUPERFAMILY SSF82866 295 496 2.09E-42 T 23-04-2016 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 Gene3D G3DSA:3.30.2090.10 184 271 2.2E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 Gene3D G3DSA:3.30.2090.10 720 807 4.6E-9 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 1.1E-44 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.1E-44 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 1.1E-44 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 PRINTS PR00702 Acriflavin resistance protein family signature 392 416 1.1E-44 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.1E-44 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 PRINTS PR00702 Acriflavin resistance protein family signature 364 385 1.1E-44 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 PRINTS PR00702 Acriflavin resistance protein family signature 337 360 1.1E-44 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 SUPERFAMILY SSF82714 184 271 3.4E-13 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 SUPERFAMILY SSF82714 720 807 2.35E-10 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 SUPERFAMILY SSF82866 808 1038 4.19E-47 T 23-04-2016 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 SUPERFAMILY SSF82693 273 331 5.49E-16 T 23-04-2016 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 SUPERFAMILY SSF82693 139 183 5.49E-16 T 23-04-2016 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 Gene3D G3DSA:1.10.3850.10 813 1038 1.1E-56 T 23-04-2016 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 Gene3D G3DSA:3.30.70.1320 275 302 3.2E-14 T 23-04-2016 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 Gene3D G3DSA:3.30.70.1320 144 180 3.2E-14 T 23-04-2016 RD1_RS06190 f5bc3299e4017cc42635876817ddf989 1054 SUPERFAMILY SSF82693 41 131 1.73E-19 T 23-04-2016 RD1_RS10625 ecb1e4e6c91c0a2e8ee8da934c824e39 462 Gene3D G3DSA:2.60.40.420 341 461 1.0E-37 T 23-04-2016 IPR008972 Cupredoxin RD1_RS10625 ecb1e4e6c91c0a2e8ee8da934c824e39 462 Pfam PF07732 Multicopper oxidase 41 152 1.3E-32 T 23-04-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 RD1_RS10625 ecb1e4e6c91c0a2e8ee8da934c824e39 462 PANTHER PTHR11709 50 461 2.2E-74 T 23-04-2016 RD1_RS10625 ecb1e4e6c91c0a2e8ee8da934c824e39 462 SUPERFAMILY SSF49503 33 153 9.51E-31 T 23-04-2016 IPR008972 Cupredoxin RD1_RS10625 ecb1e4e6c91c0a2e8ee8da934c824e39 462 SUPERFAMILY SSF49503 346 461 6.57E-34 T 23-04-2016 IPR008972 Cupredoxin RD1_RS10625 ecb1e4e6c91c0a2e8ee8da934c824e39 462 Gene3D G3DSA:2.60.40.420 151 275 6.5E-22 T 23-04-2016 IPR008972 Cupredoxin RD1_RS10625 ecb1e4e6c91c0a2e8ee8da934c824e39 462 ProSitePatterns PS00080 Multicopper oxidases signature 2. 444 455 - T 23-04-2016 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 RD1_RS10625 ecb1e4e6c91c0a2e8ee8da934c824e39 462 Pfam PF07731 Multicopper oxidase 359 460 3.7E-26 T 23-04-2016 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 RD1_RS10625 ecb1e4e6c91c0a2e8ee8da934c824e39 462 Gene3D G3DSA:2.60.40.420 20 150 1.0E-28 T 23-04-2016 IPR008972 Cupredoxin RD1_RS10625 ecb1e4e6c91c0a2e8ee8da934c824e39 462 PANTHER PTHR11709:SF33 50 461 2.2E-74 T 23-04-2016 RD1_RS10625 ecb1e4e6c91c0a2e8ee8da934c824e39 462 SUPERFAMILY SSF49503 161 270 2.44E-15 T 23-04-2016 IPR008972 Cupredoxin RD1_RS10625 ecb1e4e6c91c0a2e8ee8da934c824e39 462 Pfam PF00394 Multicopper oxidase 163 271 1.6E-5 T 23-04-2016 IPR001117 Multicopper oxidase, type 1 GO:0016491|GO:0055114 RD1_RS01530 18324072d5c79d0d971f33c37e09f8d6 424 TIGRFAM TIGR01499 folC: bifunctional protein FolC 25 421 5.2E-111 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RD1_RS01530 18324072d5c79d0d971f33c37e09f8d6 424 SUPERFAMILY SSF53623 9 273 4.46E-87 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS01530 18324072d5c79d0d971f33c37e09f8d6 424 PANTHER PTHR11136 9 422 9.3E-109 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RD1_RS01530 18324072d5c79d0d971f33c37e09f8d6 424 SUPERFAMILY SSF53244 284 421 1.97E-26 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RD1_RS01530 18324072d5c79d0d971f33c37e09f8d6 424 Gene3D G3DSA:3.90.190.20 286 422 1.6E-28 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RD1_RS01530 18324072d5c79d0d971f33c37e09f8d6 424 Gene3D G3DSA:3.40.1190.10 10 285 4.3E-92 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS01530 18324072d5c79d0d971f33c37e09f8d6 424 Pfam PF08245 Mur ligase middle domain 48 264 7.6E-10 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS01530 18324072d5c79d0d971f33c37e09f8d6 424 PANTHER PTHR11136:SF0 9 422 9.3E-109 T 23-04-2016 RD1_RS01530 18324072d5c79d0d971f33c37e09f8d6 424 PIRSF PIRSF001563 1 423 2.0E-107 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RD1_RS01530 18324072d5c79d0d971f33c37e09f8d6 424 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 138 153 - T 23-04-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 Gene3D G3DSA:3.30.70.20 138 200 4.4E-14 T 23-04-2016 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 229 280 1.5E-17 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 PANTHER PTHR11615:SF112 225 921 5.5E-214 T 23-04-2016 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 PANTHER PTHR11615:SF112 6 56 5.5E-214 T 23-04-2016 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 Pfam PF00384 Molybdopterin oxidoreductase 283 722 5.8E-86 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 SUPERFAMILY SSF50692 774 917 1.09E-43 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 SUPERFAMILY SSF54292 5 126 2.47E-31 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 Gene3D G3DSA:3.40.50.740 557 775 3.4E-91 T 23-04-2016 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 Gene3D G3DSA:3.40.50.740 283 373 3.4E-91 T 23-04-2016 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 Gene3D G3DSA:2.20.25.90 237 281 7.3E-23 T 23-04-2016 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 82 2.2E-19 T 23-04-2016 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 SUPERFAMILY SSF54862 136 216 3.35E-16 T 23-04-2016 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 668 685 - T 23-04-2016 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 Pfam PF12838 4Fe-4S dicluster domain 150 208 3.4E-6 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 Gene3D G3DSA:3.10.20.30 5 63 1.7E-8 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 SMART SM00926 227 280 2.5E-18 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 232 249 - T 23-04-2016 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 SUPERFAMILY SSF53706 229 760 2.49E-196 T 23-04-2016 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 Pfam PF01568 Molydopterin dinucleotide binding domain 808 911 7.6E-27 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 PANTHER PTHR11615 225 921 5.5E-214 T 23-04-2016 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 PANTHER PTHR11615 6 56 5.5E-214 T 23-04-2016 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 Gene3D G3DSA:2.40.40.20 776 917 3.6E-42 T 23-04-2016 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 Gene3D G3DSA:3.40.228.10 374 556 3.3E-65 T 23-04-2016 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 Gene3D G3DSA:3.30.70.20 201 236 2.7E-5 T 23-04-2016 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 PIRSF PIRSF036643 1 925 0.0 T 23-04-2016 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 194 205 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 SMART SM00929 88 126 1.5E-4 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RD1_RS19375 b63ca94c1d0181a382568d77ecf0b301 925 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 233 916 9.6E-227 T 23-04-2016 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 RD1_RS07975 bfeeff17acffef7e110803006e863fb5 307 PANTHER PTHR30193 6 306 2.7E-63 T 23-04-2016 RD1_RS07975 bfeeff17acffef7e110803006e863fb5 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 302 2.7E-10 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS07975 bfeeff17acffef7e110803006e863fb5 307 PANTHER PTHR30193:SF6 6 306 2.7E-63 T 23-04-2016 RD1_RS07975 bfeeff17acffef7e110803006e863fb5 307 SUPERFAMILY SSF161098 53 289 9.55E-48 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS07975 bfeeff17acffef7e110803006e863fb5 307 Gene3D G3DSA:1.10.3720.10 66 298 2.1E-51 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04550 9ba99aa15d00db764d831efbc4da592f 697 Pfam PF03880 DbpA RNA binding domain 447 506 7.3E-15 T 23-04-2016 IPR005580 DbpA, RNA-binding domain RD1_RS04550 9ba99aa15d00db764d831efbc4da592f 697 Gene3D G3DSA:3.40.50.300 206 353 4.3E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04550 9ba99aa15d00db764d831efbc4da592f 697 Pfam PF00270 DEAD/DEAH box helicase 18 190 2.0E-40 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RD1_RS04550 9ba99aa15d00db764d831efbc4da592f 697 Pfam PF00271 Helicase conserved C-terminal domain 229 333 4.6E-25 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS04550 9ba99aa15d00db764d831efbc4da592f 697 PANTHER PTHR24031 5 345 3.0E-131 T 23-04-2016 RD1_RS04550 9ba99aa15d00db764d831efbc4da592f 697 Gene3D G3DSA:3.40.50.300 3 205 1.3E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04550 9ba99aa15d00db764d831efbc4da592f 697 SUPERFAMILY SSF52540 69 344 6.97E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04550 9ba99aa15d00db764d831efbc4da592f 697 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 147 155 - T 23-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RD1_RS04550 9ba99aa15d00db764d831efbc4da592f 697 SMART SM00490 252 333 8.9E-28 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS04550 9ba99aa15d00db764d831efbc4da592f 697 SMART SM00487 13 216 1.1E-47 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD1_RS04550 9ba99aa15d00db764d831efbc4da592f 697 PANTHER PTHR24031:SF145 5 345 3.0E-131 T 23-04-2016 RD1_RS18315 08253e3d155f5424ad303dc67c01cdf4 344 PANTHER PTHR30477 1 114 9.3E-49 T 23-04-2016 RD1_RS18315 08253e3d155f5424ad303dc67c01cdf4 344 PANTHER PTHR30477 164 323 9.3E-49 T 23-04-2016 RD1_RS18315 08253e3d155f5424ad303dc67c01cdf4 344 PANTHER PTHR30477:SF1 1 114 9.3E-49 T 23-04-2016 RD1_RS18315 08253e3d155f5424ad303dc67c01cdf4 344 PANTHER PTHR30477:SF1 164 323 9.3E-49 T 23-04-2016 RD1_RS18315 08253e3d155f5424ad303dc67c01cdf4 344 SUPERFAMILY SSF53807 19 107 2.79E-65 T 23-04-2016 RD1_RS18315 08253e3d155f5424ad303dc67c01cdf4 344 SUPERFAMILY SSF53807 169 343 2.79E-65 T 23-04-2016 RD1_RS18315 08253e3d155f5424ad303dc67c01cdf4 344 Gene3D G3DSA:3.40.50.1980 8 105 7.7E-37 T 23-04-2016 RD1_RS18315 08253e3d155f5424ad303dc67c01cdf4 344 Gene3D G3DSA:3.40.50.1980 156 215 7.7E-37 T 23-04-2016 RD1_RS18315 08253e3d155f5424ad303dc67c01cdf4 344 Pfam PF01297 Zinc-uptake complex component A periplasmic 26 342 1.9E-53 T 23-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 RD1_RS18315 08253e3d155f5424ad303dc67c01cdf4 344 Gene3D G3DSA:3.40.50.1980 235 344 2.8E-21 T 23-04-2016 RD1_RS11855 97764a152872e439faaab9bc2df8a9ca 285 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 222 232 - T 23-04-2016 IPR017953 Carbohydrate kinase, predicted, conserved site RD1_RS11855 97764a152872e439faaab9bc2df8a9ca 285 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 17 278 2.7E-50 T 23-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 RD1_RS11855 97764a152872e439faaab9bc2df8a9ca 285 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 6 282 18.81 T 23-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 RD1_RS11855 97764a152872e439faaab9bc2df8a9ca 285 Gene3D G3DSA:3.40.1190.20 18 280 1.9E-71 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS11855 97764a152872e439faaab9bc2df8a9ca 285 SUPERFAMILY SSF53613 16 280 4.52E-59 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS11855 97764a152872e439faaab9bc2df8a9ca 285 Pfam PF01256 Carbohydrate kinase 30 259 2.5E-50 T 23-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 RD1_RS11855 97764a152872e439faaab9bc2df8a9ca 285 PANTHER PTHR12592:SF0 22 285 2.7E-50 T 23-04-2016 RD1_RS11855 97764a152872e439faaab9bc2df8a9ca 285 PANTHER PTHR12592 22 285 2.7E-50 T 23-04-2016 RD1_RS05840 4e89db4b3cd55a5d228a161578259d33 526 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 501 525 0.0053 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RD1_RS05840 4e89db4b3cd55a5d228a161578259d33 526 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 260 2.5E-6 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RD1_RS05840 4e89db4b3cd55a5d228a161578259d33 526 SMART SM00382 308 499 4.5E-19 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS05840 4e89db4b3cd55a5d228a161578259d33 526 SMART SM00382 33 231 1.2E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS05840 4e89db4b3cd55a5d228a161578259d33 526 ProSitePatterns PS00211 ABC transporters family signature. 422 436 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS05840 4e89db4b3cd55a5d228a161578259d33 526 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS05840 4e89db4b3cd55a5d228a161578259d33 526 PANTHER PTHR24220:SF574 6 407 3.9E-177 T 23-04-2016 RD1_RS05840 4e89db4b3cd55a5d228a161578259d33 526 SUPERFAMILY SSF52540 4 253 1.11E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05840 4e89db4b3cd55a5d228a161578259d33 526 Gene3D G3DSA:3.40.50.300 3 256 1.6E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05840 4e89db4b3cd55a5d228a161578259d33 526 Pfam PF00005 ABC transporter 300 450 2.8E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS05840 4e89db4b3cd55a5d228a161578259d33 526 Pfam PF00005 ABC transporter 25 181 2.0E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS05840 4e89db4b3cd55a5d228a161578259d33 526 Gene3D G3DSA:3.40.50.300 276 523 1.4E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05840 4e89db4b3cd55a5d228a161578259d33 526 SUPERFAMILY SSF52540 276 521 1.17E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05840 4e89db4b3cd55a5d228a161578259d33 526 PANTHER PTHR24220 6 407 3.9E-177 T 23-04-2016 RD1_RS18055 6cad71073e44bddda5e7413be22a3cb8 338 Gene3D G3DSA:3.40.50.2300 176 310 3.8E-41 T 23-04-2016 RD1_RS18055 6cad71073e44bddda5e7413be22a3cb8 338 SUPERFAMILY SSF47413 2 61 1.69E-15 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS18055 6cad71073e44bddda5e7413be22a3cb8 338 SMART SM00354 3 73 7.7E-21 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS18055 6cad71073e44bddda5e7413be22a3cb8 338 Gene3D G3DSA:3.40.50.2300 56 175 2.4E-38 T 23-04-2016 RD1_RS18055 6cad71073e44bddda5e7413be22a3cb8 338 Pfam PF13377 Periplasmic binding protein-like domain 171 329 1.6E-30 T 23-04-2016 RD1_RS18055 6cad71073e44bddda5e7413be22a3cb8 338 Gene3D G3DSA:1.10.260.40 4 55 2.6E-21 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS18055 6cad71073e44bddda5e7413be22a3cb8 338 SUPERFAMILY SSF53822 62 333 6.09E-63 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS18055 6cad71073e44bddda5e7413be22a3cb8 338 PANTHER PTHR30146 3 335 3.0E-100 T 23-04-2016 RD1_RS18055 6cad71073e44bddda5e7413be22a3cb8 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 50 1.5E-13 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS06665 cb5fc9c69b29cb57f3a20f019f104ec9 441 Gene3D G3DSA:1.10.3710.10 345 438 1.2E-27 T 23-04-2016 RD1_RS06665 cb5fc9c69b29cb57f3a20f019f104ec9 441 PANTHER PTHR13779 15 439 2.8E-160 T 23-04-2016 RD1_RS06665 cb5fc9c69b29cb57f3a20f019f104ec9 441 Gene3D G3DSA:1.10.8.60 160 233 8.4E-8 T 23-04-2016 RD1_RS06665 cb5fc9c69b29cb57f3a20f019f104ec9 441 Gene3D G3DSA:3.40.50.300 17 159 1.6E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06665 cb5fc9c69b29cb57f3a20f019f104ec9 441 Pfam PF12002 MgsA AAA+ ATPase C terminal 264 428 2.4E-62 T 23-04-2016 IPR021886 MgsA AAA+ ATPase C-terminal RD1_RS06665 cb5fc9c69b29cb57f3a20f019f104ec9 441 SUPERFAMILY SSF52540 18 238 9.77E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06665 cb5fc9c69b29cb57f3a20f019f104ec9 441 Gene3D G3DSA:1.20.272.10 245 343 1.9E-40 T 23-04-2016 RD1_RS06665 cb5fc9c69b29cb57f3a20f019f104ec9 441 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 20 143 1.4E-15 T 23-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 RD1_RS06665 cb5fc9c69b29cb57f3a20f019f104ec9 441 SUPERFAMILY SSF48019 249 433 2.15E-68 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RD1_RS06665 cb5fc9c69b29cb57f3a20f019f104ec9 441 PANTHER PTHR13779:SF7 15 439 2.8E-160 T 23-04-2016 RD1_RS06665 cb5fc9c69b29cb57f3a20f019f104ec9 441 SMART SM00382 55 172 6.9E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS06665 cb5fc9c69b29cb57f3a20f019f104ec9 441 Pfam PF16193 AAA C-terminal domain 190 263 2.1E-16 T 23-04-2016 IPR032423 AAA ATPase, C-terminal domain RD1_RS18870 94c5e7558c9381a1cbf58d37a9b9a563 577 SUPERFAMILY SSF53850 62 514 8.31E-57 T 23-04-2016 RD1_RS18870 94c5e7558c9381a1cbf58d37a9b9a563 577 PANTHER PTHR30061 82 538 4.1E-18 T 23-04-2016 RD1_RS18870 94c5e7558c9381a1cbf58d37a9b9a563 577 Gene3D G3DSA:3.40.190.10 80 193 7.6E-12 T 23-04-2016 RD1_RS18870 94c5e7558c9381a1cbf58d37a9b9a563 577 Pfam PF01547 Bacterial extracellular solute-binding protein 80 425 1.1E-15 T 23-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 RD1_RS18870 94c5e7558c9381a1cbf58d37a9b9a563 577 PIRSF PIRSF035859 1 577 4.5E-260 T 23-04-2016 IPR014597 ABC transporter, periplasmic substrate-binding protein GO:0005215 RD1_RS18870 94c5e7558c9381a1cbf58d37a9b9a563 577 Gene3D G3DSA:3.40.190.10 194 447 2.4E-41 T 23-04-2016 RD1_RS10860 617bcdfcd0943d500bf7b4fed4fa04df 163 Pfam PF01047 MarR family 54 110 1.1E-10 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS10860 617bcdfcd0943d500bf7b4fed4fa04df 163 PANTHER PTHR33164 12 162 6.8E-22 T 23-04-2016 RD1_RS10860 617bcdfcd0943d500bf7b4fed4fa04df 163 ProSitePatterns PS01117 MarR-type HTH domain signature. 86 120 - T 23-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site RD1_RS10860 617bcdfcd0943d500bf7b4fed4fa04df 163 SUPERFAMILY SSF46785 19 159 6.07E-30 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS10860 617bcdfcd0943d500bf7b4fed4fa04df 163 SMART SM00347 47 147 3.6E-21 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS10860 617bcdfcd0943d500bf7b4fed4fa04df 163 PRINTS PR00598 Bacterial regulatory protein MarR family signature 107 123 1.2E-8 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS10860 617bcdfcd0943d500bf7b4fed4fa04df 163 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 87 1.2E-8 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS10860 617bcdfcd0943d500bf7b4fed4fa04df 163 PRINTS PR00598 Bacterial regulatory protein MarR family signature 137 157 1.2E-8 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS10860 617bcdfcd0943d500bf7b4fed4fa04df 163 Gene3D G3DSA:1.10.10.10 15 160 5.1E-34 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS02415 1315b0e4bc6e3924f3ed209a26f0a028 645 Pfam PF13435 Cytochrome c554 and c-prime 162 200 6.6E-6 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 RD1_RS02415 1315b0e4bc6e3924f3ed209a26f0a028 645 Pfam PF13435 Cytochrome c554 and c-prime 33 57 0.0012 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 RD1_RS02415 1315b0e4bc6e3924f3ed209a26f0a028 645 Gene3D G3DSA:1.25.10.10 460 539 2.7E-7 T 23-04-2016 IPR011989 Armadillo-like helical RD1_RS02415 1315b0e4bc6e3924f3ed209a26f0a028 645 SUPERFAMILY SSF48452 543 624 8.44E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS02415 1315b0e4bc6e3924f3ed209a26f0a028 645 Gene3D G3DSA:1.25.40.10 543 628 4.9E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS02415 1315b0e4bc6e3924f3ed209a26f0a028 645 Pfam PF13646 HEAT repeats 459 529 2.7E-7 T 23-04-2016 RD1_RS02415 1315b0e4bc6e3924f3ed209a26f0a028 645 SUPERFAMILY SSF48695 94 556 2.13E-67 T 23-04-2016 IPR011031 Multihaem cytochrome RD1_RS02415 1315b0e4bc6e3924f3ed209a26f0a028 645 SUPERFAMILY SSF48695 27 49 2.13E-67 T 23-04-2016 IPR011031 Multihaem cytochrome RD1_RS02415 1315b0e4bc6e3924f3ed209a26f0a028 645 Gene3D G3DSA:1.10.710.10 289 404 1.6E-42 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 RD1_RS02415 1315b0e4bc6e3924f3ed209a26f0a028 645 Gene3D G3DSA:1.10.710.10 26 69 1.6E-42 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 RD1_RS02415 1315b0e4bc6e3924f3ed209a26f0a028 645 Gene3D G3DSA:1.10.710.10 153 249 1.6E-42 T 23-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 RD1_RS15360 8021f0dcebf72b69c7135c4095fc1b85 561 PANTHER PTHR11689 14 457 1.3E-67 T 23-04-2016 RD1_RS15360 8021f0dcebf72b69c7135c4095fc1b85 561 PANTHER PTHR11689:SF14 14 457 1.3E-67 T 23-04-2016 RD1_RS15360 8021f0dcebf72b69c7135c4095fc1b85 561 SUPERFAMILY SSF81340 20 459 2.22E-95 T 23-04-2016 IPR014743 Chloride channel, core GO:0005216|GO:0055085 RD1_RS15360 8021f0dcebf72b69c7135c4095fc1b85 561 PRINTS PR00762 Chloride channel signature 136 155 9.4E-25 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 RD1_RS15360 8021f0dcebf72b69c7135c4095fc1b85 561 PRINTS PR00762 Chloride channel signature 408 427 9.4E-25 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 RD1_RS15360 8021f0dcebf72b69c7135c4095fc1b85 561 PRINTS PR00762 Chloride channel signature 187 206 9.4E-25 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 RD1_RS15360 8021f0dcebf72b69c7135c4095fc1b85 561 PRINTS PR00762 Chloride channel signature 390 406 9.4E-25 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 RD1_RS15360 8021f0dcebf72b69c7135c4095fc1b85 561 PRINTS PR00762 Chloride channel signature 355 375 9.4E-25 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 RD1_RS15360 8021f0dcebf72b69c7135c4095fc1b85 561 Pfam PF00654 Voltage gated chloride channel 94 439 4.3E-72 T 23-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 RD1_RS15360 8021f0dcebf72b69c7135c4095fc1b85 561 Gene3D G3DSA:1.10.3080.10 30 458 1.1E-78 T 23-04-2016 IPR014743 Chloride channel, core GO:0005216|GO:0055085 RD1_RS17355 47f5c785fc1c898954abc4141d265a50 339 Gene3D G3DSA:3.30.360.10 137 338 2.7E-22 T 23-04-2016 RD1_RS17355 47f5c785fc1c898954abc4141d265a50 339 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 118 1.0E-16 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RD1_RS17355 47f5c785fc1c898954abc4141d265a50 339 Gene3D G3DSA:3.40.50.720 1 136 6.7E-29 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17355 47f5c785fc1c898954abc4141d265a50 339 PANTHER PTHR22604:SF119 6 338 3.4E-65 T 23-04-2016 RD1_RS17355 47f5c785fc1c898954abc4141d265a50 339 SUPERFAMILY SSF55347 126 264 2.49E-18 T 23-04-2016 RD1_RS17355 47f5c785fc1c898954abc4141d265a50 339 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 133 212 5.1E-5 T 23-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS17355 47f5c785fc1c898954abc4141d265a50 339 PANTHER PTHR22604 6 338 3.4E-65 T 23-04-2016 RD1_RS17355 47f5c785fc1c898954abc4141d265a50 339 SUPERFAMILY SSF51735 2 146 2.72E-30 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 PANTHER PTHR32071:SF17 1 460 4.0E-182 T 23-04-2016 RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 Gene3D G3DSA:1.10.10.60 402 448 4.5E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 413 430 8.0E-5 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 430 450 8.0E-5 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 Gene3D G3DSA:1.10.8.60 310 380 5.2E-21 T 23-04-2016 RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 SUPERFAMILY SSF52172 3 185 8.11E-41 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 Gene3D G3DSA:3.40.50.2300 2 128 5.4E-35 T 23-04-2016 RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 SUPERFAMILY SSF52540 140 370 1.38E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 SUPERFAMILY SSF46689 350 449 3.58E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 223 238 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 Pfam PF00072 Response regulator receiver domain 4 115 3.1E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 SMART SM00382 161 300 1.6E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 Pfam PF02954 Bacterial regulatory protein, Fis family 407 445 2.7E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 Gene3D G3DSA:3.40.50.300 139 308 1.6E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 SMART SM00448 2 115 1.6E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 PANTHER PTHR32071 1 460 4.0E-182 T 23-04-2016 RD1_RS12670 1933c26af0efbba13b850f3760eb90dc 470 Pfam PF00158 Sigma-54 interaction domain 141 303 7.2E-47 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RD1_RS18395 d9f7ff99cab00daad65fd8e96c843813 123 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 1 123 20.856 T 23-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS18395 d9f7ff99cab00daad65fd8e96c843813 123 Gene3D G3DSA:3.30.1390.10 52 122 1.8E-30 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RD1_RS18395 d9f7ff99cab00daad65fd8e96c843813 123 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 58 122 1.9E-27 T 23-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 RD1_RS18395 d9f7ff99cab00daad65fd8e96c843813 123 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 59 122 1.0E-24 T 23-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 RD1_RS18395 d9f7ff99cab00daad65fd8e96c843813 123 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 51 8.8E-13 T 23-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS18395 d9f7ff99cab00daad65fd8e96c843813 123 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 122 2.0E-34 T 23-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS18395 d9f7ff99cab00daad65fd8e96c843813 123 Gene3D G3DSA:1.20.5.710 8 51 3.8E-7 T 23-04-2016 RD1_RS18395 d9f7ff99cab00daad65fd8e96c843813 123 SUPERFAMILY SSF54736 53 122 4.71E-24 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RD1_RS18395 d9f7ff99cab00daad65fd8e96c843813 123 SUPERFAMILY SSF48300 3 60 1.83E-12 T 23-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS19175 0c6143932457e8533338c6a59257ad43 360 PANTHER PTHR30472:SF3 10 359 9.7E-134 T 23-04-2016 RD1_RS19175 0c6143932457e8533338c6a59257ad43 360 Gene3D G3DSA:1.10.3470.10 21 355 1.5E-106 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RD1_RS19175 0c6143932457e8533338c6a59257ad43 360 Pfam PF01032 FecCD transport family 34 353 1.4E-93 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RD1_RS19175 0c6143932457e8533338c6a59257ad43 360 SUPERFAMILY SSF81345 17 354 2.48E-82 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RD1_RS19175 0c6143932457e8533338c6a59257ad43 360 PANTHER PTHR30472 10 359 9.7E-134 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RD1_RS15450 73dbd0c2e1363b4001c7034d8efcb3ee 593 SUPERFAMILY SSF56519 87 225 4.45E-33 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RD1_RS15450 73dbd0c2e1363b4001c7034d8efcb3ee 593 Gene3D G3DSA:3.90.1310.10 157 223 5.7E-13 T 23-04-2016 RD1_RS15450 73dbd0c2e1363b4001c7034d8efcb3ee 593 PANTHER PTHR30627 35 579 7.2E-128 T 23-04-2016 RD1_RS15450 73dbd0c2e1363b4001c7034d8efcb3ee 593 SUPERFAMILY SSF56601 235 576 6.18E-87 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS15450 73dbd0c2e1363b4001c7034d8efcb3ee 593 Pfam PF03717 Penicillin-binding Protein dimerisation domain 87 223 2.9E-18 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RD1_RS15450 73dbd0c2e1363b4001c7034d8efcb3ee 593 PANTHER PTHR30627:SF1 35 579 7.2E-128 T 23-04-2016 RD1_RS15450 73dbd0c2e1363b4001c7034d8efcb3ee 593 Pfam PF00905 Penicillin binding protein transpeptidase domain 262 544 1.1E-59 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RD1_RS15450 73dbd0c2e1363b4001c7034d8efcb3ee 593 Gene3D G3DSA:3.40.710.10 235 571 4.9E-82 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS06370 3efef08c53035a8673156f3d4e04a06b 562 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 445 558 9.8E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS06370 3efef08c53035a8673156f3d4e04a06b 562 SUPERFAMILY SSF55874 388 562 6.16E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS06370 3efef08c53035a8673156f3d4e04a06b 562 Pfam PF00672 HAMP domain 255 327 1.9E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS06370 3efef08c53035a8673156f3d4e04a06b 562 Pfam PF13755 Sensor N-terminal transmembrane domain 35 110 3.0E-30 T 23-04-2016 IPR025908 Sensor N-terminal transmembrane domain RD1_RS06370 3efef08c53035a8673156f3d4e04a06b 562 SMART SM00388 333 398 4.9E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS06370 3efef08c53035a8673156f3d4e04a06b 562 Gene3D G3DSA:1.10.287.130 326 394 1.5E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS06370 3efef08c53035a8673156f3d4e04a06b 562 PRINTS PR00344 Bacterial sensor protein C-terminal signature 499 509 1.0E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS06370 3efef08c53035a8673156f3d4e04a06b 562 PRINTS PR00344 Bacterial sensor protein C-terminal signature 515 533 1.0E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS06370 3efef08c53035a8673156f3d4e04a06b 562 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 495 1.0E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS06370 3efef08c53035a8673156f3d4e04a06b 562 SMART SM00387 444 553 5.5E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS06370 3efef08c53035a8673156f3d4e04a06b 562 Gene3D G3DSA:3.30.565.10 403 562 1.0E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS06370 3efef08c53035a8673156f3d4e04a06b 562 Pfam PF00512 His Kinase A (phospho-acceptor) domain 335 397 1.3E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS06370 3efef08c53035a8673156f3d4e04a06b 562 SUPERFAMILY SSF47384 316 397 5.1E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS06370 3efef08c53035a8673156f3d4e04a06b 562 PANTHER PTHR24423 312 539 1.9E-58 T 23-04-2016 RD1_RS02265 98951f7c0b33c807ccdefa6b427b1b7a 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 5.9E-16 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS02265 98951f7c0b33c807ccdefa6b427b1b7a 332 SMART SM00354 2 72 6.2E-24 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS02265 98951f7c0b33c807ccdefa6b427b1b7a 332 SUPERFAMILY SSF53822 61 330 2.16E-52 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS02265 98951f7c0b33c807ccdefa6b427b1b7a 332 Gene3D G3DSA:1.10.260.40 3 54 7.6E-24 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS02265 98951f7c0b33c807ccdefa6b427b1b7a 332 Gene3D G3DSA:3.40.50.2300 176 309 1.5E-35 T 23-04-2016 RD1_RS02265 98951f7c0b33c807ccdefa6b427b1b7a 332 PANTHER PTHR30146 1 332 1.4E-82 T 23-04-2016 RD1_RS02265 98951f7c0b33c807ccdefa6b427b1b7a 332 Pfam PF13377 Periplasmic binding protein-like domain 170 327 5.2E-27 T 23-04-2016 RD1_RS02265 98951f7c0b33c807ccdefa6b427b1b7a 332 Gene3D G3DSA:3.40.50.2300 55 175 4.7E-31 T 23-04-2016 RD1_RS02265 98951f7c0b33c807ccdefa6b427b1b7a 332 SUPERFAMILY SSF47413 2 60 1.0E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS18660 62111f690e4a935b7f838bc116f7d0b0 243 Gene3D G3DSA:3.40.1280.10 10 242 2.0E-71 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RD1_RS18660 62111f690e4a935b7f838bc116f7d0b0 243 Pfam PF04452 RNA methyltransferase 25 236 2.9E-55 T 23-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS18660 62111f690e4a935b7f838bc116f7d0b0 243 PIRSF PIRSF015601 8 242 3.1E-52 T 23-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS18660 62111f690e4a935b7f838bc116f7d0b0 243 PANTHER PTHR30027 9 243 1.6E-53 T 23-04-2016 RD1_RS18660 62111f690e4a935b7f838bc116f7d0b0 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 19 241 2.7E-32 T 23-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS18660 62111f690e4a935b7f838bc116f7d0b0 243 SUPERFAMILY SSF75217 79 242 1.4E-44 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases RD1_RS18660 62111f690e4a935b7f838bc116f7d0b0 243 PANTHER PTHR30027:SF3 9 243 1.6E-53 T 23-04-2016 RD1_RS18660 62111f690e4a935b7f838bc116f7d0b0 243 SUPERFAMILY SSF88697 9 75 2.49E-16 T 23-04-2016 IPR015947 PUA-like domain RD1_RS12985 35ab461727e61e2e4923fceb176b46fe 249 SUPERFAMILY SSF52833 75 245 2.75E-40 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS12985 35ab461727e61e2e4923fceb176b46fe 249 PANTHER PTHR13887 20 248 2.6E-53 T 23-04-2016 RD1_RS12985 35ab461727e61e2e4923fceb176b46fe 249 Gene3D G3DSA:3.40.30.10 77 246 1.3E-42 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS12985 35ab461727e61e2e4923fceb176b46fe 249 PANTHER PTHR13887:SF25 20 248 2.6E-53 T 23-04-2016 RD1_RS12985 35ab461727e61e2e4923fceb176b46fe 249 Pfam PF01323 DSBA-like thioredoxin domain 98 241 2.5E-26 T 23-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 RD1_RS05310 b8e443c88e93ec4a5e09784ef420df95 228 SMART SM00448 4 115 7.1E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS05310 b8e443c88e93ec4a5e09784ef420df95 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 218 1.2E-19 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS05310 b8e443c88e93ec4a5e09784ef420df95 228 SUPERFAMILY SSF46894 132 219 3.68E-20 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RD1_RS05310 b8e443c88e93ec4a5e09784ef420df95 228 PANTHER PTHR26402 4 221 6.1E-60 T 23-04-2016 RD1_RS05310 b8e443c88e93ec4a5e09784ef420df95 228 Gene3D G3DSA:1.10.10.10 147 220 9.0E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS05310 b8e443c88e93ec4a5e09784ef420df95 228 SMART SM00862 143 218 2.2E-17 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS05310 b8e443c88e93ec4a5e09784ef420df95 228 Pfam PF00072 Response regulator receiver domain 7 115 3.9E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS05310 b8e443c88e93ec4a5e09784ef420df95 228 PANTHER PTHR26402:SF578 4 221 6.1E-60 T 23-04-2016 RD1_RS05310 b8e443c88e93ec4a5e09784ef420df95 228 SUPERFAMILY SSF52172 2 133 6.69E-32 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS05310 b8e443c88e93ec4a5e09784ef420df95 228 Gene3D G3DSA:3.40.50.2300 2 146 1.4E-31 T 23-04-2016 RD1_RS18100 0bb260244de60176033264407e933b5e 407 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 33 144 6.6E-36 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS18100 0bb260244de60176033264407e933b5e 407 SUPERFAMILY SSF56645 18 253 1.7E-75 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RD1_RS18100 0bb260244de60176033264407e933b5e 407 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 150 162 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RD1_RS18100 0bb260244de60176033264407e933b5e 407 Gene3D G3DSA:1.20.140.10 254 403 1.3E-36 T 23-04-2016 RD1_RS18100 0bb260244de60176033264407e933b5e 407 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 359 378 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RD1_RS18100 0bb260244de60176033264407e933b5e 407 PANTHER PTHR10909:SF307 19 406 2.6E-256 T 23-04-2016 RD1_RS18100 0bb260244de60176033264407e933b5e 407 Gene3D G3DSA:1.10.540.10 17 145 2.6E-41 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS18100 0bb260244de60176033264407e933b5e 407 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 254 399 2.5E-22 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS18100 0bb260244de60176033264407e933b5e 407 PANTHER PTHR10909 19 406 2.6E-256 T 23-04-2016 RD1_RS18100 0bb260244de60176033264407e933b5e 407 SUPERFAMILY SSF47203 257 404 5.32E-38 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS18100 0bb260244de60176033264407e933b5e 407 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 148 241 1.6E-19 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RD1_RS18100 0bb260244de60176033264407e933b5e 407 Gene3D G3DSA:2.40.110.10 147 252 1.2E-31 T 23-04-2016 RD1_RS05715 67e97e37967a25146b1e2c2e80dfb2fc 429 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 152 389 1.5E-39 T 23-04-2016 IPR010297 Protein of unknown function DUF900, hydrolase-like RD1_RS05715 67e97e37967a25146b1e2c2e80dfb2fc 429 Gene3D G3DSA:3.40.50.1820 166 388 4.6E-4 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS03185 426f033f80487372c6e17d7318af9187 442 PANTHER PTHR10742:SF299 18 427 2.1E-129 T 23-04-2016 RD1_RS03185 426f033f80487372c6e17d7318af9187 442 Pfam PF01593 Flavin containing amine oxidoreductase 30 310 8.5E-21 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RD1_RS03185 426f033f80487372c6e17d7318af9187 442 Gene3D G3DSA:3.50.50.60 216 317 6.5E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03185 426f033f80487372c6e17d7318af9187 442 Gene3D G3DSA:3.50.50.60 19 123 6.5E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03185 426f033f80487372c6e17d7318af9187 442 SUPERFAMILY SSF51905 400 431 6.91E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03185 426f033f80487372c6e17d7318af9187 442 SUPERFAMILY SSF51905 22 319 6.91E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03185 426f033f80487372c6e17d7318af9187 442 PANTHER PTHR10742 18 427 2.1E-129 T 23-04-2016 RD1_RS00900 c6ec028f7b10a7265ae0ea3601a1a0fb 387 Gene3D G3DSA:3.40.640.10 30 271 4.2E-46 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS00900 c6ec028f7b10a7265ae0ea3601a1a0fb 387 PANTHER PTHR21152:SF23 9 382 4.8E-174 T 23-04-2016 RD1_RS00900 c6ec028f7b10a7265ae0ea3601a1a0fb 387 PANTHER PTHR21152 9 382 4.8E-174 T 23-04-2016 RD1_RS00900 c6ec028f7b10a7265ae0ea3601a1a0fb 387 TIGRFAM TIGR01365 serC_2: phosphoserine aminotransferase 17 383 2.5E-183 T 23-04-2016 IPR006271 Phosphoserine aminotransferase, Methanosarcina-type GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 RD1_RS00900 c6ec028f7b10a7265ae0ea3601a1a0fb 387 SUPERFAMILY SSF53383 18 382 1.6E-78 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS00900 c6ec028f7b10a7265ae0ea3601a1a0fb 387 PIRSF PIRSF000525 10 385 1.3E-53 T 23-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 RD1_RS16790 56a52ef9445a5828048c57cc73cc803f 449 TIGRFAM TIGR01015 hmgA: homogentisate 1,2-dioxygenase 20 442 2.3E-189 T 23-04-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 RD1_RS16790 56a52ef9445a5828048c57cc73cc803f 449 SUPERFAMILY SSF51182 20 444 1.25E-154 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS16790 56a52ef9445a5828048c57cc73cc803f 449 Gene3D G3DSA:2.60.120.10 209 261 7.3E-6 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS16790 56a52ef9445a5828048c57cc73cc803f 449 Gene3D G3DSA:2.60.120.10 262 412 2.3E-59 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS16790 56a52ef9445a5828048c57cc73cc803f 449 Pfam PF04209 homogentisate 1,2-dioxygenase 21 442 1.0E-191 T 23-04-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 RD1_RS16790 56a52ef9445a5828048c57cc73cc803f 449 PANTHER PTHR11056:SF0 7 448 5.3E-213 T 23-04-2016 RD1_RS16790 56a52ef9445a5828048c57cc73cc803f 449 PANTHER PTHR11056 7 448 5.3E-213 T 23-04-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 RD1_RS18865 2f8983b45f1757a61c63625162af2f6e 354 SUPERFAMILY SSF52540 4 242 7.98E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18865 2f8983b45f1757a61c63625162af2f6e 354 PANTHER PTHR24220 4 246 2.2E-93 T 23-04-2016 RD1_RS18865 2f8983b45f1757a61c63625162af2f6e 354 SUPERFAMILY SSF50331 236 353 1.79E-19 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS18865 2f8983b45f1757a61c63625162af2f6e 354 Gene3D G3DSA:3.40.50.300 3 228 3.0E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18865 2f8983b45f1757a61c63625162af2f6e 354 PANTHER PTHR24220:SF282 4 246 2.2E-93 T 23-04-2016 RD1_RS18865 2f8983b45f1757a61c63625162af2f6e 354 SMART SM00382 27 212 7.8E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS18865 2f8983b45f1757a61c63625162af2f6e 354 Gene3D G3DSA:2.40.50.140 277 337 1.2E-9 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS18865 2f8983b45f1757a61c63625162af2f6e 354 Pfam PF00005 ABC transporter 19 160 4.0E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS04590 a1031cd632111b5e5c4019002b6557c3 216 PANTHER PTHR11751:SF436 16 102 3.8E-12 T 23-04-2016 RD1_RS04590 a1031cd632111b5e5c4019002b6557c3 216 Pfam PF07729 FCD domain 86 204 2.2E-17 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS04590 a1031cd632111b5e5c4019002b6557c3 216 SUPERFAMILY SSF46785 14 80 6.98E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04590 a1031cd632111b5e5c4019002b6557c3 216 PANTHER PTHR11751 16 102 3.8E-12 T 23-04-2016 RD1_RS04590 a1031cd632111b5e5c4019002b6557c3 216 Gene3D G3DSA:1.20.120.530 79 214 1.6E-19 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS04590 a1031cd632111b5e5c4019002b6557c3 216 Gene3D G3DSA:1.10.10.10 8 68 1.5E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04590 a1031cd632111b5e5c4019002b6557c3 216 SUPERFAMILY SSF48008 82 214 7.85E-17 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS04590 a1031cd632111b5e5c4019002b6557c3 216 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 68 7.4E-13 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS04590 a1031cd632111b5e5c4019002b6557c3 216 SMART SM00895 86 209 3.7E-11 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS08365 8f41f1e7e6e81327338cab1ed558ba4c 342 SUPERFAMILY SSF55174 16 106 4.88E-7 T 23-04-2016 RD1_RS08365 8f41f1e7e6e81327338cab1ed558ba4c 342 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 17 340 2.8E-81 T 23-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS08365 8f41f1e7e6e81327338cab1ed558ba4c 342 SMART SM00363 16 84 6.2E-4 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RD1_RS08365 8f41f1e7e6e81327338cab1ed558ba4c 342 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 140 154 - T 23-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS08365 8f41f1e7e6e81327338cab1ed558ba4c 342 PANTHER PTHR11079 5 186 3.2E-109 T 23-04-2016 RD1_RS08365 8f41f1e7e6e81327338cab1ed558ba4c 342 PANTHER PTHR11079 203 342 3.2E-109 T 23-04-2016 RD1_RS08365 8f41f1e7e6e81327338cab1ed558ba4c 342 Gene3D G3DSA:3.10.290.10 17 71 1.2E-8 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RD1_RS08365 8f41f1e7e6e81327338cab1ed558ba4c 342 Pfam PF00849 RNA pseudouridylate synthase 93 268 2.1E-31 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS08365 8f41f1e7e6e81327338cab1ed558ba4c 342 SUPERFAMILY SSF55120 78 340 3.5E-69 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS08365 8f41f1e7e6e81327338cab1ed558ba4c 342 PANTHER PTHR11079:SF73 5 186 3.2E-109 T 23-04-2016 RD1_RS08365 8f41f1e7e6e81327338cab1ed558ba4c 342 PANTHER PTHR11079:SF73 203 342 3.2E-109 T 23-04-2016 RD1_RS06030 1d5915c40168f2dc9f18434eda7cd880 127 Pfam PF01245 Ribosomal protein L19 3 115 1.3E-46 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06030 1d5915c40168f2dc9f18434eda7cd880 127 PRINTS PR00061 Ribosomal protein L19 signature 6 35 5.4E-28 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06030 1d5915c40168f2dc9f18434eda7cd880 127 PRINTS PR00061 Ribosomal protein L19 signature 91 116 5.4E-28 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06030 1d5915c40168f2dc9f18434eda7cd880 127 PRINTS PR00061 Ribosomal protein L19 signature 36 65 5.4E-28 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06030 1d5915c40168f2dc9f18434eda7cd880 127 SUPERFAMILY SSF50104 1 119 6.62E-44 T 23-04-2016 IPR008991 Translation protein SH3-like domain RD1_RS06030 1d5915c40168f2dc9f18434eda7cd880 127 ProSitePatterns PS01015 Ribosomal protein L19 signature. 89 104 - T 23-04-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06030 1d5915c40168f2dc9f18434eda7cd880 127 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 117 29.614 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06030 1d5915c40168f2dc9f18434eda7cd880 127 PANTHER PTHR15680 2 115 6.6E-49 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06030 1d5915c40168f2dc9f18434eda7cd880 127 PIRSF PIRSF002191 1 127 1.7E-53 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06030 1d5915c40168f2dc9f18434eda7cd880 127 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 1 116 2.2E-45 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 Gene3D G3DSA:3.30.70.20 174 195 8.1E-12 T 23-04-2016 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 Gene3D G3DSA:3.30.70.20 121 122 8.1E-12 T 23-04-2016 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 Gene3D G3DSA:3.30.70.20 10 26 8.1E-12 T 23-04-2016 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 Pfam PF13247 4Fe-4S dicluster domain 175 271 4.4E-38 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS11225 eefe90822bfb70c10f13176020975176 506 Pfam PF14711 Respiratory nitrate reductase beta C-terminal 358 435 2.2E-31 T 23-04-2016 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.99.4 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 Gene3D G3DSA:1.10.3650.10 359 434 4.9E-31 T 23-04-2016 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.99.4 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 SUPERFAMILY SSF54862 1 490 1.99E-174 T 23-04-2016 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 TIGRFAM TIGR01660 narH: nitrate reductase, beta subunit 1 492 6.9E-293 T 23-04-2016 IPR006547 Nitrate reductase, beta subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 Gene3D G3DSA:3.30.70.20 196 235 1.5E-24 T 23-04-2016 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 PANTHER PTHR11938 1 31 1.6E-119 T 23-04-2016 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 PANTHER PTHR11938 134 143 1.6E-119 T 23-04-2016 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 PANTHER PTHR11938 170 457 1.6E-119 T 23-04-2016 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 Gene3D G3DSA:3.30.70.20 436 465 5.8E-72 T 23-04-2016 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 Gene3D G3DSA:3.30.70.20 236 358 5.8E-72 T 23-04-2016 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 PANTHER PTHR11938:SF8 1 31 1.6E-119 T 23-04-2016 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 PANTHER PTHR11938:SF8 134 143 1.6E-119 T 23-04-2016 RD1_RS11225 eefe90822bfb70c10f13176020975176 506 PANTHER PTHR11938:SF8 170 457 1.6E-119 T 23-04-2016 RD1_RS19295 f2dab951dfc1ecca3fa0709d30cf7be9 795 PANTHER PTHR35861 595 790 1.3E-45 T 23-04-2016 RD1_RS19295 f2dab951dfc1ecca3fa0709d30cf7be9 795 Pfam PF04984 Phage tail sheath protein 594 790 8.7E-27 T 23-04-2016 IPR007067 Tail sheath protein RD1_RS19295 f2dab951dfc1ecca3fa0709d30cf7be9 795 Pfam PF16184 Cadherin-like 294 406 3.7E-7 T 23-04-2016 RD1_RS19295 f2dab951dfc1ecca3fa0709d30cf7be9 795 PANTHER PTHR35861:SF1 595 790 1.3E-45 T 23-04-2016 RD1_RS02615 472470cd9712918a2c705fbcbe3e568f 186 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 2 40 3.7E-21 T 23-04-2016 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RD1_RS02615 472470cd9712918a2c705fbcbe3e568f 186 PANTHER PTHR10134 10 186 5.6E-70 T 23-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 RD1_RS02615 472470cd9712918a2c705fbcbe3e568f 186 PRINTS PR00162 Rieske 2Fe-2S subunit signature 158 170 7.8E-17 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RD1_RS02615 472470cd9712918a2c705fbcbe3e568f 186 PRINTS PR00162 Rieske 2Fe-2S subunit signature 146 158 7.8E-17 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RD1_RS02615 472470cd9712918a2c705fbcbe3e568f 186 PRINTS PR00162 Rieske 2Fe-2S subunit signature 124 135 7.8E-17 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RD1_RS02615 472470cd9712918a2c705fbcbe3e568f 186 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 10 186 1.7E-67 T 23-04-2016 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RD1_RS02615 472470cd9712918a2c705fbcbe3e568f 186 SUPERFAMILY SSF50022 29 181 1.19E-38 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS02615 472470cd9712918a2c705fbcbe3e568f 186 Gene3D G3DSA:2.102.10.10 50 183 3.3E-41 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS02615 472470cd9712918a2c705fbcbe3e568f 186 PANTHER PTHR10134:SF1 10 186 5.6E-70 T 23-04-2016 RD1_RS02615 472470cd9712918a2c705fbcbe3e568f 186 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 10 38 1.9E-6 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RD1_RS02615 472470cd9712918a2c705fbcbe3e568f 186 Gene3D G3DSA:1.20.5.510 2 40 4.0E-24 T 23-04-2016 RD1_RS02615 472470cd9712918a2c705fbcbe3e568f 186 Pfam PF00355 Rieske [2Fe-2S] domain 112 172 2.6E-12 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS03655 3cf0a032c550df35c0e18f62613044e7 723 Gene3D G3DSA:3.30.420.10 319 491 1.4E-12 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS03655 3cf0a032c550df35c0e18f62613044e7 723 Pfam PF09299 Mu transposase, C-terminal 521 568 2.2E-5 T 23-04-2016 IPR015378 Transposase-like, Mu, C-terminal RD1_RS03655 3cf0a032c550df35c0e18f62613044e7 723 SUPERFAMILY SSF53098 286 442 1.54E-8 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS03655 3cf0a032c550df35c0e18f62613044e7 723 SUPERFAMILY SSF53098 472 491 1.54E-8 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS06635 85fca478d67afdf6fd4de4ae785831a3 215 Pfam PF05191 Adenylate kinase, active site lid 126 163 6.7E-7 T 23-04-2016 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS06635 85fca478d67afdf6fd4de4ae785831a3 215 PANTHER PTHR23359 1 214 1.3E-71 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS06635 85fca478d67afdf6fd4de4ae785831a3 215 Hamap MF_00235 Adenylate kinase [adk]. 1 214 42.453 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS06635 85fca478d67afdf6fd4de4ae785831a3 215 TIGRFAM TIGR01351 adk: adenylate kinase 2 213 6.4E-68 T 23-04-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS06635 85fca478d67afdf6fd4de4ae785831a3 215 SUPERFAMILY SSF52540 1 213 7.17E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06635 85fca478d67afdf6fd4de4ae785831a3 215 ProSitePatterns PS00113 Adenylate kinase signature. 80 91 - T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS06635 85fca478d67afdf6fd4de4ae785831a3 215 PRINTS PR00094 Adenylate kinase signature 161 176 2.6E-33 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS06635 85fca478d67afdf6fd4de4ae785831a3 215 PRINTS PR00094 Adenylate kinase signature 80 96 2.6E-33 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS06635 85fca478d67afdf6fd4de4ae785831a3 215 PRINTS PR00094 Adenylate kinase signature 32 46 2.6E-33 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS06635 85fca478d67afdf6fd4de4ae785831a3 215 PRINTS PR00094 Adenylate kinase signature 4 17 2.6E-33 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS06635 85fca478d67afdf6fd4de4ae785831a3 215 PRINTS PR00094 Adenylate kinase signature 178 192 2.6E-33 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS06635 85fca478d67afdf6fd4de4ae785831a3 215 Gene3D G3DSA:3.40.50.300 1 212 5.3E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06635 85fca478d67afdf6fd4de4ae785831a3 215 Pfam PF00406 Adenylate kinase 5 191 7.0E-53 T 23-04-2016 RD1_RS01795 63a372a9c379593fa9840a3ba58eaa77 132 PANTHER PTHR22769:SF35 1 132 1.1E-32 T 23-04-2016 RD1_RS01795 63a372a9c379593fa9840a3ba58eaa77 132 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.5E-9 T 23-04-2016 IPR020476 NUDIX hydrolase RD1_RS01795 63a372a9c379593fa9840a3ba58eaa77 132 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.5E-9 T 23-04-2016 IPR020476 NUDIX hydrolase RD1_RS01795 63a372a9c379593fa9840a3ba58eaa77 132 SUPERFAMILY SSF55811 2 128 3.25E-39 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS01795 63a372a9c379593fa9840a3ba58eaa77 132 PANTHER PTHR22769 1 132 1.1E-32 T 23-04-2016 RD1_RS01795 63a372a9c379593fa9840a3ba58eaa77 132 Pfam PF00293 NUDIX domain 4 126 3.2E-20 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RD1_RS01795 63a372a9c379593fa9840a3ba58eaa77 132 TIGRFAM TIGR00586 mutt: mutator mutT protein 2 129 5.1E-29 T 23-04-2016 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 RD1_RS01795 63a372a9c379593fa9840a3ba58eaa77 132 Gene3D G3DSA:3.90.79.10 5 129 5.3E-37 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS01795 63a372a9c379593fa9840a3ba58eaa77 132 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RD1_RS08005 732fc9167e999028251fd43005cf44ea 416 PANTHER PTHR30489 223 415 2.6E-77 T 23-04-2016 RD1_RS08005 732fc9167e999028251fd43005cf44ea 416 PANTHER PTHR30489 1 200 2.6E-77 T 23-04-2016 RD1_RS08005 732fc9167e999028251fd43005cf44ea 416 PANTHER PTHR30489:SF2 223 415 2.6E-77 T 23-04-2016 RD1_RS08005 732fc9167e999028251fd43005cf44ea 416 PANTHER PTHR30489:SF2 1 200 2.6E-77 T 23-04-2016 RD1_RS08005 732fc9167e999028251fd43005cf44ea 416 Pfam PF12704 MacB-like periplasmic core domain 19 211 2.5E-13 T 23-04-2016 IPR025857 MacB-like periplasmic core domain RD1_RS08005 732fc9167e999028251fd43005cf44ea 416 Pfam PF02687 FtsX-like permease family 290 407 1.1E-15 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 SUPERFAMILY SSF141868 529 774 3.01E-77 T 23-04-2016 IPR001633 EAL domain RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 PANTHER PTHR33121 457 783 2.0E-74 T 23-04-2016 RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 SUPERFAMILY SSF55785 231 343 6.28E-7 T 23-04-2016 IPR000014 PAS domain RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 SMART SM00065 75 223 3.5E-5 T 23-04-2016 IPR003018 GAF domain GO:0005515 RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 SUPERFAMILY SSF55073 359 513 6.2E-36 T 23-04-2016 IPR029787 Nucleotide cyclase RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 Gene3D G3DSA:3.30.70.270 356 518 2.1E-43 T 23-04-2016 RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 SUPERFAMILY SSF55781 76 215 1.1E-22 T 23-04-2016 IPR029016 GAF domain-like RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 Pfam PF00990 Diguanylate cyclase, GGDEF domain 354 507 6.9E-38 T 23-04-2016 IPR000160 GGDEF domain RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 Gene3D G3DSA:3.20.20.450 525 773 7.4E-83 T 23-04-2016 IPR001633 EAL domain RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 Pfam PF00563 EAL domain 528 761 2.2E-61 T 23-04-2016 IPR001633 EAL domain RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 Gene3D G3DSA:3.30.450.20 215 341 1.0E-6 T 23-04-2016 RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 SMART SM00267 341 511 4.8E-46 T 23-04-2016 IPR000160 GGDEF domain RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 351 510 1.2E-32 T 23-04-2016 IPR000160 GGDEF domain RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 Pfam PF01590 GAF domain 77 203 2.0E-9 T 23-04-2016 IPR003018 GAF domain GO:0005515 RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 PANTHER PTHR33121:SF13 457 783 2.0E-74 T 23-04-2016 RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 Gene3D G3DSA:3.30.450.40 76 203 8.4E-11 T 23-04-2016 IPR029016 GAF domain-like RD1_RS10240 233133501d45c72534e04aff49a5bfc4 785 SMART SM00052 521 766 1.7E-90 T 23-04-2016 IPR001633 EAL domain RD1_RS03495 7a6a6a889e9a4530fba61030db8d40b7 202 PANTHER PTHR32063 1 192 4.6E-59 T 23-04-2016 RD1_RS03495 7a6a6a889e9a4530fba61030db8d40b7 202 Pfam PF00873 AcrB/AcrD/AcrF family 5 184 1.5E-34 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS03495 7a6a6a889e9a4530fba61030db8d40b7 202 PANTHER PTHR32063:SF18 1 192 4.6E-59 T 23-04-2016 RD1_RS03495 7a6a6a889e9a4530fba61030db8d40b7 202 Gene3D G3DSA:1.10.3850.10 5 185 1.4E-47 T 23-04-2016 RD1_RS03495 7a6a6a889e9a4530fba61030db8d40b7 202 SUPERFAMILY SSF82866 5 186 4.84E-43 T 23-04-2016 RD1_RS05520 67ea4eea012c9f239045a643771c5e23 292 SUPERFAMILY SSF88659 189 284 1.05E-17 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS05520 67ea4eea012c9f239045a643771c5e23 292 Pfam PF04542 Sigma-70 region 2 45 114 3.5E-19 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS05520 67ea4eea012c9f239045a643771c5e23 292 Pfam PF04545 Sigma-70, region 4 227 278 1.7E-14 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS05520 67ea4eea012c9f239045a643771c5e23 292 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 42 280 8.4E-31 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS05520 67ea4eea012c9f239045a643771c5e23 292 Gene3D G3DSA:1.10.601.10 16 113 2.3E-32 T 23-04-2016 RD1_RS05520 67ea4eea012c9f239045a643771c5e23 292 PRINTS PR00046 Major sigma-70 factor signature 250 265 2.1E-20 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS05520 67ea4eea012c9f239045a643771c5e23 292 PRINTS PR00046 Major sigma-70 factor signature 231 243 2.1E-20 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS05520 67ea4eea012c9f239045a643771c5e23 292 PRINTS PR00046 Major sigma-70 factor signature 69 82 2.1E-20 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS05520 67ea4eea012c9f239045a643771c5e23 292 PRINTS PR00046 Major sigma-70 factor signature 265 276 2.1E-20 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS05520 67ea4eea012c9f239045a643771c5e23 292 PRINTS PR00046 Major sigma-70 factor signature 93 101 2.1E-20 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS05520 67ea4eea012c9f239045a643771c5e23 292 Gene3D G3DSA:1.10.10.10 223 284 1.3E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS05520 67ea4eea012c9f239045a643771c5e23 292 PANTHER PTHR30376 19 281 4.4E-63 T 23-04-2016 RD1_RS05520 67ea4eea012c9f239045a643771c5e23 292 SUPERFAMILY SSF88946 16 113 7.46E-34 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS08580 2786ac4bcd13dd46851e9532a2aec5f3 403 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 259 374 7.2E-25 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RD1_RS08580 2786ac4bcd13dd46851e9532a2aec5f3 403 Gene3D G3DSA:3.30.1220.10 249 374 8.5E-14 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RD1_RS08580 2786ac4bcd13dd46851e9532a2aec5f3 403 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 7 211 1.3E-54 T 23-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RD1_RS08580 2786ac4bcd13dd46851e9532a2aec5f3 403 Gene3D G3DSA:3.40.50.300 4 230 5.7E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08580 2786ac4bcd13dd46851e9532a2aec5f3 403 PANTHER PTHR13748:SF4 348 387 1.0E-171 T 23-04-2016 RD1_RS08580 2786ac4bcd13dd46851e9532a2aec5f3 403 PANTHER PTHR13748:SF4 3 332 1.0E-171 T 23-04-2016 RD1_RS08580 2786ac4bcd13dd46851e9532a2aec5f3 403 SMART SM00833 259 374 3.0E-45 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RD1_RS08580 2786ac4bcd13dd46851e9532a2aec5f3 403 PANTHER PTHR13748 348 387 1.0E-171 T 23-04-2016 RD1_RS08580 2786ac4bcd13dd46851e9532a2aec5f3 403 PANTHER PTHR13748 3 332 1.0E-171 T 23-04-2016 RD1_RS08580 2786ac4bcd13dd46851e9532a2aec5f3 403 SUPERFAMILY SSF52540 5 316 8.85E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04825 a40e3e912315bd7bf99448af8c2acfec 582 Pfam PF12362 DNA polymerase III gamma and tau subunits C terminal 442 554 1.9E-37 T 23-04-2016 IPR022107 DNA polymerase III, subunit gamma/ tau, C-terminal RD1_RS04825 a40e3e912315bd7bf99448af8c2acfec 582 SUPERFAMILY SSF52540 39 233 1.47E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04825 a40e3e912315bd7bf99448af8c2acfec 582 SUPERFAMILY SSF48019 254 380 1.28E-30 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RD1_RS04825 a40e3e912315bd7bf99448af8c2acfec 582 SMART SM00382 43 190 5.3E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS04825 a40e3e912315bd7bf99448af8c2acfec 582 Gene3D G3DSA:3.40.50.300 21 177 1.4E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04825 a40e3e912315bd7bf99448af8c2acfec 582 PANTHER PTHR11669:SF0 1 422 2.6E-168 T 23-04-2016 RD1_RS04825 a40e3e912315bd7bf99448af8c2acfec 582 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 244 385 1.8E-54 T 23-04-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 RD1_RS04825 a40e3e912315bd7bf99448af8c2acfec 582 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 9 369 9.2E-127 T 23-04-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 RD1_RS04825 a40e3e912315bd7bf99448af8c2acfec 582 Pfam PF13177 DNA polymerase III, delta subunit 26 189 3.3E-36 T 23-04-2016 RD1_RS04825 a40e3e912315bd7bf99448af8c2acfec 582 Gene3D G3DSA:1.10.8.60 178 253 9.6E-30 T 23-04-2016 RD1_RS04825 a40e3e912315bd7bf99448af8c2acfec 582 PANTHER PTHR11669 1 422 2.6E-168 T 23-04-2016 RD1_RS04825 a40e3e912315bd7bf99448af8c2acfec 582 Gene3D G3DSA:1.20.272.10 254 371 3.3E-28 T 23-04-2016 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 SUPERFAMILY SSF50494 100 285 2.18E-67 T 23-04-2016 IPR009003 Peptidase S1, PA clan RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 SUPERFAMILY SSF50494 20 63 2.18E-67 T 23-04-2016 IPR009003 Peptidase S1, PA clan RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 SMART SM00228 406 476 1.8E-4 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 SMART SM00228 275 356 5.7E-9 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 Gene3D G3DSA:2.40.10.10 38 168 2.4E-35 T 23-04-2016 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 Pfam PF13365 Trypsin-like peptidase domain 103 236 8.4E-36 T 23-04-2016 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 Pfam PF13180 PDZ domain 275 365 4.0E-14 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 Pfam PF13180 PDZ domain 409 470 1.7E-8 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 Gene3D G3DSA:2.40.10.10 169 276 3.1E-43 T 23-04-2016 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 Gene3D G3DSA:2.30.42.10 277 371 1.2E-25 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 Gene3D G3DSA:2.30.42.10 392 486 5.3E-16 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 44 482 4.0E-138 T 23-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 PANTHER PTHR22939:SF79 41 65 2.8E-107 T 23-04-2016 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 PANTHER PTHR22939:SF79 85 400 2.8E-107 T 23-04-2016 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 PANTHER PTHR22939 41 65 2.8E-107 T 23-04-2016 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 PANTHER PTHR22939 85 400 2.8E-107 T 23-04-2016 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 SUPERFAMILY SSF50156 257 365 1.73E-18 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 PRINTS PR00834 HtrA/DegQ protease family signature 133 153 2.0E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 PRINTS PR00834 HtrA/DegQ protease family signature 314 326 2.0E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 PRINTS PR00834 HtrA/DegQ protease family signature 112 124 2.0E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 PRINTS PR00834 HtrA/DegQ protease family signature 174 198 2.0E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 PRINTS PR00834 HtrA/DegQ protease family signature 207 224 2.0E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 PRINTS PR00834 HtrA/DegQ protease family signature 229 246 2.0E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RD1_RS08900 d79be6c06a958200eca06031a3cf9676 487 SUPERFAMILY SSF50156 392 485 2.5E-13 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 Gene3D G3DSA:1.10.730.10 619 716 3.2E-6 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 Pfam PF05746 DALR anticodon binding domain 617 716 5.5E-10 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 1 726 23.37 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 Gene3D G3DSA:1.10.3210.10 491 526 5.1E-4 T 23-04-2016 IPR006674 HD domain RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 Gene3D G3DSA:1.10.3210.10 345 457 5.1E-4 T 23-04-2016 IPR006674 HD domain RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 PANTHER PTHR30075:SF2 553 727 5.5E-240 T 23-04-2016 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 PANTHER PTHR30075:SF2 517 534 5.5E-240 T 23-04-2016 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 PANTHER PTHR30075:SF2 1 501 5.5E-240 T 23-04-2016 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 5 18 4.7E-29 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 313 329 4.7E-29 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 240 255 4.7E-29 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 392 411 4.7E-29 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 48 60 4.7E-29 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 4 583 2.5E-194 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 SMART SM00836 614 726 0.0014 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 3 506 1.4E-137 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 SUPERFAMILY SSF109604 345 497 5.76E-17 T 23-04-2016 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 PANTHER PTHR30075 553 727 5.5E-240 T 23-04-2016 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 PANTHER PTHR30075 517 534 5.5E-240 T 23-04-2016 RD1_RS09000 f949e679cd4a7cb0ef25671f88db3fcf 728 PANTHER PTHR30075 1 501 5.5E-240 T 23-04-2016 RD1_RS13970 cc9d0fa486ef028e0a2db8a847f8c39e 310 Pfam PF00698 Acyl transferase domain 5 240 1.7E-34 T 23-04-2016 IPR014043 Acyl transferase RD1_RS13970 cc9d0fa486ef028e0a2db8a847f8c39e 310 SUPERFAMILY SSF55048 129 198 1.83E-16 T 23-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 RD1_RS13970 cc9d0fa486ef028e0a2db8a847f8c39e 310 SUPERFAMILY SSF52151 191 308 9.68E-73 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RD1_RS13970 cc9d0fa486ef028e0a2db8a847f8c39e 310 SUPERFAMILY SSF52151 3 123 9.68E-73 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RD1_RS13970 cc9d0fa486ef028e0a2db8a847f8c39e 310 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 1 292 7.1E-95 T 23-04-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 RD1_RS13970 cc9d0fa486ef028e0a2db8a847f8c39e 310 PIRSF PIRSF000446 1 310 2.8E-94 T 23-04-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388|UniPathway: UPA00094 RD1_RS13970 cc9d0fa486ef028e0a2db8a847f8c39e 310 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 303 3.4E-38 T 23-04-2016 IPR020801 Polyketide synthase, acyl transferase domain RD1_RS13970 cc9d0fa486ef028e0a2db8a847f8c39e 310 Gene3D G3DSA:3.30.70.250 126 197 1.4E-25 T 23-04-2016 RD1_RS13970 cc9d0fa486ef028e0a2db8a847f8c39e 310 PANTHER PTHR10982 1 307 1.7E-131 T 23-04-2016 RD1_RS13970 cc9d0fa486ef028e0a2db8a847f8c39e 310 Gene3D G3DSA:3.40.366.10 2 123 1.3E-68 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RD1_RS13970 cc9d0fa486ef028e0a2db8a847f8c39e 310 Gene3D G3DSA:3.40.366.10 198 307 1.3E-68 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RD1_RS05035 ca4fd3fa36d123a273f7c00fe8881a22 787 SUPERFAMILY SSF82861 478 578 2.48E-11 T 23-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RD1_RS05035 ca4fd3fa36d123a273f7c00fe8881a22 787 Gene3D G3DSA:3.30.70.100 646 735 2.1E-11 T 23-04-2016 RD1_RS05035 ca4fd3fa36d123a273f7c00fe8881a22 787 Gene3D G3DSA:2.30.30.60 596 642 3.5E-10 T 23-04-2016 RD1_RS05035 ca4fd3fa36d123a273f7c00fe8881a22 787 PANTHER PTHR30460 1 768 3.1E-68 T 23-04-2016 RD1_RS05035 ca4fd3fa36d123a273f7c00fe8881a22 787 SUPERFAMILY SSF50182 580 643 3.6E-9 T 23-04-2016 IPR010920 LSM domain RD1_RS05035 ca4fd3fa36d123a273f7c00fe8881a22 787 Pfam PF00924 Mechanosensitive ion channel 537 737 1.6E-41 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RD1_RS05035 ca4fd3fa36d123a273f7c00fe8881a22 787 SUPERFAMILY SSF82689 643 746 2.22E-15 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RD1_RS03440 72bf5799754ea6aea8a236696dcb1707 318 Pfam PF00899 ThiF family 4 225 1.4E-46 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RD1_RS03440 72bf5799754ea6aea8a236696dcb1707 318 PANTHER PTHR10953:SF158 3 215 2.0E-49 T 23-04-2016 RD1_RS03440 72bf5799754ea6aea8a236696dcb1707 318 Gene3D G3DSA:3.40.50.720 2 226 1.8E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03440 72bf5799754ea6aea8a236696dcb1707 318 SUPERFAMILY SSF69572 2 230 3.4E-64 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RD1_RS03440 72bf5799754ea6aea8a236696dcb1707 318 PANTHER PTHR10953 3 215 2.0E-49 T 23-04-2016 RD1_RS16155 963b4bcd7379772f26499639ceafbd3d 355 Gene3D G3DSA:3.40.50.20 6 114 5.4E-33 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS16155 963b4bcd7379772f26499639ceafbd3d 355 PANTHER PTHR11609 7 354 2.8E-127 T 23-04-2016 RD1_RS16155 963b4bcd7379772f26499639ceafbd3d 355 Pfam PF02222 ATP-grasp domain 115 283 1.7E-54 T 23-04-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 RD1_RS16155 963b4bcd7379772f26499639ceafbd3d 355 PANTHER PTHR11609:SF5 7 354 2.8E-127 T 23-04-2016 RD1_RS16155 963b4bcd7379772f26499639ceafbd3d 355 Gene3D G3DSA:3.30.1490.20 121 184 5.3E-22 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS16155 963b4bcd7379772f26499639ceafbd3d 355 SUPERFAMILY SSF56059 106 302 4.07E-65 T 23-04-2016 RD1_RS16155 963b4bcd7379772f26499639ceafbd3d 355 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 10 353 8.5E-115 T 23-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RD1_RS16155 963b4bcd7379772f26499639ceafbd3d 355 SUPERFAMILY SSF51246 307 353 1.96E-12 T 23-04-2016 IPR011054 Rudiment single hybrid motif RD1_RS16155 963b4bcd7379772f26499639ceafbd3d 355 SUPERFAMILY SSF52440 5 103 4.32E-27 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS16155 963b4bcd7379772f26499639ceafbd3d 355 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 10 355 41.008 T 23-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RD1_RS16155 963b4bcd7379772f26499639ceafbd3d 355 Gene3D G3DSA:3.30.470.20 185 354 1.8E-64 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS08110 6e6e44896f6bddbf723cdfec2b3c895b 359 PANTHER PTHR33840 2 290 2.0E-47 T 23-04-2016 RD1_RS08110 6e6e44896f6bddbf723cdfec2b3c895b 359 SUPERFAMILY SSF53474 17 141 6.25E-7 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08110 6e6e44896f6bddbf723cdfec2b3c895b 359 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 36 283 1.8E-56 T 23-04-2016 IPR018712 Domain of unknown function DUF2235 RD1_RS15430 0682ca28af0f91ff701194d23ab7a34b 464 PANTHER PTHR23135:SF2 1 464 2.1E-130 T 23-04-2016 RD1_RS15430 0682ca28af0f91ff701194d23ab7a34b 464 SUPERFAMILY SSF51984 7 97 5.1E-12 T 23-04-2016 RD1_RS15430 0682ca28af0f91ff701194d23ab7a34b 464 Gene3D G3DSA:3.40.1190.10 113 329 1.6E-53 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15430 0682ca28af0f91ff701194d23ab7a34b 464 Pfam PF08245 Mur ligase middle domain 125 310 2.2E-29 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15430 0682ca28af0f91ff701194d23ab7a34b 464 SUPERFAMILY SSF53244 329 462 1.05E-40 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RD1_RS15430 0682ca28af0f91ff701194d23ab7a34b 464 SUPERFAMILY SSF53623 119 327 2.09E-47 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15430 0682ca28af0f91ff701194d23ab7a34b 464 Pfam PF02875 Mur ligase family, glutamate ligase domain 331 394 8.7E-7 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RD1_RS15430 0682ca28af0f91ff701194d23ab7a34b 464 Gene3D G3DSA:3.90.190.20 330 458 8.9E-43 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RD1_RS15430 0682ca28af0f91ff701194d23ab7a34b 464 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 12 460 5.4E-107 T 23-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15430 0682ca28af0f91ff701194d23ab7a34b 464 Gene3D G3DSA:3.40.50.720 7 97 6.5E-14 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15430 0682ca28af0f91ff701194d23ab7a34b 464 PANTHER PTHR23135 1 464 2.1E-130 T 23-04-2016 RD1_RS15430 0682ca28af0f91ff701194d23ab7a34b 464 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 10 463 30.461 T 23-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS05995 2fa08ef85b194484698526cc663019ba 294 Pfam PF00892 EamA-like transporter family 30 138 1.1E-7 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS05995 2fa08ef85b194484698526cc663019ba 294 Pfam PF00892 EamA-like transporter family 150 276 5.9E-9 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS05995 2fa08ef85b194484698526cc663019ba 294 PANTHER PTHR22911 1 278 6.3E-20 T 23-04-2016 RD1_RS05995 2fa08ef85b194484698526cc663019ba 294 SUPERFAMILY SSF103481 38 142 9.02E-9 T 23-04-2016 RD1_RS05995 2fa08ef85b194484698526cc663019ba 294 SUPERFAMILY SSF103481 186 276 8.11E-7 T 23-04-2016 RD1_RS01485 4c9a1a59831764a60e0ee2c823fdebff 205 PANTHER PTHR30055:SF76 1 203 7.6E-31 T 23-04-2016 RD1_RS01485 4c9a1a59831764a60e0ee2c823fdebff 205 SUPERFAMILY SSF48498 90 202 8.3E-8 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RD1_RS01485 4c9a1a59831764a60e0ee2c823fdebff 205 Gene3D G3DSA:1.10.10.60 9 68 1.9E-17 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS01485 4c9a1a59831764a60e0ee2c823fdebff 205 SUPERFAMILY SSF46689 6 78 5.49E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS01485 4c9a1a59831764a60e0ee2c823fdebff 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 62 1.6E-13 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS01485 4c9a1a59831764a60e0ee2c823fdebff 205 Gene3D G3DSA:1.10.357.10 69 205 9.7E-35 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RD1_RS01485 4c9a1a59831764a60e0ee2c823fdebff 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 2.3E-7 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS01485 4c9a1a59831764a60e0ee2c823fdebff 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 2.3E-7 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS01485 4c9a1a59831764a60e0ee2c823fdebff 205 ProSitePatterns PS01081 TetR-type HTH domain signature. 29 59 - T 23-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RD1_RS01485 4c9a1a59831764a60e0ee2c823fdebff 205 PANTHER PTHR30055 1 203 7.6E-31 T 23-04-2016 RD1_RS01485 4c9a1a59831764a60e0ee2c823fdebff 205 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 149 203 9.9E-15 T 23-04-2016 RD1_RS15550 31c5f01be3e14fb322e0b4a995ac0d36 306 Pfam PF02153 Prephenate dehydrogenase 23 277 1.0E-74 T 23-04-2016 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 RD1_RS15550 31c5f01be3e14fb322e0b4a995ac0d36 306 PANTHER PTHR21363 1 289 3.3E-72 T 23-04-2016 RD1_RS15550 31c5f01be3e14fb322e0b4a995ac0d36 306 SUPERFAMILY SSF51735 7 173 1.33E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15550 31c5f01be3e14fb322e0b4a995ac0d36 306 PANTHER PTHR21363:SF0 1 289 3.3E-72 T 23-04-2016 RD1_RS15550 31c5f01be3e14fb322e0b4a995ac0d36 306 Gene3D G3DSA:3.40.50.720 7 177 3.5E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15550 31c5f01be3e14fb322e0b4a995ac0d36 306 SUPERFAMILY SSF48179 178 287 7.25E-31 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS17410 eca5aaadbca3110547bb921f23dd070d 163 Gene3D G3DSA:2.60.260.20 8 65 2.3E-8 T 23-04-2016 RD1_RS17410 eca5aaadbca3110547bb921f23dd070d 163 Pfam PF02814 UreE urease accessory protein, N-terminal domain 10 63 2.9E-16 T 23-04-2016 IPR004029 UreE urease accessory, N-terminal RD1_RS17410 eca5aaadbca3110547bb921f23dd070d 163 SMART SM00988 1 63 2.4E-19 T 23-04-2016 IPR004029 UreE urease accessory, N-terminal RD1_RS17410 eca5aaadbca3110547bb921f23dd070d 163 Pfam PF05194 UreE urease accessory protein, C-terminal domain 71 156 3.8E-25 T 23-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 RD1_RS17410 eca5aaadbca3110547bb921f23dd070d 163 PIRSF PIRSF036402 1 163 1.1E-37 T 23-04-2016 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 RD1_RS17410 eca5aaadbca3110547bb921f23dd070d 163 Hamap MF_00822 Urease accessory protein UreE [ureE]. 1 134 21.822 T 23-04-2016 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 RD1_RS17410 eca5aaadbca3110547bb921f23dd070d 163 SUPERFAMILY SSF69737 69 133 4.58E-20 T 23-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 RD1_RS17410 eca5aaadbca3110547bb921f23dd070d 163 SUPERFAMILY SSF69287 5 69 3.53E-14 T 23-04-2016 IPR004029 UreE urease accessory, N-terminal RD1_RS17410 eca5aaadbca3110547bb921f23dd070d 163 Gene3D G3DSA:3.30.70.790 70 137 1.6E-28 T 23-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 SMART SM00926 16 70 1.6E-20 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 Gene3D G3DSA:2.40.40.20 748 913 9.1E-33 T 23-04-2016 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 PANTHER PTHR11615 341 647 2.7E-106 T 23-04-2016 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 PANTHER PTHR11615 14 257 2.7E-106 T 23-04-2016 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 PANTHER PTHR11615 696 925 2.7E-106 T 23-04-2016 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 Pfam PF00384 Molybdopterin oxidoreductase 73 590 1.7E-26 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 PANTHER PTHR11615:SF164 341 647 2.7E-106 T 23-04-2016 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 PANTHER PTHR11615:SF164 14 257 2.7E-106 T 23-04-2016 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 PANTHER PTHR11615:SF164 696 925 2.7E-106 T 23-04-2016 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 Gene3D G3DSA:2.20.25.90 17 74 1.4E-22 T 23-04-2016 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 Pfam PF01568 Molydopterin dinucleotide binding domain 774 850 6.4E-7 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 Gene3D G3DSA:3.40.228.10 152 268 9.0E-51 T 23-04-2016 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 Gene3D G3DSA:3.40.228.10 320 425 9.0E-51 T 23-04-2016 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 Gene3D G3DSA:3.40.50.740 494 618 9.2E-33 T 23-04-2016 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 Gene3D G3DSA:3.40.50.740 75 151 9.2E-33 T 23-04-2016 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 SUPERFAMILY SSF53706 11 729 3.01E-130 T 23-04-2016 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 18 69 7.3E-18 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RD1_RS04495 8d8b834141d8d73b19d3119aafdf3bb9 939 SUPERFAMILY SSF50692 762 914 2.01E-29 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain RD1_RS02250 4494c396bceb552e94d58021cfdbe677 264 SUPERFAMILY SSF52540 9 240 1.13E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02250 4494c396bceb552e94d58021cfdbe677 264 SMART SM00382 35 231 2.9E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS02250 4494c396bceb552e94d58021cfdbe677 264 Gene3D G3DSA:3.40.50.300 8 247 2.8E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02250 4494c396bceb552e94d58021cfdbe677 264 Pfam PF00005 ABC transporter 27 180 5.1E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS02250 4494c396bceb552e94d58021cfdbe677 264 PANTHER PTHR24220:SF520 12 260 8.7E-96 T 23-04-2016 RD1_RS02250 4494c396bceb552e94d58021cfdbe677 264 PANTHER PTHR24220 12 260 8.7E-96 T 23-04-2016 RD1_RS14310 72565fe150aa733a539cd5ef4c124b17 213 SMART SM00989 140 201 1.6E-13 T 23-04-2016 IPR004096 4-vinyl reductase, 4VR RD1_RS14310 72565fe150aa733a539cd5ef4c124b17 213 Pfam PF02830 V4R domain 160 200 2.4E-10 T 23-04-2016 IPR004096 4-vinyl reductase, 4VR RD1_RS14310 72565fe150aa733a539cd5ef4c124b17 213 Gene3D G3DSA:3.30.1380.20 117 201 7.7E-11 T 23-04-2016 RD1_RS14310 72565fe150aa733a539cd5ef4c124b17 213 SUPERFAMILY SSF111126 86 200 2.77E-14 T 23-04-2016 IPR024096 NO signalling/Golgi transport ligand-binding domain RD1_RS14310 72565fe150aa733a539cd5ef4c124b17 213 TIGRFAM TIGR02019 BchJ: bacteriochlorophyll 4-vinyl reductase 15 199 9.3E-35 T 23-04-2016 IPR010249 Bacteriochlorophyll 4-vinyl reductase GO:0015979|GO:0030494 UniPathway: UPA00671 RD1_RS06730 acac92c1cac2d0deca8d7b5cef579cf0 216 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 28 212 2.6E-68 T 23-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 RD1_RS06730 acac92c1cac2d0deca8d7b5cef579cf0 216 Pfam PF01926 50S ribosome-binding GTPase 46 164 4.4E-21 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS06730 acac92c1cac2d0deca8d7b5cef579cf0 216 SUPERFAMILY SSF52540 28 214 5.7E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06730 acac92c1cac2d0deca8d7b5cef579cf0 216 PANTHER PTHR11649 28 216 1.8E-57 T 23-04-2016 RD1_RS06730 acac92c1cac2d0deca8d7b5cef579cf0 216 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 34 216 27.11 T 23-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 RD1_RS06730 acac92c1cac2d0deca8d7b5cef579cf0 216 Gene3D G3DSA:3.40.50.300 34 214 1.9E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05655 5ea98e992fed275df5c1aea5a4652929 229 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS05655 5ea98e992fed275df5c1aea5a4652929 229 PANTHER PTHR24220:SF509 11 226 2.3E-88 T 23-04-2016 RD1_RS05655 5ea98e992fed275df5c1aea5a4652929 229 Pfam PF00005 ABC transporter 25 171 7.2E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS05655 5ea98e992fed275df5c1aea5a4652929 229 PANTHER PTHR24220 11 226 2.3E-88 T 23-04-2016 RD1_RS05655 5ea98e992fed275df5c1aea5a4652929 229 SMART SM00382 34 220 1.2E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS05655 5ea98e992fed275df5c1aea5a4652929 229 SUPERFAMILY SSF52540 12 224 2.93E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05655 5ea98e992fed275df5c1aea5a4652929 229 Gene3D G3DSA:3.40.50.300 19 221 2.6E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 SUPERFAMILY SSF51905 352 413 1.97E-32 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 SUPERFAMILY SSF51905 17 300 1.97E-32 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 SUPERFAMILY SSF54373 266 359 9.02E-9 T 23-04-2016 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 PANTHER PTHR11985:SF1 13 107 6.1E-158 T 23-04-2016 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 PANTHER PTHR11985:SF1 130 530 6.1E-158 T 23-04-2016 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 24 41 - T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 Pfam PF01266 FAD dependent oxidoreductase 20 366 1.1E-45 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 PANTHER PTHR11985 13 107 6.1E-158 T 23-04-2016 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 PANTHER PTHR11985 130 530 6.1E-158 T 23-04-2016 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 Gene3D G3DSA:3.50.50.60 13 341 1.2E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 93 105 5.1E-27 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 353 359 5.1E-27 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 48 60 5.1E-27 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 32 42 5.1E-27 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 386 398 5.1E-27 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 19 31 5.1E-27 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 420 526 2.1E-11 T 23-04-2016 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS13280 40e2cadb19fd0fa65e34ba81693a1c72 542 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 391 401 - T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS17035 14755ffd332b3cc60b7f6c3ab9499b24 260 Gene3D G3DSA:3.30.980.20 89 170 2.3E-27 T 23-04-2016 RD1_RS17035 14755ffd332b3cc60b7f6c3ab9499b24 260 PANTHER PTHR10000:SF19 6 217 2.3E-17 T 23-04-2016 RD1_RS17035 14755ffd332b3cc60b7f6c3ab9499b24 260 Pfam PF08282 haloacid dehalogenase-like hydrolase 170 219 1.2E-6 T 23-04-2016 IPR023214 HAD-like domain RD1_RS17035 14755ffd332b3cc60b7f6c3ab9499b24 260 Pfam PF08282 haloacid dehalogenase-like hydrolase 9 78 5.0E-5 T 23-04-2016 IPR023214 HAD-like domain RD1_RS17035 14755ffd332b3cc60b7f6c3ab9499b24 260 Gene3D G3DSA:3.40.50.1000 8 88 1.7E-29 T 23-04-2016 IPR023214 HAD-like domain RD1_RS17035 14755ffd332b3cc60b7f6c3ab9499b24 260 Gene3D G3DSA:3.40.50.1000 171 251 1.7E-29 T 23-04-2016 IPR023214 HAD-like domain RD1_RS17035 14755ffd332b3cc60b7f6c3ab9499b24 260 TIGRFAM TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family 8 251 3.0E-56 T 23-04-2016 IPR006381 HAD-superfamily hydrolase, superfamily IIB, MPGP GO:0005737|GO:0050531|GO:0051479 KEGG: 00051+3.1.3.70|MetaCyc: PWY-5656 RD1_RS17035 14755ffd332b3cc60b7f6c3ab9499b24 260 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 8 216 1.7E-15 T 23-04-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 RD1_RS17035 14755ffd332b3cc60b7f6c3ab9499b24 260 PANTHER PTHR10000 6 217 2.3E-17 T 23-04-2016 RD1_RS17035 14755ffd332b3cc60b7f6c3ab9499b24 260 SUPERFAMILY SSF56784 6 219 1.17E-37 T 23-04-2016 IPR023214 HAD-like domain RD1_RS06120 a23149b1eac1ab706029ae1933056335 261 PANTHER PTHR11751 92 115 2.9E-26 T 23-04-2016 RD1_RS06120 a23149b1eac1ab706029ae1933056335 261 PANTHER PTHR11751 10 76 2.9E-26 T 23-04-2016 RD1_RS06120 a23149b1eac1ab706029ae1933056335 261 SUPERFAMILY SSF48008 98 234 7.59E-26 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS06120 a23149b1eac1ab706029ae1933056335 261 Gene3D G3DSA:1.20.120.530 99 237 7.9E-25 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS06120 a23149b1eac1ab706029ae1933056335 261 Pfam PF07729 FCD domain 101 226 2.8E-21 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS06120 a23149b1eac1ab706029ae1933056335 261 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 4.0E-9 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS06120 a23149b1eac1ab706029ae1933056335 261 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 4.0E-9 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS06120 a23149b1eac1ab706029ae1933056335 261 Gene3D G3DSA:1.10.10.10 9 76 1.3E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS06120 a23149b1eac1ab706029ae1933056335 261 SUPERFAMILY SSF46785 9 78 1.48E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS06120 a23149b1eac1ab706029ae1933056335 261 SMART SM00345 15 74 2.5E-21 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS06120 a23149b1eac1ab706029ae1933056335 261 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 74 9.2E-18 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS06120 a23149b1eac1ab706029ae1933056335 261 PANTHER PTHR11751:SF355 92 115 2.9E-26 T 23-04-2016 RD1_RS06120 a23149b1eac1ab706029ae1933056335 261 PANTHER PTHR11751:SF355 10 76 2.9E-26 T 23-04-2016 RD1_RS06120 a23149b1eac1ab706029ae1933056335 261 SMART SM00895 99 227 2.7E-18 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS10855 c3ea2939dfefcbea7954689d8cd91ad8 522 SUPERFAMILY SSF50182 182 247 5.89E-16 T 23-04-2016 IPR010920 LSM domain RD1_RS10855 c3ea2939dfefcbea7954689d8cd91ad8 522 SUPERFAMILY SSF51206 365 495 9.03E-23 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RD1_RS10855 c3ea2939dfefcbea7954689d8cd91ad8 522 SMART SM00100 370 488 6.5E-13 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS10855 c3ea2939dfefcbea7954689d8cd91ad8 522 Gene3D G3DSA:2.60.120.10 365 493 5.7E-21 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS10855 c3ea2939dfefcbea7954689d8cd91ad8 522 PANTHER PTHR30221 145 376 1.3E-28 T 23-04-2016 RD1_RS10855 c3ea2939dfefcbea7954689d8cd91ad8 522 SUPERFAMILY SSF82689 257 348 3.4E-11 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RD1_RS10855 c3ea2939dfefcbea7954689d8cd91ad8 522 PANTHER PTHR30221:SF1 145 376 1.3E-28 T 23-04-2016 RD1_RS10855 c3ea2939dfefcbea7954689d8cd91ad8 522 Pfam PF00924 Mechanosensitive ion channel 144 339 2.9E-34 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RD1_RS10855 c3ea2939dfefcbea7954689d8cd91ad8 522 Gene3D G3DSA:2.30.30.60 197 246 1.6E-17 T 23-04-2016 RD1_RS10855 c3ea2939dfefcbea7954689d8cd91ad8 522 Pfam PF00027 Cyclic nucleotide-binding domain 390 475 4.5E-10 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS07850 7d516b60259710d4295479df3d6ddbf3 483 Pfam PF02397 Bacterial sugar transferase 288 477 1.4E-56 T 23-04-2016 IPR003362 Bacterial sugar transferase RD1_RS07850 7d516b60259710d4295479df3d6ddbf3 483 PANTHER PTHR30576:SF9 135 483 1.2E-120 T 23-04-2016 RD1_RS07850 7d516b60259710d4295479df3d6ddbf3 483 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 39 483 1.9E-116 T 23-04-2016 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase RD1_RS07850 7d516b60259710d4295479df3d6ddbf3 483 Pfam PF13727 CoA-binding domain 125 255 9.0E-26 T 23-04-2016 RD1_RS07850 7d516b60259710d4295479df3d6ddbf3 483 PANTHER PTHR30576 135 483 1.2E-120 T 23-04-2016 RD1_RS07850 7d516b60259710d4295479df3d6ddbf3 483 Gene3D G3DSA:3.40.50.720 160 235 2.0E-4 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13580 7d817b976ab38b9d2a8d443c0df13a7c 374 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 3 360 56.393 T 23-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RD1_RS13580 7d817b976ab38b9d2a8d443c0df13a7c 374 Pfam PF01702 Queuine tRNA-ribosyltransferase 129 360 7.4E-83 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RD1_RS13580 7d817b976ab38b9d2a8d443c0df13a7c 374 PANTHER PTHR21148:SF26 1 366 2.2E-153 T 23-04-2016 RD1_RS13580 7d817b976ab38b9d2a8d443c0df13a7c 374 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 5 364 1.5E-146 T 23-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RD1_RS13580 7d817b976ab38b9d2a8d443c0df13a7c 374 SUPERFAMILY SSF51713 1 364 7.19E-151 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RD1_RS13580 7d817b976ab38b9d2a8d443c0df13a7c 374 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 5 363 1.0E-140 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RD1_RS13580 7d817b976ab38b9d2a8d443c0df13a7c 374 PANTHER PTHR21148 1 366 2.2E-153 T 23-04-2016 RD1_RS13580 7d817b976ab38b9d2a8d443c0df13a7c 374 Gene3D G3DSA:3.20.20.105 2 365 3.9E-156 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RD1_RS01115 891c6e3e597aaf1e054f41e6b8306ad3 174 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 26 155 9.3E-20 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 Gene3D G3DSA:3.40.50.670 419 632 7.9E-78 T 23-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 578 641 8.1E-24 T 23-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 Gene3D G3DSA:3.30.230.10 233 410 9.8E-40 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR00418 DNA topoisomerase II family signature 519 536 7.0E-63 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR00418 DNA topoisomerase II family signature 286 299 7.0E-63 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR00418 DNA topoisomerase II family signature 122 136 7.0E-63 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR00418 DNA topoisomerase II family signature 501 517 7.0E-63 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR00418 DNA topoisomerase II family signature 539 551 7.0E-63 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR00418 DNA topoisomerase II family signature 582 598 7.0E-63 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR00418 DNA topoisomerase II family signature 78 91 7.0E-63 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR00418 DNA topoisomerase II family signature 435 449 7.0E-63 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR00418 DNA topoisomerase II family signature 43 58 7.0E-63 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PANTHER PTHR10169:SF20 9 652 6.0E-193 T 23-04-2016 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 Pfam PF01751 Toprim domain 434 540 9.8E-15 T 23-04-2016 IPR006171 Toprim domain RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 SMART SM00433 43 645 2.1E-291 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 SUPERFAMILY SSF54211 234 406 2.66E-39 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 SUPERFAMILY SSF55874 14 215 2.23E-59 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 39 184 1.7E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 12 644 1.6E-226 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 Gene3D G3DSA:3.30.565.10 14 216 3.3E-77 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 Pfam PF00204 DNA gyrase B 234 406 1.5E-42 T 23-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR01098 Topoisomerase IV subunit B signature 604 618 1.1E-16 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR01098 Topoisomerase IV subunit B signature 38 51 1.1E-16 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR01098 Topoisomerase IV subunit B signature 525 541 1.1E-16 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR01098 Topoisomerase IV subunit B signature 559 581 1.1E-16 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR01098 Topoisomerase IV subunit B signature 381 406 1.1E-16 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR01098 Topoisomerase IV subunit B signature 186 203 1.1E-16 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR01098 Topoisomerase IV subunit B signature 357 380 1.1E-16 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR01098 Topoisomerase IV subunit B signature 204 225 1.1E-16 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PRINTS PR01098 Topoisomerase IV subunit B signature 469 490 1.1E-16 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 SUPERFAMILY SSF56719 409 644 3.14E-76 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 SMART SM00387 39 185 3.6E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 ProSitePatterns PS00177 DNA topoisomerase II signature. 437 445 - T 23-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 11 649 41.632 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS09525 b4086db813d17aa3ff09e4d33aa18abd 652 PANTHER PTHR10169 9 652 6.0E-193 T 23-04-2016 RD1_RS09115 60d17a42f20d814b527afd689179e4ab 226 Hamap MF_00013 Octanoyltransferase [lipB]. 2 217 34.78 T 23-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RD1_RS09115 60d17a42f20d814b527afd689179e4ab 226 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 69 84 - T 23-04-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RD1_RS09115 60d17a42f20d814b527afd689179e4ab 226 SUPERFAMILY SSF55681 5 216 1.08E-64 T 23-04-2016 RD1_RS09115 60d17a42f20d814b527afd689179e4ab 226 Pfam PF03099 Biotin/lipoate A/B protein ligase family 65 170 2.1E-6 T 23-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 RD1_RS09115 60d17a42f20d814b527afd689179e4ab 226 PIRSF PIRSF016262 1 222 2.0E-56 T 23-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RD1_RS09115 60d17a42f20d814b527afd689179e4ab 226 Gene3D G3DSA:3.90.1550.10 4 215 6.3E-67 T 23-04-2016 RD1_RS09115 60d17a42f20d814b527afd689179e4ab 226 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 31 215 7.3E-46 T 23-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RD1_RS09115 60d17a42f20d814b527afd689179e4ab 226 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 74 126 1.0E-16 T 23-04-2016 RD1_RS09115 60d17a42f20d814b527afd689179e4ab 226 PANTHER PTHR10993 4 215 1.3E-64 T 23-04-2016 RD1_RS13165 3abed389bfff8e3f6a43d665bf4b4b99 352 Pfam PF00005 ABC transporter 20 161 2.0E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS13165 3abed389bfff8e3f6a43d665bf4b4b99 352 PANTHER PTHR24220 5 246 2.5E-153 T 23-04-2016 RD1_RS13165 3abed389bfff8e3f6a43d665bf4b4b99 352 Gene3D G3DSA:2.40.50.140 280 335 3.6E-7 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS13165 3abed389bfff8e3f6a43d665bf4b4b99 352 Gene3D G3DSA:3.40.50.300 5 234 9.8E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13165 3abed389bfff8e3f6a43d665bf4b4b99 352 SUPERFAMILY SSF50331 236 351 2.67E-20 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS13165 3abed389bfff8e3f6a43d665bf4b4b99 352 SMART SM00382 28 219 2.7E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS13165 3abed389bfff8e3f6a43d665bf4b4b99 352 PANTHER PTHR24220:SF151 5 246 2.5E-153 T 23-04-2016 RD1_RS13165 3abed389bfff8e3f6a43d665bf4b4b99 352 SUPERFAMILY SSF52540 5 242 4.41E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13165 3abed389bfff8e3f6a43d665bf4b4b99 352 Gene3D G3DSA:2.40.50.100 337 349 8.5E-6 T 23-04-2016 RD1_RS13165 3abed389bfff8e3f6a43d665bf4b4b99 352 Gene3D G3DSA:2.40.50.100 239 279 8.5E-6 T 23-04-2016 RD1_RS13165 3abed389bfff8e3f6a43d665bf4b4b99 352 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS13165 3abed389bfff8e3f6a43d665bf4b4b99 352 Pfam PF08402 TOBE domain 275 343 2.0E-6 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS05485 5bf30cde0e7589be4e0e94c396301632 285 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 11 233 32.259 T 23-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS05485 5bf30cde0e7589be4e0e94c396301632 285 PANTHER PTHR21091:SF18 12 225 1.7E-57 T 23-04-2016 RD1_RS05485 5bf30cde0e7589be4e0e94c396301632 285 SUPERFAMILY SSF53790 11 231 4.97E-72 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS05485 5bf30cde0e7589be4e0e94c396301632 285 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 12 281 6.5E-56 T 23-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS05485 5bf30cde0e7589be4e0e94c396301632 285 PANTHER PTHR21091 12 225 1.7E-57 T 23-04-2016 RD1_RS05485 5bf30cde0e7589be4e0e94c396301632 285 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 12 215 4.2E-28 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS05485 5bf30cde0e7589be4e0e94c396301632 285 Gene3D G3DSA:3.40.1010.10 12 121 1.4E-16 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RD1_RS05485 5bf30cde0e7589be4e0e94c396301632 285 Gene3D G3DSA:3.30.950.10 122 234 2.7E-41 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RD1_RS05485 5bf30cde0e7589be4e0e94c396301632 285 PIRSF PIRSF005917 2 285 4.5E-87 T 23-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 PIRSF PIRSF002401 1 343 1.5E-124 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 2.4E-33 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 2.4E-33 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 2.4E-33 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 2.4E-33 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 323 2.2E-133 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 SUPERFAMILY SSF52540 151 329 6.2E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 Pfam PF01018 GTP1/OBG 3 158 4.0E-58 T 23-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 Pfam PF01926 50S ribosome-binding GTPase 161 280 2.3E-23 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 23-04-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 PANTHER PTHR11702 1 334 5.8E-143 T 23-04-2016 RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 Hamap MF_01454 GTPase Obg [obg]. 2 327 45.327 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 PANTHER PTHR11702:SF3 1 334 5.8E-143 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 Gene3D G3DSA:2.70.210.12 2 155 3.2E-56 T 23-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 SUPERFAMILY SSF82051 2 158 5.1E-55 T 23-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RD1_RS12245 7d783c5518685c4d2ca2ae3fb0e82831 344 Gene3D G3DSA:3.40.50.300 160 336 1.1E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08910 8bc06e4659177b9f8f9823bae7a76734 107 Gene3D G3DSA:3.10.20.30 2 103 3.6E-37 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS08910 8bc06e4659177b9f8f9823bae7a76734 107 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 40 50 - T 23-04-2016 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 RD1_RS08910 8bc06e4659177b9f8f9823bae7a76734 107 SUPERFAMILY SSF54292 3 105 2.63E-33 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS08910 8bc06e4659177b9f8f9823bae7a76734 107 PRINTS PR00355 Adrenodoxin signature 40 50 4.9E-10 T 23-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 RD1_RS08910 8bc06e4659177b9f8f9823bae7a76734 107 PRINTS PR00355 Adrenodoxin signature 83 91 4.9E-10 T 23-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 RD1_RS08910 8bc06e4659177b9f8f9823bae7a76734 107 PRINTS PR00355 Adrenodoxin signature 59 73 4.9E-10 T 23-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 RD1_RS08910 8bc06e4659177b9f8f9823bae7a76734 107 PANTHER PTHR23426 3 104 6.0E-27 T 23-04-2016 RD1_RS08910 8bc06e4659177b9f8f9823bae7a76734 107 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 92 2.0E-16 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS09280 e9d96f809f7979ee145bfa64652b930c 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 68 84 1.8E-21 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS09280 e9d96f809f7979ee145bfa64652b930c 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 214 238 1.8E-21 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS09280 e9d96f809f7979ee145bfa64652b930c 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 88 104 1.8E-21 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS09280 e9d96f809f7979ee145bfa64652b930c 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 183 204 1.8E-21 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS09280 e9d96f809f7979ee145bfa64652b930c 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 46 66 1.8E-21 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS09280 e9d96f809f7979ee145bfa64652b930c 268 Gene3D G3DSA:3.30.540.10 7 161 2.9E-36 T 23-04-2016 RD1_RS09280 e9d96f809f7979ee145bfa64652b930c 268 TIGRFAM TIGR02067 his_9_HisN: histidinol-phosphatase 13 264 6.2E-85 T 23-04-2016 IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase GO:0004401 KEGG: 00340+3.1.3.15|UniPathway: UPA00031 RD1_RS09280 e9d96f809f7979ee145bfa64652b930c 268 Pfam PF00459 Inositol monophosphatase family 7 260 1.2E-46 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS09280 e9d96f809f7979ee145bfa64652b930c 268 SUPERFAMILY SSF56655 7 264 7.2E-67 T 23-04-2016 RD1_RS09280 e9d96f809f7979ee145bfa64652b930c 268 PANTHER PTHR20854 2 266 6.3E-77 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS09280 e9d96f809f7979ee145bfa64652b930c 268 PANTHER PTHR20854:SF38 2 266 6.3E-77 T 23-04-2016 RD1_RS09280 e9d96f809f7979ee145bfa64652b930c 268 Gene3D G3DSA:3.40.190.80 162 265 1.8E-24 T 23-04-2016 RD1_RS09280 e9d96f809f7979ee145bfa64652b930c 268 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 88 101 - T 23-04-2016 IPR020583 Inositol monophosphatase, metal-binding site RD1_RS14350 11f0e16eeb42cd2315b689148f4b90e4 406 PANTHER PTHR10657:SF11 30 263 2.0E-13 T 23-04-2016 RD1_RS14350 11f0e16eeb42cd2315b689148f4b90e4 406 Pfam PF00639 PPIC-type PPIASE domain 185 259 1.4E-7 T 23-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 RD1_RS14350 11f0e16eeb42cd2315b689148f4b90e4 406 SUPERFAMILY SSF54534 166 263 8.5E-14 T 23-04-2016 RD1_RS14350 11f0e16eeb42cd2315b689148f4b90e4 406 Pfam PF09312 SurA N-terminal domain 61 128 3.7E-8 T 23-04-2016 IPR015391 SurA N-terminal RD1_RS14350 11f0e16eeb42cd2315b689148f4b90e4 406 PANTHER PTHR10657 30 263 2.0E-13 T 23-04-2016 RD1_RS14350 11f0e16eeb42cd2315b689148f4b90e4 406 Gene3D G3DSA:3.10.50.40 166 267 1.1E-11 T 23-04-2016 RD1_RS14350 11f0e16eeb42cd2315b689148f4b90e4 406 SUPERFAMILY SSF109998 30 191 2.98E-28 T 23-04-2016 IPR027304 Trigger factor/SurA domain RD1_RS17375 63eb2c2ad5ff2c3068d1098902e5ac64 271 Hamap MF_01384 Urease accessory protein UreD [ureD]. 12 261 24.03 T 23-04-2016 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 RD1_RS17375 63eb2c2ad5ff2c3068d1098902e5ac64 271 PANTHER PTHR33643 1 234 4.9E-27 T 23-04-2016 RD1_RS17375 63eb2c2ad5ff2c3068d1098902e5ac64 271 Pfam PF01774 UreD urease accessory protein 52 250 5.7E-38 T 23-04-2016 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 RD1_RS17375 63eb2c2ad5ff2c3068d1098902e5ac64 271 PANTHER PTHR33643:SF1 1 234 4.9E-27 T 23-04-2016 RD1_RS09425 41193c96316597d8e1befb3364f98250 709 Gene3D G3DSA:3.40.50.280 546 705 2.3E-69 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS09425 41193c96316597d8e1befb3364f98250 709 Pfam PF01642 Methylmalonyl-CoA mutase 27 539 7.9E-241 T 23-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 RD1_RS09425 41193c96316597d8e1befb3364f98250 709 PANTHER PTHR23408:SF1 1 685 0.0 T 23-04-2016 RD1_RS09425 41193c96316597d8e1befb3364f98250 709 Gene3D G3DSA:3.20.20.240 25 492 1.4E-211 T 23-04-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 RD1_RS09425 41193c96316597d8e1befb3364f98250 709 SUPERFAMILY SSF51703 4 541 8.63E-228 T 23-04-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 RD1_RS09425 41193c96316597d8e1befb3364f98250 709 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 578 707 1.5E-58 T 23-04-2016 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 RD1_RS09425 41193c96316597d8e1befb3364f98250 709 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 26 546 4.2E-262 T 23-04-2016 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0008152|GO:0031419 RD1_RS09425 41193c96316597d8e1befb3364f98250 709 Pfam PF02310 B12 binding domain 582 694 1.4E-13 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS09425 41193c96316597d8e1befb3364f98250 709 SUPERFAMILY SSF52242 546 706 2.62E-56 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS09425 41193c96316597d8e1befb3364f98250 709 ProSitePatterns PS00544 Methylmalonyl-CoA mutase signature. 369 394 - T 23-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 RD1_RS09425 41193c96316597d8e1befb3364f98250 709 PANTHER PTHR23408 1 685 0.0 T 23-04-2016 RD1_RS17685 8cb76435d5a4b90fa1cf42a5024192cf 355 PANTHER PTHR24220:SF402 8 304 3.5E-132 T 23-04-2016 RD1_RS17685 8cb76435d5a4b90fa1cf42a5024192cf 355 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS17685 8cb76435d5a4b90fa1cf42a5024192cf 355 SMART SM00382 31 214 7.3E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS17685 8cb76435d5a4b90fa1cf42a5024192cf 355 SUPERFAMILY SSF52540 7 245 1.91E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17685 8cb76435d5a4b90fa1cf42a5024192cf 355 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 37 350 1.0E-117 T 23-04-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 RD1_RS17685 8cb76435d5a4b90fa1cf42a5024192cf 355 Pfam PF08402 TOBE domain 273 350 1.2E-13 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS17685 8cb76435d5a4b90fa1cf42a5024192cf 355 Gene3D G3DSA:3.40.50.300 7 237 4.1E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17685 8cb76435d5a4b90fa1cf42a5024192cf 355 SUPERFAMILY SSF50331 242 351 2.61E-10 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS17685 8cb76435d5a4b90fa1cf42a5024192cf 355 Pfam PF00005 ABC transporter 22 164 6.0E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS17685 8cb76435d5a4b90fa1cf42a5024192cf 355 PANTHER PTHR24220 8 304 3.5E-132 T 23-04-2016 RD1_RS07760 f3516c7be703139f9cba584f3937d0ad 329 Gene3D G3DSA:3.40.50.300 51 251 2.1E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07760 f3516c7be703139f9cba584f3937d0ad 329 Gene3D G3DSA:1.20.5.170 2 50 7.5E-17 T 23-04-2016 RD1_RS07760 f3516c7be703139f9cba584f3937d0ad 329 PANTHER PTHR23408:SF17 1 319 3.1E-129 T 23-04-2016 RD1_RS07760 f3516c7be703139f9cba584f3937d0ad 329 SUPERFAMILY SSF52540 4 312 9.66E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07760 f3516c7be703139f9cba584f3937d0ad 329 PANTHER PTHR23408 1 319 3.1E-129 T 23-04-2016 RD1_RS07760 f3516c7be703139f9cba584f3937d0ad 329 Pfam PF03308 ArgK protein 18 288 2.5E-90 T 23-04-2016 RD1_RS07760 f3516c7be703139f9cba584f3937d0ad 329 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 13 317 7.6E-87 T 23-04-2016 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 RD1_RS06345 a39d9fd8104fa63a927626f6a55a0614 119 PANTHER PTHR10245 4 70 9.5E-20 T 23-04-2016 RD1_RS06345 a39d9fd8104fa63a927626f6a55a0614 119 Gene3D G3DSA:1.10.260.40 5 81 7.4E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS06345 a39d9fd8104fa63a927626f6a55a0614 119 PANTHER PTHR10245:SF38 4 70 9.5E-20 T 23-04-2016 RD1_RS06345 a39d9fd8104fa63a927626f6a55a0614 119 SMART SM00530 12 67 8.0E-10 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS06345 a39d9fd8104fa63a927626f6a55a0614 119 Pfam PF12844 Helix-turn-helix domain 10 71 5.2E-11 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS06345 a39d9fd8104fa63a927626f6a55a0614 119 SUPERFAMILY SSF47413 2 74 7.51E-21 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS12910 64927861f8ce8b2cb328e86bca6fa262 216 PANTHER PTHR26402 9 211 6.9E-64 T 23-04-2016 RD1_RS12910 64927861f8ce8b2cb328e86bca6fa262 216 PANTHER PTHR26402:SF151 9 211 6.9E-64 T 23-04-2016 RD1_RS12910 64927861f8ce8b2cb328e86bca6fa262 216 SUPERFAMILY SSF52172 8 131 5.83E-34 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS12910 64927861f8ce8b2cb328e86bca6fa262 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 5.5E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS12910 64927861f8ce8b2cb328e86bca6fa262 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 5.5E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS12910 64927861f8ce8b2cb328e86bca6fa262 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 5.5E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS12910 64927861f8ce8b2cb328e86bca6fa262 216 Gene3D G3DSA:3.40.50.2300 7 152 1.5E-37 T 23-04-2016 RD1_RS12910 64927861f8ce8b2cb328e86bca6fa262 216 Pfam PF00072 Response regulator receiver domain 11 122 2.3E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS12910 64927861f8ce8b2cb328e86bca6fa262 216 SUPERFAMILY SSF46894 145 211 5.1E-21 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RD1_RS12910 64927861f8ce8b2cb328e86bca6fa262 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 205 4.7E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS12910 64927861f8ce8b2cb328e86bca6fa262 216 Gene3D G3DSA:1.10.10.10 153 211 5.3E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS12910 64927861f8ce8b2cb328e86bca6fa262 216 SMART SM00448 9 122 7.9E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS12910 64927861f8ce8b2cb328e86bca6fa262 216 SMART SM00421 148 205 2.1E-21 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS12910 64927861f8ce8b2cb328e86bca6fa262 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS12300 e80347bd5f8c1edb7f632d0d49e540e8 386 Pfam PF01497 Periplasmic binding protein 110 327 1.4E-17 T 23-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 RD1_RS12300 e80347bd5f8c1edb7f632d0d49e540e8 386 Gene3D G3DSA:3.40.50.1980 30 178 6.4E-9 T 23-04-2016 RD1_RS12300 e80347bd5f8c1edb7f632d0d49e540e8 386 Gene3D G3DSA:3.40.50.1980 196 351 2.7E-21 T 23-04-2016 RD1_RS12300 e80347bd5f8c1edb7f632d0d49e540e8 386 PANTHER PTHR30535:SF5 14 277 3.2E-52 T 23-04-2016 RD1_RS12300 e80347bd5f8c1edb7f632d0d49e540e8 386 PANTHER PTHR30535:SF5 293 383 3.2E-52 T 23-04-2016 RD1_RS12300 e80347bd5f8c1edb7f632d0d49e540e8 386 PANTHER PTHR30535 14 277 3.2E-52 T 23-04-2016 RD1_RS12300 e80347bd5f8c1edb7f632d0d49e540e8 386 PANTHER PTHR30535 293 383 3.2E-52 T 23-04-2016 RD1_RS12300 e80347bd5f8c1edb7f632d0d49e540e8 386 SUPERFAMILY SSF53807 35 374 4.71E-42 T 23-04-2016 RD1_RS18365 8ec39569f46445bf2a86c290bc6f02f7 156 Gene3D G3DSA:1.10.455.10 7 156 2.1E-67 T 23-04-2016 IPR023798 Ribosomal protein S7 domain RD1_RS18365 8ec39569f46445bf2a86c290bc6f02f7 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.3E-69 T 23-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RD1_RS18365 8ec39569f46445bf2a86c290bc6f02f7 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 2.3E-66 T 23-04-2016 IPR023798 Ribosomal protein S7 domain RD1_RS18365 8ec39569f46445bf2a86c290bc6f02f7 156 SUPERFAMILY SSF47973 4 149 6.15E-61 T 23-04-2016 IPR023798 Ribosomal protein S7 domain RD1_RS18365 8ec39569f46445bf2a86c290bc6f02f7 156 PANTHER PTHR11205 1 156 1.4E-86 T 23-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 RD1_RS18365 8ec39569f46445bf2a86c290bc6f02f7 156 PIRSF PIRSF002122 2 156 3.1E-61 T 23-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 RD1_RS18365 8ec39569f46445bf2a86c290bc6f02f7 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 36.04 T 23-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RD1_RS18365 8ec39569f46445bf2a86c290bc6f02f7 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 23-04-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 RD1_RS17780 74c74069a8b197d065c0ebbb5f3ba393 486 Pfam PF01547 Bacterial extracellular solute-binding protein 35 396 4.0E-12 T 23-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 RD1_RS17780 74c74069a8b197d065c0ebbb5f3ba393 486 SUPERFAMILY SSF53850 21 481 1.52E-42 T 23-04-2016 RD1_RS17780 74c74069a8b197d065c0ebbb5f3ba393 486 Gene3D G3DSA:3.40.190.10 174 415 2.0E-27 T 23-04-2016 RD1_RS17780 74c74069a8b197d065c0ebbb5f3ba393 486 PANTHER PTHR30061:SF3 156 486 2.0E-24 T 23-04-2016 RD1_RS17780 74c74069a8b197d065c0ebbb5f3ba393 486 PANTHER PTHR30061:SF3 1 137 2.0E-24 T 23-04-2016 RD1_RS17780 74c74069a8b197d065c0ebbb5f3ba393 486 PANTHER PTHR30061 156 486 2.0E-24 T 23-04-2016 RD1_RS17780 74c74069a8b197d065c0ebbb5f3ba393 486 PANTHER PTHR30061 1 137 2.0E-24 T 23-04-2016 RD1_RS17780 74c74069a8b197d065c0ebbb5f3ba393 486 Gene3D G3DSA:3.40.190.10 58 173 2.9E-6 T 23-04-2016 RD1_RS12830 553e66f8402e7b776f3c06f5ab55b367 151 Gene3D G3DSA:3.40.630.30 6 142 6.1E-33 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS12830 553e66f8402e7b776f3c06f5ab55b367 151 PANTHER PTHR10545:SF39 6 148 3.2E-51 T 23-04-2016 IPR032962 Acetyltransferase HPA2/HPA3 GO:0016746 RD1_RS12830 553e66f8402e7b776f3c06f5ab55b367 151 SUPERFAMILY SSF55729 7 140 1.06E-30 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS12830 553e66f8402e7b776f3c06f5ab55b367 151 Pfam PF00583 Acetyltransferase (GNAT) family 61 140 3.3E-13 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS12830 553e66f8402e7b776f3c06f5ab55b367 151 PANTHER PTHR10545 6 148 3.2E-51 T 23-04-2016 RD1_RS03105 3b648b0cbb939e623d76e44be6ff47fc 502 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 104 500 3.2E-163 T 23-04-2016 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 RD1_RS03105 3b648b0cbb939e623d76e44be6ff47fc 502 SMART SM00858 10 77 5.5E-15 T 23-04-2016 IPR013974 SAF domain RD1_RS03105 3b648b0cbb939e623d76e44be6ff47fc 502 Pfam PF08666 SAF domain 10 77 1.0E-10 T 23-04-2016 IPR013974 SAF domain RD1_RS03105 3b648b0cbb939e623d76e44be6ff47fc 502 PANTHER PTHR30536 1 502 3.7E-204 T 23-04-2016 RD1_RS03105 3b648b0cbb939e623d76e44be6ff47fc 502 PANTHER PTHR30536:SF5 1 502 3.7E-204 T 23-04-2016 RD1_RS00030 81435f8f3870f8be9f480af0a7ba4186 215 Gene3D G3DSA:1.10.260.40 28 101 6.5E-22 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS00030 81435f8f3870f8be9f480af0a7ba4186 215 SUPERFAMILY SSF47413 29 96 8.73E-18 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS00030 81435f8f3870f8be9f480af0a7ba4186 215 Pfam PF07883 Cupin domain 142 208 5.4E-10 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RD1_RS00030 81435f8f3870f8be9f480af0a7ba4186 215 PANTHER PTHR10245:SF53 2 210 1.2E-34 T 23-04-2016 RD1_RS00030 81435f8f3870f8be9f480af0a7ba4186 215 PANTHER PTHR10245 2 210 1.2E-34 T 23-04-2016 RD1_RS00030 81435f8f3870f8be9f480af0a7ba4186 215 SMART SM00530 34 89 1.3E-15 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS00030 81435f8f3870f8be9f480af0a7ba4186 215 Gene3D G3DSA:2.60.120.10 118 213 5.4E-25 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS00030 81435f8f3870f8be9f480af0a7ba4186 215 Pfam PF01381 Helix-turn-helix 35 87 8.4E-15 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS00030 81435f8f3870f8be9f480af0a7ba4186 215 SUPERFAMILY SSF51182 96 209 1.75E-23 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS15915 af8e3679d52d8a94d60a7568cd6a70de 445 SMART SM00387 341 444 5.7E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS15915 af8e3679d52d8a94d60a7568cd6a70de 445 Gene3D G3DSA:1.10.287.130 230 292 1.5E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS15915 af8e3679d52d8a94d60a7568cd6a70de 445 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 344 440 1.7E-10 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS15915 af8e3679d52d8a94d60a7568cd6a70de 445 SUPERFAMILY SSF55874 295 441 7.86E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS15915 af8e3679d52d8a94d60a7568cd6a70de 445 PANTHER PTHR24423 3 20 1.2E-39 T 23-04-2016 RD1_RS15915 af8e3679d52d8a94d60a7568cd6a70de 445 PANTHER PTHR24423 179 441 1.2E-39 T 23-04-2016 RD1_RS15915 af8e3679d52d8a94d60a7568cd6a70de 445 Gene3D G3DSA:3.30.565.10 302 441 1.1E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS15915 af8e3679d52d8a94d60a7568cd6a70de 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 388 6.5E-8 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS15915 af8e3679d52d8a94d60a7568cd6a70de 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 443 6.5E-8 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS15915 af8e3679d52d8a94d60a7568cd6a70de 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 424 6.5E-8 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS15915 af8e3679d52d8a94d60a7568cd6a70de 445 SUPERFAMILY SSF47384 221 294 6.28E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS10210 b4a323070e168ef9a3dd02e81b14be69 257 PANTHER PTHR24220 6 227 8.1E-71 T 23-04-2016 RD1_RS10210 b4a323070e168ef9a3dd02e81b14be69 257 Gene3D G3DSA:3.40.50.300 2 245 6.5E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10210 b4a323070e168ef9a3dd02e81b14be69 257 PANTHER PTHR24220:SF575 6 227 8.1E-71 T 23-04-2016 RD1_RS10210 b4a323070e168ef9a3dd02e81b14be69 257 SMART SM00382 29 234 6.9E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS10210 b4a323070e168ef9a3dd02e81b14be69 257 Pfam PF00005 ABC transporter 20 178 8.1E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS10210 b4a323070e168ef9a3dd02e81b14be69 257 SUPERFAMILY SSF52540 3 235 1.09E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12920 4ed134f9a0d79fd4aab6b29e68e288a1 583 PANTHER PTHR18968 3 566 4.4E-304 T 23-04-2016 RD1_RS12920 4ed134f9a0d79fd4aab6b29e68e288a1 583 Gene3D G3DSA:3.40.50.970 357 558 1.9E-69 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS12920 4ed134f9a0d79fd4aab6b29e68e288a1 583 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 169 4.1E-57 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RD1_RS12920 4ed134f9a0d79fd4aab6b29e68e288a1 583 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 194 329 5.2E-39 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RD1_RS12920 4ed134f9a0d79fd4aab6b29e68e288a1 583 SUPERFAMILY SSF52518 2 179 1.01E-64 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS12920 4ed134f9a0d79fd4aab6b29e68e288a1 583 SUPERFAMILY SSF52518 372 568 6.09E-65 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS12920 4ed134f9a0d79fd4aab6b29e68e288a1 583 Gene3D G3DSA:3.40.50.970 4 178 1.8E-75 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS12920 4ed134f9a0d79fd4aab6b29e68e288a1 583 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 5 565 7.8E-232 T 23-04-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS12920 4ed134f9a0d79fd4aab6b29e68e288a1 583 Gene3D G3DSA:3.40.50.1220 188 356 1.3E-56 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS12920 4ed134f9a0d79fd4aab6b29e68e288a1 583 PANTHER PTHR18968:SF116 3 566 4.4E-304 T 23-04-2016 RD1_RS12920 4ed134f9a0d79fd4aab6b29e68e288a1 583 SUPERFAMILY SSF52467 187 361 2.7E-60 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS12920 4ed134f9a0d79fd4aab6b29e68e288a1 583 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 396 543 1.2E-46 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RD1_RS00795 e22edad5641f138b0bbfe07d80349503 219 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 68 7.2E-12 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS00795 e22edad5641f138b0bbfe07d80349503 219 SMART SM00895 80 203 1.9E-11 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS00795 e22edad5641f138b0bbfe07d80349503 219 Gene3D G3DSA:1.10.10.10 7 70 2.6E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS00795 e22edad5641f138b0bbfe07d80349503 219 Pfam PF07729 FCD domain 81 201 2.8E-19 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS00795 e22edad5641f138b0bbfe07d80349503 219 SUPERFAMILY SSF48008 78 204 2.28E-19 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS00795 e22edad5641f138b0bbfe07d80349503 219 SUPERFAMILY SSF46785 6 74 2.56E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS00795 e22edad5641f138b0bbfe07d80349503 219 Gene3D G3DSA:1.20.120.530 77 213 3.8E-18 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS02560 dc2f99f7b754c043bce75a2277e39af8 170 ProSitePatterns PS01117 MarR-type HTH domain signature. 82 116 - T 23-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site RD1_RS02560 dc2f99f7b754c043bce75a2277e39af8 170 Gene3D G3DSA:1.10.10.10 21 155 6.3E-30 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS02560 dc2f99f7b754c043bce75a2277e39af8 170 SUPERFAMILY SSF46785 23 157 9.95E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS02560 dc2f99f7b754c043bce75a2277e39af8 170 Pfam PF12802 MarR family 52 107 2.7E-12 T 23-04-2016 RD1_RS02560 dc2f99f7b754c043bce75a2277e39af8 170 SMART SM00347 43 143 6.1E-17 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS18320 f3126ccb9af05386447ffbb80d74b308 171 Pfam PF01475 Ferric uptake regulator family 40 157 9.9E-6 T 23-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RD1_RS18320 f3126ccb9af05386447ffbb80d74b308 171 Gene3D G3DSA:1.10.10.10 33 100 7.1E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18320 f3126ccb9af05386447ffbb80d74b308 171 SUPERFAMILY SSF46785 33 163 1.16E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18320 f3126ccb9af05386447ffbb80d74b308 171 PANTHER PTHR33202 20 170 5.6E-51 T 23-04-2016 RD1_RS18320 f3126ccb9af05386447ffbb80d74b308 171 PANTHER PTHR33202:SF6 20 170 5.6E-51 T 23-04-2016 RD1_RS14165 babcac8d6ba6cf53f2f0afb32fe4c9eb 270 PANTHER PTHR30363:SF4 1 255 5.8E-59 T 23-04-2016 RD1_RS14165 babcac8d6ba6cf53f2f0afb32fe4c9eb 270 Gene3D G3DSA:3.40.50.1360 80 226 2.8E-11 T 23-04-2016 RD1_RS14165 babcac8d6ba6cf53f2f0afb32fe4c9eb 270 PANTHER PTHR30363 1 255 5.8E-59 T 23-04-2016 RD1_RS14165 babcac8d6ba6cf53f2f0afb32fe4c9eb 270 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 3.3E-13 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RD1_RS14165 babcac8d6ba6cf53f2f0afb32fe4c9eb 270 SMART SM01134 77 236 3.0E-49 T 23-04-2016 RD1_RS14165 babcac8d6ba6cf53f2f0afb32fe4c9eb 270 SUPERFAMILY SSF46785 4 60 2.1E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS14165 babcac8d6ba6cf53f2f0afb32fe4c9eb 270 SUPERFAMILY SSF100950 79 236 7.64E-28 T 23-04-2016 RD1_RS14165 babcac8d6ba6cf53f2f0afb32fe4c9eb 270 SMART SM00420 6 58 9.2E-14 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RD1_RS14165 babcac8d6ba6cf53f2f0afb32fe4c9eb 270 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 23-04-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RD1_RS14165 babcac8d6ba6cf53f2f0afb32fe4c9eb 270 Gene3D G3DSA:1.10.10.10 1 55 1.8E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS14165 babcac8d6ba6cf53f2f0afb32fe4c9eb 270 Pfam PF00455 DeoR C terminal sensor domain 79 234 4.1E-42 T 23-04-2016 IPR014036 DeoR C-terminal sensor domain RD1_RS14165 babcac8d6ba6cf53f2f0afb32fe4c9eb 270 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 3.0E-5 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RD1_RS14165 babcac8d6ba6cf53f2f0afb32fe4c9eb 270 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 3.0E-5 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 Gene3D G3DSA:1.10.260.30 328 433 2.1E-35 T 23-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 430 4.9E-173 T 23-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 1.2E-19 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 SMART SM00382 100 302 1.2E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 PANTHER PTHR11564:SF7 1 435 5.5E-220 T 23-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 PANTHER PTHR11564 1 435 5.5E-220 T 23-04-2016 RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 Pfam PF02978 Signal peptide binding domain 329 428 4.9E-28 T 23-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 448 32.424 T 23-04-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 Pfam PF00448 SRP54-type protein, GTPase domain 102 297 3.7E-66 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 SMART SM00962 101 297 4.0E-102 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 270 283 - T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 Gene3D G3DSA:1.20.120.140 2 89 6.1E-33 T 23-04-2016 RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 SMART SM00963 1 86 1.3E-32 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 SUPERFAMILY SSF47446 328 432 9.32E-34 T 23-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 Gene3D G3DSA:3.40.50.300 96 298 6.4E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06070 219286df62efb9cfee2af5efb1050144 505 SUPERFAMILY SSF52540 42 355 1.94E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06880 a3b3e151a112d3c397999135d1241f1d 343 SUPERFAMILY SSF53822 64 325 4.5E-45 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS06880 a3b3e151a112d3c397999135d1241f1d 343 Pfam PF13377 Periplasmic binding protein-like domain 192 342 9.1E-20 T 23-04-2016 RD1_RS06880 a3b3e151a112d3c397999135d1241f1d 343 Gene3D G3DSA:3.40.50.2300 172 342 1.4E-31 T 23-04-2016 RD1_RS06880 a3b3e151a112d3c397999135d1241f1d 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 53 2.1E-9 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS06880 a3b3e151a112d3c397999135d1241f1d 343 Gene3D G3DSA:1.10.260.40 8 58 2.8E-13 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS06880 a3b3e151a112d3c397999135d1241f1d 343 Gene3D G3DSA:3.40.50.2300 59 171 1.1E-28 T 23-04-2016 RD1_RS06880 a3b3e151a112d3c397999135d1241f1d 343 PANTHER PTHR30146 8 342 1.2E-68 T 23-04-2016 RD1_RS06880 a3b3e151a112d3c397999135d1241f1d 343 SUPERFAMILY SSF47413 6 58 8.0E-11 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS06880 a3b3e151a112d3c397999135d1241f1d 343 SMART SM00354 8 76 1.8E-9 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS16190 5377fddffc9fa1f9966764eb9e8d91ae 222 Pfam PF09929 Putative PD-(D/E)XK phosphodiesterase (DUF2161) 97 212 1.4E-41 T 23-04-2016 IPR018679 Putative PD-(D/E)XK phosphodiesterase (DUF2161) RD1_RS01825 5ba82da24abbd49d44fab456b50b4e0c 323 PIRSF PIRSF006431 9 323 3.8E-135 T 23-04-2016 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 RD1_RS01825 5ba82da24abbd49d44fab456b50b4e0c 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 130 143 5.5E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS01825 5ba82da24abbd49d44fab456b50b4e0c 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 70 85 5.5E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS01825 5ba82da24abbd49d44fab456b50b4e0c 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 116 129 5.5E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS01825 5ba82da24abbd49d44fab456b50b4e0c 323 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 19 319 3.2E-118 T 23-04-2016 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 RD1_RS01825 5ba82da24abbd49d44fab456b50b4e0c 323 Pfam PF00561 alpha/beta hydrolase fold 46 304 9.4E-29 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS01825 5ba82da24abbd49d44fab456b50b4e0c 323 PANTHER PTHR10992 1 184 4.8E-110 T 23-04-2016 RD1_RS01825 5ba82da24abbd49d44fab456b50b4e0c 323 PANTHER PTHR10992 220 320 4.8E-110 T 23-04-2016 RD1_RS01825 5ba82da24abbd49d44fab456b50b4e0c 323 SUPERFAMILY SSF53474 11 304 3.65E-60 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS01825 5ba82da24abbd49d44fab456b50b4e0c 323 PANTHER PTHR10992:SF860 1 184 4.8E-110 T 23-04-2016 RD1_RS01825 5ba82da24abbd49d44fab456b50b4e0c 323 PANTHER PTHR10992:SF860 220 320 4.8E-110 T 23-04-2016 RD1_RS01825 5ba82da24abbd49d44fab456b50b4e0c 323 Gene3D G3DSA:3.40.50.1820 18 306 7.4E-69 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS01825 5ba82da24abbd49d44fab456b50b4e0c 323 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 73 84 1.1E-13 T 23-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RD1_RS01825 5ba82da24abbd49d44fab456b50b4e0c 323 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 116 130 1.1E-13 T 23-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RD1_RS01825 5ba82da24abbd49d44fab456b50b4e0c 323 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 47 55 1.1E-13 T 23-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RD1_RS10275 95228fc9375de745b9910ca98e37918a 526 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 66 441 5.2E-80 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain RD1_RS10275 95228fc9375de745b9910ca98e37918a 526 SUPERFAMILY SSF53850 17 508 1.27E-120 T 23-04-2016 RD1_RS10275 95228fc9375de745b9910ca98e37918a 526 Gene3D G3DSA:3.10.105.10 305 498 9.9E-43 T 23-04-2016 RD1_RS10275 95228fc9375de745b9910ca98e37918a 526 PANTHER PTHR30290:SF24 11 508 2.6E-111 T 23-04-2016 RD1_RS10275 95228fc9375de745b9910ca98e37918a 526 PANTHER PTHR30290 11 508 2.6E-111 T 23-04-2016 RD1_RS10275 95228fc9375de745b9910ca98e37918a 526 Gene3D G3DSA:3.40.190.10 191 304 4.5E-31 T 23-04-2016 RD1_RS10275 95228fc9375de745b9910ca98e37918a 526 PIRSF PIRSF002741 15 517 1.5E-77 T 23-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RD1_RS10275 95228fc9375de745b9910ca98e37918a 526 Gene3D G3DSA:3.90.76.10 35 190 5.4E-36 T 23-04-2016 RD1_RS11965 6643666d8dd4772cae2fe180eac2b357 380 Gene3D G3DSA:2.40.30.10 296 379 4.2E-20 T 23-04-2016 RD1_RS11965 6643666d8dd4772cae2fe180eac2b357 380 SUPERFAMILY SSF52402 21 264 9.26E-48 T 23-04-2016 RD1_RS11965 6643666d8dd4772cae2fe180eac2b357 380 Gene3D G3DSA:3.40.50.620 17 229 4.5E-78 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS11965 6643666d8dd4772cae2fe180eac2b357 380 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 21 378 38.9 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RD1_RS11965 6643666d8dd4772cae2fe180eac2b357 380 Gene3D G3DSA:2.30.30.280 236 292 4.4E-19 T 23-04-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 RD1_RS11965 6643666d8dd4772cae2fe180eac2b357 380 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 22 377 2.3E-95 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RD1_RS11965 6643666d8dd4772cae2fe180eac2b357 380 PANTHER PTHR11933 20 377 1.1E-150 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RD1_RS11965 6643666d8dd4772cae2fe180eac2b357 380 Pfam PF03054 tRNA methyl transferase 22 377 1.1E-109 T 23-04-2016 RD1_RS11965 6643666d8dd4772cae2fe180eac2b357 380 PANTHER PTHR11933:SF10 20 377 1.1E-150 T 23-04-2016 RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 552 43.977 T 23-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 PRINTS PR00702 Acriflavin resistance protein family signature 516 539 5.9E-6 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 PRINTS PR00702 Acriflavin resistance protein family signature 441 465 5.9E-6 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 PRINTS PR00702 Acriflavin resistance protein family signature 388 411 5.9E-6 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 69 539 4.4E-147 T 23-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 Pfam PF02355 Protein export membrane protein 376 542 7.4E-21 T 23-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 Gene3D G3DSA:1.20.1640.10 349 550 2.8E-31 T 23-04-2016 RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 SUPERFAMILY SSF82866 349 548 2.22E-46 T 23-04-2016 RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 SUPERFAMILY SSF82866 288 306 2.22E-46 T 23-04-2016 RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 PANTHER PTHR30081 57 119 7.6E-143 T 23-04-2016 RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 PANTHER PTHR30081 182 240 7.6E-143 T 23-04-2016 RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 PANTHER PTHR30081 270 552 7.6E-143 T 23-04-2016 RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 PANTHER PTHR30081:SF1 57 119 7.6E-143 T 23-04-2016 RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 PANTHER PTHR30081:SF1 182 240 7.6E-143 T 23-04-2016 RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 PANTHER PTHR30081:SF1 270 552 7.6E-143 T 23-04-2016 RD1_RS11720 0014df401aac353fe2a059653d998a1e 553 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 302 532 3.3E-81 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RD1_RS02050 c46dd2d7a8ebf5ab79604ecc564e66ca 228 Gene3D G3DSA:3.30.420.10 1 172 2.7E-67 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS02050 c46dd2d7a8ebf5ab79604ecc564e66ca 228 PANTHER PTHR30231 1 225 1.8E-84 T 23-04-2016 RD1_RS02050 c46dd2d7a8ebf5ab79604ecc564e66ca 228 Pfam PF00929 Exonuclease 4 163 5.1E-36 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RD1_RS02050 c46dd2d7a8ebf5ab79604ecc564e66ca 228 PANTHER PTHR30231:SF0 1 225 1.8E-84 T 23-04-2016 RD1_RS02050 c46dd2d7a8ebf5ab79604ecc564e66ca 228 SMART SM00479 2 172 6.9E-48 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RD1_RS02050 c46dd2d7a8ebf5ab79604ecc564e66ca 228 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 225 3.9E-83 T 23-04-2016 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS02050 c46dd2d7a8ebf5ab79604ecc564e66ca 228 SUPERFAMILY SSF53098 1 169 5.18E-54 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS02050 c46dd2d7a8ebf5ab79604ecc564e66ca 228 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 3 171 1.1E-49 T 23-04-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS15365 bf211e0ec50fbbf9ad81e3f7ecf08f7c 549 Pfam PF02463 RecF/RecN/SMC N terminal domain 5 501 5.6E-14 T 23-04-2016 IPR003395 RecF/RecN/SMC, N-terminal RD1_RS15365 bf211e0ec50fbbf9ad81e3f7ecf08f7c 549 Gene3D G3DSA:3.40.50.300 1 206 1.9E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15365 bf211e0ec50fbbf9ad81e3f7ecf08f7c 549 PIRSF PIRSF003128 1 549 2.9E-152 T 23-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RD1_RS15365 bf211e0ec50fbbf9ad81e3f7ecf08f7c 549 PANTHER PTHR11059 2 548 2.5E-143 T 23-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RD1_RS15365 bf211e0ec50fbbf9ad81e3f7ecf08f7c 549 SUPERFAMILY SSF52540 1 216 5.99E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15365 bf211e0ec50fbbf9ad81e3f7ecf08f7c 549 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 547 3.4E-144 T 23-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RD1_RS15365 bf211e0ec50fbbf9ad81e3f7ecf08f7c 549 SUPERFAMILY SSF52540 5 50 1.84E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15365 bf211e0ec50fbbf9ad81e3f7ecf08f7c 549 SUPERFAMILY SSF52540 302 502 1.84E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15365 bf211e0ec50fbbf9ad81e3f7ecf08f7c 549 Gene3D G3DSA:3.40.50.300 354 392 1.1E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15365 bf211e0ec50fbbf9ad81e3f7ecf08f7c 549 Gene3D G3DSA:3.40.50.300 427 494 1.1E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01005 60bf05b7e3c12678702a3f3626962d6a 331 PANTHER PTHR22604 2 328 2.0E-100 T 23-04-2016 RD1_RS01005 60bf05b7e3c12678702a3f3626962d6a 331 PANTHER PTHR22604:SF92 2 328 2.0E-100 T 23-04-2016 RD1_RS01005 60bf05b7e3c12678702a3f3626962d6a 331 SUPERFAMILY SSF51735 2 141 6.4E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS01005 60bf05b7e3c12678702a3f3626962d6a 331 TIGRFAM TIGR04380 myo_inos_iolG: inositol 2-dehydrogenase 1 327 6.3E-128 T 23-04-2016 IPR030827 Inositol 2-dehydrogenase RD1_RS01005 60bf05b7e3c12678702a3f3626962d6a 331 Gene3D G3DSA:3.30.360.10 132 328 2.3E-56 T 23-04-2016 RD1_RS01005 60bf05b7e3c12678702a3f3626962d6a 331 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 117 1.0E-21 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RD1_RS01005 60bf05b7e3c12678702a3f3626962d6a 331 SUPERFAMILY SSF55347 124 286 4.25E-31 T 23-04-2016 RD1_RS01005 60bf05b7e3c12678702a3f3626962d6a 331 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 161 235 1.3E-6 T 23-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS01005 60bf05b7e3c12678702a3f3626962d6a 331 Gene3D G3DSA:3.40.50.720 1 131 1.5E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13095 71e9690332400c6df9ea3e879387d3fe 254 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 230 248 1.3E-4 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD1_RS13095 71e9690332400c6df9ea3e879387d3fe 254 PANTHER PTHR24220 5 249 1.1E-95 T 23-04-2016 RD1_RS13095 71e9690332400c6df9ea3e879387d3fe 254 Gene3D G3DSA:3.40.50.300 2 248 2.0E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13095 71e9690332400c6df9ea3e879387d3fe 254 PANTHER PTHR24220:SF358 5 249 1.1E-95 T 23-04-2016 RD1_RS13095 71e9690332400c6df9ea3e879387d3fe 254 SMART SM00382 28 226 3.2E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS13095 71e9690332400c6df9ea3e879387d3fe 254 Pfam PF00005 ABC transporter 20 177 3.7E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS13095 71e9690332400c6df9ea3e879387d3fe 254 SUPERFAMILY SSF52540 3 249 3.26E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12265 7eaf99733d31c33a4279add5a688309f 216 SUPERFAMILY SSF141091 1 101 2.35E-33 T 23-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 RD1_RS12265 7eaf99733d31c33a4279add5a688309f 216 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 1.3E-34 T 23-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 RD1_RS12265 7eaf99733d31c33a4279add5a688309f 216 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 5.3E-31 T 23-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS12265 7eaf99733d31c33a4279add5a688309f 216 Gene3D G3DSA:1.10.150.20 152 192 3.4E-6 T 23-04-2016 RD1_RS12265 7eaf99733d31c33a4279add5a688309f 216 PANTHER PTHR21349 1 123 4.3E-41 T 23-04-2016 RD1_RS12265 7eaf99733d31c33a4279add5a688309f 216 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 25.564 T 23-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS09220 d0f394762c8ea51dc869434ec8a1dbb5 229 SUPERFAMILY SSF56281 1 218 4.48E-32 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS09220 d0f394762c8ea51dc869434ec8a1dbb5 229 SMART SM00849 7 195 5.8E-12 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS09220 d0f394762c8ea51dc869434ec8a1dbb5 229 PANTHER PTHR15032 1 226 2.1E-40 T 23-04-2016 RD1_RS09220 d0f394762c8ea51dc869434ec8a1dbb5 229 PANTHER PTHR15032:SF13 1 226 2.1E-40 T 23-04-2016 RD1_RS09220 d0f394762c8ea51dc869434ec8a1dbb5 229 Gene3D G3DSA:3.60.15.10 1 215 5.4E-46 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS09220 d0f394762c8ea51dc869434ec8a1dbb5 229 Pfam PF13483 Beta-lactamase superfamily domain 2 195 4.3E-18 T 23-04-2016 RD1_RS09220 d0f394762c8ea51dc869434ec8a1dbb5 229 Hamap MF_00457 UPF0173 metal-dependent hydrolase . 1 227 30.817 T 23-04-2016 IPR022877 Protein of unknown funcion UPF0173 RD1_RS14910 f1fe04461dd27abe33088927999e2995 211 Pfam PF00106 short chain dehydrogenase 3 187 4.5E-26 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14910 f1fe04461dd27abe33088927999e2995 211 Gene3D G3DSA:3.40.50.720 3 197 8.4E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS14910 f1fe04461dd27abe33088927999e2995 211 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 7.3E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14910 f1fe04461dd27abe33088927999e2995 211 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 7.3E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14910 f1fe04461dd27abe33088927999e2995 211 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 7.3E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14910 f1fe04461dd27abe33088927999e2995 211 SUPERFAMILY SSF51735 3 208 1.36E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS14910 f1fe04461dd27abe33088927999e2995 211 PANTHER PTHR24322 7 179 3.7E-18 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03055 c0305fc7cafc623146a7536c5016eecb 411 Pfam PF02646 RmuC family 118 393 9.1E-64 T 23-04-2016 IPR003798 DNA recombination RmuC RD1_RS03055 c0305fc7cafc623146a7536c5016eecb 411 SUPERFAMILY SSF58113 42 162 9.42E-5 T 23-04-2016 RD1_RS03055 c0305fc7cafc623146a7536c5016eecb 411 PANTHER PTHR30563 87 405 3.9E-75 T 23-04-2016 RD1_RS08485 bbb2b53b463270082177c86c03910067 319 Gene3D G3DSA:3.40.190.100 110 243 2.4E-32 T 23-04-2016 RD1_RS08485 bbb2b53b463270082177c86c03910067 319 Gene3D G3DSA:3.40.190.10 252 317 5.9E-27 T 23-04-2016 RD1_RS08485 bbb2b53b463270082177c86c03910067 319 Gene3D G3DSA:3.40.190.10 21 109 5.9E-27 T 23-04-2016 RD1_RS08485 bbb2b53b463270082177c86c03910067 319 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 24 307 1.7E-51 T 23-04-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 RD1_RS08485 bbb2b53b463270082177c86c03910067 319 SUPERFAMILY SSF53850 17 317 1.41E-59 T 23-04-2016 RD1_RS08485 bbb2b53b463270082177c86c03910067 319 PANTHER PTHR30177 9 237 5.1E-16 T 23-04-2016 RD1_RS08485 bbb2b53b463270082177c86c03910067 319 PANTHER PTHR30177 255 312 5.1E-16 T 23-04-2016 RD1_RS12705 cb8a57c1ab2e6ea87dab1d4bd61d5e6c 164 SUPERFAMILY SSF101307 3 156 2.35E-35 T 23-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 RD1_RS12705 cb8a57c1ab2e6ea87dab1d4bd61d5e6c 164 PANTHER PTHR36305 1 162 2.1E-36 T 23-04-2016 RD1_RS12705 cb8a57c1ab2e6ea87dab1d4bd61d5e6c 164 PIRSF PIRSF006162 1 163 6.9E-43 T 23-04-2016 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RD1_RS12705 cb8a57c1ab2e6ea87dab1d4bd61d5e6c 164 Pfam PF04608 Phosphatidylglycerophosphatase A 6 155 4.8E-47 T 23-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 RD1_RS04615 2d1342fce3d4ae65ffeaf3cdd356a815 333 SUPERFAMILY SSF52540 2 331 1.62E-109 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04615 2d1342fce3d4ae65ffeaf3cdd356a815 333 Pfam PF07755 Protein of unknown function (DUF1611) 38 326 1.5E-109 T 23-04-2016 IPR011669 Protein of unknown function DUF1611 RD1_RS04615 2d1342fce3d4ae65ffeaf3cdd356a815 333 PIRSF PIRSF026760 2 333 9.5E-97 T 23-04-2016 IPR011669 Protein of unknown function DUF1611 RD1_RS04615 2d1342fce3d4ae65ffeaf3cdd356a815 333 Gene3D G3DSA:3.40.50.300 127 330 4.3E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04615 2d1342fce3d4ae65ffeaf3cdd356a815 333 Gene3D G3DSA:3.40.50.720 1 126 2.3E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS04615 2d1342fce3d4ae65ffeaf3cdd356a815 333 PANTHER PTHR40690 51 333 9.3E-73 T 23-04-2016 RD1_RS04615 2d1342fce3d4ae65ffeaf3cdd356a815 333 PANTHER PTHR40690:SF1 51 333 9.3E-73 T 23-04-2016 RD1_RS17900 61e8b726f0a2ee7952c021761f02dbb1 94 PANTHER PTHR33175:SF5 1 91 2.5E-40 T 23-04-2016 RD1_RS17900 61e8b726f0a2ee7952c021761f02dbb1 94 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 93 1.5E-48 T 23-04-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 RD1_RS17900 61e8b726f0a2ee7952c021761f02dbb1 94 SUPERFAMILY SSF47729 1 92 5.0E-30 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RD1_RS17900 61e8b726f0a2ee7952c021761f02dbb1 94 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 29.285 T 23-04-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 RD1_RS17900 61e8b726f0a2ee7952c021761f02dbb1 94 Pfam PF00216 Bacterial DNA-binding protein 1 91 8.4E-31 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RD1_RS17900 61e8b726f0a2ee7952c021761f02dbb1 94 SMART SM00411 1 91 1.4E-42 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RD1_RS17900 61e8b726f0a2ee7952c021761f02dbb1 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 6.6E-18 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RD1_RS17900 61e8b726f0a2ee7952c021761f02dbb1 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 6.6E-18 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RD1_RS17900 61e8b726f0a2ee7952c021761f02dbb1 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 6.6E-18 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RD1_RS17900 61e8b726f0a2ee7952c021761f02dbb1 94 PANTHER PTHR33175 1 91 2.5E-40 T 23-04-2016 RD1_RS17900 61e8b726f0a2ee7952c021761f02dbb1 94 Gene3D G3DSA:4.10.520.10 1 92 1.1E-32 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RD1_RS17900 61e8b726f0a2ee7952c021761f02dbb1 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 23-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RD1_RS19190 90450319289337e7972cccb9ed5508ed 705 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 29 676 4.8E-136 T 23-04-2016 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 RD1_RS19190 90450319289337e7972cccb9ed5508ed 705 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 32 676 1.9E-104 T 23-04-2016 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 RD1_RS19190 90450319289337e7972cccb9ed5508ed 705 Gene3D G3DSA:2.40.170.20 145 676 1.0E-87 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RD1_RS19190 90450319289337e7972cccb9ed5508ed 705 PANTHER PTHR32552 1 439 1.5E-63 T 23-04-2016 RD1_RS19190 90450319289337e7972cccb9ed5508ed 705 PANTHER PTHR32552 459 676 1.5E-63 T 23-04-2016 RD1_RS19190 90450319289337e7972cccb9ed5508ed 705 SUPERFAMILY SSF56935 13 434 1.59E-109 T 23-04-2016 RD1_RS19190 90450319289337e7972cccb9ed5508ed 705 SUPERFAMILY SSF56935 462 676 1.59E-109 T 23-04-2016 RD1_RS19190 90450319289337e7972cccb9ed5508ed 705 Gene3D G3DSA:2.170.130.10 34 144 7.1E-30 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RD1_RS19190 90450319289337e7972cccb9ed5508ed 705 Pfam PF07715 TonB-dependent Receptor Plug Domain 36 140 6.1E-21 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RD1_RS19190 90450319289337e7972cccb9ed5508ed 705 Pfam PF00593 TonB dependent receptor 405 673 2.7E-34 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RD1_RS10465 625de1959fc9e0920a979173af97e358 919 Hamap MF_00970 Ribonuclease E [rne]. 2 918 32.281 T 23-04-2016 IPR028878 Ribonuclease E GO:0006396|GO:0008995 RD1_RS10465 625de1959fc9e0920a979173af97e358 919 PANTHER PTHR30001:SF1 233 912 5.0E-245 T 23-04-2016 RD1_RS10465 625de1959fc9e0920a979173af97e358 919 PANTHER PTHR30001:SF1 1 120 5.0E-245 T 23-04-2016 RD1_RS10465 625de1959fc9e0920a979173af97e358 919 PANTHER PTHR30001 233 912 5.0E-245 T 23-04-2016 RD1_RS10465 625de1959fc9e0920a979173af97e358 919 PANTHER PTHR30001 1 120 5.0E-245 T 23-04-2016 RD1_RS10465 625de1959fc9e0920a979173af97e358 919 Gene3D G3DSA:2.40.50.140 250 292 1.6E-41 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS10465 625de1959fc9e0920a979173af97e358 919 Gene3D G3DSA:2.40.50.140 31 83 1.6E-41 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS10465 625de1959fc9e0920a979173af97e358 919 Pfam PF10150 Ribonuclease E/G family 288 558 1.6E-94 T 23-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 RD1_RS10465 625de1959fc9e0920a979173af97e358 919 SUPERFAMILY SSF50249 248 292 7.26E-16 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS10465 625de1959fc9e0920a979173af97e358 919 SUPERFAMILY SSF50249 40 81 7.26E-16 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS10465 625de1959fc9e0920a979173af97e358 919 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 592 7.7E-154 T 23-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 RD1_RS10465 625de1959fc9e0920a979173af97e358 919 Pfam PF00575 S1 RNA binding domain 39 81 1.9E-4 T 23-04-2016 IPR003029 S1 domain GO:0003676 RD1_RS05580 d4487833c2c98873ec1f7804fc061ee1 278 SMART SM00062 31 261 4.3E-37 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD1_RS05580 d4487833c2c98873ec1f7804fc061ee1 278 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 32 254 6.5E-42 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD1_RS05580 d4487833c2c98873ec1f7804fc061ee1 278 PANTHER PTHR30085 4 256 5.5E-45 T 23-04-2016 RD1_RS05580 d4487833c2c98873ec1f7804fc061ee1 278 Gene3D G3DSA:3.40.190.10 219 253 1.3E-20 T 23-04-2016 RD1_RS05580 d4487833c2c98873ec1f7804fc061ee1 278 Gene3D G3DSA:3.40.190.10 26 112 1.3E-20 T 23-04-2016 RD1_RS05580 d4487833c2c98873ec1f7804fc061ee1 278 SUPERFAMILY SSF53850 2 254 7.83E-49 T 23-04-2016 RD1_RS05580 d4487833c2c98873ec1f7804fc061ee1 278 PANTHER PTHR30085:SF2 4 256 5.5E-45 T 23-04-2016 RD1_RS05580 d4487833c2c98873ec1f7804fc061ee1 278 Gene3D G3DSA:3.40.190.10 113 218 2.0E-16 T 23-04-2016 RD1_RS14595 8225beda094eac12a243e22eac04fb58 107 Gene3D G3DSA:3.10.180.10 3 105 1.1E-14 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS14595 8225beda094eac12a243e22eac04fb58 107 PANTHER PTHR33993:SF1 2 106 2.2E-33 T 23-04-2016 RD1_RS14595 8225beda094eac12a243e22eac04fb58 107 PANTHER PTHR33993 2 106 2.2E-33 T 23-04-2016 RD1_RS14595 8225beda094eac12a243e22eac04fb58 107 SUPERFAMILY SSF54593 3 105 7.98E-15 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS00170 3f2dfe8f62ba4ac1bfdbb7e8daf64e8a 61 Pfam PF03966 Trm112p-like protein 9 48 3.8E-6 T 23-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 RD1_RS00170 3f2dfe8f62ba4ac1bfdbb7e8daf64e8a 61 SUPERFAMILY SSF158997 7 60 4.58E-19 T 23-04-2016 RD1_RS00170 3f2dfe8f62ba4ac1bfdbb7e8daf64e8a 61 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 8 61 25.409 T 23-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 RD1_RS00170 3f2dfe8f62ba4ac1bfdbb7e8daf64e8a 61 PANTHER PTHR33505 1 61 6.6E-22 T 23-04-2016 RD1_RS00170 3f2dfe8f62ba4ac1bfdbb7e8daf64e8a 61 Gene3D G3DSA:2.20.25.10 16 60 8.2E-22 T 23-04-2016 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 Gene3D G3DSA:3.50.50.60 2 103 2.7E-23 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 278 5.9E-49 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 SUPERFAMILY SSF56014 630 792 7.2E-48 T 23-04-2016 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 PANTHER PTHR22912 1 410 1.6E-128 T 23-04-2016 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 629 764 5.6E-28 T 23-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 PANTHER PTHR22912:SF1 1 410 1.6E-128 T 23-04-2016 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 1.5E-15 T 23-04-2016 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 1.5E-15 T 23-04-2016 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.5E-15 T 23-04-2016 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 255 277 1.5E-15 T 23-04-2016 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 230 246 1.5E-15 T 23-04-2016 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 SUPERFAMILY SSF51905 2 189 4.42E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 SUPERFAMILY SSF55124 516 637 1.96E-25 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 675 691 - T 23-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 5 775 1.1E-251 T 23-04-2016 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 UniPathway: UPA00653 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 SUPERFAMILY SSF51905 134 305 5.87E-28 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 555 619 8.5E-14 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 Gene3D G3DSA:3.30.413.10 638 763 1.1E-33 T 23-04-2016 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 PIRSF PIRSF037149 1 806 3.5E-292 T 23-04-2016 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 Pfam PF04324 BFD-like [2Fe-2S] binding domain 480 529 6.3E-9 T 23-04-2016 IPR007419 BFD-like [2Fe-2S]-binding domain RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 Pfam PF04324 BFD-like [2Fe-2S] binding domain 418 465 2.6E-10 T 23-04-2016 IPR007419 BFD-like [2Fe-2S]-binding domain RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 103 112 7.8E-12 T 23-04-2016 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 231 245 7.8E-12 T 23-04-2016 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 270 277 7.8E-12 T 23-04-2016 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 144 169 7.8E-12 T 23-04-2016 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 Gene3D G3DSA:3.90.480.10 556 637 1.1E-10 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 Gene3D G3DSA:3.50.50.60 104 303 3.7E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 PRINTS PR00397 Sirohaem Fe-binding site signature 675 693 1.3E-5 T 23-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS19070 bdb70089991680e0c4635be1ea6fc4f7 808 PRINTS PR00397 Sirohaem Fe-binding site signature 632 650 1.3E-5 T 23-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS05880 ad46f448f63bcd59ac3968145fad5af7 478 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 261 272 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS05880 ad46f448f63bcd59ac3968145fad5af7 478 PANTHER PTHR24960 10 391 2.1E-96 T 23-04-2016 RD1_RS05880 ad46f448f63bcd59ac3968145fad5af7 478 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 26 473 2.5E-165 T 23-04-2016 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021 RD1_RS05880 ad46f448f63bcd59ac3968145fad5af7 478 Pfam PF13746 4Fe-4S dicluster domain 210 311 4.5E-40 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS05880 ad46f448f63bcd59ac3968145fad5af7 478 SUPERFAMILY SSF54862 95 117 4.52E-30 T 23-04-2016 RD1_RS05880 ad46f448f63bcd59ac3968145fad5af7 478 SUPERFAMILY SSF54862 165 359 4.52E-30 T 23-04-2016 RD1_RS05880 ad46f448f63bcd59ac3968145fad5af7 478 Pfam PF12801 4Fe-4S binding domain 87 123 4.7E-9 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS05880 ad46f448f63bcd59ac3968145fad5af7 478 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 352 473 4.3E-25 T 23-04-2016 IPR032879 FixG, C-terminal immunoglobulin-like domain RD1_RS05880 ad46f448f63bcd59ac3968145fad5af7 478 Gene3D G3DSA:2.60.40.10 352 473 2.2E-26 T 23-04-2016 IPR013783 Immunoglobulin-like fold RD1_RS05880 ad46f448f63bcd59ac3968145fad5af7 478 Gene3D G3DSA:3.30.70.20 200 296 4.3E-11 T 23-04-2016 RD1_RS05880 ad46f448f63bcd59ac3968145fad5af7 478 PANTHER PTHR24960:SF45 10 391 2.1E-96 T 23-04-2016 RD1_RS02345 e73d54a3273f843ad3d20e45f55d9796 338 PANTHER PTHR11732:SF241 4 95 2.2E-101 T 23-04-2016 RD1_RS02345 e73d54a3273f843ad3d20e45f55d9796 338 PANTHER PTHR11732:SF241 112 338 2.2E-101 T 23-04-2016 RD1_RS02345 e73d54a3273f843ad3d20e45f55d9796 338 Pfam PF00248 Aldo/keto reductase family 20 325 6.2E-43 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS02345 e73d54a3273f843ad3d20e45f55d9796 338 SUPERFAMILY SSF51430 8 325 1.96E-62 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS02345 e73d54a3273f843ad3d20e45f55d9796 338 PANTHER PTHR11732 4 95 2.2E-101 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RD1_RS02345 e73d54a3273f843ad3d20e45f55d9796 338 PANTHER PTHR11732 112 338 2.2E-101 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RD1_RS02345 e73d54a3273f843ad3d20e45f55d9796 338 Gene3D G3DSA:3.20.20.100 6 325 1.2E-54 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS00610 6cc433149aa570e2448d00ea9418b54b 255 Pfam PF03967 Photosynthetic reaction centre, H-chain N-terminal region 4 135 2.7E-53 T 23-04-2016 IPR015810 Photosynthetic reaction centre, H subunit, N-terminal GO:0019684|GO:0030077|GO:0045156 RD1_RS00610 6cc433149aa570e2448d00ea9418b54b 255 Pfam PF05239 PRC-barrel domain 144 210 2.3E-12 T 23-04-2016 IPR027275 PRC-barrel domain RD1_RS00610 6cc433149aa570e2448d00ea9418b54b 255 TIGRFAM TIGR01150 puhA: photosynthetic reaction center H subunit 3 248 4.1E-100 T 23-04-2016 IPR005652 Photosynthetic reaction centre, H subunit GO:0019684|GO:0030077|GO:0045156 RD1_RS00610 6cc433149aa570e2448d00ea9418b54b 255 Gene3D G3DSA:3.90.50.10 117 255 1.2E-53 T 23-04-2016 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal GO:0019684|GO:0030077|GO:0045156 RD1_RS00610 6cc433149aa570e2448d00ea9418b54b 255 SUPERFAMILY SSF50346 35 251 4.71E-80 T 23-04-2016 IPR011033 PRC-barrel-like RD1_RS00610 6cc433149aa570e2448d00ea9418b54b 255 SUPERFAMILY SSF81490 8 43 4.12E-13 T 23-04-2016 RD1_RS00610 6cc433149aa570e2448d00ea9418b54b 255 Gene3D G3DSA:4.10.540.10 1 115 1.8E-46 T 23-04-2016 IPR015810 Photosynthetic reaction centre, H subunit, N-terminal GO:0019684|GO:0030077|GO:0045156 RD1_RS13205 07c277aeaf8f655fc0cd8df0f11bcbdf 201 PANTHER PTHR30246 1 200 1.8E-56 T 23-04-2016 RD1_RS13205 07c277aeaf8f655fc0cd8df0f11bcbdf 201 Pfam PF01081 KDPG and KHG aldolase 3 178 4.8E-26 T 23-04-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RD1_RS13205 07c277aeaf8f655fc0cd8df0f11bcbdf 201 Gene3D G3DSA:3.20.20.70 3 198 3.1E-61 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS13205 07c277aeaf8f655fc0cd8df0f11bcbdf 201 SUPERFAMILY SSF51569 2 199 1.48E-53 T 23-04-2016 RD1_RS13205 07c277aeaf8f655fc0cd8df0f11bcbdf 201 PANTHER PTHR30246:SF1 1 200 1.8E-56 T 23-04-2016 RD1_RS02765 37322bc2b15685272880577c2fe58340 209 Pfam PF01810 LysE type translocator 17 206 1.3E-37 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS02765 37322bc2b15685272880577c2fe58340 209 PIRSF PIRSF006324 3 209 2.2E-53 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS02765 37322bc2b15685272880577c2fe58340 209 PANTHER PTHR30086:SF3 3 209 4.6E-57 T 23-04-2016 RD1_RS02765 37322bc2b15685272880577c2fe58340 209 PANTHER PTHR30086 3 209 4.6E-57 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS01230 8e90c21c962765a1ddb652ba45a36e0b 166 Pfam PF13683 Integrase core domain 84 149 6.8E-29 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS01230 8e90c21c962765a1ddb652ba45a36e0b 166 Gene3D G3DSA:3.30.420.10 1 149 6.7E-38 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS01230 8e90c21c962765a1ddb652ba45a36e0b 166 PANTHER PTHR24559 1 166 3.2E-66 T 23-04-2016 RD1_RS01230 8e90c21c962765a1ddb652ba45a36e0b 166 SUPERFAMILY SSF53098 1 156 1.52E-35 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS01230 8e90c21c962765a1ddb652ba45a36e0b 166 PANTHER PTHR24559:SF185 1 166 3.2E-66 T 23-04-2016 RD1_RS18010 cfa707710cc589cfec7f65caadaee695 236 SUPERFAMILY SSF53474 4 234 1.49E-35 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS18010 cfa707710cc589cfec7f65caadaee695 236 Gene3D G3DSA:3.40.50.1820 4 234 2.1E-56 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS18010 cfa707710cc589cfec7f65caadaee695 236 PANTHER PTHR10992 4 236 4.4E-34 T 23-04-2016 RD1_RS18010 cfa707710cc589cfec7f65caadaee695 236 Pfam PF12697 Alpha/beta hydrolase family 4 227 1.1E-20 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS12425 ff2cafd468c5b18f598a42d40f5f1c08 195 Pfam PF13023 HD domain 15 178 4.7E-48 T 23-04-2016 IPR006674 HD domain RD1_RS12425 ff2cafd468c5b18f598a42d40f5f1c08 195 PANTHER PTHR11845 2 139 2.3E-22 T 23-04-2016 RD1_RS12425 ff2cafd468c5b18f598a42d40f5f1c08 195 Gene3D G3DSA:1.10.3210.10 3 181 1.0E-38 T 23-04-2016 IPR006674 HD domain RD1_RS12425 ff2cafd468c5b18f598a42d40f5f1c08 195 SUPERFAMILY SSF109604 7 182 2.58E-42 T 23-04-2016 RD1_RS12425 ff2cafd468c5b18f598a42d40f5f1c08 195 SMART SM00471 32 114 0.0032 T 23-04-2016 IPR003607 HD/PDEase domain RD1_RS16205 488fc309baf4221b7d149abb82dcd6e3 290 PANTHER PTHR19288 5 278 5.0E-48 T 23-04-2016 RD1_RS16205 488fc309baf4221b7d149abb82dcd6e3 290 PANTHER PTHR19288:SF3 5 278 5.0E-48 T 23-04-2016 RD1_RS16205 488fc309baf4221b7d149abb82dcd6e3 290 TIGRFAM TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family 9 252 1.9E-40 T 23-04-2016 IPR006356 HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 RD1_RS16205 488fc309baf4221b7d149abb82dcd6e3 290 Gene3D G3DSA:3.40.50.1000 8 83 1.0E-27 T 23-04-2016 IPR023214 HAD-like domain RD1_RS16205 488fc309baf4221b7d149abb82dcd6e3 290 Gene3D G3DSA:3.40.50.1000 199 268 1.0E-27 T 23-04-2016 IPR023214 HAD-like domain RD1_RS16205 488fc309baf4221b7d149abb82dcd6e3 290 Pfam PF13344 Haloacid dehalogenase-like hydrolase 19 112 8.0E-14 T 23-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA RD1_RS16205 488fc309baf4221b7d149abb82dcd6e3 290 Pfam PF13242 HAD-hyrolase-like 200 268 3.5E-10 T 23-04-2016 RD1_RS16205 488fc309baf4221b7d149abb82dcd6e3 290 SUPERFAMILY SSF56784 14 268 5.93E-45 T 23-04-2016 IPR023214 HAD-like domain RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 SUPERFAMILY SSF56014 120 275 2.22E-50 T 23-04-2016 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 Gene3D G3DSA:3.90.480.10 48 117 3.5E-36 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 Gene3D G3DSA:3.90.480.10 318 399 3.5E-36 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 270 1.1E-41 T 23-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 410 545 1.9E-9 T 23-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 SUPERFAMILY SSF55124 251 275 1.96E-25 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 SUPERFAMILY SSF55124 312 418 1.96E-25 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 PANTHER PTHR11493:SF47 1 288 4.8E-138 T 23-04-2016 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 PANTHER PTHR11493:SF47 324 548 4.8E-138 T 23-04-2016 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 PANTHER PTHR11493 1 288 4.8E-138 T 23-04-2016 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 PANTHER PTHR11493 324 548 4.8E-138 T 23-04-2016 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 52 111 6.7E-17 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 328 396 1.0E-16 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 Gene3D G3DSA:3.30.413.10 120 271 8.1E-47 T 23-04-2016 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 SUPERFAMILY SSF56014 406 549 1.07E-36 T 23-04-2016 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 Gene3D G3DSA:3.30.413.10 405 546 2.0E-34 T 23-04-2016 RD1_RS13645 154691765c1e39ea9f586ad355262beb 554 SUPERFAMILY SSF55124 1 126 4.91E-29 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS02365 28a04983bddf0ee2580ef0845e5c5328 527 SMART SM00882 4 249 1.5E-56 T 23-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RD1_RS02365 28a04983bddf0ee2580ef0845e5c5328 527 Gene3D G3DSA:3.40.810.20 284 507 3.1E-47 T 23-04-2016 RD1_RS02365 28a04983bddf0ee2580ef0845e5c5328 527 SUPERFAMILY SSF100950 3 266 2.15E-76 T 23-04-2016 RD1_RS02365 28a04983bddf0ee2580ef0845e5c5328 527 PIRSF PIRSF000858 1 527 5.7E-180 T 23-04-2016 IPR014388 3-oxoacid CoA-transferase GO:0008410|GO:0046952 RD1_RS02365 28a04983bddf0ee2580ef0845e5c5328 527 Gene3D G3DSA:3.40.1080.10 3 249 9.6E-60 T 23-04-2016 RD1_RS02365 28a04983bddf0ee2580ef0845e5c5328 527 Pfam PF01144 Coenzyme A transferase 5 249 2.5E-30 T 23-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RD1_RS02365 28a04983bddf0ee2580ef0845e5c5328 527 PANTHER PTHR13707 1 514 7.4E-158 T 23-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RD1_RS02365 28a04983bddf0ee2580ef0845e5c5328 527 SUPERFAMILY SSF100950 279 521 4.19E-61 T 23-04-2016 RD1_RS02365 28a04983bddf0ee2580ef0845e5c5328 527 PANTHER PTHR13707:SF38 1 514 7.4E-158 T 23-04-2016 RD1_RS14760 64d47fa4b2a00cf5ab765ce6ad60eccb 233 Pfam PF01726 LexA DNA binding domain 2 63 1.7E-15 T 23-04-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 RD1_RS14760 64d47fa4b2a00cf5ab765ce6ad60eccb 233 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 186 198 1.2E-9 T 23-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RD1_RS14760 64d47fa4b2a00cf5ab765ce6ad60eccb 233 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 157 168 1.2E-9 T 23-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RD1_RS14760 64d47fa4b2a00cf5ab765ce6ad60eccb 233 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 146 156 1.2E-9 T 23-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RD1_RS14760 64d47fa4b2a00cf5ab765ce6ad60eccb 233 Gene3D G3DSA:1.10.10.10 2 67 1.3E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS14760 64d47fa4b2a00cf5ab765ce6ad60eccb 233 TIGRFAM TIGR00498 lexA: repressor LexA 2 232 7.9E-56 T 23-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RD1_RS14760 64d47fa4b2a00cf5ab765ce6ad60eccb 233 PANTHER PTHR33516:SF2 1 74 7.7E-74 T 23-04-2016 RD1_RS14760 64d47fa4b2a00cf5ab765ce6ad60eccb 233 PANTHER PTHR33516:SF2 102 233 7.7E-74 T 23-04-2016 RD1_RS14760 64d47fa4b2a00cf5ab765ce6ad60eccb 233 PANTHER PTHR33516 1 74 7.7E-74 T 23-04-2016 RD1_RS14760 64d47fa4b2a00cf5ab765ce6ad60eccb 233 PANTHER PTHR33516 102 233 7.7E-74 T 23-04-2016 RD1_RS14760 64d47fa4b2a00cf5ab765ce6ad60eccb 233 SUPERFAMILY SSF46785 2 68 1.46E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS14760 64d47fa4b2a00cf5ab765ce6ad60eccb 233 Gene3D G3DSA:2.10.109.10 110 233 2.3E-39 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RD1_RS14760 64d47fa4b2a00cf5ab765ce6ad60eccb 233 Pfam PF00717 Peptidase S24-like 149 215 4.0E-14 T 23-04-2016 IPR019759 Peptidase S24/S26A/S26B RD1_RS14760 64d47fa4b2a00cf5ab765ce6ad60eccb 233 SUPERFAMILY SSF51306 108 231 3.66E-31 T 23-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C RD1_RS14760 64d47fa4b2a00cf5ab765ce6ad60eccb 233 Hamap MF_00015 LexA repressor [lexA]. 1 233 34.347 T 23-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RD1_RS10580 38b62ce0cb5c82c28fb4b05129ce03a5 402 PANTHER PTHR10108:SF795 57 315 7.7E-102 T 23-04-2016 RD1_RS10580 38b62ce0cb5c82c28fb4b05129ce03a5 402 PANTHER PTHR10108:SF795 332 401 7.7E-102 T 23-04-2016 RD1_RS10580 38b62ce0cb5c82c28fb4b05129ce03a5 402 SUPERFAMILY SSF53335 135 401 9.71E-78 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS10580 38b62ce0cb5c82c28fb4b05129ce03a5 402 Pfam PF02353 Mycolic acid cyclopropane synthetase 126 396 1.5E-86 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS10580 38b62ce0cb5c82c28fb4b05129ce03a5 402 PIRSF PIRSF003085 10 402 2.4E-136 T 23-04-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 RD1_RS10580 38b62ce0cb5c82c28fb4b05129ce03a5 402 Gene3D G3DSA:3.40.50.150 123 399 1.1E-96 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS10580 38b62ce0cb5c82c28fb4b05129ce03a5 402 PANTHER PTHR10108 57 315 7.7E-102 T 23-04-2016 RD1_RS10580 38b62ce0cb5c82c28fb4b05129ce03a5 402 PANTHER PTHR10108 332 401 7.7E-102 T 23-04-2016 RD1_RS18260 a16dff42539bcc3aec61f5f6fd9db1d5 431 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 14 429 51.619 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RD1_RS18260 a16dff42539bcc3aec61f5f6fd9db1d5 431 Gene3D G3DSA:3.40.640.10 44 291 1.6E-105 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS18260 a16dff42539bcc3aec61f5f6fd9db1d5 431 Pfam PF00464 Serine hydroxymethyltransferase 15 392 1.4E-174 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RD1_RS18260 a16dff42539bcc3aec61f5f6fd9db1d5 431 PANTHER PTHR11680 10 428 6.3E-246 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RD1_RS18260 a16dff42539bcc3aec61f5f6fd9db1d5 431 Gene3D G3DSA:3.90.1150.10 292 429 5.1E-54 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS18260 a16dff42539bcc3aec61f5f6fd9db1d5 431 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 229 245 - T 23-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RD1_RS18260 a16dff42539bcc3aec61f5f6fd9db1d5 431 SUPERFAMILY SSF53383 8 429 8.11E-180 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS18260 a16dff42539bcc3aec61f5f6fd9db1d5 431 PIRSF PIRSF000412 3 431 1.6E-168 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RD1_RS19445 a16dff42539bcc3aec61f5f6fd9db1d5 431 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 14 429 51.619 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RD1_RS19445 a16dff42539bcc3aec61f5f6fd9db1d5 431 Gene3D G3DSA:3.40.640.10 44 291 1.6E-105 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS19445 a16dff42539bcc3aec61f5f6fd9db1d5 431 Pfam PF00464 Serine hydroxymethyltransferase 15 392 1.4E-174 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RD1_RS19445 a16dff42539bcc3aec61f5f6fd9db1d5 431 PANTHER PTHR11680 10 428 6.3E-246 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RD1_RS19445 a16dff42539bcc3aec61f5f6fd9db1d5 431 Gene3D G3DSA:3.90.1150.10 292 429 5.1E-54 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS19445 a16dff42539bcc3aec61f5f6fd9db1d5 431 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 229 245 - T 23-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RD1_RS19445 a16dff42539bcc3aec61f5f6fd9db1d5 431 SUPERFAMILY SSF53383 8 429 8.11E-180 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS19445 a16dff42539bcc3aec61f5f6fd9db1d5 431 PIRSF PIRSF000412 3 431 1.6E-168 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RD1_RS17990 2c1da08cb376d730b0ef5c768776968c 228 Gene3D G3DSA:3.40.50.1000 91 225 9.0E-35 T 23-04-2016 IPR023214 HAD-like domain RD1_RS17990 2c1da08cb376d730b0ef5c768776968c 228 PANTHER PTHR12725 1 225 2.0E-23 T 23-04-2016 RD1_RS17990 2c1da08cb376d730b0ef5c768776968c 228 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 3 203 2.3E-56 T 23-04-2016 IPR006328 Haloacid dehalogenase, type II GO:0008152|GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 RD1_RS17990 2c1da08cb376d730b0ef5c768776968c 228 Gene3D G3DSA:1.10.150.240 23 90 3.8E-24 T 23-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RD1_RS17990 2c1da08cb376d730b0ef5c768776968c 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 111 124 1.1E-28 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS17990 2c1da08cb376d730b0ef5c768776968c 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 48 61 1.1E-28 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS17990 2c1da08cb376d730b0ef5c768776968c 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 160 180 1.1E-28 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS17990 2c1da08cb376d730b0ef5c768776968c 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 1.1E-28 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS17990 2c1da08cb376d730b0ef5c768776968c 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 142 158 1.1E-28 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS17990 2c1da08cb376d730b0ef5c768776968c 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 187 200 1.1E-28 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS17990 2c1da08cb376d730b0ef5c768776968c 228 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 6 189 2.8E-29 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS17990 2c1da08cb376d730b0ef5c768776968c 228 SUPERFAMILY SSF56784 1 222 3.61E-54 T 23-04-2016 IPR023214 HAD-like domain RD1_RS17990 2c1da08cb376d730b0ef5c768776968c 228 Pfam PF00702 haloacid dehalogenase-like hydrolase 3 187 5.1E-16 T 23-04-2016 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 Pfam PF00400 WD domain, G-beta repeat 112 146 2.7E-4 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 Pfam PF00400 WD domain, G-beta repeat 157 188 1.9E-8 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 Pfam PF00400 WD domain, G-beta repeat 35 67 0.018 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 Pfam PF00400 WD domain, G-beta repeat 75 106 0.031 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 Gene3D G3DSA:1.10.760.10 339 439 4.0E-27 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 Pfam PF00034 Cytochrome c 341 438 4.3E-6 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 SUPERFAMILY SSF50978 31 314 3.87E-55 T 23-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 PRINTS PR00320 G protein beta WD-40 repeat signature 175 189 7.9E-6 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 PRINTS PR00320 G protein beta WD-40 repeat signature 134 148 7.9E-6 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 PRINTS PR00320 G protein beta WD-40 repeat signature 93 107 7.9E-6 T 23-04-2016 IPR020472 G-protein beta WD-40 repeat RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 SMART SM00320 108 147 1.4E-4 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 SMART SM00320 30 68 0.0022 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 SMART SM00320 149 188 9.8E-10 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 SMART SM00320 191 230 4.7 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 SMART SM00320 233 272 28.0 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 SMART SM00320 69 106 2.3 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 SMART SM00320 279 315 22.0 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 PRINTS PR00604 Class IA and IB cytochrome C signature 412 422 9.6E-10 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 PRINTS PR00604 Class IA and IB cytochrome C signature 349 356 9.6E-10 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 PRINTS PR00604 Class IA and IB cytochrome C signature 429 437 9.6E-10 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 PRINTS PR00604 Class IA and IB cytochrome C signature 362 377 9.6E-10 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 SUPERFAMILY SSF46626 339 439 1.41E-23 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 175 189 - T 23-04-2016 IPR019775 WD40 repeat, conserved site RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 Gene3D G3DSA:2.130.10.10 27 314 2.1E-57 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 PANTHER PTHR22847 253 302 1.7E-41 T 23-04-2016 RD1_RS04560 ff483548e7d85f26089b98d5225b4568 442 PANTHER PTHR22847 18 229 1.7E-41 T 23-04-2016 RD1_RS06690 d169fedbd0f05033136e9ec21ca5735e 338 Gene3D G3DSA:3.40.190.10 123 204 1.5E-10 T 23-04-2016 RD1_RS06690 d169fedbd0f05033136e9ec21ca5735e 338 SMART SM00062 33 262 1.5E-45 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD1_RS06690 d169fedbd0f05033136e9ec21ca5735e 338 PANTHER PTHR30085:SF5 1 307 3.2E-151 T 23-04-2016 RD1_RS06690 d169fedbd0f05033136e9ec21ca5735e 338 Gene3D G3DSA:3.40.190.10 222 251 7.8E-16 T 23-04-2016 RD1_RS06690 d169fedbd0f05033136e9ec21ca5735e 338 Gene3D G3DSA:3.40.190.10 30 122 7.8E-16 T 23-04-2016 RD1_RS06690 d169fedbd0f05033136e9ec21ca5735e 338 PANTHER PTHR30085 1 307 3.2E-151 T 23-04-2016 RD1_RS06690 d169fedbd0f05033136e9ec21ca5735e 338 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 252 4.5E-25 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD1_RS06690 d169fedbd0f05033136e9ec21ca5735e 338 SUPERFAMILY SSF53850 24 253 4.89E-47 T 23-04-2016 RD1_RS03745 208144e7e8bf4392855234a2c3e09c91 82 SMART SM00530 15 70 2.2E-14 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS03745 208144e7e8bf4392855234a2c3e09c91 82 SUPERFAMILY SSF47413 8 77 3.1E-17 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS03745 208144e7e8bf4392855234a2c3e09c91 82 Pfam PF01381 Helix-turn-helix 16 70 1.1E-14 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS03745 208144e7e8bf4392855234a2c3e09c91 82 Gene3D G3DSA:1.10.260.40 4 79 1.0E-18 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS03745 208144e7e8bf4392855234a2c3e09c91 82 PANTHER PTHR10245 2 75 2.7E-13 T 23-04-2016 RD1_RS07250 b3f723f6cfeac5e24ef692bd8a3132ce 334 Gene3D G3DSA:1.10.10.10 1 57 6.6E-7 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07250 b3f723f6cfeac5e24ef692bd8a3132ce 334 PANTHER PTHR30154:SF27 158 323 2.0E-38 T 23-04-2016 RD1_RS07250 b3f723f6cfeac5e24ef692bd8a3132ce 334 Gene3D G3DSA:1.10.10.10 164 217 1.6E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07250 b3f723f6cfeac5e24ef692bd8a3132ce 334 PANTHER PTHR30154 158 323 2.0E-38 T 23-04-2016 RD1_RS07250 b3f723f6cfeac5e24ef692bd8a3132ce 334 SUPERFAMILY SSF46785 166 229 2.27E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS20050 9061b28361a39847fd227242aa353bad 456 SUPERFAMILY SSF51905 137 224 2.72E-14 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS20050 9061b28361a39847fd227242aa353bad 456 SUPERFAMILY SSF51905 5 35 2.72E-14 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS20050 9061b28361a39847fd227242aa353bad 456 Gene3D G3DSA:3.30.9.10 27 136 8.1E-34 T 23-04-2016 RD1_RS20050 9061b28361a39847fd227242aa353bad 456 PANTHER PTHR13847:SF193 4 256 3.0E-83 T 23-04-2016 RD1_RS20050 9061b28361a39847fd227242aa353bad 456 SUPERFAMILY SSF103025 229 455 1.31E-66 T 23-04-2016 RD1_RS20050 9061b28361a39847fd227242aa353bad 456 PANTHER PTHR13847 4 256 3.0E-83 T 23-04-2016 RD1_RS20050 9061b28361a39847fd227242aa353bad 456 Pfam PF01266 FAD dependent oxidoreductase 5 176 2.2E-13 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS20050 9061b28361a39847fd227242aa353bad 456 Gene3D G3DSA:3.30.70.1400 301 384 5.5E-22 T 23-04-2016 RD1_RS20050 9061b28361a39847fd227242aa353bad 456 Gene3D G3DSA:3.30.1360.120 232 300 1.0E-27 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS20050 9061b28361a39847fd227242aa353bad 456 Gene3D G3DSA:3.30.1360.120 388 455 1.0E-27 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS20050 9061b28361a39847fd227242aa353bad 456 Pfam PF16350 FAD dependent oxidoreductase central domain 180 233 1.9E-15 T 23-04-2016 IPR032503 FAD dependent oxidoreductase, central domain RD1_RS20050 9061b28361a39847fd227242aa353bad 456 SUPERFAMILY SSF54373 35 136 3.92E-32 T 23-04-2016 RD1_RS20050 9061b28361a39847fd227242aa353bad 456 Gene3D G3DSA:3.50.50.60 4 26 2.1E-20 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS20050 9061b28361a39847fd227242aa353bad 456 Gene3D G3DSA:3.50.50.60 137 196 2.1E-20 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS20050 9061b28361a39847fd227242aa353bad 456 Pfam PF01571 Aminomethyltransferase folate-binding domain 237 455 5.6E-53 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS19425 4e2092eb6dd86136c857bea3af9ea025 399 PIRSF PIRSF001554 1 388 3.5E-147 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RD1_RS19425 4e2092eb6dd86136c857bea3af9ea025 399 PANTHER PTHR11815 1 382 2.4E-211 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RD1_RS19425 4e2092eb6dd86136c857bea3af9ea025 399 PANTHER PTHR11815:SF1 1 382 2.4E-211 T 23-04-2016 RD1_RS19425 4e2092eb6dd86136c857bea3af9ea025 399 SUPERFAMILY SSF56059 1 238 2.55E-77 T 23-04-2016 RD1_RS19425 4e2092eb6dd86136c857bea3af9ea025 399 Pfam PF00549 CoA-ligase 262 381 6.5E-27 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS19425 4e2092eb6dd86136c857bea3af9ea025 399 Pfam PF08442 ATP-grasp domain 2 203 1.7E-75 T 23-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS19425 4e2092eb6dd86136c857bea3af9ea025 399 Gene3D G3DSA:3.30.470.20 95 239 2.3E-55 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS19425 4e2092eb6dd86136c857bea3af9ea025 399 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 23-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS19425 4e2092eb6dd86136c857bea3af9ea025 399 Gene3D G3DSA:3.40.50.261 240 382 6.3E-64 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS19425 4e2092eb6dd86136c857bea3af9ea025 399 Gene3D G3DSA:3.30.1490.20 22 94 1.1E-29 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS19425 4e2092eb6dd86136c857bea3af9ea025 399 SUPERFAMILY SSF52210 239 385 8.11E-53 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS19425 4e2092eb6dd86136c857bea3af9ea025 399 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 384 2.3E-157 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RD1_RS19425 4e2092eb6dd86136c857bea3af9ea025 399 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 41.016 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 8 469 1.1E-162 T 23-04-2016 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 PRINTS PR00419 Adrenodoxin reductase family signature 327 340 1.8E-34 T 23-04-2016 RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 PRINTS PR00419 Adrenodoxin reductase family signature 215 225 1.8E-34 T 23-04-2016 RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 PRINTS PR00419 Adrenodoxin reductase family signature 293 307 1.8E-34 T 23-04-2016 RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 PRINTS PR00419 Adrenodoxin reductase family signature 150 172 1.8E-34 T 23-04-2016 RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 PRINTS PR00419 Adrenodoxin reductase family signature 173 186 1.8E-34 T 23-04-2016 RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 Gene3D G3DSA:3.50.50.60 239 400 8.0E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 Gene3D G3DSA:3.40.50.720 153 238 7.1E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 Gene3D G3DSA:3.40.50.720 401 473 7.1E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 PANTHER PTHR11938 23 469 1.6E-137 T 23-04-2016 RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 136 1.1E-37 T 23-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 SUPERFAMILY SSF51971 150 401 2.35E-63 T 23-04-2016 RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 SUPERFAMILY SSF46548 6 158 2.35E-35 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 Gene3D G3DSA:1.10.1060.10 8 152 4.1E-42 T 23-04-2016 RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 PANTHER PTHR11938:SF93 23 469 1.6E-137 T 23-04-2016 RD1_RS00285 9de7cde539a57e6ae422b14ed34559e4 477 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 150 457 2.3E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00130 c8a37b91f342f04f067af94b15005402 108 Pfam PF08755 Hemimethylated DNA-binding protein YccV like 6 95 5.5E-26 T 23-04-2016 IPR011722 Hemimethylated DNA-binding domain GO:0003677 RD1_RS00130 c8a37b91f342f04f067af94b15005402 108 PANTHER PTHR31350:SF6 1 93 9.8E-32 T 23-04-2016 RD1_RS00130 c8a37b91f342f04f067af94b15005402 108 SUPERFAMILY SSF141255 6 98 5.49E-35 T 23-04-2016 IPR011722 Hemimethylated DNA-binding domain GO:0003677 RD1_RS00130 c8a37b91f342f04f067af94b15005402 108 SMART SM00992 5 104 5.2E-52 T 23-04-2016 IPR011722 Hemimethylated DNA-binding domain GO:0003677 RD1_RS00130 c8a37b91f342f04f067af94b15005402 108 TIGRFAM TIGR02097 yccV: hemimethylated DNA binding domain 6 101 3.0E-36 T 23-04-2016 IPR011722 Hemimethylated DNA-binding domain GO:0003677 RD1_RS00130 c8a37b91f342f04f067af94b15005402 108 PANTHER PTHR31350 1 93 9.8E-32 T 23-04-2016 RD1_RS06695 3b3270692a79035f353c86b9bd8fd9e7 404 SUPERFAMILY SSF161098 89 156 2.78E-11 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS06695 3b3270692a79035f353c86b9bd8fd9e7 404 PANTHER PTHR30085 1 183 1.6E-103 T 23-04-2016 RD1_RS06695 3b3270692a79035f353c86b9bd8fd9e7 404 PANTHER PTHR30085 262 404 1.6E-103 T 23-04-2016 RD1_RS06695 3b3270692a79035f353c86b9bd8fd9e7 404 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 88 151 7.3E-13 T 23-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RD1_RS06695 3b3270692a79035f353c86b9bd8fd9e7 404 SUPERFAMILY SSF161098 195 386 6.93E-24 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS06695 3b3270692a79035f353c86b9bd8fd9e7 404 Gene3D G3DSA:1.10.3720.10 85 155 3.5E-41 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS06695 3b3270692a79035f353c86b9bd8fd9e7 404 Gene3D G3DSA:1.10.3720.10 267 398 3.5E-41 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS06695 3b3270692a79035f353c86b9bd8fd9e7 404 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 399 8.5E-12 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS06695 3b3270692a79035f353c86b9bd8fd9e7 404 PANTHER PTHR30085:SF1 1 183 1.6E-103 T 23-04-2016 RD1_RS06695 3b3270692a79035f353c86b9bd8fd9e7 404 PANTHER PTHR30085:SF1 262 404 1.6E-103 T 23-04-2016 RD1_RS00400 f44d63de7f482dc12ce9f205a0f49058 419 Gene3D G3DSA:3.90.1150.10 271 414 7.4E-28 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS00400 f44d63de7f482dc12ce9f205a0f49058 419 SUPERFAMILY SSF53383 10 417 1.11E-53 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS00400 f44d63de7f482dc12ce9f205a0f49058 419 Gene3D G3DSA:3.40.640.10 58 270 9.2E-30 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS00400 f44d63de7f482dc12ce9f205a0f49058 419 PANTHER PTHR11601 301 414 4.3E-71 T 23-04-2016 RD1_RS00400 f44d63de7f482dc12ce9f205a0f49058 419 PANTHER PTHR11601 7 284 4.3E-71 T 23-04-2016 RD1_RS00400 f44d63de7f482dc12ce9f205a0f49058 419 Pfam PF00266 Aminotransferase class-V 30 407 4.1E-29 T 23-04-2016 IPR000192 Aminotransferase class V domain RD1_RS00400 f44d63de7f482dc12ce9f205a0f49058 419 PANTHER PTHR11601:SF22 301 414 4.3E-71 T 23-04-2016 RD1_RS00400 f44d63de7f482dc12ce9f205a0f49058 419 PANTHER PTHR11601:SF22 7 284 4.3E-71 T 23-04-2016 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 SUPERFAMILY SSF111369 90 154 3.01E-6 T 23-04-2016 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 PANTHER PTHR30386:SF4 165 453 1.1E-54 T 23-04-2016 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 PANTHER PTHR30386:SF4 43 136 1.1E-54 T 23-04-2016 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 Pfam PF13437 HlyD family secretion protein 302 398 5.4E-14 T 23-04-2016 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 314 335 8.0E-34 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 347 371 8.0E-34 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 417 432 8.0E-34 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 93 113 8.0E-34 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 432 452 8.0E-34 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 371 394 8.0E-34 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 51 74 8.0E-34 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 Gene3D G3DSA:2.40.50.100 299 334 1.1E-13 T 23-04-2016 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 Gene3D G3DSA:2.40.50.100 84 115 1.1E-13 T 23-04-2016 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 Pfam PF13533 Biotin-lipoyl like 91 126 2.7E-6 T 23-04-2016 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 43 452 3.6E-77 T 23-04-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 PANTHER PTHR30386 165 453 1.1E-54 T 23-04-2016 RD1_RS02720 1ba3744995e2c66e5eab9e171b1cf02c 453 PANTHER PTHR30386 43 136 1.1E-54 T 23-04-2016 RD1_RS03420 d846d84d7a3686705919d73ba1e64252 326 SUPERFAMILY SSF51905 7 189 1.42E-24 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03420 d846d84d7a3686705919d73ba1e64252 326 SUPERFAMILY SSF51905 273 316 1.42E-24 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03420 d846d84d7a3686705919d73ba1e64252 326 Gene3D G3DSA:3.30.9.10 172 271 5.4E-20 T 23-04-2016 RD1_RS03420 d846d84d7a3686705919d73ba1e64252 326 Gene3D G3DSA:3.50.50.60 109 171 1.0E-4 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03420 d846d84d7a3686705919d73ba1e64252 326 Pfam PF01266 FAD dependent oxidoreductase 6 309 5.8E-33 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS03420 d846d84d7a3686705919d73ba1e64252 326 PANTHER PTHR13847:SF180 7 318 8.1E-26 T 23-04-2016 RD1_RS03420 d846d84d7a3686705919d73ba1e64252 326 Gene3D G3DSA:3.50.50.60 7 82 5.1E-9 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03420 d846d84d7a3686705919d73ba1e64252 326 PANTHER PTHR13847 7 318 8.1E-26 T 23-04-2016 RD1_RS03420 d846d84d7a3686705919d73ba1e64252 326 SUPERFAMILY SSF54373 182 271 2.49E-18 T 23-04-2016 RD1_RS16630 b59678b276d592873c6d6a4d53c7e93a 443 Pfam PF13685 Iron-containing alcohol dehydrogenase 43 301 4.5E-71 T 23-04-2016 IPR032837 Glycerol-1-phosphate dehydrogenase KEGG: 00564+1.1.1.261|KEGG: 00630+1.1.1.26|MetaCyc: PWY-6349|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00940 RD1_RS16630 b59678b276d592873c6d6a4d53c7e93a 443 Gene3D G3DSA:3.40.50.1970 37 182 4.0E-25 T 23-04-2016 RD1_RS16630 b59678b276d592873c6d6a4d53c7e93a 443 SUPERFAMILY SSF56796 383 425 4.71E-47 T 23-04-2016 RD1_RS16630 b59678b276d592873c6d6a4d53c7e93a 443 SUPERFAMILY SSF56796 38 317 4.71E-47 T 23-04-2016 RD1_RS16630 b59678b276d592873c6d6a4d53c7e93a 443 Gene3D G3DSA:1.20.1090.10 186 314 9.7E-48 T 23-04-2016 RD1_RS16630 b59678b276d592873c6d6a4d53c7e93a 443 Gene3D G3DSA:1.20.1090.10 383 440 9.7E-48 T 23-04-2016 RD1_RS16630 b59678b276d592873c6d6a4d53c7e93a 443 PANTHER PTHR11496 39 423 2.8E-22 T 23-04-2016 RD1_RS16630 b59678b276d592873c6d6a4d53c7e93a 443 PANTHER PTHR11496:SF61 39 423 2.8E-22 T 23-04-2016 RD1_RS15605 8d76ad70ee230dac43fb873ebfdbf4ac 333 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 90 104 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RD1_RS15605 8d76ad70ee230dac43fb873ebfdbf4ac 333 PANTHER PTHR12001 18 333 9.5E-101 T 23-04-2016 IPR017446 Polyprenyl synthetase-related RD1_RS15605 8d76ad70ee230dac43fb873ebfdbf4ac 333 SUPERFAMILY SSF48576 11 332 1.55E-95 T 23-04-2016 IPR008949 Isoprenoid synthase domain RD1_RS15605 8d76ad70ee230dac43fb873ebfdbf4ac 333 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 212 224 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RD1_RS15605 8d76ad70ee230dac43fb873ebfdbf4ac 333 Pfam PF00348 Polyprenyl synthetase 41 284 6.6E-69 T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RD1_RS15605 8d76ad70ee230dac43fb873ebfdbf4ac 333 PANTHER PTHR12001:SF47 18 333 9.5E-101 T 23-04-2016 RD1_RS15605 8d76ad70ee230dac43fb873ebfdbf4ac 333 Gene3D G3DSA:1.10.600.10 12 331 6.9E-101 T 23-04-2016 IPR008949 Isoprenoid synthase domain RD1_RS13500 c9bfb36d029e4f4484f0a3aaa391ea2c 483 PANTHER PTHR30562:SF6 16 466 3.5E-165 T 23-04-2016 RD1_RS13500 c9bfb36d029e4f4484f0a3aaa391ea2c 483 SUPERFAMILY SSF51735 12 271 6.69E-90 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13500 c9bfb36d029e4f4484f0a3aaa391ea2c 483 Gene3D G3DSA:3.40.50.720 13 271 1.8E-101 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13500 c9bfb36d029e4f4484f0a3aaa391ea2c 483 PANTHER PTHR30562 16 466 3.5E-165 T 23-04-2016 RD1_RS13500 c9bfb36d029e4f4484f0a3aaa391ea2c 483 Gene3D G3DSA:1.10.1040.10 274 478 7.1E-70 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS13500 c9bfb36d029e4f4484f0a3aaa391ea2c 483 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 207 454 2.2E-79 T 23-04-2016 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 RD1_RS13500 c9bfb36d029e4f4484f0a3aaa391ea2c 483 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 17 177 1.9E-36 T 23-04-2016 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 RD1_RS13500 c9bfb36d029e4f4484f0a3aaa391ea2c 483 PRINTS PR00084 Mannitol dehydrogenase signature 18 28 1.3E-15 T 23-04-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RD1_RS13500 c9bfb36d029e4f4484f0a3aaa391ea2c 483 PRINTS PR00084 Mannitol dehydrogenase signature 237 252 1.3E-15 T 23-04-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RD1_RS13500 c9bfb36d029e4f4484f0a3aaa391ea2c 483 PRINTS PR00084 Mannitol dehydrogenase signature 207 220 1.3E-15 T 23-04-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RD1_RS13500 c9bfb36d029e4f4484f0a3aaa391ea2c 483 PRINTS PR00084 Mannitol dehydrogenase signature 168 181 1.3E-15 T 23-04-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RD1_RS13500 c9bfb36d029e4f4484f0a3aaa391ea2c 483 SUPERFAMILY SSF48179 274 478 3.74E-60 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS09560 ffe1f4738dc4c2a03cca3051c411525b 339 Pfam PF01636 Phosphotransferase enzyme family 26 252 1.5E-48 T 23-04-2016 IPR002575 Aminoglycoside phosphotransferase RD1_RS09560 ffe1f4738dc4c2a03cca3051c411525b 339 Gene3D G3DSA:3.30.200.20 28 92 3.2E-4 T 23-04-2016 RD1_RS09560 ffe1f4738dc4c2a03cca3051c411525b 339 PANTHER PTHR21310 1 300 5.9E-14 T 23-04-2016 RD1_RS09560 ffe1f4738dc4c2a03cca3051c411525b 339 Gene3D G3DSA:3.90.1200.10 120 321 1.1E-30 T 23-04-2016 RD1_RS09560 ffe1f4738dc4c2a03cca3051c411525b 339 SUPERFAMILY SSF56112 5 329 1.08E-55 T 23-04-2016 IPR011009 Protein kinase-like domain RD1_RS06905 10a8ec35756e00fd2882cc92c4cc972b 442 Gene3D G3DSA:3.40.50.720 17 239 1.9E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS06905 10a8ec35756e00fd2882cc92c4cc972b 442 SUPERFAMILY SSF51735 24 212 8.31E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS06905 10a8ec35756e00fd2882cc92c4cc972b 442 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 337 433 2.3E-18 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RD1_RS06905 10a8ec35756e00fd2882cc92c4cc972b 442 SMART SM00984 336 434 5.6E-27 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RD1_RS06905 10a8ec35756e00fd2882cc92c4cc972b 442 SUPERFAMILY SSF48179 218 310 8.16E-30 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS06905 10a8ec35756e00fd2882cc92c4cc972b 442 SUPERFAMILY SSF52413 324 434 8.37E-25 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RD1_RS06905 10a8ec35756e00fd2882cc92c4cc972b 442 PANTHER PTHR11374 19 435 1.4E-164 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RD1_RS06905 10a8ec35756e00fd2882cc92c4cc972b 442 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 24 429 6.3E-121 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RD1_RS06905 10a8ec35756e00fd2882cc92c4cc972b 442 PIRSF PIRSF500136 13 440 3.0E-136 T 23-04-2016 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 RD1_RS06905 10a8ec35756e00fd2882cc92c4cc972b 442 Gene3D G3DSA:3.40.50.720 250 434 7.7E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS06905 10a8ec35756e00fd2882cc92c4cc972b 442 PIRSF PIRSF000124 22 438 1.8E-53 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RD1_RS06905 10a8ec35756e00fd2882cc92c4cc972b 442 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 219 309 6.1E-28 T 23-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 RD1_RS06905 10a8ec35756e00fd2882cc92c4cc972b 442 PANTHER PTHR11374:SF4 19 435 1.4E-164 T 23-04-2016 RD1_RS06905 10a8ec35756e00fd2882cc92c4cc972b 442 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 24 198 3.6E-36 T 23-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 RD1_RS00060 e9ce4b9cae8d247e8c4a67405ba431b1 315 Gene3D G3DSA:3.40.190.100 117 239 2.9E-21 T 23-04-2016 RD1_RS00060 e9ce4b9cae8d247e8c4a67405ba431b1 315 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 26 302 3.9E-47 T 23-04-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 RD1_RS00060 e9ce4b9cae8d247e8c4a67405ba431b1 315 PANTHER PTHR30177:SF0 234 306 1.2E-18 T 23-04-2016 RD1_RS00060 e9ce4b9cae8d247e8c4a67405ba431b1 315 PANTHER PTHR30177:SF0 20 217 1.2E-18 T 23-04-2016 RD1_RS00060 e9ce4b9cae8d247e8c4a67405ba431b1 315 PANTHER PTHR30177 234 306 1.2E-18 T 23-04-2016 RD1_RS00060 e9ce4b9cae8d247e8c4a67405ba431b1 315 PANTHER PTHR30177 20 217 1.2E-18 T 23-04-2016 RD1_RS00060 e9ce4b9cae8d247e8c4a67405ba431b1 315 Gene3D G3DSA:3.40.190.10 258 304 1.7E-9 T 23-04-2016 RD1_RS00060 e9ce4b9cae8d247e8c4a67405ba431b1 315 Gene3D G3DSA:3.40.190.10 23 116 1.7E-9 T 23-04-2016 RD1_RS00060 e9ce4b9cae8d247e8c4a67405ba431b1 315 SUPERFAMILY SSF53850 20 312 1.93E-56 T 23-04-2016 RD1_RS09455 3b653a8624a01378ec1817f89c5a537e 724 SUPERFAMILY SSF56024 335 512 2.1E-54 T 23-04-2016 RD1_RS09455 3b653a8624a01378ec1817f89c5a537e 724 Gene3D G3DSA:3.30.870.10 517 702 1.0E-66 T 23-04-2016 RD1_RS09455 3b653a8624a01378ec1817f89c5a537e 724 SUPERFAMILY SSF140356 25 129 2.88E-36 T 23-04-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 RD1_RS09455 3b653a8624a01378ec1817f89c5a537e 724 Gene3D G3DSA:3.30.1840.10 129 316 2.6E-57 T 23-04-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 RD1_RS09455 3b653a8624a01378ec1817f89c5a537e 724 Pfam PF02503 Polyphosphate kinase middle domain 142 337 6.6E-56 T 23-04-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 RD1_RS09455 3b653a8624a01378ec1817f89c5a537e 724 PIRSF PIRSF015589 11 715 2.2E-258 T 23-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RD1_RS09455 3b653a8624a01378ec1817f89c5a537e 724 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 27 702 2.0E-279 T 23-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RD1_RS09455 3b653a8624a01378ec1817f89c5a537e 724 Pfam PF13090 Polyphosphate kinase C-terminal domain 347 700 2.1E-147 T 23-04-2016 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 RD1_RS09455 3b653a8624a01378ec1817f89c5a537e 724 SUPERFAMILY SSF56024 517 701 1.35E-63 T 23-04-2016 RD1_RS09455 3b653a8624a01378ec1817f89c5a537e 724 Pfam PF13089 Polyphosphate kinase N-terminal domain 28 132 3.7E-34 T 23-04-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 RD1_RS09455 3b653a8624a01378ec1817f89c5a537e 724 Gene3D G3DSA:3.30.870.10 333 516 2.9E-74 T 23-04-2016 RD1_RS09455 3b653a8624a01378ec1817f89c5a537e 724 Hamap MF_00347 Polyphosphate kinase [ppk]. 25 704 30.982 T 23-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RD1_RS09455 3b653a8624a01378ec1817f89c5a537e 724 PANTHER PTHR30218:SF0 3 701 0.0 T 23-04-2016 RD1_RS09455 3b653a8624a01378ec1817f89c5a537e 724 PANTHER PTHR30218 3 701 0.0 T 23-04-2016 RD1_RS09455 3b653a8624a01378ec1817f89c5a537e 724 SUPERFAMILY SSF143724 130 329 6.87E-57 T 23-04-2016 RD1_RS06525 487a36932f85b9d719f313499104e78d 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 38.681 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RD1_RS06525 487a36932f85b9d719f313499104e78d 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 23-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06525 487a36932f85b9d719f313499104e78d 137 PANTHER PTHR12220 1 137 4.3E-74 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RD1_RS06525 487a36932f85b9d719f313499104e78d 137 SUPERFAMILY SSF54686 1 137 9.42E-59 T 23-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RD1_RS06525 487a36932f85b9d719f313499104e78d 137 Gene3D G3DSA:3.90.1170.10 23 136 3.9E-55 T 23-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RD1_RS06525 487a36932f85b9d719f313499104e78d 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 23-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06525 487a36932f85b9d719f313499104e78d 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 8.4E-50 T 23-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RD1_RS06525 487a36932f85b9d719f313499104e78d 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 2.0E-38 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RD1_RS06525 487a36932f85b9d719f313499104e78d 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 2.0E-38 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RD1_RS06525 487a36932f85b9d719f313499104e78d 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 2.0E-38 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RD1_RS06525 487a36932f85b9d719f313499104e78d 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 2.0E-38 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RD1_RS06525 487a36932f85b9d719f313499104e78d 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 1.3E-59 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RD1_RS11620 d0f41285f44bf65b87fd6f0c23080b20 240 Pfam PF00293 NUDIX domain 22 192 6.5E-9 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RD1_RS11620 d0f41285f44bf65b87fd6f0c23080b20 240 PANTHER PTHR12318 19 186 1.1E-26 T 23-04-2016 RD1_RS11620 d0f41285f44bf65b87fd6f0c23080b20 240 SUPERFAMILY SSF55811 20 65 1.77E-18 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS11620 d0f41285f44bf65b87fd6f0c23080b20 240 SUPERFAMILY SSF55811 93 107 1.77E-18 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS11620 d0f41285f44bf65b87fd6f0c23080b20 240 SUPERFAMILY SSF55811 134 208 1.77E-18 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS11620 d0f41285f44bf65b87fd6f0c23080b20 240 Gene3D G3DSA:3.90.79.10 19 211 1.5E-26 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS11620 d0f41285f44bf65b87fd6f0c23080b20 240 PANTHER PTHR12318:SF0 19 186 1.1E-26 T 23-04-2016 RD1_RS04535 0483f5bb15f8a8dd545aadb269e78011 268 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS04535 0483f5bb15f8a8dd545aadb269e78011 268 SMART SM00382 33 214 1.2E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS04535 0483f5bb15f8a8dd545aadb269e78011 268 PANTHER PTHR24220 5 216 5.6E-88 T 23-04-2016 RD1_RS04535 0483f5bb15f8a8dd545aadb269e78011 268 Gene3D G3DSA:3.40.50.300 4 217 2.0E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04535 0483f5bb15f8a8dd545aadb269e78011 268 SUPERFAMILY SSF52540 5 219 3.19E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04535 0483f5bb15f8a8dd545aadb269e78011 268 Pfam PF00005 ABC transporter 24 163 1.6E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS02915 73ef5ff647e025ee32fe2f2460ede834 217 Pfam PF00578 AhpC/TSA family 5 142 1.8E-27 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 RD1_RS02915 73ef5ff647e025ee32fe2f2460ede834 217 PIRSF PIRSF000239 1 215 2.6E-73 T 23-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 RD1_RS02915 73ef5ff647e025ee32fe2f2460ede834 217 Gene3D G3DSA:3.40.30.10 4 165 1.0E-55 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS02915 73ef5ff647e025ee32fe2f2460ede834 217 Gene3D G3DSA:3.30.1020.10 166 216 3.4E-24 T 23-04-2016 RD1_RS02915 73ef5ff647e025ee32fe2f2460ede834 217 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 165 200 2.9E-14 T 23-04-2016 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RD1_RS02915 73ef5ff647e025ee32fe2f2460ede834 217 SUPERFAMILY SSF52833 3 214 1.94E-66 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS02915 73ef5ff647e025ee32fe2f2460ede834 217 PANTHER PTHR10681 3 216 2.2E-78 T 23-04-2016 RD1_RS02915 73ef5ff647e025ee32fe2f2460ede834 217 PANTHER PTHR10681:SF99 3 216 2.2E-78 T 23-04-2016 RD1_RS02185 e576c8d6c18c96b2771cb9e42e3cd710 234 SUPERFAMILY SSF69618 6 223 5.75E-27 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS02185 e576c8d6c18c96b2771cb9e42e3cd710 234 Pfam PF02602 Uroporphyrinogen-III synthase HemD 32 220 2.8E-17 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS02185 e576c8d6c18c96b2771cb9e42e3cd710 234 Gene3D G3DSA:3.40.50.10090 128 226 6.8E-4 T 23-04-2016 RD1_RS13435 a48d66d642938a302beee3800931bdde 498 ProSitePatterns PS00455 Putative AMP-binding domain signature. 155 166 - T 23-04-2016 IPR020845 AMP-binding, conserved site RD1_RS13435 a48d66d642938a302beee3800931bdde 498 Gene3D G3DSA:3.40.50.980 161 322 1.2E-39 T 23-04-2016 RD1_RS13435 a48d66d642938a302beee3800931bdde 498 Gene3D G3DSA:3.40.50.980 22 160 3.3E-27 T 23-04-2016 RD1_RS13435 a48d66d642938a302beee3800931bdde 498 Pfam PF13193 AMP-binding enzyme C-terminal domain 410 485 9.7E-14 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RD1_RS13435 a48d66d642938a302beee3800931bdde 498 Gene3D G3DSA:3.30.300.30 396 493 3.3E-25 T 23-04-2016 RD1_RS13435 a48d66d642938a302beee3800931bdde 498 Gene3D G3DSA:2.30.38.10 327 394 3.9E-24 T 23-04-2016 RD1_RS13435 a48d66d642938a302beee3800931bdde 498 Pfam PF00501 AMP-binding enzyme 24 400 4.3E-88 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RD1_RS13435 a48d66d642938a302beee3800931bdde 498 PANTHER PTHR24095 12 495 1.3E-137 T 23-04-2016 RD1_RS13435 a48d66d642938a302beee3800931bdde 498 SUPERFAMILY SSF56801 11 494 8.5E-132 T 23-04-2016 RD1_RS02040 625c3c42afe0aae8e9b0e6a66ca30350 277 SUPERFAMILY SSF51735 107 272 2.23E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02040 625c3c42afe0aae8e9b0e6a66ca30350 277 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 129 197 7.3E-9 T 23-04-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RD1_RS02040 625c3c42afe0aae8e9b0e6a66ca30350 277 SUPERFAMILY SSF53223 6 106 3.05E-31 T 23-04-2016 RD1_RS02040 625c3c42afe0aae8e9b0e6a66ca30350 277 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 11 93 3.9E-26 T 23-04-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS02040 625c3c42afe0aae8e9b0e6a66ca30350 277 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 8 272 9.2E-70 T 23-04-2016 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS02040 625c3c42afe0aae8e9b0e6a66ca30350 277 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 6 277 32.323 T 23-04-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS02040 625c3c42afe0aae8e9b0e6a66ca30350 277 Gene3D G3DSA:3.40.192.10 5 111 9.0E-39 T 23-04-2016 RD1_RS02040 625c3c42afe0aae8e9b0e6a66ca30350 277 PANTHER PTHR21089 8 267 2.8E-90 T 23-04-2016 RD1_RS02040 625c3c42afe0aae8e9b0e6a66ca30350 277 Gene3D G3DSA:3.40.50.720 112 273 4.4E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS06625 9eb302ea32916d079b9470cf63085b9b 160 SUPERFAMILY SSF52080 4 148 1.83E-41 T 23-04-2016 IPR021131 Ribosomal protein L18e/L15P RD1_RS06625 9eb302ea32916d079b9470cf63085b9b 160 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 151 19.731 T 23-04-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 RD1_RS06625 9eb302ea32916d079b9470cf63085b9b 160 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 148 9.4E-47 T 23-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 RD1_RS06625 9eb302ea32916d079b9470cf63085b9b 160 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 149 1.5E-33 T 23-04-2016 IPR021131 Ribosomal protein L18e/L15P RD1_RS06625 9eb302ea32916d079b9470cf63085b9b 160 PANTHER PTHR12934 1 150 2.1E-63 T 23-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 RD1_RS06625 9eb302ea32916d079b9470cf63085b9b 160 ProSitePatterns PS00475 Ribosomal protein L15 signature. 115 145 - T 23-04-2016 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06625 9eb302ea32916d079b9470cf63085b9b 160 Gene3D G3DSA:3.100.10.10 32 151 2.7E-25 T 23-04-2016 RD1_RS01535 e0e419e7ce82f264fe31b36cd0685454 314 PANTHER PTHR22855 1 283 9.8E-138 T 23-04-2016 RD1_RS01535 e0e419e7ce82f264fe31b36cd0685454 314 SUPERFAMILY SSF52096 25 282 4.97E-81 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS01535 e0e419e7ce82f264fe31b36cd0685454 314 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 3 279 1.7E-109 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS01535 e0e419e7ce82f264fe31b36cd0685454 314 Pfam PF01039 Carboxyl transferase domain 98 243 3.9E-16 T 23-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS01535 e0e419e7ce82f264fe31b36cd0685454 314 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 281 36.443 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS01535 e0e419e7ce82f264fe31b36cd0685454 314 Gene3D G3DSA:3.90.226.10 19 279 1.9E-65 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS01535 e0e419e7ce82f264fe31b36cd0685454 314 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 5.2E-37 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS01535 e0e419e7ce82f264fe31b36cd0685454 314 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 5.2E-37 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS01535 e0e419e7ce82f264fe31b36cd0685454 314 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 5.2E-37 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS01535 e0e419e7ce82f264fe31b36cd0685454 314 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 5.2E-37 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS01535 e0e419e7ce82f264fe31b36cd0685454 314 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 5.2E-37 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS01535 e0e419e7ce82f264fe31b36cd0685454 314 PANTHER PTHR22855:SF17 1 283 9.8E-138 T 23-04-2016 RD1_RS15225 df117d7eca6d67b7e9d314770f9c7c50 576 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 75 479 2.3E-65 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain RD1_RS15225 df117d7eca6d67b7e9d314770f9c7c50 576 PANTHER PTHR30290 320 574 1.8E-183 T 23-04-2016 RD1_RS15225 df117d7eca6d67b7e9d314770f9c7c50 576 PANTHER PTHR30290 28 299 1.8E-183 T 23-04-2016 RD1_RS15225 df117d7eca6d67b7e9d314770f9c7c50 576 PANTHER PTHR30290:SF6 320 574 1.8E-183 T 23-04-2016 RD1_RS15225 df117d7eca6d67b7e9d314770f9c7c50 576 PANTHER PTHR30290:SF6 28 299 1.8E-183 T 23-04-2016 RD1_RS15225 df117d7eca6d67b7e9d314770f9c7c50 576 PIRSF PIRSF002741 1 575 2.3E-65 T 23-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RD1_RS15225 df117d7eca6d67b7e9d314770f9c7c50 576 Gene3D G3DSA:3.90.76.10 43 201 9.4E-33 T 23-04-2016 RD1_RS15225 df117d7eca6d67b7e9d314770f9c7c50 576 Gene3D G3DSA:3.40.190.10 202 323 3.1E-22 T 23-04-2016 RD1_RS15225 df117d7eca6d67b7e9d314770f9c7c50 576 SUPERFAMILY SSF53850 30 571 2.17E-105 T 23-04-2016 RD1_RS15225 df117d7eca6d67b7e9d314770f9c7c50 576 Gene3D G3DSA:3.10.105.10 324 543 1.0E-41 T 23-04-2016 RD1_RS02870 3b4879ae98dd03167ec0a53f0a8763ee 482 Gene3D G3DSA:3.30.465.10 108 227 3.6E-29 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RD1_RS02870 3b4879ae98dd03167ec0a53f0a8763ee 482 PANTHER PTHR11748 1 478 1.5E-166 T 23-04-2016 RD1_RS02870 3b4879ae98dd03167ec0a53f0a8763ee 482 Pfam PF01565 FAD binding domain 52 191 1.6E-33 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RD1_RS02870 3b4879ae98dd03167ec0a53f0a8763ee 482 SUPERFAMILY SSF56176 16 227 1.68E-67 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RD1_RS02870 3b4879ae98dd03167ec0a53f0a8763ee 482 Gene3D G3DSA:1.10.45.10 426 465 1.8E-5 T 23-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RD1_RS02870 3b4879ae98dd03167ec0a53f0a8763ee 482 Pfam PF02913 FAD linked oxidases, C-terminal domain 227 465 3.1E-54 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RD1_RS02870 3b4879ae98dd03167ec0a53f0a8763ee 482 PANTHER PTHR11748:SF78 1 478 1.5E-166 T 23-04-2016 RD1_RS02870 3b4879ae98dd03167ec0a53f0a8763ee 482 Gene3D G3DSA:3.30.43.10 8 106 1.9E-29 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RD1_RS02870 3b4879ae98dd03167ec0a53f0a8763ee 482 SUPERFAMILY SSF55103 230 468 5.23E-63 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RD1_RS09175 bd726f9bcaab6a3e728bca29aea46965 148 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 2.8E-50 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 RD1_RS09175 bd726f9bcaab6a3e728bca29aea46965 148 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 33.549 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 RD1_RS09175 bd726f9bcaab6a3e728bca29aea46965 148 PANTHER PTHR10472 2 147 7.4E-63 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 RD1_RS09175 bd726f9bcaab6a3e728bca29aea46965 148 SUPERFAMILY SSF69500 1 145 3.92E-53 T 23-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain RD1_RS09175 bd726f9bcaab6a3e728bca29aea46965 148 Gene3D G3DSA:3.50.80.10 1 145 7.7E-55 T 23-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain RD1_RS09175 bd726f9bcaab6a3e728bca29aea46965 148 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 4.7E-55 T 23-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 RD1_RS03030 ee089e3fe590af303ad6a3b165f45f54 444 Pfam PF05193 Peptidase M16 inactive domain 190 372 4.7E-26 T 23-04-2016 IPR007863 Peptidase M16, C-terminal RD1_RS03030 ee089e3fe590af303ad6a3b165f45f54 444 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 56 79 - T 23-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 RD1_RS03030 ee089e3fe590af303ad6a3b165f45f54 444 SUPERFAMILY SSF63411 24 238 8.07E-57 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RD1_RS03030 ee089e3fe590af303ad6a3b165f45f54 444 SUPERFAMILY SSF63411 247 430 1.58E-33 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RD1_RS03030 ee089e3fe590af303ad6a3b165f45f54 444 Gene3D G3DSA:3.30.830.10 258 430 8.6E-25 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RD1_RS03030 ee089e3fe590af303ad6a3b165f45f54 444 PANTHER PTHR11851:SF136 23 441 3.1E-91 T 23-04-2016 RD1_RS03030 ee089e3fe590af303ad6a3b165f45f54 444 Pfam PF00675 Insulinase (Peptidase family M16) 36 179 1.0E-28 T 23-04-2016 IPR011765 Peptidase M16, N-terminal RD1_RS03030 ee089e3fe590af303ad6a3b165f45f54 444 Gene3D G3DSA:3.30.830.10 23 243 2.7E-56 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RD1_RS03030 ee089e3fe590af303ad6a3b165f45f54 444 PANTHER PTHR11851 23 441 3.1E-91 T 23-04-2016 RD1_RS01385 0c203dc47216f67a43a0da85687d3702 355 Pfam PF00633 Helix-hairpin-helix motif 113 141 4.9E-9 T 23-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 RD1_RS01385 0c203dc47216f67a43a0da85687d3702 355 Gene3D G3DSA:1.10.1670.10 136 235 4.6E-38 T 23-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RD1_RS01385 0c203dc47216f67a43a0da85687d3702 355 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 203 219 - T 23-04-2016 IPR004035 Endonuclease III, iron-sulphur binding site RD1_RS01385 0c203dc47216f67a43a0da85687d3702 355 SUPERFAMILY SSF55811 231 354 1.82E-22 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS01385 0c203dc47216f67a43a0da85687d3702 355 SMART SM00478 52 201 1.9E-41 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RD1_RS01385 0c203dc47216f67a43a0da85687d3702 355 Pfam PF14815 NUDIX domain 245 352 1.7E-20 T 23-04-2016 IPR029119 MutY, C-terminal RD1_RS01385 0c203dc47216f67a43a0da85687d3702 355 PANTHER PTHR10359 1 321 7.2E-87 T 23-04-2016 RD1_RS01385 0c203dc47216f67a43a0da85687d3702 355 Gene3D G3DSA:3.90.79.10 242 354 5.5E-14 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS01385 0c203dc47216f67a43a0da85687d3702 355 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 49 165 5.4E-14 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RD1_RS01385 0c203dc47216f67a43a0da85687d3702 355 Gene3D G3DSA:1.10.340.30 39 135 4.0E-42 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RD1_RS01385 0c203dc47216f67a43a0da85687d3702 355 ProSitePatterns PS01155 Endonuclease III family signature. 115 144 - T 23-04-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 RD1_RS01385 0c203dc47216f67a43a0da85687d3702 355 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 11 276 3.6E-89 T 23-04-2016 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 RD1_RS01385 0c203dc47216f67a43a0da85687d3702 355 SUPERFAMILY SSF48150 10 236 2.2E-70 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RD1_RS01385 0c203dc47216f67a43a0da85687d3702 355 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 203 219 2.0E-4 T 23-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 RD1_RS06910 ffb8ee1282ba6e37c894240084d2f262 312 PANTHER PTHR31891:SF6 7 309 2.5E-95 T 23-04-2016 RD1_RS06910 ffb8ee1282ba6e37c894240084d2f262 312 PANTHER PTHR31891 7 309 2.5E-95 T 23-04-2016 RD1_RS06910 ffb8ee1282ba6e37c894240084d2f262 312 Gene3D G3DSA:2.60.120.580 134 220 7.6E-58 T 23-04-2016 RD1_RS06910 ffb8ee1282ba6e37c894240084d2f262 312 Gene3D G3DSA:2.60.120.580 5 86 7.6E-58 T 23-04-2016 RD1_RS06910 ffb8ee1282ba6e37c894240084d2f262 312 Gene3D G3DSA:3.10.28.20 226 311 2.0E-24 T 23-04-2016 RD1_RS06910 ffb8ee1282ba6e37c894240084d2f262 312 SUPERFAMILY SSF141130 6 311 4.71E-90 T 23-04-2016 RD1_RS06910 ffb8ee1282ba6e37c894240084d2f262 312 Pfam PF03069 Acetamidase/Formamidase family 153 308 1.6E-33 T 23-04-2016 IPR004304 Acetamidase/Formamidase GO:0016811 RD1_RS06910 ffb8ee1282ba6e37c894240084d2f262 312 Pfam PF03069 Acetamidase/Formamidase family 9 147 5.9E-24 T 23-04-2016 IPR004304 Acetamidase/Formamidase GO:0016811 RD1_RS00250 5bf2864e3bfa597bd8f2e057afd5acc8 667 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 5 167 1.8E-33 T 23-04-2016 IPR008040 Hydantoinaseoxoprolinase, N-terminal RD1_RS00250 5bf2864e3bfa597bd8f2e057afd5acc8 667 Gene3D G3DSA:3.30.420.190 266 311 1.6E-5 T 23-04-2016 RD1_RS00250 5bf2864e3bfa597bd8f2e057afd5acc8 667 Pfam PF01968 Hydantoinase/oxoprolinase 188 575 2.4E-26 T 23-04-2016 IPR002821 Hydantoinase/oxoprolinase GO:0016787 RD1_RS00250 5bf2864e3bfa597bd8f2e057afd5acc8 667 Gene3D G3DSA:3.30.420.40 222 265 5.1E-4 T 23-04-2016 RD1_RS00250 5bf2864e3bfa597bd8f2e057afd5acc8 667 Gene3D G3DSA:3.30.420.40 2 61 5.1E-4 T 23-04-2016 RD1_RS00250 5bf2864e3bfa597bd8f2e057afd5acc8 667 SUPERFAMILY SSF53067 264 357 3.82E-5 T 23-04-2016 RD1_RS00250 5bf2864e3bfa597bd8f2e057afd5acc8 667 SUPERFAMILY SSF53067 1 115 7.78E-14 T 23-04-2016 RD1_RS00250 5bf2864e3bfa597bd8f2e057afd5acc8 667 PANTHER PTHR11365 1 335 2.4E-60 T 23-04-2016 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 SMART SM01097 9 139 7.8E-76 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 PRINTS PR00097 Anthranilate synthase component II signature 241 250 3.1E-6 T 23-04-2016 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 PRINTS PR00097 Anthranilate synthase component II signature 356 369 3.1E-6 T 23-04-2016 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 PRINTS PR00097 Anthranilate synthase component II signature 271 282 3.1E-6 T 23-04-2016 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 Gene3D G3DSA:3.40.50.880 162 383 1.1E-76 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 199 213 5.5E-38 T 23-04-2016 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 313 324 5.5E-38 T 23-04-2016 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 271 287 5.5E-38 T 23-04-2016 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 288 305 5.5E-38 T 23-04-2016 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 238 252 5.5E-38 T 23-04-2016 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 11 382 2.8E-132 T 23-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 9 385 45.126 T 23-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 PANTHER PTHR11405 9 383 6.9E-192 T 23-04-2016 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 SUPERFAMILY SSF52021 10 153 5.1E-53 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 11 135 1.5E-46 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 PRINTS PR00096 Glutamine amidotransferase superfamily signature 241 250 8.9E-12 T 23-04-2016 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 PRINTS PR00096 Glutamine amidotransferase superfamily signature 271 282 8.9E-12 T 23-04-2016 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 PRINTS PR00096 Glutamine amidotransferase superfamily signature 356 369 8.9E-12 T 23-04-2016 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 Pfam PF00117 Glutamine amidotransferase class-I 202 379 2.9E-42 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 Gene3D G3DSA:3.50.30.20 11 151 3.0E-53 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RD1_RS09080 16370e9c70bbc449fbd04a6126ac3b18 386 SUPERFAMILY SSF52317 161 384 1.2E-60 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS17710 92dc2628c00819be63553715854b0ede 345 PANTHER PTHR11019 239 334 2.8E-17 T 23-04-2016 RD1_RS17710 92dc2628c00819be63553715854b0ede 345 Pfam PF12833 Helix-turn-helix domain 250 326 9.0E-19 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS17710 92dc2628c00819be63553715854b0ede 345 SMART SM00342 244 326 1.0E-14 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS17710 92dc2628c00819be63553715854b0ede 345 SUPERFAMILY SSF46689 280 328 4.93E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS17710 92dc2628c00819be63553715854b0ede 345 PANTHER PTHR11019:SF65 239 334 2.8E-17 T 23-04-2016 RD1_RS17710 92dc2628c00819be63553715854b0ede 345 Gene3D G3DSA:1.10.10.60 280 328 1.9E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS06225 40e1c23d2bebbcb90a328dfa792135ca 227 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 27 226 4.6E-51 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RD1_RS06225 40e1c23d2bebbcb90a328dfa792135ca 227 Gene3D G3DSA:3.90.850.10 22 226 3.8E-77 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RD1_RS06225 40e1c23d2bebbcb90a328dfa792135ca 227 PANTHER PTHR11820 24 226 5.9E-80 T 23-04-2016 RD1_RS06225 40e1c23d2bebbcb90a328dfa792135ca 227 SUPERFAMILY SSF56529 22 226 3.27E-70 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RD1_RS05345 d8155af65e4dc683cd06d23dcd5e15ac 399 Gene3D G3DSA:3.30.1490.20 22 94 3.7E-31 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS05345 d8155af65e4dc683cd06d23dcd5e15ac 399 Pfam PF00549 CoA-ligase 262 381 6.5E-27 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS05345 d8155af65e4dc683cd06d23dcd5e15ac 399 PIRSF PIRSF001554 1 388 1.8E-149 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RD1_RS05345 d8155af65e4dc683cd06d23dcd5e15ac 399 Gene3D G3DSA:3.30.470.20 95 239 2.2E-56 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS05345 d8155af65e4dc683cd06d23dcd5e15ac 399 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 41.469 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RD1_RS05345 d8155af65e4dc683cd06d23dcd5e15ac 399 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 23-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS05345 d8155af65e4dc683cd06d23dcd5e15ac 399 PANTHER PTHR11815 1 382 5.8E-211 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RD1_RS05345 d8155af65e4dc683cd06d23dcd5e15ac 399 PANTHER PTHR11815:SF1 1 382 5.8E-211 T 23-04-2016 RD1_RS05345 d8155af65e4dc683cd06d23dcd5e15ac 399 SUPERFAMILY SSF56059 1 238 1.06E-78 T 23-04-2016 RD1_RS05345 d8155af65e4dc683cd06d23dcd5e15ac 399 Gene3D G3DSA:3.40.50.261 240 382 6.3E-64 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS05345 d8155af65e4dc683cd06d23dcd5e15ac 399 SUPERFAMILY SSF52210 239 385 8.11E-53 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS05345 d8155af65e4dc683cd06d23dcd5e15ac 399 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 384 1.0E-159 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RD1_RS05345 d8155af65e4dc683cd06d23dcd5e15ac 399 Pfam PF08442 ATP-grasp domain 2 203 8.7E-78 T 23-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS18620 e63f10485b4eaafdb1b4702432fc1688 310 TIGRFAM TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC 20 297 8.5E-78 T 23-04-2016 IPR014308 Xanthine dehydrogenase accessory protein XdhC RD1_RS18620 e63f10485b4eaafdb1b4702432fc1688 310 PANTHER PTHR30388:SF5 21 307 1.1E-50 T 23-04-2016 RD1_RS18620 e63f10485b4eaafdb1b4702432fc1688 310 Pfam PF13478 XdhC Rossmann domain 156 296 9.5E-27 T 23-04-2016 IPR027051 XdhC Rossmann domain RD1_RS18620 e63f10485b4eaafdb1b4702432fc1688 310 SUPERFAMILY SSF51735 153 242 4.76E-6 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS18620 e63f10485b4eaafdb1b4702432fc1688 310 Gene3D G3DSA:3.40.50.720 155 242 1.1E-4 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS18620 e63f10485b4eaafdb1b4702432fc1688 310 PANTHER PTHR30388 21 307 1.1E-50 T 23-04-2016 RD1_RS18620 e63f10485b4eaafdb1b4702432fc1688 310 Pfam PF02625 XdhC and CoxI family 18 66 1.8E-12 T 23-04-2016 IPR003777 XdhC- CoxI RD1_RS06515 2666104a2c8d3bf146866ade6a47c2f5 126 Pfam PF00237 Ribosomal protein L22p/L17e 20 119 2.7E-28 T 23-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RD1_RS06515 2666104a2c8d3bf146866ade6a47c2f5 126 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 17 119 5.7E-32 T 23-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RD1_RS06515 2666104a2c8d3bf146866ade6a47c2f5 126 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 13 122 24.329 T 23-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RD1_RS06515 2666104a2c8d3bf146866ade6a47c2f5 126 SUPERFAMILY SSF54843 11 124 4.84E-40 T 23-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RD1_RS06515 2666104a2c8d3bf146866ade6a47c2f5 126 Gene3D G3DSA:3.90.470.10 14 124 6.2E-40 T 23-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RD1_RS06515 2666104a2c8d3bf146866ade6a47c2f5 126 PANTHER PTHR13501 8 122 8.1E-43 T 23-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RD1_RS01425 5ac2bcad353b77bb5794c876ff482702 340 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 5 332 1.4E-140 T 23-04-2016 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RD1_RS01425 5ac2bcad353b77bb5794c876ff482702 340 PANTHER PTHR10174 66 332 6.1E-73 T 23-04-2016 RD1_RS01425 5ac2bcad353b77bb5794c876ff482702 340 Gene3D G3DSA:3.30.360.10 143 316 3.0E-79 T 23-04-2016 RD1_RS01425 5ac2bcad353b77bb5794c876ff482702 340 SUPERFAMILY SSF51735 3 157 1.08E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS01425 5ac2bcad353b77bb5794c876ff482702 340 SMART SM00859 4 119 9.5E-37 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RD1_RS01425 5ac2bcad353b77bb5794c876ff482702 340 Gene3D G3DSA:3.40.50.720 2 142 1.1E-61 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS01425 5ac2bcad353b77bb5794c876ff482702 340 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 2 333 35.409 T 23-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RD1_RS01425 5ac2bcad353b77bb5794c876ff482702 340 PANTHER PTHR10174:SF2 66 332 6.1E-73 T 23-04-2016 RD1_RS01425 5ac2bcad353b77bb5794c876ff482702 340 PIRSF PIRSF000148 2 337 3.3E-125 T 23-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RD1_RS01425 5ac2bcad353b77bb5794c876ff482702 340 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 117 1.1E-30 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RD1_RS01425 5ac2bcad353b77bb5794c876ff482702 340 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 139 319 2.9E-52 T 23-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS01425 5ac2bcad353b77bb5794c876ff482702 340 SUPERFAMILY SSF55347 129 320 4.46E-76 T 23-04-2016 RD1_RS18925 8ae305300c8cb605dd227552b8b7ccdf 224 Pfam PF06267 Family of unknown function (DUF1028) 2 189 3.8E-60 T 23-04-2016 IPR010430 Protein of unknown function DUF1028 RD1_RS18925 8ae305300c8cb605dd227552b8b7ccdf 224 SUPERFAMILY SSF56235 1 223 1.62E-73 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS18925 8ae305300c8cb605dd227552b8b7ccdf 224 PANTHER PTHR39328 2 224 1.7E-45 T 23-04-2016 RD1_RS18925 8ae305300c8cb605dd227552b8b7ccdf 224 PANTHER PTHR39328:SF1 2 224 1.7E-45 T 23-04-2016 RD1_RS18925 8ae305300c8cb605dd227552b8b7ccdf 224 Gene3D G3DSA:3.60.20.10 1 215 2.2E-68 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS10405 842ff24b9b07ba903f4ac6a4733afc39 387 SUPERFAMILY SSF47819 199 297 1.16E-23 T 23-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 RD1_RS10405 842ff24b9b07ba903f4ac6a4733afc39 387 SUPERFAMILY SSF53098 2 208 4.99E-61 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS10405 842ff24b9b07ba903f4ac6a4733afc39 387 PANTHER PTHR12124:SF42 4 305 2.9E-55 T 23-04-2016 RD1_RS10405 842ff24b9b07ba903f4ac6a4733afc39 387 TIGRFAM TIGR01388 rnd: ribonuclease D 4 368 1.7E-115 T 23-04-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 RD1_RS10405 842ff24b9b07ba903f4ac6a4733afc39 387 PANTHER PTHR12124 4 305 2.9E-55 T 23-04-2016 RD1_RS10405 842ff24b9b07ba903f4ac6a4733afc39 387 SMART SM00341 212 293 0.0056 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RD1_RS10405 842ff24b9b07ba903f4ac6a4733afc39 387 Hamap MF_01899 Ribonuclease D [rnd]. 1 368 43.389 T 23-04-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 RD1_RS10405 842ff24b9b07ba903f4ac6a4733afc39 387 SMART SM00474 1 174 1.0E-29 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RD1_RS10405 842ff24b9b07ba903f4ac6a4733afc39 387 SUPERFAMILY SSF47819 309 371 1.86E-9 T 23-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 RD1_RS10405 842ff24b9b07ba903f4ac6a4733afc39 387 Gene3D G3DSA:3.30.420.10 2 182 1.7E-15 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS10405 842ff24b9b07ba903f4ac6a4733afc39 387 Gene3D G3DSA:1.10.150.80 221 260 1.3E-4 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RD1_RS10405 842ff24b9b07ba903f4ac6a4733afc39 387 Pfam PF00570 HRDC domain 216 263 1.4E-11 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RD1_RS10405 842ff24b9b07ba903f4ac6a4733afc39 387 Pfam PF01612 3'-5' exonuclease 2 174 7.0E-37 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RD1_RS02730 fe6b4c718f5ada06615058d6addffb15 552 PANTHER PTHR24221 5 539 3.0E-48 T 23-04-2016 RD1_RS02730 fe6b4c718f5ada06615058d6addffb15 552 SMART SM00382 350 537 3.0E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS02730 fe6b4c718f5ada06615058d6addffb15 552 Pfam PF00664 ABC transporter transmembrane region 17 280 3.7E-19 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS02730 fe6b4c718f5ada06615058d6addffb15 552 Pfam PF00005 ABC transporter 342 489 4.0E-15 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS02730 fe6b4c718f5ada06615058d6addffb15 552 Gene3D G3DSA:1.20.1560.10 16 285 1.6E-40 T 23-04-2016 RD1_RS02730 fe6b4c718f5ada06615058d6addffb15 552 SUPERFAMILY SSF90123 16 287 9.29E-40 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS02730 fe6b4c718f5ada06615058d6addffb15 552 SUPERFAMILY SSF52540 322 540 2.8E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02730 fe6b4c718f5ada06615058d6addffb15 552 PANTHER PTHR24221:SF260 5 539 3.0E-48 T 23-04-2016 RD1_RS02730 fe6b4c718f5ada06615058d6addffb15 552 Gene3D G3DSA:3.40.50.300 324 540 1.1E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06430 eefa0684afaa58c7bc9f7a4f5e5dab48 275 PANTHER PTHR24322:SF463 146 178 6.6E-44 T 23-04-2016 RD1_RS06430 eefa0684afaa58c7bc9f7a4f5e5dab48 275 PANTHER PTHR24322:SF463 7 130 6.6E-44 T 23-04-2016 RD1_RS06430 eefa0684afaa58c7bc9f7a4f5e5dab48 275 SUPERFAMILY SSF51735 3 240 2.3E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS06430 eefa0684afaa58c7bc9f7a4f5e5dab48 275 Pfam PF00106 short chain dehydrogenase 3 187 4.7E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS06430 eefa0684afaa58c7bc9f7a4f5e5dab48 275 PANTHER PTHR24322 146 178 6.6E-44 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS06430 eefa0684afaa58c7bc9f7a4f5e5dab48 275 PANTHER PTHR24322 7 130 6.6E-44 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS06430 eefa0684afaa58c7bc9f7a4f5e5dab48 275 Gene3D G3DSA:3.40.50.720 3 272 3.9E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS06430 eefa0684afaa58c7bc9f7a4f5e5dab48 275 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS06430 eefa0684afaa58c7bc9f7a4f5e5dab48 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 6.3E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS06430 eefa0684afaa58c7bc9f7a4f5e5dab48 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 6.3E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS06430 eefa0684afaa58c7bc9f7a4f5e5dab48 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 6.3E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS06430 eefa0684afaa58c7bc9f7a4f5e5dab48 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 6.3E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS06430 eefa0684afaa58c7bc9f7a4f5e5dab48 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 6.3E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15660 1dd458bb80975c3ebaf2bb453bb13d7d 243 PANTHER PTHR34979 14 243 6.0E-28 T 23-04-2016 RD1_RS15660 1dd458bb80975c3ebaf2bb453bb13d7d 243 Pfam PF03591 AzlC protein 24 167 2.0E-33 T 23-04-2016 IPR011606 Branched-chain amino acid transport, permease RD1_RS01925 a160abf02cbce0e35ef8d36ffb64c0ee 427 SMART SM00448 21 134 9.9E-38 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS01925 a160abf02cbce0e35ef8d36ffb64c0ee 427 SUPERFAMILY SSF52172 20 172 5.69E-37 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS01925 a160abf02cbce0e35ef8d36ffb64c0ee 427 PANTHER PTHR26402:SF50 21 136 2.1E-36 T 23-04-2016 RD1_RS01925 a160abf02cbce0e35ef8d36ffb64c0ee 427 Pfam PF00072 Response regulator receiver domain 23 134 1.4E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS01925 a160abf02cbce0e35ef8d36ffb64c0ee 427 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 217 420 3.2E-35 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RD1_RS01925 a160abf02cbce0e35ef8d36ffb64c0ee 427 SMART SM00331 187 420 6.2E-25 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RD1_RS01925 a160abf02cbce0e35ef8d36ffb64c0ee 427 SUPERFAMILY SSF81606 245 383 5.49E-6 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RD1_RS01925 a160abf02cbce0e35ef8d36ffb64c0ee 427 Gene3D G3DSA:3.40.50.2300 19 137 3.0E-35 T 23-04-2016 RD1_RS01925 a160abf02cbce0e35ef8d36ffb64c0ee 427 PANTHER PTHR26402 21 136 2.1E-36 T 23-04-2016 RD1_RS19130 ef8ff7f10f8f9ec3018158956c678d02 304 Pfam PF03466 LysR substrate binding domain 94 292 7.9E-29 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS19130 ef8ff7f10f8f9ec3018158956c678d02 304 SUPERFAMILY SSF53850 94 296 5.07E-35 T 23-04-2016 RD1_RS19130 ef8ff7f10f8f9ec3018158956c678d02 304 Gene3D G3DSA:3.40.190.10 98 196 1.9E-16 T 23-04-2016 RD1_RS19130 ef8ff7f10f8f9ec3018158956c678d02 304 PANTHER PTHR30537:SF3 2 295 1.3E-59 T 23-04-2016 RD1_RS19130 ef8ff7f10f8f9ec3018158956c678d02 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 1.5E-5 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS19130 ef8ff7f10f8f9ec3018158956c678d02 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 1.5E-5 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS19130 ef8ff7f10f8f9ec3018158956c678d02 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 1.5E-5 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS19130 ef8ff7f10f8f9ec3018158956c678d02 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 2.7E-20 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS19130 ef8ff7f10f8f9ec3018158956c678d02 304 SUPERFAMILY SSF46785 6 117 1.77E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS19130 ef8ff7f10f8f9ec3018158956c678d02 304 Gene3D G3DSA:1.10.10.10 8 81 4.0E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS19130 ef8ff7f10f8f9ec3018158956c678d02 304 PANTHER PTHR30537 2 295 1.3E-59 T 23-04-2016 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 Gene3D G3DSA:3.30.160.110 113 148 9.0E-17 T 23-04-2016 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 PANTHER PTHR21091:SF16 59 77 5.3E-55 T 23-04-2016 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 PANTHER PTHR21091:SF16 184 441 5.3E-55 T 23-04-2016 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 Pfam PF13241 Putative NAD(P)-binding 6 115 1.4E-14 T 23-04-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 Gene3D G3DSA:3.40.1010.10 215 331 3.1E-41 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 PIRSF PIRSF036426 1 461 1.5E-134 T 23-04-2016 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 221 235 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 SUPERFAMILY SSF53790 212 443 1.83E-64 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 Gene3D G3DSA:3.40.50.720 1 112 3.3E-25 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 194 1.8E-48 T 23-04-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 443 1.4E-75 T 23-04-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 Pfam PF10414 Sirohaem synthase dimerisation region 150 195 2.4E-6 T 23-04-2016 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 296 329 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 SUPERFAMILY SSF75615 114 191 3.92E-16 T 23-04-2016 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 SUPERFAMILY SSF51735 1 112 9.05E-13 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 427 4.2E-46 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 PANTHER PTHR21091 59 77 5.3E-55 T 23-04-2016 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 PANTHER PTHR21091 184 441 5.3E-55 T 23-04-2016 RD1_RS13635 bca8a24835005f316ee84ef3d237ec28 475 Gene3D G3DSA:3.30.950.10 332 445 2.9E-30 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RD1_RS07930 4bda857e2af3df2e6f6ff0a58b1340c2 576 SUPERFAMILY SSF90123 19 321 2.22E-48 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS07930 4bda857e2af3df2e6f6ff0a58b1340c2 576 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 22 558 1.1E-190 T 23-04-2016 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 RD1_RS07930 4bda857e2af3df2e6f6ff0a58b1340c2 576 Pfam PF00664 ABC transporter transmembrane region 23 278 7.9E-23 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS07930 4bda857e2af3df2e6f6ff0a58b1340c2 576 PANTHER PTHR24222 8 559 4.4E-192 T 23-04-2016 RD1_RS07930 4bda857e2af3df2e6f6ff0a58b1340c2 576 Gene3D G3DSA:1.20.1560.10 19 320 2.0E-43 T 23-04-2016 RD1_RS07930 4bda857e2af3df2e6f6ff0a58b1340c2 576 PANTHER PTHR24222:SF0 8 559 4.4E-192 T 23-04-2016 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 RD1_RS07930 4bda857e2af3df2e6f6ff0a58b1340c2 576 ProSitePatterns PS00211 ABC transporters family signature. 470 484 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS07930 4bda857e2af3df2e6f6ff0a58b1340c2 576 Pfam PF00005 ABC transporter 349 497 8.2E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS07930 4bda857e2af3df2e6f6ff0a58b1340c2 576 SMART SM00382 358 570 2.8E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS07930 4bda857e2af3df2e6f6ff0a58b1340c2 576 SUPERFAMILY SSF52540 323 557 7.17E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07930 4bda857e2af3df2e6f6ff0a58b1340c2 576 Gene3D G3DSA:3.40.50.300 332 558 2.4E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18615 2ae347950f279ce4c6cd3bd7a5008aef 765 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 17 123 7.1E-26 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS18615 2ae347950f279ce4c6cd3bd7a5008aef 765 SUPERFAMILY SSF56003 124 759 4.58E-206 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS18615 2ae347950f279ce4c6cd3bd7a5008aef 765 Gene3D G3DSA:3.90.1170.50 3 124 8.3E-39 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS18615 2ae347950f279ce4c6cd3bd7a5008aef 765 Gene3D G3DSA:3.30.365.10 345 439 6.7E-84 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS18615 2ae347950f279ce4c6cd3bd7a5008aef 765 Gene3D G3DSA:3.30.365.10 606 760 6.7E-84 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS18615 2ae347950f279ce4c6cd3bd7a5008aef 765 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 143 691 5.8E-206 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS18615 2ae347950f279ce4c6cd3bd7a5008aef 765 Gene3D G3DSA:3.30.365.10 440 596 3.3E-54 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS18615 2ae347950f279ce4c6cd3bd7a5008aef 765 Gene3D G3DSA:3.30.365.10 145 159 4.5E-24 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS18615 2ae347950f279ce4c6cd3bd7a5008aef 765 Gene3D G3DSA:3.30.365.10 269 344 4.5E-24 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS18615 2ae347950f279ce4c6cd3bd7a5008aef 765 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 3 759 0.0 T 23-04-2016 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 RD1_RS18615 2ae347950f279ce4c6cd3bd7a5008aef 765 Gene3D G3DSA:3.30.365.10 160 267 6.8E-35 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RD1_RS18615 2ae347950f279ce4c6cd3bd7a5008aef 765 PANTHER PTHR11908:SF66 1 763 0.0 T 23-04-2016 RD1_RS18615 2ae347950f279ce4c6cd3bd7a5008aef 765 SMART SM01008 17 124 1.3E-43 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS18615 2ae347950f279ce4c6cd3bd7a5008aef 765 SUPERFAMILY SSF54665 3 125 4.19E-37 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RD1_RS18615 2ae347950f279ce4c6cd3bd7a5008aef 765 PANTHER PTHR11908 1 763 0.0 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 PANTHER PTHR24093:SF50 30 726 3.8E-145 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 Gene3D G3DSA:2.70.150.10 203 342 1.1E-22 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 SUPERFAMILY SSF81665 186 246 1.23E-13 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 SUPERFAMILY SSF81665 672 703 1.23E-13 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 SUPERFAMILY SSF81665 343 436 1.23E-13 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 215 706 2.1E-67 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 ProSitePatterns PS01229 Hypothetical cof family signature 2. 623 645 - T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 Pfam PF00403 Heavy-metal-associated domain 35 76 3.1E-6 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 Pfam PF00702 haloacid dehalogenase-like hydrolase 438 636 3.6E-35 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 PANTHER PTHR24093 30 726 3.8E-145 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 206 725 9.8E-104 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 ProSitePatterns PS01047 Heavy-metal-associated domain. 36 65 - T 23-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 Gene3D G3DSA:3.40.1110.10 468 538 3.5E-6 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 Gene3D G3DSA:3.40.50.1000 416 458 9.9E-40 T 23-04-2016 IPR023214 HAD-like domain RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 Gene3D G3DSA:3.40.50.1000 543 691 9.9E-40 T 23-04-2016 IPR023214 HAD-like domain RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 163 726 1.5E-147 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 SUPERFAMILY SSF81653 247 342 8.24E-23 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 570 580 2.3E-18 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 292 306 2.3E-18 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 646 658 2.3E-18 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 442 456 2.3E-18 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 623 642 2.3E-18 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 SUPERFAMILY SSF55008 29 96 2.62E-12 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 444 450 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 Pfam PF00122 E1-E2 ATPase 214 433 2.2E-54 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 Gene3D G3DSA:3.30.70.100 31 95 6.7E-14 T 23-04-2016 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 181 724 3.5E-149 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 SUPERFAMILY SSF56784 495 723 7.88E-40 T 23-04-2016 IPR023214 HAD-like domain RD1_RS05890 51ff8f1c220bbd83e00d00e6daaed5b1 729 SUPERFAMILY SSF56784 440 460 7.88E-40 T 23-04-2016 IPR023214 HAD-like domain RD1_RS16340 bfac0945cc05d758c8479e57e91a4a20 957 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 794 916 3.7E-33 T 23-04-2016 IPR007182 Na+/H+ antiporter MnhB subunit-related protein RD1_RS16340 bfac0945cc05d758c8479e57e91a4a20 957 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 216 237 2.2E-36 T 23-04-2016 RD1_RS16340 bfac0945cc05d758c8479e57e91a4a20 957 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 306 318 2.2E-36 T 23-04-2016 RD1_RS16340 bfac0945cc05d758c8479e57e91a4a20 957 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 414 433 2.2E-36 T 23-04-2016 RD1_RS16340 bfac0945cc05d758c8479e57e91a4a20 957 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 238 264 2.2E-36 T 23-04-2016 RD1_RS16340 bfac0945cc05d758c8479e57e91a4a20 957 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 103 123 2.2E-36 T 23-04-2016 RD1_RS16340 bfac0945cc05d758c8479e57e91a4a20 957 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 75 100 2.2E-36 T 23-04-2016 RD1_RS16340 bfac0945cc05d758c8479e57e91a4a20 957 Pfam PF00361 Proton-conducting membrane transporter 126 404 2.1E-68 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RD1_RS16340 bfac0945cc05d758c8479e57e91a4a20 957 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 61 113 2.1E-9 T 23-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RD1_RS16340 bfac0945cc05d758c8479e57e91a4a20 957 PANTHER PTHR22773 1 524 1.2E-202 T 23-04-2016 RD1_RS16340 bfac0945cc05d758c8479e57e91a4a20 957 Pfam PF13244 Domain of unknown function (DUF4040) 610 673 1.2E-19 T 23-04-2016 IPR025383 Domain of unknown function DUF4040 RD1_RS16340 bfac0945cc05d758c8479e57e91a4a20 957 PANTHER PTHR22773:SF46 1 524 1.2E-202 T 23-04-2016 RD1_RS18975 6af73bd1d9fd5dd48c207427a94e5166 117 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 4 117 3.9E-38 T 23-04-2016 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394 RD1_RS18975 6af73bd1d9fd5dd48c207427a94e5166 117 Gene3D G3DSA:2.60.40.180 5 117 6.2E-37 T 23-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily RD1_RS18975 6af73bd1d9fd5dd48c207427a94e5166 117 PANTHER PTHR10395 5 117 5.4E-44 T 23-04-2016 RD1_RS18975 6af73bd1d9fd5dd48c207427a94e5166 117 PANTHER PTHR10395:SF7 5 117 5.4E-44 T 23-04-2016 RD1_RS18975 6af73bd1d9fd5dd48c207427a94e5166 117 ProSitePatterns PS00768 Transthyretin signature 1. 8 23 - T 23-04-2016 IPR023418 Transthyretin, thyroxine binding site RD1_RS18975 6af73bd1d9fd5dd48c207427a94e5166 117 SUPERFAMILY SSF49472 2 117 5.62E-41 T 23-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily RD1_RS18975 6af73bd1d9fd5dd48c207427a94e5166 117 ProSitePatterns PS00769 Transthyretin signature 2. 100 112 - T 23-04-2016 IPR023419 Transthyretin, conserved site RD1_RS18975 6af73bd1d9fd5dd48c207427a94e5166 117 PRINTS PR00189 Transthyretin signature 95 117 6.1E-8 T 23-04-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase RD1_RS18975 6af73bd1d9fd5dd48c207427a94e5166 117 PRINTS PR00189 Transthyretin signature 4 24 6.1E-8 T 23-04-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase RD1_RS18975 6af73bd1d9fd5dd48c207427a94e5166 117 Pfam PF00576 HIUase/Transthyretin family 5 116 2.9E-35 T 23-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily RD1_RS06925 54170e73891cf9d885c6b3ff9235c2f3 435 SUPERFAMILY SSF55931 98 432 7.19E-75 T 23-04-2016 RD1_RS06925 54170e73891cf9d885c6b3ff9235c2f3 435 SMART SM01230 98 345 3.0E-62 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS06925 54170e73891cf9d885c6b3ff9235c2f3 435 PANTHER PTHR20852:SF16 13 435 2.1E-81 T 23-04-2016 RD1_RS06925 54170e73891cf9d885c6b3ff9235c2f3 435 Pfam PF16952 Glutamine synthetase N-terminal domain 6 97 3.8E-18 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS06925 54170e73891cf9d885c6b3ff9235c2f3 435 Pfam PF00120 Glutamine synthetase, catalytic domain 100 427 1.3E-67 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS06925 54170e73891cf9d885c6b3ff9235c2f3 435 Gene3D G3DSA:3.10.20.70 11 100 5.9E-5 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS06925 54170e73891cf9d885c6b3ff9235c2f3 435 Gene3D G3DSA:3.30.590.10 101 420 1.9E-71 T 23-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 RD1_RS06925 54170e73891cf9d885c6b3ff9235c2f3 435 PANTHER PTHR20852 13 435 2.1E-81 T 23-04-2016 RD1_RS10510 3a7c540f7ca44875937f3a6aebeabc81 415 PANTHER PTHR33567 6 357 1.2E-91 T 23-04-2016 RD1_RS10510 3a7c540f7ca44875937f3a6aebeabc81 415 PANTHER PTHR33567 373 415 1.2E-91 T 23-04-2016 RD1_RS10510 3a7c540f7ca44875937f3a6aebeabc81 415 PIRSF PIRSF004810 1 415 5.4E-117 T 23-04-2016 IPR014047 Chromate transporter, long chain RD1_RS10510 3a7c540f7ca44875937f3a6aebeabc81 415 TIGRFAM TIGR00937 2A51: chromate efflux transporter 13 363 1.5E-66 T 23-04-2016 IPR014047 Chromate transporter, long chain RD1_RS10510 3a7c540f7ca44875937f3a6aebeabc81 415 PANTHER PTHR33567:SF1 6 357 1.2E-91 T 23-04-2016 RD1_RS10510 3a7c540f7ca44875937f3a6aebeabc81 415 PANTHER PTHR33567:SF1 373 415 1.2E-91 T 23-04-2016 RD1_RS10510 3a7c540f7ca44875937f3a6aebeabc81 415 Pfam PF02417 Chromate transporter 220 409 3.8E-28 T 23-04-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 RD1_RS10510 3a7c540f7ca44875937f3a6aebeabc81 415 Pfam PF02417 Chromate transporter 8 171 4.5E-38 T 23-04-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 PANTHER PTHR12428 352 487 3.3E-70 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 PANTHER PTHR12428 513 581 3.3E-70 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 PANTHER PTHR12428:SF14 352 487 3.3E-70 T 23-04-2016 RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 PANTHER PTHR12428:SF14 513 581 3.3E-70 T 23-04-2016 RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 377 581 5.0E-69 T 23-04-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 PRINTS PR00701 60kDa inner membrane protein signature 348 368 2.7E-21 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 PRINTS PR00701 60kDa inner membrane protein signature 85 106 2.7E-21 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 PRINTS PR00701 60kDa inner membrane protein signature 439 462 2.7E-21 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 PRINTS PR00701 60kDa inner membrane protein signature 270 285 2.7E-21 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 PRINTS PR00701 60kDa inner membrane protein signature 4 25 2.7E-21 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 6 583 20.778 T 23-04-2016 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 Pfam PF02096 60Kd inner membrane protein 378 581 4.3E-58 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 PRINTS PR01900 YidC translocation/secretion protein signature 363 379 8.4E-18 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 PRINTS PR01900 YidC translocation/secretion protein signature 536 560 8.4E-18 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 PRINTS PR01900 YidC translocation/secretion protein signature 517 532 8.4E-18 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 Pfam PF14849 YidC periplasmic domain 79 367 1.4E-77 T 23-04-2016 IPR028053 Membrane insertase YidC, N-terminal RD1_RS06740 a4d77b503a3460e72eea826a638ec56a 606 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 5 376 1.1E-76 T 23-04-2016 IPR028053 Membrane insertase YidC, N-terminal RD1_RS03630 1e0a88a150bc28f70553eeea0a09138c 143 SUPERFAMILY SSF75169 25 143 2.24E-15 T 23-04-2016 IPR027396 DsrEFH-like RD1_RS03630 1e0a88a150bc28f70553eeea0a09138c 143 Gene3D G3DSA:3.40.1260.10 27 137 2.3E-9 T 23-04-2016 IPR027396 DsrEFH-like RD1_RS18035 a838fc729fa520784ad3b45015352810 231 Gene3D G3DSA:3.50.30.40 11 188 6.6E-24 T 23-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RD1_RS18035 a838fc729fa520784ad3b45015352810 231 Pfam PF03737 Demethylmenaquinone methyltransferase 14 182 1.1E-14 T 23-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RD1_RS18035 a838fc729fa520784ad3b45015352810 231 SUPERFAMILY SSF89562 11 190 2.88E-19 T 23-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RD1_RS16740 038cd0a98ac215e327c38b81abdbfa3c 307 Gene3D G3DSA:1.10.3720.10 70 294 3.6E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS16740 038cd0a98ac215e327c38b81abdbfa3c 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 293 4.3E-17 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS16740 038cd0a98ac215e327c38b81abdbfa3c 307 PANTHER PTHR30406:SF2 3 306 1.2E-72 T 23-04-2016 RD1_RS16740 038cd0a98ac215e327c38b81abdbfa3c 307 PANTHER PTHR30406 3 306 1.2E-72 T 23-04-2016 RD1_RS16740 038cd0a98ac215e327c38b81abdbfa3c 307 SUPERFAMILY SSF161098 65 288 2.88E-53 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 477 2.4E-6 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 PRINTS PR00344 Bacterial sensor protein C-terminal signature 482 500 2.4E-6 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 463 2.4E-6 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 SMART SM00387 412 530 7.6E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 PANTHER PTHR24423 299 506 6.2E-60 T 23-04-2016 RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 PANTHER PTHR24423 213 266 6.2E-60 T 23-04-2016 RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 PANTHER PTHR24423 1 8 6.2E-60 T 23-04-2016 RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 Gene3D G3DSA:1.10.287.130 297 363 6.4E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 SMART SM00388 304 367 6.8E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 Pfam PF00672 HAMP domain 200 266 3.7E-12 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 Gene3D G3DSA:3.30.565.10 368 529 3.5E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 SUPERFAMILY SSF47384 289 368 4.32E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 SUPERFAMILY SSF55874 356 528 7.2E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 413 528 2.3E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 SUPERFAMILY SSF158472 223 266 2.22E-7 T 23-04-2016 RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 SMART SM00304 219 271 2.4E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS05315 bd25e245599f88ef9be14cb16b8f6c15 531 Pfam PF00512 His Kinase A (phospho-acceptor) domain 305 367 7.8E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 PANTHER PTHR11575 17 515 1.1E-185 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 Pfam PF00149 Calcineurin-like phosphoesterase 24 240 1.7E-12 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 ProSitePatterns PS00785 5'-nucleotidase signature 1. 24 36 - T 23-04-2016 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 ProSitePatterns PS00786 5'-nucleotidase signature 2. 109 120 - T 23-04-2016 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 Gene3D G3DSA:3.90.780.10 325 516 2.1E-60 T 23-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 SUPERFAMILY SSF56300 22 311 1.29E-88 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 PANTHER PTHR11575:SF25 17 515 1.1E-185 T 23-04-2016 RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 Gene3D G3DSA:3.60.21.10 18 314 5.7E-92 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 SUPERFAMILY SSF55816 323 516 2.35E-64 T 23-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 Pfam PF02872 5'-nucleotidase, C-terminal domain 326 481 1.0E-47 T 23-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 PRINTS PR01607 Apyrase family signature 22 40 5.8E-39 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 PRINTS PR01607 Apyrase family signature 382 405 5.8E-39 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 PRINTS PR01607 Apyrase family signature 206 223 5.8E-39 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 PRINTS PR01607 Apyrase family signature 262 282 5.8E-39 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 PRINTS PR01607 Apyrase family signature 455 474 5.8E-39 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS18115 eb893cd8cea82da8257e7475daa9bb9b 518 PRINTS PR01607 Apyrase family signature 225 248 5.8E-39 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS02745 31d26346b8faf3de004e2bd1246a1ab2 149 Gene3D G3DSA:2.170.150.20 7 145 8.4E-58 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 RD1_RS02745 31d26346b8faf3de004e2bd1246a1ab2 149 SUPERFAMILY SSF51316 7 143 2.35E-57 T 23-04-2016 IPR011057 Mss4-like RD1_RS02745 31d26346b8faf3de004e2bd1246a1ab2 149 Pfam PF01641 SelR domain 12 128 8.0E-47 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 RD1_RS02745 31d26346b8faf3de004e2bd1246a1ab2 149 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 5 130 35.982 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 RD1_RS02745 31d26346b8faf3de004e2bd1246a1ab2 149 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 8 138 2.8E-57 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 RD1_RS02745 31d26346b8faf3de004e2bd1246a1ab2 149 PANTHER PTHR10173 10 147 1.0E-50 T 23-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 RD1_RS12060 56f311f554e9f92e3118bbb9f4c2f4ed 537 SUPERFAMILY SSF141523 295 352 7.19E-16 T 23-04-2016 RD1_RS12060 56f311f554e9f92e3118bbb9f4c2f4ed 537 SUPERFAMILY SSF141523 404 454 7.19E-16 T 23-04-2016 RD1_RS12060 56f311f554e9f92e3118bbb9f4c2f4ed 537 PANTHER PTHR41533:SF1 51 525 3.4E-87 T 23-04-2016 RD1_RS12060 56f311f554e9f92e3118bbb9f4c2f4ed 537 Gene3D G3DSA:2.40.440.10 293 341 3.5E-8 T 23-04-2016 RD1_RS12060 56f311f554e9f92e3118bbb9f4c2f4ed 537 Gene3D G3DSA:2.40.440.10 406 453 3.5E-8 T 23-04-2016 RD1_RS12060 56f311f554e9f92e3118bbb9f4c2f4ed 537 Pfam PF01471 Putative peptidoglycan binding domain 213 267 1.6E-12 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS12060 56f311f554e9f92e3118bbb9f4c2f4ed 537 SUPERFAMILY SSF47090 199 276 6.98E-16 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS12060 56f311f554e9f92e3118bbb9f4c2f4ed 537 Pfam PF03734 L,D-transpeptidase catalytic domain 297 463 4.0E-27 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RD1_RS12060 56f311f554e9f92e3118bbb9f4c2f4ed 537 PANTHER PTHR41533 51 525 3.4E-87 T 23-04-2016 RD1_RS12060 56f311f554e9f92e3118bbb9f4c2f4ed 537 Gene3D G3DSA:1.10.101.10 202 277 5.3E-19 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS06675 bedc88940819496bc4500e4c2fc371ba 346 PANTHER PTHR11079:SF74 93 342 3.5E-71 T 23-04-2016 RD1_RS06675 bedc88940819496bc4500e4c2fc371ba 346 SMART SM00363 16 73 0.0027 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RD1_RS06675 bedc88940819496bc4500e4c2fc371ba 346 SUPERFAMILY SSF55120 87 336 1.92E-62 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS06675 bedc88940819496bc4500e4c2fc371ba 346 Gene3D G3DSA:3.10.290.10 16 65 3.3E-6 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RD1_RS06675 bedc88940819496bc4500e4c2fc371ba 346 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 139 153 - T 23-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS06675 bedc88940819496bc4500e4c2fc371ba 346 PANTHER PTHR11079 93 342 3.5E-71 T 23-04-2016 RD1_RS06675 bedc88940819496bc4500e4c2fc371ba 346 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 12 329 1.2E-64 T 23-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS06675 bedc88940819496bc4500e4c2fc371ba 346 Pfam PF01479 S4 domain 16 62 7.7E-6 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RD1_RS06675 bedc88940819496bc4500e4c2fc371ba 346 SUPERFAMILY SSF55174 16 66 7.8E-8 T 23-04-2016 RD1_RS06675 bedc88940819496bc4500e4c2fc371ba 346 Pfam PF00849 RNA pseudouridylate synthase 99 260 8.9E-32 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS08070 e4b271e84a9abf150bfb103e755b7f68 410 Gene3D G3DSA:3.90.1150.10 267 385 2.5E-17 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS08070 e4b271e84a9abf150bfb103e755b7f68 410 PANTHER PTHR21152 10 399 3.4E-88 T 23-04-2016 RD1_RS08070 e4b271e84a9abf150bfb103e755b7f68 410 SUPERFAMILY SSF53383 10 384 1.33E-89 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS08070 e4b271e84a9abf150bfb103e755b7f68 410 Gene3D G3DSA:3.40.640.10 24 266 6.5E-45 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS08070 e4b271e84a9abf150bfb103e755b7f68 410 Pfam PF00266 Aminotransferase class-V 13 328 2.6E-23 T 23-04-2016 IPR000192 Aminotransferase class V domain RD1_RS08070 e4b271e84a9abf150bfb103e755b7f68 410 PANTHER PTHR21152:SF21 10 399 3.4E-88 T 23-04-2016 RD1_RS08070 e4b271e84a9abf150bfb103e755b7f68 410 PIRSF PIRSF000524 5 403 5.5E-119 T 23-04-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RD1_RS15275 f2f44eedadc78aa2ecc74b6dae6e5d72 849 Pfam PF01433 Peptidase family M1 113 376 3.3E-58 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RD1_RS15275 f2f44eedadc78aa2ecc74b6dae6e5d72 849 Gene3D G3DSA:1.25.50.10 532 846 8.0E-100 T 23-04-2016 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal RD1_RS15275 f2f44eedadc78aa2ecc74b6dae6e5d72 849 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 13 845 0.0 T 23-04-2016 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 RD1_RS15275 f2f44eedadc78aa2ecc74b6dae6e5d72 849 Pfam PF11940 Domain of unknown function (DUF3458) 449 805 4.6E-114 T 23-04-2016 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal RD1_RS15275 f2f44eedadc78aa2ecc74b6dae6e5d72 849 Gene3D G3DSA:1.10.390.10 300 443 6.9E-30 T 23-04-2016 RD1_RS15275 f2f44eedadc78aa2ecc74b6dae6e5d72 849 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 305 317 7.9E-8 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RD1_RS15275 f2f44eedadc78aa2ecc74b6dae6e5d72 849 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 168 183 7.9E-8 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RD1_RS15275 f2f44eedadc78aa2ecc74b6dae6e5d72 849 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 250 260 7.9E-8 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RD1_RS15275 f2f44eedadc78aa2ecc74b6dae6e5d72 849 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 286 301 7.9E-8 T 23-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RD1_RS15275 f2f44eedadc78aa2ecc74b6dae6e5d72 849 PANTHER PTHR11533:SF152 587 845 4.8E-303 T 23-04-2016 RD1_RS15275 f2f44eedadc78aa2ecc74b6dae6e5d72 849 PANTHER PTHR11533:SF152 5 568 4.8E-303 T 23-04-2016 RD1_RS15275 f2f44eedadc78aa2ecc74b6dae6e5d72 849 SUPERFAMILY SSF55486 196 442 4.88E-73 T 23-04-2016 RD1_RS15275 f2f44eedadc78aa2ecc74b6dae6e5d72 849 SUPERFAMILY SSF63737 7 185 2.88E-39 T 23-04-2016 RD1_RS15275 f2f44eedadc78aa2ecc74b6dae6e5d72 849 PANTHER PTHR11533 587 845 4.8E-303 T 23-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 RD1_RS15275 f2f44eedadc78aa2ecc74b6dae6e5d72 849 PANTHER PTHR11533 5 568 4.8E-303 T 23-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 RD1_RS13810 3b0970a24482714c1cba2b863edcf54e 444 Pfam PF01551 Peptidase family M23 338 433 4.9E-33 T 23-04-2016 IPR016047 Peptidase M23 RD1_RS13810 3b0970a24482714c1cba2b863edcf54e 444 PANTHER PTHR21666 72 437 5.5E-46 T 23-04-2016 RD1_RS13810 3b0970a24482714c1cba2b863edcf54e 444 Gene3D G3DSA:2.70.70.10 304 438 2.0E-51 T 23-04-2016 RD1_RS13810 3b0970a24482714c1cba2b863edcf54e 444 SUPERFAMILY SSF51261 299 437 2.72E-56 T 23-04-2016 IPR011055 Duplicated hybrid motif RD1_RS13325 cad47cedcca4fe222b4f1edbd2e78be2 223 SMART SM00345 9 67 2.1E-17 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS13325 cad47cedcca4fe222b4f1edbd2e78be2 223 SUPERFAMILY SSF46785 6 71 2.72E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS13325 cad47cedcca4fe222b4f1edbd2e78be2 223 SMART SM00895 77 201 8.3E-22 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS13325 cad47cedcca4fe222b4f1edbd2e78be2 223 SUPERFAMILY SSF48008 75 206 3.4E-25 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS13325 cad47cedcca4fe222b4f1edbd2e78be2 223 Gene3D G3DSA:1.20.120.530 75 211 8.2E-29 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS13325 cad47cedcca4fe222b4f1edbd2e78be2 223 Pfam PF07729 FCD domain 77 199 2.7E-25 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS13325 cad47cedcca4fe222b4f1edbd2e78be2 223 Gene3D G3DSA:1.10.10.10 6 68 4.0E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS13325 cad47cedcca4fe222b4f1edbd2e78be2 223 PANTHER PTHR11751 8 93 8.5E-21 T 23-04-2016 RD1_RS13325 cad47cedcca4fe222b4f1edbd2e78be2 223 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 67 3.1E-18 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS07645 b64f0e8877dfa1660107b88796ee1293 288 Pfam PF01063 Amino-transferase class IV 36 260 2.4E-42 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS07645 b64f0e8877dfa1660107b88796ee1293 288 PANTHER PTHR11825 5 281 7.6E-40 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS07645 b64f0e8877dfa1660107b88796ee1293 288 ProSitePatterns PS00770 Aminotransferases class-IV signature. 187 216 - T 23-04-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS07645 b64f0e8877dfa1660107b88796ee1293 288 SUPERFAMILY SSF56752 9 284 7.72E-69 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS07645 b64f0e8877dfa1660107b88796ee1293 288 Gene3D G3DSA:3.30.470.10 9 121 2.2E-19 T 23-04-2016 RD1_RS07645 b64f0e8877dfa1660107b88796ee1293 288 Gene3D G3DSA:3.20.10.10 130 284 2.8E-38 T 23-04-2016 RD1_RS06845 dc91bbe50a39f7265325d2b78b1c4cc8 215 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 67 1.3E-17 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS06845 dc91bbe50a39f7265325d2b78b1c4cc8 215 SUPERFAMILY SSF48008 74 204 2.17E-26 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS06845 dc91bbe50a39f7265325d2b78b1c4cc8 215 SMART SM00895 77 201 1.0E-19 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS06845 dc91bbe50a39f7265325d2b78b1c4cc8 215 PANTHER PTHR11751 7 93 8.5E-26 T 23-04-2016 RD1_RS06845 dc91bbe50a39f7265325d2b78b1c4cc8 215 SMART SM00345 9 67 9.7E-17 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS06845 dc91bbe50a39f7265325d2b78b1c4cc8 215 SUPERFAMILY SSF46785 4 71 3.63E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS06845 dc91bbe50a39f7265325d2b78b1c4cc8 215 Gene3D G3DSA:1.20.120.530 74 211 7.1E-31 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS06845 dc91bbe50a39f7265325d2b78b1c4cc8 215 Gene3D G3DSA:1.10.10.10 5 68 6.1E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS06845 dc91bbe50a39f7265325d2b78b1c4cc8 215 Pfam PF07729 FCD domain 77 199 5.5E-26 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS15375 e7c7e4371d511616e6ac0f34d65a5fbf 307 SUPERFAMILY SSF54211 2 125 1.44E-37 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS15375 e7c7e4371d511616e6ac0f34d65a5fbf 307 PANTHER PTHR33694:SF1 1 294 3.5E-93 T 23-04-2016 RD1_RS15375 e7c7e4371d511616e6ac0f34d65a5fbf 307 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 289 6.6E-78 T 23-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RD1_RS15375 e7c7e4371d511616e6ac0f34d65a5fbf 307 Hamap MF_00388 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [lpxC]. 1 279 35.959 T 23-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RD1_RS15375 e7c7e4371d511616e6ac0f34d65a5fbf 307 Gene3D G3DSA:3.30.230.20 2 124 8.7E-43 T 23-04-2016 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RD1_RS15375 e7c7e4371d511616e6ac0f34d65a5fbf 307 SUPERFAMILY SSF54211 133 276 5.16E-44 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS15375 e7c7e4371d511616e6ac0f34d65a5fbf 307 PANTHER PTHR33694 1 294 3.5E-93 T 23-04-2016 RD1_RS15375 e7c7e4371d511616e6ac0f34d65a5fbf 307 Gene3D G3DSA:3.30.1700.10 129 279 5.8E-50 T 23-04-2016 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RD1_RS15375 e7c7e4371d511616e6ac0f34d65a5fbf 307 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 2 274 6.8E-97 T 23-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 22 252 1.4E-56 T 23-04-2016 RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 1.5E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 1.5E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 1.5E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 205 1.0E-4 T 23-04-2016 RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 PANTHER PTHR24322 17 144 2.5E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 PANTHER PTHR24322 160 192 2.5E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 SUPERFAMILY SSF51735 12 253 1.34E-70 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 Gene3D G3DSA:3.40.50.720 9 253 3.9E-70 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 PANTHER PTHR24322:SF382 17 144 2.5E-45 T 23-04-2016 RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 PANTHER PTHR24322:SF382 160 192 2.5E-45 T 23-04-2016 RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 1.6E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 1.6E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 1.6E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 1.6E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 1.6E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS13195 cde671b7b20956501aa40293d367bc4a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 1.6E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS08140 b233da9997d80e1c655a175bb1dd140c 163 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 20 151 4.2E-34 T 23-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RD1_RS08140 b233da9997d80e1c655a175bb1dd140c 163 PANTHER PTHR33317 19 163 1.6E-39 T 23-04-2016 RD1_RS08140 b233da9997d80e1c655a175bb1dd140c 163 SUPERFAMILY SSF53098 17 153 3.64E-41 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS08140 b233da9997d80e1c655a175bb1dd140c 163 PANTHER PTHR33317:SF1 19 163 1.6E-39 T 23-04-2016 RD1_RS08140 b233da9997d80e1c655a175bb1dd140c 163 SMART SM00732 17 119 4.5E-35 T 23-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RD1_RS08140 b233da9997d80e1c655a175bb1dd140c 163 Gene3D G3DSA:3.30.420.140 16 159 3.3E-50 T 23-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RD1_RS08140 b233da9997d80e1c655a175bb1dd140c 163 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 17 154 25.609 T 23-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RD1_RS08140 b233da9997d80e1c655a175bb1dd140c 163 Pfam PF03652 Holliday junction resolvase 19 151 1.2E-41 T 23-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RD1_RS09540 e41e613766ced108d0b218587c9a6f1d 457 Pfam PF01554 MatE 20 178 2.1E-26 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS09540 e41e613766ced108d0b218587c9a6f1d 457 Pfam PF01554 MatE 244 410 1.6E-26 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS09540 e41e613766ced108d0b218587c9a6f1d 457 PANTHER PTHR11206:SF153 7 441 6.7E-92 T 23-04-2016 RD1_RS09540 e41e613766ced108d0b218587c9a6f1d 457 TIGRFAM TIGR00797 matE: MATE efflux family protein 20 423 1.3E-66 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS09540 e41e613766ced108d0b218587c9a6f1d 457 PANTHER PTHR11206 7 441 6.7E-92 T 23-04-2016 RD1_RS09540 e41e613766ced108d0b218587c9a6f1d 457 PIRSF PIRSF006603 3 453 9.1E-62 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS12325 beb074b9f66b93924737ae1b3bd191f8 345 Gene3D G3DSA:3.40.50.2300 249 306 4.0E-6 T 23-04-2016 RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 Gene3D G3DSA:3.50.7.10 189 366 2.3E-102 T 23-04-2016 IPR027409 GroEL-like apical domain RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 PRINTS PR00298 60kDa chaperonin signature 350 375 1.1E-73 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 PRINTS PR00298 60kDa chaperonin signature 83 110 1.1E-73 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 PRINTS PR00298 60kDa chaperonin signature 27 53 1.1E-73 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 PRINTS PR00298 60kDa chaperonin signature 268 291 1.1E-73 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 PRINTS PR00298 60kDa chaperonin signature 398 419 1.1E-73 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 PANTHER PTHR11353 3 543 4.0E-251 T 23-04-2016 RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 Gene3D G3DSA:1.10.560.10 3 188 3.7E-47 T 23-04-2016 IPR027413 GroEL-like equatorial domain RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 6.4E-258 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 Hamap MF_00600 60 kDa chaperonin [groL]. 2 542 41.912 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 525 7.6E-99 T 23-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 23-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 SUPERFAMILY SSF52029 184 376 1.02E-85 T 23-04-2016 IPR027409 GroEL-like apical domain RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 Gene3D G3DSA:1.10.560.10 367 519 9.1E-42 T 23-04-2016 IPR027413 GroEL-like equatorial domain RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 SUPERFAMILY SSF48592 406 522 1.53E-76 T 23-04-2016 RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 SUPERFAMILY SSF48592 7 134 1.53E-76 T 23-04-2016 RD1_RS03545 8f6530d242f883a26b7bc533334c319e 543 SUPERFAMILY SSF54849 138 204 1.85E-22 T 23-04-2016 RD1_RS07315 f9cfcc896887850631042f1df81fb836 742 PANTHER PTHR33362 188 731 2.6E-169 T 23-04-2016 RD1_RS07315 f9cfcc896887850631042f1df81fb836 742 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 165 729 2.3E-183 T 23-04-2016 IPR011853 TRAP transporter, 4TM/12TM fusion protein RD1_RS07315 f9cfcc896887850631042f1df81fb836 742 PANTHER PTHR33362:SF1 188 731 2.6E-169 T 23-04-2016 RD1_RS07315 f9cfcc896887850631042f1df81fb836 742 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 231 659 1.7E-88 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS00810 860cc7822bff99d161eb50092d22eae7 368 PANTHER PTHR30222:SF2 12 368 4.1E-70 T 23-04-2016 RD1_RS00810 860cc7822bff99d161eb50092d22eae7 368 Pfam PF13416 Bacterial extracellular solute-binding protein 49 316 4.8E-40 T 23-04-2016 RD1_RS00810 860cc7822bff99d161eb50092d22eae7 368 PANTHER PTHR30222 12 368 4.1E-70 T 23-04-2016 RD1_RS00810 860cc7822bff99d161eb50092d22eae7 368 SUPERFAMILY SSF53850 29 366 1.33E-45 T 23-04-2016 RD1_RS00810 860cc7822bff99d161eb50092d22eae7 368 Gene3D G3DSA:3.40.190.10 279 320 1.1E-8 T 23-04-2016 RD1_RS00810 860cc7822bff99d161eb50092d22eae7 368 Gene3D G3DSA:3.40.190.10 28 143 1.1E-8 T 23-04-2016 RD1_RS00810 860cc7822bff99d161eb50092d22eae7 368 Gene3D G3DSA:3.40.190.10 144 278 4.9E-20 T 23-04-2016 RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 390 2.4E-221 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 SUPERFAMILY SSF52540 9 223 6.95E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 SUPERFAMILY SSF50447 202 298 1.26E-29 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 Pfam PF03144 Elongation factor Tu domain 2 222 291 2.2E-17 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 391 59.121 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 PRINTS PR00315 GTP-binding elongation factor signature 53 61 9.2E-25 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 PRINTS PR00315 GTP-binding elongation factor signature 73 83 9.2E-25 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 PRINTS PR00315 GTP-binding elongation factor signature 14 27 9.2E-25 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 PRINTS PR00315 GTP-binding elongation factor signature 126 135 9.2E-25 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 PRINTS PR00315 GTP-binding elongation factor signature 89 100 9.2E-25 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 143 1.4E-15 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 Gene3D G3DSA:2.40.30.10 209 295 3.5E-36 T 23-04-2016 RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 Gene3D G3DSA:2.40.30.10 297 390 3.8E-46 T 23-04-2016 RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 Gene3D G3DSA:3.40.50.300 5 208 3.3E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 PANTHER PTHR23115:SF112 1 389 9.7E-248 T 23-04-2016 RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 PANTHER PTHR23115 1 389 9.7E-248 T 23-04-2016 RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 Pfam PF03143 Elongation factor Tu C-terminal domain 295 389 5.7E-33 T 23-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 SUPERFAMILY SSF50465 295 390 4.03E-35 T 23-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site RD1_RS18355 a5c154cd873849db71783ee9cda02ab2 391 Pfam PF00009 Elongation factor Tu GTP binding domain 10 198 8.0E-58 T 23-04-2016 RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 390 2.4E-221 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 SUPERFAMILY SSF52540 9 223 6.95E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 SUPERFAMILY SSF50447 202 298 1.26E-29 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 Pfam PF03144 Elongation factor Tu domain 2 222 291 2.2E-17 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 391 59.121 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 PRINTS PR00315 GTP-binding elongation factor signature 53 61 9.2E-25 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 PRINTS PR00315 GTP-binding elongation factor signature 73 83 9.2E-25 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 PRINTS PR00315 GTP-binding elongation factor signature 14 27 9.2E-25 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 PRINTS PR00315 GTP-binding elongation factor signature 126 135 9.2E-25 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 PRINTS PR00315 GTP-binding elongation factor signature 89 100 9.2E-25 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 143 1.4E-15 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 Gene3D G3DSA:2.40.30.10 209 295 3.5E-36 T 23-04-2016 RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 Gene3D G3DSA:2.40.30.10 297 390 3.8E-46 T 23-04-2016 RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 Gene3D G3DSA:3.40.50.300 5 208 3.3E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 PANTHER PTHR23115:SF112 1 389 9.7E-248 T 23-04-2016 RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 PANTHER PTHR23115 1 389 9.7E-248 T 23-04-2016 RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 Pfam PF03143 Elongation factor Tu C-terminal domain 295 389 5.7E-33 T 23-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 SUPERFAMILY SSF50465 295 390 4.03E-35 T 23-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site RD1_RS06455 a5c154cd873849db71783ee9cda02ab2 391 Pfam PF00009 Elongation factor Tu GTP binding domain 10 198 8.0E-58 T 23-04-2016 RD1_RS09380 54eb0206e882ec1649f06ba95c2d669f 466 PIRSF PIRSF019251 1 466 1.0E-205 T 23-04-2016 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 RD1_RS09380 54eb0206e882ec1649f06ba95c2d669f 466 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 307 463 4.2E-69 T 23-04-2016 IPR018653 Domain of unknown function DUF2083,transcriptional regulator RD1_RS09380 54eb0206e882ec1649f06ba95c2d669f 466 SUPERFAMILY SSF47413 6 71 5.63E-14 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS09380 54eb0206e882ec1649f06ba95c2d669f 466 PANTHER PTHR10245 9 101 2.8E-12 T 23-04-2016 RD1_RS09380 54eb0206e882ec1649f06ba95c2d669f 466 Pfam PF13560 Helix-turn-helix domain 9 66 3.9E-12 T 23-04-2016 RD1_RS09380 54eb0206e882ec1649f06ba95c2d669f 466 SMART SM00530 11 66 1.9E-13 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS09380 54eb0206e882ec1649f06ba95c2d669f 466 Gene3D G3DSA:1.10.260.40 5 77 6.0E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS09380 54eb0206e882ec1649f06ba95c2d669f 466 Pfam PF06114 Domain of unknown function (DUF955) 200 306 5.1E-13 T 23-04-2016 IPR010359 HTH domain, IrrE-type RD1_RS10255 cee1e260b6de6e4b0a3b3e10c5a4e402 324 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 304 4.8E-22 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RD1_RS10255 cee1e260b6de6e4b0a3b3e10c5a4e402 324 SUPERFAMILY SSF52540 5 253 2.44E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10255 cee1e260b6de6e4b0a3b3e10c5a4e402 324 PANTHER PTHR24220:SF535 7 300 8.2E-136 T 23-04-2016 RD1_RS10255 cee1e260b6de6e4b0a3b3e10c5a4e402 324 Gene3D G3DSA:3.40.50.300 4 257 6.7E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10255 cee1e260b6de6e4b0a3b3e10c5a4e402 324 SMART SM00382 34 233 1.8E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS10255 cee1e260b6de6e4b0a3b3e10c5a4e402 324 PANTHER PTHR24220 7 300 8.2E-136 T 23-04-2016 RD1_RS10255 cee1e260b6de6e4b0a3b3e10c5a4e402 324 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 299 1.2E-18 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RD1_RS10255 cee1e260b6de6e4b0a3b3e10c5a4e402 324 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS10255 cee1e260b6de6e4b0a3b3e10c5a4e402 324 Pfam PF00005 ABC transporter 26 183 1.6E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 573 602 2.7E-43 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 650 677 2.7E-43 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 727 756 2.7E-43 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 679 708 2.7E-43 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 Gene3D G3DSA:1.10.287.950 568 771 9.1E-56 T 23-04-2016 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 SMART SM00304 499 551 2.6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 SMART SM00304 201 254 0.003 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 SUPERFAMILY SSF55785 251 375 2.62E-5 T 23-04-2016 IPR000014 PAS domain RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 Gene3D G3DSA:3.30.450.20 263 375 8.6E-8 T 23-04-2016 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 Pfam PF13188 PAS domain 396 422 0.056 T 23-04-2016 IPR000014 PAS domain RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 SUPERFAMILY SSF58104 519 804 1.44E-68 T 23-04-2016 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 PANTHER PTHR32089 534 802 4.0E-100 T 23-04-2016 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 PANTHER PTHR32089 163 236 4.0E-100 T 23-04-2016 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 SMART SM00283 552 799 8.2E-87 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 609 798 3.1E-57 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 PANTHER PTHR32089:SF63 534 802 4.0E-100 T 23-04-2016 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 PANTHER PTHR32089:SF63 163 236 4.0E-100 T 23-04-2016 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 SUPERFAMILY SSF158472 201 250 7.19E-5 T 23-04-2016 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 Pfam PF00672 HAMP domain 183 251 6.4E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS20485 c5ec2e3e29077973f606349783834a16 848 Pfam PF13426 PAS domain 271 376 2.2E-4 T 23-04-2016 IPR000014 PAS domain RD1_RS07175 22e7f5c5c57b18fb74cb8a1e299d2773 230 SMART SM00419 172 219 1.8E-5 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RD1_RS07175 22e7f5c5c57b18fb74cb8a1e299d2773 230 Pfam PF13545 Crp-like helix-turn-helix domain 157 225 2.8E-13 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RD1_RS07175 22e7f5c5c57b18fb74cb8a1e299d2773 230 SUPERFAMILY SSF46785 155 224 9.54E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07175 22e7f5c5c57b18fb74cb8a1e299d2773 230 SUPERFAMILY SSF51206 9 149 6.15E-25 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RD1_RS07175 22e7f5c5c57b18fb74cb8a1e299d2773 230 PANTHER PTHR24567:SF30 11 229 1.0E-29 T 23-04-2016 RD1_RS07175 22e7f5c5c57b18fb74cb8a1e299d2773 230 Gene3D G3DSA:2.60.120.10 15 150 7.6E-24 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS07175 22e7f5c5c57b18fb74cb8a1e299d2773 230 Pfam PF00027 Cyclic nucleotide-binding domain 38 125 5.0E-18 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS07175 22e7f5c5c57b18fb74cb8a1e299d2773 230 SMART SM00100 19 137 1.4E-17 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS07175 22e7f5c5c57b18fb74cb8a1e299d2773 230 PANTHER PTHR24567 11 229 1.0E-29 T 23-04-2016 RD1_RS07175 22e7f5c5c57b18fb74cb8a1e299d2773 230 Gene3D G3DSA:1.10.10.10 154 227 6.7E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03950 264b831a5d2b93b2ee042659bbfa79a5 240 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS03950 264b831a5d2b93b2ee042659bbfa79a5 240 PANTHER PTHR24220:SF568 6 239 1.6E-116 T 23-04-2016 RD1_RS03950 264b831a5d2b93b2ee042659bbfa79a5 240 Pfam PF00005 ABC transporter 20 165 6.9E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS03950 264b831a5d2b93b2ee042659bbfa79a5 240 PANTHER PTHR24220 6 239 1.6E-116 T 23-04-2016 RD1_RS03950 264b831a5d2b93b2ee042659bbfa79a5 240 SUPERFAMILY SSF52540 4 236 2.33E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03950 264b831a5d2b93b2ee042659bbfa79a5 240 Gene3D G3DSA:3.40.50.300 2 234 3.2E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03950 264b831a5d2b93b2ee042659bbfa79a5 240 SMART SM00382 29 222 4.3E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 SMART SM00304 311 364 5.3E-12 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 SMART SM00388 494 565 7.6E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 PIRSF PIRSF037532 2 730 6.9E-224 T 23-04-2016 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 SUPERFAMILY SSF55785 369 484 1.85E-9 T 23-04-2016 IPR000014 PAS domain RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 608 713 2.4E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 Pfam PF00989 PAS fold 380 483 5.8E-7 T 23-04-2016 IPR013767 PAS fold GO:0006355 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 Gene3D G3DSA:1.10.287.130 490 550 1.3E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 SUPERFAMILY SSF47384 490 563 3.34E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 Pfam PF00672 HAMP domain 293 359 9.5E-16 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 Gene3D G3DSA:3.30.450.20 373 484 1.4E-9 T 23-04-2016 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 PANTHER PTHR24423:SF520 356 714 7.3E-70 T 23-04-2016 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 PANTHER PTHR24423:SF520 3 10 7.3E-70 T 23-04-2016 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 PRINTS PR00344 Bacterial sensor protein C-terminal signature 680 698 9.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 PRINTS PR00344 Bacterial sensor protein C-terminal signature 652 666 9.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 PRINTS PR00344 Bacterial sensor protein C-terminal signature 669 679 9.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 SUPERFAMILY SSF158472 313 360 1.83E-9 T 23-04-2016 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 Gene3D G3DSA:3.30.565.10 551 714 1.0E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 PANTHER PTHR24423 356 714 7.3E-70 T 23-04-2016 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 PANTHER PTHR24423 3 10 7.3E-70 T 23-04-2016 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 Pfam PF00512 His Kinase A (phospho-acceptor) domain 496 562 2.4E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 SMART SM00387 605 726 2.8E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12675 b1cf57b077e641186fe350dc54f80a18 742 SUPERFAMILY SSF55874 558 725 4.45E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS14160 33f58f9f34655da061ec1148e4cb26b2 330 Pfam PF13407 Periplasmic binding protein domain 29 283 8.4E-62 T 23-04-2016 IPR025997 Periplasmic binding protein RD1_RS14160 33f58f9f34655da061ec1148e4cb26b2 330 SUPERFAMILY SSF53822 27 327 7.91E-72 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS14160 33f58f9f34655da061ec1148e4cb26b2 330 PANTHER PTHR32196 25 285 6.5E-85 T 23-04-2016 RD1_RS14160 33f58f9f34655da061ec1148e4cb26b2 330 Gene3D G3DSA:3.40.50.2300 147 280 1.7E-35 T 23-04-2016 RD1_RS14160 33f58f9f34655da061ec1148e4cb26b2 330 Gene3D G3DSA:3.40.50.2300 25 146 1.1E-32 T 23-04-2016 RD1_RS14160 33f58f9f34655da061ec1148e4cb26b2 330 TIGRFAM TIGR02637 RhaS: rhamnose ABC transporter, rhamnose-binding protein 29 327 2.8E-139 T 23-04-2016 IPR013459 Rhamnose-binding protein GO:0015762 RD1_RS14160 33f58f9f34655da061ec1148e4cb26b2 330 PANTHER PTHR32196:SF1 25 285 6.5E-85 T 23-04-2016 IPR030159 Autoinducer 2-binding protein LsrB/rhamnose-binding protein RhaS GO:0043190 RD1_RS00840 2611aa198c54e65d4473ad7e688f1258 751 SMART SM00316 626 709 1.2E-4 T 23-04-2016 IPR022967 RNA-binding domain, S1 RD1_RS00840 2611aa198c54e65d4473ad7e688f1258 751 SMART SM00955 249 580 2.8E-157 T 23-04-2016 RD1_RS00840 2611aa198c54e65d4473ad7e688f1258 751 Pfam PF00575 S1 RNA binding domain 626 680 1.1E-6 T 23-04-2016 IPR003029 S1 domain GO:0003676 RD1_RS00840 2611aa198c54e65d4473ad7e688f1258 751 SUPERFAMILY SSF50249 626 711 9.43E-15 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS00840 2611aa198c54e65d4473ad7e688f1258 751 Gene3D G3DSA:2.40.50.140 628 712 6.7E-13 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS00840 2611aa198c54e65d4473ad7e688f1258 751 Hamap MF_01895 Ribonuclease R [rnr]. 24 709 53.079 T 23-04-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 RD1_RS00840 2611aa198c54e65d4473ad7e688f1258 751 SUPERFAMILY SSF50249 219 625 2.28E-130 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS00840 2611aa198c54e65d4473ad7e688f1258 751 TIGRFAM TIGR02063 RNase_R: ribonuclease R 5 710 1.9E-199 T 23-04-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 RD1_RS00840 2611aa198c54e65d4473ad7e688f1258 751 PANTHER PTHR23355:SF9 199 747 8.8E-155 T 23-04-2016 RD1_RS00840 2611aa198c54e65d4473ad7e688f1258 751 PANTHER PTHR23355 199 747 8.8E-155 T 23-04-2016 RD1_RS00840 2611aa198c54e65d4473ad7e688f1258 751 Pfam PF00773 RNB domain 249 574 8.3E-93 T 23-04-2016 RD1_RS00840 2611aa198c54e65d4473ad7e688f1258 751 ProSitePatterns PS01175 Ribonuclease II family signature. 547 571 - T 23-04-2016 IPR022966 Ribonuclease II/R, conserved site RD1_RS00840 2611aa198c54e65d4473ad7e688f1258 751 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 112 707 1.7E-139 T 23-04-2016 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 RD1_RS02950 905bddc6488c3411ab67cc843af9e1a9 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 3.0E-35 T 23-04-2016 RD1_RS02950 905bddc6488c3411ab67cc843af9e1a9 89 SMART SM01387 8 88 8.2E-49 T 23-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS02950 905bddc6488c3411ab67cc843af9e1a9 89 PANTHER PTHR23321 1 89 1.5E-40 T 23-04-2016 RD1_RS02950 905bddc6488c3411ab67cc843af9e1a9 89 Gene3D G3DSA:1.10.287.10 3 89 1.8E-37 T 23-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 RD1_RS02950 905bddc6488c3411ab67cc843af9e1a9 89 Pfam PF00312 Ribosomal protein S15 8 88 4.5E-35 T 23-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS02950 905bddc6488c3411ab67cc843af9e1a9 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 1.0E-37 T 23-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 RD1_RS02950 905bddc6488c3411ab67cc843af9e1a9 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 23-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS02950 905bddc6488c3411ab67cc843af9e1a9 89 SUPERFAMILY SSF47060 3 89 9.71E-33 T 23-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 RD1_RS02950 905bddc6488c3411ab67cc843af9e1a9 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.376 T 23-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 RD1_RS06705 1e7c84b2c67b904c55ab525ce9ad877b 256 PIRSF PIRSF039085 12 255 3.5E-108 T 23-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RD1_RS06705 1e7c84b2c67b904c55ab525ce9ad877b 256 PANTHER PTHR24220 17 256 1.6E-176 T 23-04-2016 RD1_RS06705 1e7c84b2c67b904c55ab525ce9ad877b 256 Gene3D G3DSA:3.40.50.300 15 251 2.8E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06705 1e7c84b2c67b904c55ab525ce9ad877b 256 Pfam PF00005 ABC transporter 31 179 3.8E-38 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS06705 1e7c84b2c67b904c55ab525ce9ad877b 256 SMART SM00382 40 227 4.0E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS06705 1e7c84b2c67b904c55ab525ce9ad877b 256 PANTHER PTHR24220:SF490 17 256 1.6E-176 T 23-04-2016 RD1_RS06705 1e7c84b2c67b904c55ab525ce9ad877b 256 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS06705 1e7c84b2c67b904c55ab525ce9ad877b 256 SUPERFAMILY SSF52540 16 249 3.64E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08390 7d36a509e4a30b3a679bc35e581bc930 337 PANTHER PTHR11203:SF35 13 213 1.2E-64 T 23-04-2016 RD1_RS08390 7d36a509e4a30b3a679bc35e581bc930 337 TIGRFAM TIGR04122 Xnuc_lig_assoc: putative exonuclease, DNA ligase-associated 7 329 5.0E-141 T 23-04-2016 IPR026360 Putative exonuclease, DNA ligase-associated RD1_RS08390 7d36a509e4a30b3a679bc35e581bc930 337 Gene3D G3DSA:3.60.15.10 30 185 8.1E-13 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS08390 7d36a509e4a30b3a679bc35e581bc930 337 SUPERFAMILY SSF56281 15 322 4.87E-56 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS08390 7d36a509e4a30b3a679bc35e581bc930 337 PANTHER PTHR11203 13 213 1.2E-64 T 23-04-2016 RD1_RS10340 e065c9dd12e2b916a7c4147e96ee27fe 349 Pfam PF07143 CrtC N-terminal lipocalin domain 58 224 5.9E-56 T 23-04-2016 IPR010791 AttH domain RD1_RS10340 e065c9dd12e2b916a7c4147e96ee27fe 349 SUPERFAMILY SSF159245 35 349 2.75E-108 T 23-04-2016 RD1_RS10340 e065c9dd12e2b916a7c4147e96ee27fe 349 Pfam PF17186 Lipocalin-like domain 227 349 4.3E-38 T 23-04-2016 IPR033451 AttH, lipocalin-like domain RD1_RS10340 e065c9dd12e2b916a7c4147e96ee27fe 349 Gene3D G3DSA:2.40.370.10 46 226 2.7E-71 T 23-04-2016 IPR023374 AttH-like domain RD1_RS10340 e065c9dd12e2b916a7c4147e96ee27fe 349 Gene3D G3DSA:2.40.370.10 230 349 4.7E-39 T 23-04-2016 IPR023374 AttH-like domain RD1_RS10340 e065c9dd12e2b916a7c4147e96ee27fe 349 PANTHER PTHR38591 1 349 1.1E-85 T 23-04-2016 RD1_RS10055 6bc810f7ba27754a61dfb7cb760fffaa 290 PANTHER PTHR30514:SF3 1 286 1.0E-35 T 23-04-2016 RD1_RS10055 6bc810f7ba27754a61dfb7cb760fffaa 290 Pfam PF01380 SIS domain 137 259 9.1E-20 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RD1_RS10055 6bc810f7ba27754a61dfb7cb760fffaa 290 Gene3D G3DSA:1.10.10.10 5 82 3.8E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS10055 6bc810f7ba27754a61dfb7cb760fffaa 290 Gene3D G3DSA:3.40.50.10490 113 261 5.9E-16 T 23-04-2016 RD1_RS10055 6bc810f7ba27754a61dfb7cb760fffaa 290 SUPERFAMILY SSF46689 7 82 3.05E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS10055 6bc810f7ba27754a61dfb7cb760fffaa 290 SUPERFAMILY SSF53697 101 261 3.56E-18 T 23-04-2016 RD1_RS10055 6bc810f7ba27754a61dfb7cb760fffaa 290 PANTHER PTHR30514 1 286 1.0E-35 T 23-04-2016 RD1_RS10055 6bc810f7ba27754a61dfb7cb760fffaa 290 Pfam PF01418 Helix-turn-helix domain, rpiR family 8 81 3.2E-14 T 23-04-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 RD1_RS15525 c3686e3988279d062ab491a4bee6815a 659 SUPERFAMILY SSF103088 531 656 3.01E-28 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS15525 c3686e3988279d062ab491a4bee6815a 659 Pfam PF00691 OmpA family 542 650 8.0E-19 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS15525 c3686e3988279d062ab491a4bee6815a 659 PANTHER PTHR30128 523 659 3.0E-29 T 23-04-2016 RD1_RS15525 c3686e3988279d062ab491a4bee6815a 659 Gene3D G3DSA:3.30.1330.60 529 657 1.1E-33 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS02385 2319a925f550ce784c74cb5b67de0a07 342 Pfam PF00107 Zinc-binding dehydrogenase 172 301 3.5E-25 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RD1_RS02385 2319a925f550ce784c74cb5b67de0a07 342 SUPERFAMILY SSF51735 135 306 5.6E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02385 2319a925f550ce784c74cb5b67de0a07 342 Gene3D G3DSA:3.90.180.10 2 164 9.7E-59 T 23-04-2016 IPR011032 GroES-like RD1_RS02385 2319a925f550ce784c74cb5b67de0a07 342 Gene3D G3DSA:3.40.50.720 165 285 3.1E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02385 2319a925f550ce784c74cb5b67de0a07 342 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 131 5.0E-34 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RD1_RS02385 2319a925f550ce784c74cb5b67de0a07 342 SMART SM00829 5 340 4.4E-6 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RD1_RS02385 2319a925f550ce784c74cb5b67de0a07 342 SUPERFAMILY SSF50129 2 171 6.09E-56 T 23-04-2016 IPR011032 GroES-like RD1_RS02385 2319a925f550ce784c74cb5b67de0a07 342 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 RD1_RS02385 2319a925f550ce784c74cb5b67de0a07 342 PANTHER PTHR11695 13 325 3.2E-96 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS00965 520ce203a6ef90294e40902309757783 372 Gene3D G3DSA:3.10.150.10 255 372 5.6E-36 T 23-04-2016 RD1_RS00965 520ce203a6ef90294e40902309757783 372 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 252 371 2.4E-31 T 23-04-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS00965 520ce203a6ef90294e40902309757783 372 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 371 9.9E-95 T 23-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS00965 520ce203a6ef90294e40902309757783 372 SMART SM00480 17 368 2.2E-128 T 23-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS00965 520ce203a6ef90294e40902309757783 372 SUPERFAMILY SSF55979 252 372 1.96E-34 T 23-04-2016 RD1_RS00965 520ce203a6ef90294e40902309757783 372 Gene3D G3DSA:3.10.150.10 126 254 6.5E-34 T 23-04-2016 RD1_RS00965 520ce203a6ef90294e40902309757783 372 SUPERFAMILY SSF55979 1 118 3.56E-24 T 23-04-2016 RD1_RS00965 520ce203a6ef90294e40902309757783 372 SUPERFAMILY SSF55979 127 250 4.08E-26 T 23-04-2016 RD1_RS00965 520ce203a6ef90294e40902309757783 372 PANTHER PTHR30478 2 372 1.5E-122 T 23-04-2016 RD1_RS00965 520ce203a6ef90294e40902309757783 372 Pfam PF02767 DNA polymerase III beta subunit, central domain 131 249 4.1E-30 T 23-04-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS00965 520ce203a6ef90294e40902309757783 372 PIRSF PIRSF000804 1 372 1.6E-121 T 23-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS00965 520ce203a6ef90294e40902309757783 372 Gene3D G3DSA:3.10.150.10 1 119 3.1E-30 T 23-04-2016 RD1_RS00965 520ce203a6ef90294e40902309757783 372 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 3.6E-33 T 23-04-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS08870 af4fe022d5fe1ad99c01180f02951de4 458 Pfam PF03313 Serine dehydratase alpha chain 189 452 2.1E-94 T 23-04-2016 IPR005130 Serine dehydratase-like, alpha subunit RD1_RS08870 af4fe022d5fe1ad99c01180f02951de4 458 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 4 455 2.0E-180 T 23-04-2016 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 RD1_RS08870 af4fe022d5fe1ad99c01180f02951de4 458 Pfam PF03315 Serine dehydratase beta chain 4 155 9.5E-51 T 23-04-2016 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 RD1_RS08870 af4fe022d5fe1ad99c01180f02951de4 458 Gene3D G3DSA:3.30.1330.90 11 156 5.8E-48 T 23-04-2016 IPR029009 Allosteric substrate binding domain RD1_RS08870 af4fe022d5fe1ad99c01180f02951de4 458 PANTHER PTHR30182 1 455 2.3E-195 T 23-04-2016 RD1_RS08870 af4fe022d5fe1ad99c01180f02951de4 458 PANTHER PTHR30182:SF1 1 455 2.3E-195 T 23-04-2016 RD1_RS08870 af4fe022d5fe1ad99c01180f02951de4 458 SUPERFAMILY SSF143548 17 156 1.39E-43 T 23-04-2016 IPR029009 Allosteric substrate binding domain RD1_RS14560 f99075423203c97b1ece2adf67c99074 387 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 2 377 38.071 T 23-04-2016 IPR023023 Deoxyguanosinetriphosphate triphosphohydrolase, type 2 RD1_RS14560 f99075423203c97b1ece2adf67c99074 387 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 25 377 8.9E-95 T 23-04-2016 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 RD1_RS14560 f99075423203c97b1ece2adf67c99074 387 PANTHER PTHR11373 3 377 1.7E-78 T 23-04-2016 RD1_RS14560 f99075423203c97b1ece2adf67c99074 387 PANTHER PTHR11373:SF25 3 377 1.7E-78 T 23-04-2016 RD1_RS14560 f99075423203c97b1ece2adf67c99074 387 Gene3D G3DSA:1.10.3210.10 254 378 3.0E-80 T 23-04-2016 IPR006674 HD domain RD1_RS14560 f99075423203c97b1ece2adf67c99074 387 Gene3D G3DSA:1.10.3210.10 23 216 3.0E-80 T 23-04-2016 IPR006674 HD domain RD1_RS14560 f99075423203c97b1ece2adf67c99074 387 Pfam PF13286 Phosphohydrolase-associated domain 284 375 7.0E-26 T 23-04-2016 IPR026875 Phosphohydrolase-associated domain RD1_RS14560 f99075423203c97b1ece2adf67c99074 387 SUPERFAMILY SSF109604 13 380 5.11E-90 T 23-04-2016 RD1_RS14560 f99075423203c97b1ece2adf67c99074 387 Pfam PF01966 HD domain 62 197 2.8E-14 T 23-04-2016 IPR006674 HD domain RD1_RS14560 f99075423203c97b1ece2adf67c99074 387 SMART SM00471 58 207 7.6E-11 T 23-04-2016 IPR003607 HD/PDEase domain RD1_RS08865 6f407382330f0dfb953aa3bc2f991af9 311 PANTHER PTHR22911 1 307 6.3E-48 T 23-04-2016 RD1_RS08865 6f407382330f0dfb953aa3bc2f991af9 311 SUPERFAMILY SSF103481 43 143 2.09E-13 T 23-04-2016 RD1_RS08865 6f407382330f0dfb953aa3bc2f991af9 311 Pfam PF00892 EamA-like transporter family 8 140 4.2E-12 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS08865 6f407382330f0dfb953aa3bc2f991af9 311 Pfam PF00892 EamA-like transporter family 149 288 1.2E-11 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS08865 6f407382330f0dfb953aa3bc2f991af9 311 SUPERFAMILY SSF103481 195 292 2.62E-12 T 23-04-2016 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 PRINTS PR00987 Glutamyl-tRNA synthetase signature 34 47 4.8E-22 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 PRINTS PR00987 Glutamyl-tRNA synthetase signature 5 17 4.8E-22 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 PRINTS PR00987 Glutamyl-tRNA synthetase signature 181 191 4.8E-22 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 PRINTS PR00987 Glutamyl-tRNA synthetase signature 19 30 4.8E-22 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 PRINTS PR00987 Glutamyl-tRNA synthetase signature 197 205 4.8E-22 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 SUPERFAMILY SSF48163 301 435 1.57E-27 T 23-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 2 440 24.566 T 23-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 SUPERFAMILY SSF52374 3 299 1.31E-91 T 23-04-2016 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 Gene3D G3DSA:3.90.800.10 67 180 2.4E-27 T 23-04-2016 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 305 4.9E-72 T 23-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 Gene3D G3DSA:3.40.50.620 183 232 9.4E-49 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 Gene3D G3DSA:3.40.50.620 3 66 9.4E-49 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 8 19 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 Gene3D G3DSA:1.10.1160.10 235 314 1.5E-13 T 23-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 Gene3D G3DSA:1.10.10.350 366 438 1.6E-12 T 23-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 322 6.6E-94 T 23-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 PANTHER PTHR11451 4 305 2.6E-73 T 23-04-2016 RD1_RS05620 32e439aa45e9c7313f22c1d208a18fb4 441 PANTHER PTHR11451:SF41 4 305 2.6E-73 T 23-04-2016 RD1_RS02805 5d7a7165c5c5e6d628a1ede541000465 387 Gene3D G3DSA:1.10.540.10 5 118 1.0E-22 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS02805 5d7a7165c5c5e6d628a1ede541000465 387 SUPERFAMILY SSF56645 4 243 4.19E-62 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RD1_RS02805 5d7a7165c5c5e6d628a1ede541000465 387 SUPERFAMILY SSF47203 231 383 1.34E-54 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS02805 5d7a7165c5c5e6d628a1ede541000465 387 PANTHER PTHR10909 6 385 4.7E-159 T 23-04-2016 RD1_RS02805 5d7a7165c5c5e6d628a1ede541000465 387 PANTHER PTHR10909:SF278 6 385 4.7E-159 T 23-04-2016 RD1_RS02805 5d7a7165c5c5e6d628a1ede541000465 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 118 6.8E-18 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS02805 5d7a7165c5c5e6d628a1ede541000465 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 221 7.0E-24 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RD1_RS02805 5d7a7165c5c5e6d628a1ede541000465 387 Gene3D G3DSA:2.40.110.10 122 224 1.5E-32 T 23-04-2016 RD1_RS02805 5d7a7165c5c5e6d628a1ede541000465 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 340 359 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RD1_RS02805 5d7a7165c5c5e6d628a1ede541000465 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 381 2.0E-49 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS02805 5d7a7165c5c5e6d628a1ede541000465 387 Gene3D G3DSA:1.20.140.10 225 383 1.7E-61 T 23-04-2016 RD1_RS02805 5d7a7165c5c5e6d628a1ede541000465 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RD1_RS16840 014e1b56df66ac8fda8eee995f69a708 890 Gene3D G3DSA:2.40.40.20 636 787 3.2E-49 T 23-04-2016 RD1_RS16840 014e1b56df66ac8fda8eee995f69a708 890 SUPERFAMILY SSF50692 654 799 1.74E-39 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain RD1_RS16840 014e1b56df66ac8fda8eee995f69a708 890 SUPERFAMILY SSF53706 45 651 1.7E-143 T 23-04-2016 RD1_RS16840 014e1b56df66ac8fda8eee995f69a708 890 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 699 726 - T 23-04-2016 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 RD1_RS16840 014e1b56df66ac8fda8eee995f69a708 890 Pfam PF00384 Molybdopterin oxidoreductase 90 547 2.4E-63 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RD1_RS16840 014e1b56df66ac8fda8eee995f69a708 890 Gene3D G3DSA:3.40.228.10 191 398 7.1E-52 T 23-04-2016 RD1_RS16840 014e1b56df66ac8fda8eee995f69a708 890 Gene3D G3DSA:3.40.50.740 82 187 1.8E-38 T 23-04-2016 RD1_RS16840 014e1b56df66ac8fda8eee995f69a708 890 Gene3D G3DSA:3.40.50.740 399 492 1.8E-38 T 23-04-2016 RD1_RS16840 014e1b56df66ac8fda8eee995f69a708 890 SUPERFAMILY SSF46626 830 886 7.27E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS16840 014e1b56df66ac8fda8eee995f69a708 890 Gene3D G3DSA:3.90.55.10 493 590 2.0E-21 T 23-04-2016 RD1_RS16840 014e1b56df66ac8fda8eee995f69a708 890 PANTHER PTHR11615 54 800 3.2E-165 T 23-04-2016 RD1_RS16840 014e1b56df66ac8fda8eee995f69a708 890 PANTHER PTHR11615:SF19 54 800 3.2E-165 T 23-04-2016 RD1_RS16840 014e1b56df66ac8fda8eee995f69a708 890 Pfam PF01568 Molydopterin dinucleotide binding domain 659 775 5.3E-23 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 RD1_RS17005 d725d1436d7ab3c37334f30e22c2936c 478 Gene3D G3DSA:3.30.420.40 3 241 9.4E-57 T 23-04-2016 RD1_RS17005 d725d1436d7ab3c37334f30e22c2936c 478 PANTHER PTHR10196 1 433 1.5E-143 T 23-04-2016 RD1_RS17005 d725d1436d7ab3c37334f30e22c2936c 478 SUPERFAMILY SSF53067 242 477 5.96E-48 T 23-04-2016 RD1_RS17005 d725d1436d7ab3c37334f30e22c2936c 478 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 126 138 - T 23-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RD1_RS17005 d725d1436d7ab3c37334f30e22c2936c 478 PIRSF PIRSF000538 1 478 4.9E-115 T 23-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RD1_RS17005 d725d1436d7ab3c37334f30e22c2936c 478 SUPERFAMILY SSF53067 3 243 3.98E-64 T 23-04-2016 RD1_RS17005 d725d1436d7ab3c37334f30e22c2936c 478 Gene3D G3DSA:3.30.420.40 243 477 1.2E-40 T 23-04-2016 RD1_RS17005 d725d1436d7ab3c37334f30e22c2936c 478 PANTHER PTHR10196:SF72 1 433 1.5E-143 T 23-04-2016 RD1_RS17005 d725d1436d7ab3c37334f30e22c2936c 478 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 250 433 2.3E-27 T 23-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RD1_RS17005 d725d1436d7ab3c37334f30e22c2936c 478 TIGRFAM TIGR01312 XylB: xylulokinase 4 472 5.3E-153 T 23-04-2016 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 RD1_RS17005 d725d1436d7ab3c37334f30e22c2936c 478 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 240 2.3E-62 T 23-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 Pfam PF00108 Thiolase, N-terminal domain 5 233 5.3E-48 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 Pfam PF02803 Thiolase, C-terminal domain 280 402 6.1E-45 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 SUPERFAMILY SSF53901 281 402 1.33E-39 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 401 7.5E-123 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 SUPERFAMILY SSF53901 3 280 1.39E-58 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 PANTHER PTHR18919:SF12 1 228 4.5E-204 T 23-04-2016 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 PANTHER PTHR18919:SF12 251 403 4.5E-204 T 23-04-2016 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 Gene3D G3DSA:3.40.47.10 3 126 1.7E-53 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 Gene3D G3DSA:3.40.47.10 185 286 1.7E-53 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 ProSitePatterns PS00737 Thiolases signature 2. 349 365 - T 23-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 ProSitePatterns PS00099 Thiolases active site. 384 397 - T 23-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 PANTHER PTHR18919 1 228 4.5E-204 T 23-04-2016 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 PANTHER PTHR18919 251 403 4.5E-204 T 23-04-2016 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 PIRSF PIRSF000429 1 403 9.3E-111 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 23-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 Gene3D G3DSA:3.40.47.10 139 184 7.2E-55 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS18180 f4ed61c10333115f7c29b850035eb56e 403 Gene3D G3DSA:3.40.47.10 287 402 7.2E-55 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS15045 6e671b642aed8089e3571ef4fb004dca 345 PANTHER PTHR11432:SF3 12 336 3.1E-154 T 23-04-2016 RD1_RS15045 6e671b642aed8089e3571ef4fb004dca 345 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 217 230 - T 23-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 RD1_RS15045 6e671b642aed8089e3571ef4fb004dca 345 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 11 332 23.972 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RD1_RS15045 6e671b642aed8089e3571ef4fb004dca 345 Pfam PF00146 NADH dehydrogenase 18 325 2.5E-120 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RD1_RS15045 6e671b642aed8089e3571ef4fb004dca 345 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 57 72 - T 23-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 RD1_RS15045 6e671b642aed8089e3571ef4fb004dca 345 PANTHER PTHR11432 12 336 3.1E-154 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RD1_RS05825 7785dd63acf960efdc18e2ed6be246d3 643 PANTHER PTHR30290:SF2 413 639 1.0E-132 T 23-04-2016 RD1_RS05825 7785dd63acf960efdc18e2ed6be246d3 643 PANTHER PTHR30290:SF2 14 386 1.0E-132 T 23-04-2016 RD1_RS05825 7785dd63acf960efdc18e2ed6be246d3 643 PANTHER PTHR30290 413 639 1.0E-132 T 23-04-2016 RD1_RS05825 7785dd63acf960efdc18e2ed6be246d3 643 PANTHER PTHR30290 14 386 1.0E-132 T 23-04-2016 RD1_RS05825 7785dd63acf960efdc18e2ed6be246d3 643 Gene3D G3DSA:3.10.105.10 353 390 3.8E-40 T 23-04-2016 RD1_RS05825 7785dd63acf960efdc18e2ed6be246d3 643 Gene3D G3DSA:3.10.105.10 424 598 3.8E-40 T 23-04-2016 RD1_RS05825 7785dd63acf960efdc18e2ed6be246d3 643 PIRSF PIRSF002741 20 631 1.3E-66 T 23-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RD1_RS05825 7785dd63acf960efdc18e2ed6be246d3 643 SUPERFAMILY SSF53850 70 628 3.08E-106 T 23-04-2016 RD1_RS05825 7785dd63acf960efdc18e2ed6be246d3 643 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 132 542 5.3E-64 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain RD1_RS05825 7785dd63acf960efdc18e2ed6be246d3 643 Gene3D G3DSA:3.90.76.10 124 195 3.8E-14 T 23-04-2016 RD1_RS05825 7785dd63acf960efdc18e2ed6be246d3 643 Gene3D G3DSA:3.40.190.10 196 352 7.5E-31 T 23-04-2016 RD1_RS15560 c0e638328d6898592efe6e33ecd97ab7 655 PANTHER PTHR23028:SF53 1 527 1.6E-89 T 23-04-2016 RD1_RS15560 c0e638328d6898592efe6e33ecd97ab7 655 Pfam PF01757 Acyltransferase family 4 321 3.0E-28 T 23-04-2016 IPR002656 Acyltransferase 3 GO:0016747 RD1_RS15560 c0e638328d6898592efe6e33ecd97ab7 655 PANTHER PTHR23028 1 527 1.6E-89 T 23-04-2016 RD1_RS13760 9f0b35dc995c24fe384ec0507a711aa5 641 Gene3D G3DSA:1.10.1040.10 505 638 6.9E-45 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS13760 9f0b35dc995c24fe384ec0507a711aa5 641 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 355 631 5.9E-109 T 23-04-2016 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|UniPathway: UPA00362 RD1_RS13760 9f0b35dc995c24fe384ec0507a711aa5 641 SUPERFAMILY SSF52096 242 320 7.73E-62 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS13760 9f0b35dc995c24fe384ec0507a711aa5 641 SUPERFAMILY SSF52096 2 186 7.73E-62 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS13760 9f0b35dc995c24fe384ec0507a711aa5 641 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 355 368 - T 23-04-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 RD1_RS13760 9f0b35dc995c24fe384ec0507a711aa5 641 Gene3D G3DSA:3.40.50.720 348 503 1.8E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13760 9f0b35dc995c24fe384ec0507a711aa5 641 SUPERFAMILY SSF48179 505 634 4.17E-40 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS13760 9f0b35dc995c24fe384ec0507a711aa5 641 Pfam PF16113 Enoyl-CoA hydratase/isomerase 13 322 1.9E-104 T 23-04-2016 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 RD1_RS13760 9f0b35dc995c24fe384ec0507a711aa5 641 SUPERFAMILY SSF51735 351 503 1.16E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13760 9f0b35dc995c24fe384ec0507a711aa5 641 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 352 503 5.1E-44 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 RD1_RS13760 9f0b35dc995c24fe384ec0507a711aa5 641 PANTHER PTHR22981 349 630 3.4E-113 T 23-04-2016 RD1_RS13760 9f0b35dc995c24fe384ec0507a711aa5 641 Gene3D G3DSA:1.10.12.10 258 318 1.4E-5 T 23-04-2016 IPR014748 Crontonase, C-terminal RD1_RS13760 9f0b35dc995c24fe384ec0507a711aa5 641 Gene3D G3DSA:3.90.226.10 2 190 5.2E-50 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS13760 9f0b35dc995c24fe384ec0507a711aa5 641 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 506 631 1.6E-40 T 23-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 16 712 3.9E-268 T 23-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 SUPERFAMILY SSF55326 12 194 4.93E-52 T 23-04-2016 RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 Pfam PF00586 AIR synthase related protein, N-terminal domain 443 550 1.8E-20 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 Pfam PF00586 AIR synthase related protein, N-terminal domain 85 186 5.9E-24 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 SUPERFAMILY SSF56042 199 418 5.83E-54 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 Gene3D G3DSA:3.90.650.10 211 354 6.1E-4 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 PANTHER PTHR10099:SF2 16 714 6.6E-285 T 23-04-2016 RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 SUPERFAMILY SSF56042 562 693 5.98E-25 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 SUPERFAMILY SSF55326 384 555 5.89E-47 T 23-04-2016 RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 PANTHER PTHR10099 16 714 6.6E-285 T 23-04-2016 RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 719 305.985 T 23-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 Gene3D G3DSA:3.30.1330.10 48 192 7.8E-50 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 Gene3D G3DSA:3.30.1330.10 406 552 1.6E-51 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 PIRSF PIRSF001587 2 719 4.1E-271 T 23-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 Pfam PF02769 AIR synthase related protein, C-terminal domain 201 349 1.7E-32 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RD1_RS14840 e80cf9d2edadc6bda13eeabb440e6202 719 Pfam PF02769 AIR synthase related protein, C-terminal domain 563 692 1.2E-12 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RD1_RS14990 e2b4de4bad676e9a742ea680204a4a6a 555 PANTHER PTHR11203 1 507 5.6E-137 T 23-04-2016 RD1_RS14990 e2b4de4bad676e9a742ea680204a4a6a 555 SUPERFAMILY SSF56281 10 423 9.43E-75 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS14990 e2b4de4bad676e9a742ea680204a4a6a 555 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 366 409 1.1E-6 T 23-04-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain RD1_RS14990 e2b4de4bad676e9a742ea680204a4a6a 555 PANTHER PTHR11203:SF22 1 507 5.6E-137 T 23-04-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 RD1_RS14990 e2b4de4bad676e9a742ea680204a4a6a 555 ProSitePatterns PS01292 Uncharacterized protein family UPF0036 signature. 366 394 - T 23-04-2016 IPR001587 Ribonuclease J, conserved site RD1_RS14990 e2b4de4bad676e9a742ea680204a4a6a 555 SMART SM00849 18 206 4.7E-18 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS14990 e2b4de4bad676e9a742ea680204a4a6a 555 Gene3D G3DSA:3.60.15.10 8 259 9.0E-64 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS14990 e2b4de4bad676e9a742ea680204a4a6a 555 Pfam PF00753 Metallo-beta-lactamase superfamily 20 194 1.9E-14 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS13150 bed1a8aa00f40b2beec9ad7bbd63d85b 421 SMART SM00382 110 263 9.1E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS13150 bed1a8aa00f40b2beec9ad7bbd63d85b 421 Gene3D G3DSA:1.10.8.60 314 415 1.9E-37 T 23-04-2016 RD1_RS13150 bed1a8aa00f40b2beec9ad7bbd63d85b 421 PANTHER PTHR11262 4 415 2.0E-248 T 23-04-2016 RD1_RS13150 bed1a8aa00f40b2beec9ad7bbd63d85b 421 Gene3D G3DSA:3.40.50.300 65 252 2.3E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13150 bed1a8aa00f40b2beec9ad7bbd63d85b 421 Gene3D G3DSA:3.40.50.300 291 307 2.3E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13150 bed1a8aa00f40b2beec9ad7bbd63d85b 421 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 10 408 9.3E-198 T 23-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RD1_RS13150 bed1a8aa00f40b2beec9ad7bbd63d85b 421 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 3 412 53.014 T 23-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RD1_RS13150 bed1a8aa00f40b2beec9ad7bbd63d85b 421 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 314 385 3.3E-17 T 23-04-2016 IPR019489 Clp ATPase, C-terminal RD1_RS13150 bed1a8aa00f40b2beec9ad7bbd63d85b 421 Pfam PF07724 AAA domain (Cdc48 subfamily) 111 307 6.2E-49 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RD1_RS13150 bed1a8aa00f40b2beec9ad7bbd63d85b 421 SMART SM00994 12 51 1.7E-24 T 23-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RD1_RS13150 bed1a8aa00f40b2beec9ad7bbd63d85b 421 SUPERFAMILY SSF57716 13 48 1.18E-11 T 23-04-2016 RD1_RS13150 bed1a8aa00f40b2beec9ad7bbd63d85b 421 SUPERFAMILY SSF52540 61 394 4.82E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13150 bed1a8aa00f40b2beec9ad7bbd63d85b 421 Pfam PF06689 ClpX C4-type zinc finger 13 50 2.6E-20 T 23-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RD1_RS13150 bed1a8aa00f40b2beec9ad7bbd63d85b 421 SMART SM01086 314 409 9.6E-33 T 23-04-2016 IPR019489 Clp ATPase, C-terminal RD1_RS07920 55ab4fe75e1c37383c470fc30fe706f5 361 PIRSF PIRSF039026 1 357 1.8E-129 T 23-04-2016 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like RD1_RS07920 55ab4fe75e1c37383c470fc30fe706f5 361 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 46 319 1.4E-42 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS07920 55ab4fe75e1c37383c470fc30fe706f5 361 PANTHER PTHR33376 1 342 9.1E-92 T 23-04-2016 RD1_RS07920 55ab4fe75e1c37383c470fc30fe706f5 361 PANTHER PTHR33376:SF5 1 342 9.1E-92 T 23-04-2016 RD1_RS07920 55ab4fe75e1c37383c470fc30fe706f5 361 SUPERFAMILY SSF53850 121 221 2.48E-5 T 23-04-2016 RD1_RS02770 4277bf2647341dcb083b5d720d58fad5 95 SUPERFAMILY SSF47729 5 94 2.5E-26 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RD1_RS02770 4277bf2647341dcb083b5d720d58fad5 95 Gene3D G3DSA:4.10.520.10 4 95 3.7E-27 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RD1_RS02770 4277bf2647341dcb083b5d720d58fad5 95 SMART SM00411 5 94 2.5E-21 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RD1_RS02770 4277bf2647341dcb083b5d720d58fad5 95 Pfam PF00216 Bacterial DNA-binding protein 5 94 2.0E-24 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RD1_RS02770 4277bf2647341dcb083b5d720d58fad5 95 PANTHER PTHR33175 5 95 3.3E-25 T 23-04-2016 RD1_RS14885 9fcd411bdaf88f92bdf174c72d0c3811 248 SUPERFAMILY SSF52540 1 233 6.66E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14885 9fcd411bdaf88f92bdf174c72d0c3811 248 PANTHER PTHR24220 3 248 2.6E-110 T 23-04-2016 RD1_RS14885 9fcd411bdaf88f92bdf174c72d0c3811 248 Pfam PF00005 ABC transporter 17 164 4.0E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS14885 9fcd411bdaf88f92bdf174c72d0c3811 248 Gene3D G3DSA:3.40.50.300 1 236 6.7E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14885 9fcd411bdaf88f92bdf174c72d0c3811 248 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS14885 9fcd411bdaf88f92bdf174c72d0c3811 248 SMART SM00382 26 213 3.8E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS14885 9fcd411bdaf88f92bdf174c72d0c3811 248 PANTHER PTHR24220:SF567 3 248 2.6E-110 T 23-04-2016 RD1_RS18980 992d2ec4b9d29807f98e600c9a419ae5 472 Pfam PF09349 OHCU decarboxylase 309 466 1.2E-42 T 23-04-2016 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|UniPathway: UPA00394 RD1_RS18980 992d2ec4b9d29807f98e600c9a419ae5 472 PANTHER PTHR10587:SF72 12 337 3.1E-146 T 23-04-2016 RD1_RS18980 992d2ec4b9d29807f98e600c9a419ae5 472 SUPERFAMILY SSF88713 6 300 8.23E-88 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RD1_RS18980 992d2ec4b9d29807f98e600c9a419ae5 472 Gene3D G3DSA:3.20.20.370 5 301 9.6E-101 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RD1_RS18980 992d2ec4b9d29807f98e600c9a419ae5 472 Pfam PF01522 Polysaccharide deacetylase 85 182 1.9E-9 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RD1_RS18980 992d2ec4b9d29807f98e600c9a419ae5 472 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 6 300 2.5E-152 T 23-04-2016 IPR017625 Putative urate catabolism protein RD1_RS18980 992d2ec4b9d29807f98e600c9a419ae5 472 SUPERFAMILY SSF158694 309 471 3.53E-52 T 23-04-2016 RD1_RS18980 992d2ec4b9d29807f98e600c9a419ae5 472 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 310 467 6.0E-63 T 23-04-2016 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|UniPathway: UPA00394 RD1_RS18980 992d2ec4b9d29807f98e600c9a419ae5 472 Gene3D G3DSA:1.10.3330.10 310 470 8.2E-59 T 23-04-2016 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|UniPathway: UPA00394 RD1_RS18980 992d2ec4b9d29807f98e600c9a419ae5 472 PANTHER PTHR10587 12 337 3.1E-146 T 23-04-2016 RD1_RS15135 c336955aa22ab279fd3a5201be80676b 290 SUPERFAMILY SSF51569 6 286 4.25E-64 T 23-04-2016 RD1_RS15135 c336955aa22ab279fd3a5201be80676b 290 Pfam PF00682 HMGL-like 7 278 4.2E-44 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 RD1_RS15135 c336955aa22ab279fd3a5201be80676b 290 Gene3D G3DSA:3.20.20.70 6 288 4.5E-78 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS15135 c336955aa22ab279fd3a5201be80676b 290 PANTHER PTHR10277 8 275 3.1E-136 T 23-04-2016 RD1_RS15135 c336955aa22ab279fd3a5201be80676b 290 PANTHER PTHR10277:SF40 8 275 3.1E-136 T 23-04-2016 RD1_RS16935 4bf7a29d6d7f6d6dc889b0068d60143b 267 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 14 220 4.2E-25 T 23-04-2016 IPR008775 Phytanoyl-CoA dioxygenase RD1_RS16935 4bf7a29d6d7f6d6dc889b0068d60143b 267 PANTHER PTHR20883:SF11 6 242 1.1E-55 T 23-04-2016 RD1_RS16935 4bf7a29d6d7f6d6dc889b0068d60143b 267 SUPERFAMILY SSF51197 5 262 2.01E-61 T 23-04-2016 RD1_RS16935 4bf7a29d6d7f6d6dc889b0068d60143b 267 Gene3D G3DSA:2.60.120.620 5 242 1.4E-55 T 23-04-2016 RD1_RS16935 4bf7a29d6d7f6d6dc889b0068d60143b 267 PANTHER PTHR20883 6 242 1.1E-55 T 23-04-2016 RD1_RS18690 d5e9dff33c0ed482c60639783d1373be 81 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 1 81 9.7E-23 T 23-04-2016 IPR010034 Molybdopterin converting factor, subunit 1 GO:0006777 UniPathway: UPA00344 RD1_RS18690 d5e9dff33c0ed482c60639783d1373be 81 Gene3D G3DSA:3.10.20.30 1 81 1.1E-20 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS18690 d5e9dff33c0ed482c60639783d1373be 81 PANTHER PTHR33359 1 81 3.5E-19 T 23-04-2016 RD1_RS18690 d5e9dff33c0ed482c60639783d1373be 81 SUPERFAMILY SSF54285 1 81 1.49E-19 T 23-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RD1_RS18690 d5e9dff33c0ed482c60639783d1373be 81 Pfam PF02597 ThiS family 3 81 5.8E-16 T 23-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 RD1_RS03210 4a71b34aaf52539aa91b23eb848f9ad2 350 PIRSF PIRSF018250 1 350 4.1E-144 T 23-04-2016 IPR027281 Saccharopine dehydrogenase [NAD(+), L-lysine-forming] GO:0004754|GO:0009085 KEGG: 00300+1.5.1.7|KEGG: 00310+1.5.1.7|UniPathway: UPA00033 RD1_RS03210 4a71b34aaf52539aa91b23eb848f9ad2 350 PANTHER PTHR11133 2 347 6.3E-93 T 23-04-2016 RD1_RS03210 4a71b34aaf52539aa91b23eb848f9ad2 350 Gene3D G3DSA:3.40.50.1770 3 199 2.2E-32 T 23-04-2016 RD1_RS03210 4a71b34aaf52539aa91b23eb848f9ad2 350 SMART SM01003 5 139 5.5E-33 T 23-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RD1_RS03210 4a71b34aaf52539aa91b23eb848f9ad2 350 SUPERFAMILY SSF52283 310 339 4.42E-30 T 23-04-2016 RD1_RS03210 4a71b34aaf52539aa91b23eb848f9ad2 350 SUPERFAMILY SSF52283 3 138 4.42E-30 T 23-04-2016 RD1_RS03210 4a71b34aaf52539aa91b23eb848f9ad2 350 SUPERFAMILY SSF51735 179 308 2.26E-10 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03210 4a71b34aaf52539aa91b23eb848f9ad2 350 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 5 139 6.2E-27 T 23-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RD1_RS03210 4a71b34aaf52539aa91b23eb848f9ad2 350 SMART SM01002 169 302 9.8E-5 T 23-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RD1_RS13550 6dea45e134fa80d7a711dc651611079a 221 SMART SM00448 1 112 9.7E-33 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS13550 6dea45e134fa80d7a711dc651611079a 221 Gene3D G3DSA:1.10.10.10 124 219 8.6E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS13550 6dea45e134fa80d7a711dc651611079a 221 SMART SM00862 145 218 1.5E-21 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS13550 6dea45e134fa80d7a711dc651611079a 221 Gene3D G3DSA:3.40.50.2300 1 123 4.6E-36 T 23-04-2016 RD1_RS13550 6dea45e134fa80d7a711dc651611079a 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 218 4.4E-20 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS13550 6dea45e134fa80d7a711dc651611079a 221 Pfam PF00072 Response regulator receiver domain 4 111 1.8E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS13550 6dea45e134fa80d7a711dc651611079a 221 SUPERFAMILY SSF52172 1 173 1.41E-36 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS13550 6dea45e134fa80d7a711dc651611079a 221 PANTHER PTHR26402:SF518 1 219 1.7E-73 T 23-04-2016 RD1_RS13550 6dea45e134fa80d7a711dc651611079a 221 PANTHER PTHR26402 1 219 1.7E-73 T 23-04-2016 RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 Gene3D G3DSA:2.140.10.10 14 600 1.0E-158 T 23-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 PANTHER PTHR32303 400 567 3.0E-233 T 23-04-2016 RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 PANTHER PTHR32303 238 359 3.0E-233 T 23-04-2016 RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 PANTHER PTHR32303 1 216 3.0E-233 T 23-04-2016 RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 SUPERFAMILY SSF50998 28 597 4.06E-169 T 23-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 SMART SM00564 176 214 9.5 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 SMART SM00564 262 310 180.0 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 SMART SM00564 79 112 72.0 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 SMART SM00564 131 163 0.95 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 SMART SM00564 498 529 0.0079 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 Pfam PF01011 PQQ enzyme repeat 503 536 3.4E-5 T 23-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 Pfam PF13360 PQQ-like domain 64 215 1.4E-11 T 23-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 17 557 1.8E-225 T 23-04-2016 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 PANTHER PTHR32303:SF6 400 567 3.0E-233 T 23-04-2016 RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 PANTHER PTHR32303:SF6 238 359 3.0E-233 T 23-04-2016 RD1_RS04090 7957ca139d984ddb5ee10c7026592145 600 PANTHER PTHR32303:SF6 1 216 3.0E-233 T 23-04-2016 RD1_RS14920 5c983308ff81f133ab289bf0f7a7b515 216 SUPERFAMILY SSF53335 10 212 5.05E-45 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS14920 5c983308ff81f133ab289bf0f7a7b515 216 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 10 210 9.9E-58 T 23-04-2016 RD1_RS14920 5c983308ff81f133ab289bf0f7a7b515 216 Gene3D G3DSA:3.40.50.150 17 211 3.0E-57 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS14920 5c983308ff81f133ab289bf0f7a7b515 216 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 134 149 - T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RD1_RS14920 5c983308ff81f133ab289bf0f7a7b515 216 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 5 214 35.064 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RD1_RS14920 5c983308ff81f133ab289bf0f7a7b515 216 PANTHER PTHR11579 17 208 7.8E-65 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RD1_RS14920 5c983308ff81f133ab289bf0f7a7b515 216 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 7 211 6.7E-59 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RD1_RS07385 a41fa0387ba4be3dbd86ef88d5897254 243 SMART SM00563 70 184 1.7E-26 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RD1_RS07385 a41fa0387ba4be3dbd86ef88d5897254 243 SUPERFAMILY SSF69593 39 229 5.75E-27 T 23-04-2016 RD1_RS07385 a41fa0387ba4be3dbd86ef88d5897254 243 Pfam PF01553 Acyltransferase 64 180 2.2E-14 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RD1_RS07385 a41fa0387ba4be3dbd86ef88d5897254 243 Gene3D G3DSA:3.40.1130.10 68 209 2.5E-8 T 23-04-2016 RD1_RS07385 a41fa0387ba4be3dbd86ef88d5897254 243 PANTHER PTHR10434 1 234 1.4E-29 T 23-04-2016 RD1_RS06650 27cf766ae7357b62422c24dbc60000f7 129 PANTHER PTHR11759 11 129 2.0E-66 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RD1_RS06650 27cf766ae7357b62422c24dbc60000f7 129 SUPERFAMILY SSF53137 14 129 4.97E-47 T 23-04-2016 RD1_RS06650 27cf766ae7357b62422c24dbc60000f7 129 Gene3D G3DSA:3.30.420.80 6 129 5.7E-54 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RD1_RS06650 27cf766ae7357b62422c24dbc60000f7 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 32.323 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RD1_RS06650 27cf766ae7357b62422c24dbc60000f7 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 23-04-2016 IPR018102 Ribosomal S11, conserved site RD1_RS06650 27cf766ae7357b62422c24dbc60000f7 129 Pfam PF00411 Ribosomal protein S11 19 128 7.7E-49 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RD1_RS06650 27cf766ae7357b62422c24dbc60000f7 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 1.8E-54 T 23-04-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06650 27cf766ae7357b62422c24dbc60000f7 129 PIRSF PIRSF002131 1 129 7.7E-51 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RD1_RS07765 817b150c7be35d3c1c0e4da01257bd26 99 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 1.2E-23 T 23-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS07765 817b150c7be35d3c1c0e4da01257bd26 99 Gene3D G3DSA:2.30.170.40 2 77 2.8E-32 T 23-04-2016 RD1_RS07765 817b150c7be35d3c1c0e4da01257bd26 99 PANTHER PTHR13528 1 78 4.9E-30 T 23-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 RD1_RS07765 817b150c7be35d3c1c0e4da01257bd26 99 SUPERFAMILY SSF143800 1 83 3.66E-29 T 23-04-2016 RD1_RS07765 817b150c7be35d3c1c0e4da01257bd26 99 Pfam PF00830 Ribosomal L28 family 3 61 3.2E-25 T 23-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 RD1_RS07765 817b150c7be35d3c1c0e4da01257bd26 99 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 68 21.265 T 23-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS19315 6c50329ea990b96eef2eba4f1a6e253c 588 Gene3D G3DSA:2.40.50.230 381 450 2.9E-15 T 23-04-2016 IPR006531 Gp5 N-terminal RD1_RS19315 6c50329ea990b96eef2eba4f1a6e253c 588 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 30 496 2.7E-37 T 23-04-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RD1_RS19315 6c50329ea990b96eef2eba4f1a6e253c 588 SUPERFAMILY SSF69279 66 185 9.35E-13 T 23-04-2016 RD1_RS19315 6c50329ea990b96eef2eba4f1a6e253c 588 SUPERFAMILY SSF69255 372 450 1.18E-17 T 23-04-2016 RD1_RS18955 0312f5f82b152fed8b78d891b55ebe13 292 PANTHER PTHR30126 4 290 1.7E-125 T 23-04-2016 RD1_RS18955 0312f5f82b152fed8b78d891b55ebe13 292 Gene3D G3DSA:3.40.190.10 197 256 5.4E-11 T 23-04-2016 RD1_RS18955 0312f5f82b152fed8b78d891b55ebe13 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 2.0E-22 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS18955 0312f5f82b152fed8b78d891b55ebe13 292 SUPERFAMILY SSF46785 3 85 1.52E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18955 0312f5f82b152fed8b78d891b55ebe13 292 PANTHER PTHR30126:SF23 4 290 1.7E-125 T 23-04-2016 RD1_RS18955 0312f5f82b152fed8b78d891b55ebe13 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 4.2E-9 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS18955 0312f5f82b152fed8b78d891b55ebe13 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 4.2E-9 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS18955 0312f5f82b152fed8b78d891b55ebe13 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 4.2E-9 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS18955 0312f5f82b152fed8b78d891b55ebe13 292 SUPERFAMILY SSF53850 91 288 6.88E-27 T 23-04-2016 RD1_RS18955 0312f5f82b152fed8b78d891b55ebe13 292 Gene3D G3DSA:1.10.10.10 3 81 1.2E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18955 0312f5f82b152fed8b78d891b55ebe13 292 Gene3D G3DSA:3.40.190.10 87 196 3.6E-10 T 23-04-2016 RD1_RS18955 0312f5f82b152fed8b78d891b55ebe13 292 Pfam PF03466 LysR substrate binding domain 89 288 6.6E-27 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 Pfam PF17092 Penicillin-binding protein OB-like domain 329 453 1.1E-22 T 23-04-2016 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00230+2.4.2.-|KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00514+2.4.2.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.-|UniPathway: UPA00219 RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 PANTHER PTHR32282 657 834 5.8E-209 T 23-04-2016 RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 PANTHER PTHR32282 16 322 5.8E-209 T 23-04-2016 RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 PANTHER PTHR32282:SF5 657 834 5.8E-209 T 23-04-2016 RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 PANTHER PTHR32282:SF5 16 322 5.8E-209 T 23-04-2016 RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 Pfam PF00905 Penicillin binding protein transpeptidase domain 455 745 3.2E-33 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 PANTHER PTHR32282 449 636 5.8E-209 T 23-04-2016 RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 PANTHER PTHR32282:SF5 449 636 5.8E-209 T 23-04-2016 RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 SUPERFAMILY SSF53955 47 255 5.91E-69 T 23-04-2016 IPR023346 Lysozyme-like domain RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 Gene3D G3DSA:1.10.3810.10 60 237 7.2E-70 T 23-04-2016 RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 Gene3D G3DSA:2.40.50.140 365 449 7.0E-5 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 SUPERFAMILY SSF56601 273 325 1.66E-123 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 SUPERFAMILY SSF56601 450 798 1.66E-123 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 SUPERFAMILY SSF56601 217 239 1.66E-123 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 70 750 2.1E-178 T 23-04-2016 RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 Pfam PF00912 Transglycosylase 60 235 7.6E-60 T 23-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 Gene3D G3DSA:3.40.710.10 450 796 2.9E-131 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS12965 ccd2b3e0c54750ef489ced8be5387a65 851 Gene3D G3DSA:3.40.710.10 238 325 2.9E-131 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS09335 65c306896aa09e8d5a330a77d94c5526 246 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 3.5E-97 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like RD1_RS09335 65c306896aa09e8d5a330a77d94c5526 246 SUPERFAMILY SSF75625 3 246 1.11E-95 T 23-04-2016 IPR029072 YebC-like RD1_RS09335 65c306896aa09e8d5a330a77d94c5526 246 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 238 35.025 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like RD1_RS09335 65c306896aa09e8d5a330a77d94c5526 246 PANTHER PTHR12532 1 240 6.5E-111 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like RD1_RS09335 65c306896aa09e8d5a330a77d94c5526 246 Gene3D G3DSA:3.30.1270.10 211 246 2.7E-42 T 23-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 RD1_RS09335 65c306896aa09e8d5a330a77d94c5526 246 Gene3D G3DSA:3.30.1270.10 81 135 2.7E-42 T 23-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 RD1_RS09335 65c306896aa09e8d5a330a77d94c5526 246 Pfam PF01709 Transcriptional regulator 5 236 3.6E-95 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like RD1_RS09335 65c306896aa09e8d5a330a77d94c5526 246 Gene3D G3DSA:3.30.70.980 136 204 1.5E-25 T 23-04-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 RD1_RS09335 65c306896aa09e8d5a330a77d94c5526 246 Gene3D G3DSA:1.10.10.200 1 80 8.9E-37 T 23-04-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like RD1_RS07060 1d843fe0b5d32b30a4818fd93fccd9aa 329 Pfam PF16868 NMT1-like family 35 322 8.5E-32 T 23-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RD1_RS07060 1d843fe0b5d32b30a4818fd93fccd9aa 329 Gene3D G3DSA:3.40.190.10 131 260 6.1E-19 T 23-04-2016 RD1_RS07060 1d843fe0b5d32b30a4818fd93fccd9aa 329 Gene3D G3DSA:3.40.190.10 261 327 1.0E-25 T 23-04-2016 RD1_RS07060 1d843fe0b5d32b30a4818fd93fccd9aa 329 Gene3D G3DSA:3.40.190.10 29 108 1.0E-25 T 23-04-2016 RD1_RS07060 1d843fe0b5d32b30a4818fd93fccd9aa 329 SUPERFAMILY SSF53850 29 328 1.44E-38 T 23-04-2016 RD1_RS07060 1d843fe0b5d32b30a4818fd93fccd9aa 329 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 4 326 1.2E-35 T 23-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RD1_RS02055 50e60151543e38045e9614edd978c82f 166 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 135 153 9.9E-21 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RD1_RS02055 50e60151543e38045e9614edd978c82f 166 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 109 131 9.9E-21 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RD1_RS02055 50e60151543e38045e9614edd978c82f 166 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 22 39 9.9E-21 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RD1_RS02055 50e60151543e38045e9614edd978c82f 166 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 85 105 9.9E-21 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RD1_RS02055 50e60151543e38045e9614edd978c82f 166 SUPERFAMILY SSF54611 9 153 8.94E-52 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RD1_RS02055 50e60151543e38045e9614edd978c82f 166 Gene3D G3DSA:3.10.420.10 12 161 1.5E-53 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RD1_RS02055 50e60151543e38045e9614edd978c82f 166 PANTHER PTHR36918:SF1 3 166 1.1E-38 T 23-04-2016 RD1_RS02055 50e60151543e38045e9614edd978c82f 166 PANTHER PTHR36918 3 166 1.1E-38 T 23-04-2016 RD1_RS02055 50e60151543e38045e9614edd978c82f 166 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 15 155 6.0E-32 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RD1_RS02055 50e60151543e38045e9614edd978c82f 166 Pfam PF02556 Preprotein translocase subunit SecB 14 155 3.3E-49 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RD1_RS02055 50e60151543e38045e9614edd978c82f 166 Hamap MF_00821 Protein-export protein SecB [secB]. 1 157 28.068 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RD1_RS18280 002a45230e7b94e177ebde099c297e21 103 Pfam PF07883 Cupin domain 34 86 2.1E-11 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RD1_RS18280 002a45230e7b94e177ebde099c297e21 103 Gene3D G3DSA:2.60.120.10 6 103 1.5E-24 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS18280 002a45230e7b94e177ebde099c297e21 103 PANTHER PTHR40112 1 103 7.8E-16 T 23-04-2016 RD1_RS18280 002a45230e7b94e177ebde099c297e21 103 PIRSF PIRSF029883 2 103 1.2E-27 T 23-04-2016 IPR025499 Pectin degradation protein KdgF UniPathway: UPA00545 RD1_RS18280 002a45230e7b94e177ebde099c297e21 103 SUPERFAMILY SSF51182 5 99 1.49E-19 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS18280 002a45230e7b94e177ebde099c297e21 103 PANTHER PTHR40112:SF1 1 103 7.8E-16 T 23-04-2016 RD1_RS19415 19ea009c95df04dcd27e4a32bbc48eb3 200 PANTHER PTHR26402:SF570 1 188 2.3E-26 T 23-04-2016 RD1_RS19415 19ea009c95df04dcd27e4a32bbc48eb3 200 PANTHER PTHR26402 1 188 2.3E-26 T 23-04-2016 RD1_RS19415 19ea009c95df04dcd27e4a32bbc48eb3 200 Pfam PF00072 Response regulator receiver domain 4 109 9.2E-10 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS19415 19ea009c95df04dcd27e4a32bbc48eb3 200 SUPERFAMILY SSF52172 4 121 1.32E-12 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS19415 19ea009c95df04dcd27e4a32bbc48eb3 200 SMART SM00421 134 191 2.2E-22 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS19415 19ea009c95df04dcd27e4a32bbc48eb3 200 SUPERFAMILY SSF46894 121 193 6.46E-20 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RD1_RS19415 19ea009c95df04dcd27e4a32bbc48eb3 200 Gene3D G3DSA:1.10.10.10 139 193 2.4E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS19415 19ea009c95df04dcd27e4a32bbc48eb3 200 Pfam PF00196 Bacterial regulatory proteins, luxR family 136 189 8.0E-21 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS19415 19ea009c95df04dcd27e4a32bbc48eb3 200 Gene3D G3DSA:3.40.50.2300 4 138 2.7E-13 T 23-04-2016 RD1_RS19415 19ea009c95df04dcd27e4a32bbc48eb3 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 179 1.9E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS19415 19ea009c95df04dcd27e4a32bbc48eb3 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 137 151 1.9E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS19415 19ea009c95df04dcd27e4a32bbc48eb3 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 167 1.9E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS08410 8a68936bece77139adc386359744f18d 944 PANTHER PTHR12131:SF4 11 275 1.6E-96 T 23-04-2016 RD1_RS08410 8a68936bece77139adc386359744f18d 944 SUPERFAMILY SSF52540 7 117 2.85E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08410 8a68936bece77139adc386359744f18d 944 Pfam PF00271 Helicase conserved C-terminal domain 164 265 1.8E-9 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS08410 8a68936bece77139adc386359744f18d 944 PANTHER PTHR12131 11 275 1.6E-96 T 23-04-2016 RD1_RS08410 8a68936bece77139adc386359744f18d 944 SUPERFAMILY SSF52540 136 391 6.3E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08410 8a68936bece77139adc386359744f18d 944 Gene3D G3DSA:3.40.50.300 168 270 4.0E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08410 8a68936bece77139adc386359744f18d 944 SMART SM00490 177 266 1.7E-15 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS10175 fb6d7d30f15dd929937a1bdaf5fc25d6 468 Gene3D G3DSA:1.10.260.40 5 70 2.4E-14 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS10175 fb6d7d30f15dd929937a1bdaf5fc25d6 468 Pfam PF01381 Helix-turn-helix 10 61 2.8E-9 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS10175 fb6d7d30f15dd929937a1bdaf5fc25d6 468 PANTHER PTHR10245 6 96 6.2E-12 T 23-04-2016 RD1_RS10175 fb6d7d30f15dd929937a1bdaf5fc25d6 468 SMART SM00530 9 64 4.4E-10 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS10175 fb6d7d30f15dd929937a1bdaf5fc25d6 468 Pfam PF06114 Domain of unknown function (DUF955) 187 309 3.0E-17 T 23-04-2016 IPR010359 HTH domain, IrrE-type RD1_RS10175 fb6d7d30f15dd929937a1bdaf5fc25d6 468 PIRSF PIRSF019251 1 468 2.0E-143 T 23-04-2016 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 RD1_RS10175 fb6d7d30f15dd929937a1bdaf5fc25d6 468 SUPERFAMILY SSF47413 1 69 1.29E-12 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS10175 fb6d7d30f15dd929937a1bdaf5fc25d6 468 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 310 466 1.5E-57 T 23-04-2016 IPR018653 Domain of unknown function DUF2083,transcriptional regulator RD1_RS10935 111aac937ea683ec265104b3efc70407 346 Gene3D G3DSA:3.40.50.2300 37 181 3.3E-26 T 23-04-2016 RD1_RS10935 111aac937ea683ec265104b3efc70407 346 PANTHER PTHR32196:SF9 28 339 7.0E-20 T 23-04-2016 RD1_RS10935 111aac937ea683ec265104b3efc70407 346 Gene3D G3DSA:3.40.50.2300 203 305 1.6E-10 T 23-04-2016 RD1_RS10935 111aac937ea683ec265104b3efc70407 346 SUPERFAMILY SSF53822 35 310 5.07E-44 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS10935 111aac937ea683ec265104b3efc70407 346 PANTHER PTHR32196 28 339 7.0E-20 T 23-04-2016 RD1_RS10935 111aac937ea683ec265104b3efc70407 346 Pfam PF13407 Periplasmic binding protein domain 40 294 9.6E-31 T 23-04-2016 IPR025997 Periplasmic binding protein RD1_RS07890 9460b1a21ccab27a03adafc66bb33aef 619 SUPERFAMILY SSF141868 350 594 2.22E-69 T 23-04-2016 IPR001633 EAL domain RD1_RS07890 9460b1a21ccab27a03adafc66bb33aef 619 PANTHER PTHR33121:SF13 323 617 2.0E-57 T 23-04-2016 RD1_RS07890 9460b1a21ccab27a03adafc66bb33aef 619 SMART SM00052 344 587 2.9E-77 T 23-04-2016 IPR001633 EAL domain RD1_RS07890 9460b1a21ccab27a03adafc66bb33aef 619 Gene3D G3DSA:3.30.70.270 175 341 1.6E-52 T 23-04-2016 RD1_RS07890 9460b1a21ccab27a03adafc66bb33aef 619 SUPERFAMILY SSF55785 32 105 9.25E-12 T 23-04-2016 IPR000014 PAS domain RD1_RS07890 9460b1a21ccab27a03adafc66bb33aef 619 SMART SM00267 162 334 1.2E-52 T 23-04-2016 IPR000160 GGDEF domain RD1_RS07890 9460b1a21ccab27a03adafc66bb33aef 619 Pfam PF00990 Diguanylate cyclase, GGDEF domain 173 329 6.1E-45 T 23-04-2016 IPR000160 GGDEF domain RD1_RS07890 9460b1a21ccab27a03adafc66bb33aef 619 SUPERFAMILY SSF55073 178 336 2.82E-46 T 23-04-2016 IPR029787 Nucleotide cyclase RD1_RS07890 9460b1a21ccab27a03adafc66bb33aef 619 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 35 126 1.6E-8 T 23-04-2016 IPR000014 PAS domain RD1_RS07890 9460b1a21ccab27a03adafc66bb33aef 619 Pfam PF00563 EAL domain 351 582 1.9E-66 T 23-04-2016 IPR001633 EAL domain RD1_RS07890 9460b1a21ccab27a03adafc66bb33aef 619 Gene3D G3DSA:3.30.450.20 32 106 8.8E-10 T 23-04-2016 RD1_RS07890 9460b1a21ccab27a03adafc66bb33aef 619 PANTHER PTHR33121 323 617 2.0E-57 T 23-04-2016 RD1_RS07890 9460b1a21ccab27a03adafc66bb33aef 619 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 171 331 9.4E-41 T 23-04-2016 IPR000160 GGDEF domain RD1_RS07890 9460b1a21ccab27a03adafc66bb33aef 619 Gene3D G3DSA:3.20.20.450 348 593 9.3E-73 T 23-04-2016 IPR001633 EAL domain RD1_RS09130 c743252c3612f455ba16cb40081e9e81 603 Gene3D G3DSA:1.20.1560.10 29 338 2.4E-71 T 23-04-2016 RD1_RS09130 c743252c3612f455ba16cb40081e9e81 603 SUPERFAMILY SSF52540 351 596 5.21E-92 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09130 c743252c3612f455ba16cb40081e9e81 603 Gene3D G3DSA:3.40.50.300 358 589 6.8E-87 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09130 c743252c3612f455ba16cb40081e9e81 603 PANTHER PTHR24221 14 603 6.6E-242 T 23-04-2016 RD1_RS09130 c743252c3612f455ba16cb40081e9e81 603 Pfam PF00005 ABC transporter 376 525 5.0E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS09130 c743252c3612f455ba16cb40081e9e81 603 SUPERFAMILY SSF90123 22 344 2.88E-71 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS09130 c743252c3612f455ba16cb40081e9e81 603 Pfam PF00664 ABC transporter transmembrane region 42 306 1.6E-41 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS09130 c743252c3612f455ba16cb40081e9e81 603 SMART SM00382 385 571 1.4E-20 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS09130 c743252c3612f455ba16cb40081e9e81 603 ProSitePatterns PS00211 ABC transporters family signature. 497 511 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS09130 c743252c3612f455ba16cb40081e9e81 603 TIGRFAM TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein 22 596 5.6E-265 T 23-04-2016 IPR011918 ABC transporter, ATP-binding/permease protein RD1_RS14540 1fd198c07a5d56868a7db349ee9c0c21 263 PANTHER PTHR33969 7 258 1.1E-47 T 23-04-2016 RD1_RS14540 1fd198c07a5d56868a7db349ee9c0c21 263 Pfam PF02616 Segregation and condensation protein ScpA 42 123 1.4E-7 T 23-04-2016 IPR003768 Segregation and condensation protein A RD1_RS14540 1fd198c07a5d56868a7db349ee9c0c21 263 PANTHER PTHR33969:SF2 7 258 1.1E-47 T 23-04-2016 RD1_RS13470 5ec1d8c3e25d801a600c0de4f313c955 729 Gene3D G3DSA:3.40.50.970 409 578 7.7E-48 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS13470 5ec1d8c3e25d801a600c0de4f313c955 729 SMART SM00861 394 575 3.3E-44 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RD1_RS13470 5ec1d8c3e25d801a600c0de4f313c955 729 PANTHER PTHR11624:SF21 211 328 3.0E-56 T 23-04-2016 RD1_RS13470 5ec1d8c3e25d801a600c0de4f313c955 729 PANTHER PTHR11624:SF21 374 674 3.0E-56 T 23-04-2016 RD1_RS13470 5ec1d8c3e25d801a600c0de4f313c955 729 SUPERFAMILY SSF52922 596 724 4.97E-24 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RD1_RS13470 5ec1d8c3e25d801a600c0de4f313c955 729 SUPERFAMILY SSF52518 17 354 5.89E-54 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS13470 5ec1d8c3e25d801a600c0de4f313c955 729 PANTHER PTHR11624 211 328 3.0E-56 T 23-04-2016 IPR033247 Transketolase family RD1_RS13470 5ec1d8c3e25d801a600c0de4f313c955 729 PANTHER PTHR11624 374 674 3.0E-56 T 23-04-2016 IPR033247 Transketolase family RD1_RS13470 5ec1d8c3e25d801a600c0de4f313c955 729 Pfam PF02779 Transketolase, pyrimidine binding domain 399 574 1.3E-26 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RD1_RS13470 5ec1d8c3e25d801a600c0de4f313c955 729 Pfam PF02780 Transketolase, C-terminal domain 604 716 2.0E-15 T 23-04-2016 IPR033248 Transketolase, C-terminal domain RD1_RS13470 5ec1d8c3e25d801a600c0de4f313c955 729 SUPERFAMILY SSF52518 395 583 5.35E-49 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS13470 5ec1d8c3e25d801a600c0de4f313c955 729 Pfam PF00676 Dehydrogenase E1 component 41 350 1.6E-25 T 23-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 RD1_RS13470 5ec1d8c3e25d801a600c0de4f313c955 729 Gene3D G3DSA:3.40.50.970 15 408 2.7E-79 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS13470 5ec1d8c3e25d801a600c0de4f313c955 729 Gene3D G3DSA:3.40.50.920 606 722 3.6E-22 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RD1_RS10150 e015c6a1a2e2dcc34f9f2f68f122c72e 325 SUPERFAMILY SSF48179 199 316 1.12E-28 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS10150 e015c6a1a2e2dcc34f9f2f68f122c72e 325 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 197 316 2.5E-27 T 23-04-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RD1_RS10150 e015c6a1a2e2dcc34f9f2f68f122c72e 325 Gene3D G3DSA:3.40.50.720 1 194 1.5E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS10150 e015c6a1a2e2dcc34f9f2f68f122c72e 325 PANTHER PTHR21708 137 319 5.1E-152 T 23-04-2016 RD1_RS10150 e015c6a1a2e2dcc34f9f2f68f122c72e 325 PANTHER PTHR21708 1 121 5.1E-152 T 23-04-2016 RD1_RS10150 e015c6a1a2e2dcc34f9f2f68f122c72e 325 SUPERFAMILY SSF51735 1 150 6.69E-17 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS10150 e015c6a1a2e2dcc34f9f2f68f122c72e 325 PANTHER PTHR21708:SF29 137 319 5.1E-152 T 23-04-2016 RD1_RS10150 e015c6a1a2e2dcc34f9f2f68f122c72e 325 PANTHER PTHR21708:SF29 1 121 5.1E-152 T 23-04-2016 RD1_RS10150 e015c6a1a2e2dcc34f9f2f68f122c72e 325 Gene3D G3DSA:1.10.1040.10 198 317 1.1E-28 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS10150 e015c6a1a2e2dcc34f9f2f68f122c72e 325 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 169 4.3E-27 T 23-04-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RD1_RS02925 222aca6e426a777c8ef47e601cf2c1a5 317 SUPERFAMILY SSF53448 26 295 2.72E-42 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS02925 222aca6e426a777c8ef47e601cf2c1a5 317 PANTHER PTHR22916 29 317 5.5E-33 T 23-04-2016 RD1_RS02925 222aca6e426a777c8ef47e601cf2c1a5 317 Pfam PF00535 Glycosyl transferase family 2 29 133 1.1E-21 T 23-04-2016 IPR001173 Glycosyltransferase 2-like RD1_RS02925 222aca6e426a777c8ef47e601cf2c1a5 317 Gene3D G3DSA:3.90.550.10 27 240 1.3E-35 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS04440 646debb177144504e45ed90a5521e323 328 Gene3D G3DSA:3.40.1190.20 2 317 1.2E-63 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS04440 646debb177144504e45ed90a5521e323 328 SUPERFAMILY SSF53613 1 314 2.34E-74 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS04440 646debb177144504e45ed90a5521e323 328 Pfam PF00294 pfkB family carbohydrate kinase 44 313 6.2E-43 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RD1_RS04440 646debb177144504e45ed90a5521e323 328 PANTHER PTHR10584 1 324 4.9E-78 T 23-04-2016 RD1_RS04440 646debb177144504e45ed90a5521e323 328 PANTHER PTHR10584:SF153 1 324 4.9E-78 T 23-04-2016 RD1_RS09750 36d2f2a44ebdc16790a35504c1cbce09 220 SUPERFAMILY SSF56300 28 133 3.01E-14 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS09750 36d2f2a44ebdc16790a35504c1cbce09 220 TIGRFAM TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated 7 198 3.5E-66 T 23-04-2016 IPR026336 Metallophosphoesterase, DNA ligase-associated RD1_RS09750 36d2f2a44ebdc16790a35504c1cbce09 220 PIRSF PIRSF000887 8 212 1.2E-41 T 23-04-2016 IPR024173 Phosphoesterase, MJ0037 RD1_RS09750 36d2f2a44ebdc16790a35504c1cbce09 220 Pfam PF00149 Calcineurin-like phosphoesterase 28 128 8.8E-7 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RD1_RS09750 36d2f2a44ebdc16790a35504c1cbce09 220 Gene3D G3DSA:3.60.21.10 190 216 5.1E-12 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS09750 36d2f2a44ebdc16790a35504c1cbce09 220 Gene3D G3DSA:3.60.21.10 28 116 5.1E-12 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS09750 36d2f2a44ebdc16790a35504c1cbce09 220 PANTHER PTHR39323:SF1 5 202 5.0E-32 T 23-04-2016 RD1_RS09750 36d2f2a44ebdc16790a35504c1cbce09 220 PANTHER PTHR39323 5 202 5.0E-32 T 23-04-2016 RD1_RS06195 f92748590e41d6bb50a39404ff3b8732 375 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 35 367 2.8E-59 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RD1_RS06195 f92748590e41d6bb50a39404ff3b8732 375 PANTHER PTHR30469:SF15 5 366 2.3E-57 T 23-04-2016 RD1_RS06195 f92748590e41d6bb50a39404ff3b8732 375 PANTHER PTHR30469 5 366 2.3E-57 T 23-04-2016 RD1_RS06195 f92748590e41d6bb50a39404ff3b8732 375 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 272 3.8E-16 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RD1_RS06195 f92748590e41d6bb50a39404ff3b8732 375 SUPERFAMILY SSF111369 51 238 1.22E-18 T 23-04-2016 RD1_RS06195 f92748590e41d6bb50a39404ff3b8732 375 Gene3D G3DSA:2.40.50.100 182 214 2.1E-12 T 23-04-2016 RD1_RS06195 f92748590e41d6bb50a39404ff3b8732 375 Gene3D G3DSA:2.40.50.100 62 93 2.1E-12 T 23-04-2016 RD1_RS06820 9b94e708b983296b79607527d27416ed 505 PANTHER PTHR24096:SF206 25 495 1.3E-195 T 23-04-2016 RD1_RS06820 9b94e708b983296b79607527d27416ed 505 Pfam PF13193 AMP-binding enzyme C-terminal domain 413 488 2.3E-11 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RD1_RS06820 9b94e708b983296b79607527d27416ed 505 ProSitePatterns PS00455 Putative AMP-binding domain signature. 160 171 - T 23-04-2016 IPR020845 AMP-binding, conserved site RD1_RS06820 9b94e708b983296b79607527d27416ed 505 Gene3D G3DSA:2.30.38.10 321 395 2.7E-28 T 23-04-2016 RD1_RS06820 9b94e708b983296b79607527d27416ed 505 SUPERFAMILY SSF56801 27 501 1.44E-137 T 23-04-2016 RD1_RS06820 9b94e708b983296b79607527d27416ed 505 Pfam PF00501 AMP-binding enzyme 25 404 2.8E-96 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RD1_RS06820 9b94e708b983296b79607527d27416ed 505 Gene3D G3DSA:3.30.300.30 399 498 9.8E-27 T 23-04-2016 RD1_RS06820 9b94e708b983296b79607527d27416ed 505 Gene3D G3DSA:3.40.50.980 23 165 2.1E-31 T 23-04-2016 RD1_RS06820 9b94e708b983296b79607527d27416ed 505 PANTHER PTHR24096 25 495 1.3E-195 T 23-04-2016 RD1_RS06820 9b94e708b983296b79607527d27416ed 505 Gene3D G3DSA:3.40.50.980 166 320 6.3E-40 T 23-04-2016 RD1_RS17970 75ce73073bdfbd5f7cc3bbe738194425 409 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 253 363 3.0E-29 T 23-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal RD1_RS17970 75ce73073bdfbd5f7cc3bbe738194425 409 SUPERFAMILY SSF53901 1 252 4.32E-66 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS17970 75ce73073bdfbd5f7cc3bbe738194425 409 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 245 2.8E-44 T 23-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RD1_RS17970 75ce73073bdfbd5f7cc3bbe738194425 409 Gene3D G3DSA:3.40.47.10 2 256 1.8E-59 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS17970 75ce73073bdfbd5f7cc3bbe738194425 409 SUPERFAMILY SSF53901 214 407 1.28E-57 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS17970 75ce73073bdfbd5f7cc3bbe738194425 409 PANTHER PTHR11712 1 407 1.2E-150 T 23-04-2016 RD1_RS17970 75ce73073bdfbd5f7cc3bbe738194425 409 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 153 169 - T 23-04-2016 IPR018201 Beta-ketoacyl synthase, active site RD1_RS17970 75ce73073bdfbd5f7cc3bbe738194425 409 Gene3D G3DSA:3.40.47.10 262 407 1.7E-45 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS17970 75ce73073bdfbd5f7cc3bbe738194425 409 SMART SM00825 Beta-ketoacyl synthase 4 409 9.0E-14 T 23-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 SUPERFAMILY SSF55874 404 575 2.23E-41 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 SMART SM00388 350 415 9.6E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 Gene3D G3DSA:1.10.287.130 342 410 7.8E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 SMART SM00091 212 279 3.0E-8 T 23-04-2016 IPR000014 PAS domain RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 Pfam PF00072 Response regulator receiver domain 601 712 4.4E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 SMART SM00448 598 712 5.9E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 Pfam PF13426 PAS domain 223 328 5.1E-13 T 23-04-2016 IPR000014 PAS domain RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 SMART SM00387 462 575 1.2E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 SUPERFAMILY SSF47384 337 414 8.24E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 PRINTS PR00344 Bacterial sensor protein C-terminal signature 518 528 3.3E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 PRINTS PR00344 Bacterial sensor protein C-terminal signature 535 553 3.3E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 PRINTS PR00344 Bacterial sensor protein C-terminal signature 500 514 3.3E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 PRINTS PR00344 Bacterial sensor protein C-terminal signature 559 572 3.3E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 PANTHER PTHR24423 2 12 2.8E-130 T 23-04-2016 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 PANTHER PTHR24423 190 718 2.8E-130 T 23-04-2016 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 Gene3D G3DSA:3.30.450.20 200 328 6.8E-20 T 23-04-2016 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 SUPERFAMILY SSF55785 223 338 5.23E-23 T 23-04-2016 IPR000014 PAS domain RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 SUPERFAMILY SSF47226 736 809 4.06E-6 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 Gene3D G3DSA:1.20.120.160 708 813 4.8E-7 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 464 574 1.7E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 Gene3D G3DSA:3.30.565.10 420 579 1.4E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 Pfam PF00512 His Kinase A (phospho-acceptor) domain 350 413 1.5E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 Gene3D G3DSA:3.40.50.2300 599 707 7.4E-35 T 23-04-2016 RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 212 336 2.9E-24 T 23-04-2016 IPR000014 PAS domain RD1_RS16455 59f554ad48dceae6f8b05869f48266e9 820 SUPERFAMILY SSF52172 599 718 2.85E-35 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 SUPERFAMILY SSF53720 25 432 4.9E-83 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 Pfam PF00815 Histidinol dehydrogenase 23 428 2.7E-166 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 PRINTS PR00083 Histidinol dehydrogenase signature 252 271 6.4E-83 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 PRINTS PR00083 Histidinol dehydrogenase signature 362 380 6.4E-83 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 PRINTS PR00083 Histidinol dehydrogenase signature 230 251 6.4E-83 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 PRINTS PR00083 Histidinol dehydrogenase signature 34 58 6.4E-83 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 PRINTS PR00083 Histidinol dehydrogenase signature 201 226 6.4E-83 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 PRINTS PR00083 Histidinol dehydrogenase signature 321 346 6.4E-83 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 PRINTS PR00083 Histidinol dehydrogenase signature 137 163 6.4E-83 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 PRINTS PR00083 Histidinol dehydrogenase signature 171 197 6.4E-83 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 PANTHER PTHR21256 5 434 3.7E-198 T 23-04-2016 RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 PIRSF PIRSF000099 4 431 2.2E-156 T 23-04-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 6 428 40.623 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 230 262 - T 23-04-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 34 427 2.9E-157 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS04915 a973db05a72a21cceb017c3a4a70abef 437 Gene3D G3DSA:3.40.50.1980 29 240 5.3E-79 T 23-04-2016 RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 Gene3D G3DSA:3.40.50.261 124 290 3.1E-63 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 292 3.4E-122 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 SMART SM00881 4 100 9.5E-32 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 PANTHER PTHR11117 1 294 5.1E-144 T 23-04-2016 RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 PRINTS PR01798 Succinyl-CoA synthase signature 244 261 4.0E-29 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 PRINTS PR01798 Succinyl-CoA synthase signature 212 225 4.0E-29 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 PRINTS PR01798 Succinyl-CoA synthase signature 181 199 4.0E-29 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 4.0E-29 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 Pfam PF00549 CoA-ligase 157 274 2.2E-13 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 SUPERFAMILY SSF51735 1 126 3.32E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 SUPERFAMILY SSF52210 127 291 7.2E-48 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 Gene3D G3DSA:3.40.50.720 2 123 1.6E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 240 253 - T 23-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 PANTHER PTHR11117:SF2 1 294 5.1E-144 T 23-04-2016 RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 Pfam PF02629 CoA binding domain 7 99 1.2E-25 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RD1_RS19430 a3b503b0f9dfa98f39eb7de69c9d2bf3 297 PIRSF PIRSF001553 1 295 1.6E-118 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS10060 d740f27d5bef340d1659d009d3e18e99 531 PANTHER PTHR11686:SF8 8 531 5.4E-222 T 23-04-2016 RD1_RS10060 d740f27d5bef340d1659d009d3e18e99 531 SUPERFAMILY SSF56235 8 531 2.89E-165 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS10060 d740f27d5bef340d1659d009d3e18e99 531 PANTHER PTHR11686 8 531 5.4E-222 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS10060 d740f27d5bef340d1659d009d3e18e99 531 Pfam PF01019 Gamma-glutamyltranspeptidase 35 526 6.7E-149 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS10060 d740f27d5bef340d1659d009d3e18e99 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 42 67 1.0E-35 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS10060 d740f27d5bef340d1659d009d3e18e99 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 225 241 1.0E-35 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS10060 d740f27d5bef340d1659d009d3e18e99 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 404 419 1.0E-35 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS10060 d740f27d5bef340d1659d009d3e18e99 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 109 127 1.0E-35 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS10060 d740f27d5bef340d1659d009d3e18e99 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 373 391 1.0E-35 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS10060 d740f27d5bef340d1659d009d3e18e99 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 254 273 1.0E-35 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS10060 d740f27d5bef340d1659d009d3e18e99 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 127 146 1.0E-35 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS10060 d740f27d5bef340d1659d009d3e18e99 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 428 445 1.0E-35 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS10060 d740f27d5bef340d1659d009d3e18e99 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 349 367 1.0E-35 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS12495 1a789cddda0721ee123303451524108e 529 Gene3D G3DSA:1.10.1390.10 487 526 2.2E-15 T 23-04-2016 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RD1_RS12495 1a789cddda0721ee123303451524108e 529 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 244 257 - T 23-04-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RD1_RS12495 1a789cddda0721ee123303451524108e 529 Pfam PF00342 Phosphoglucose isomerase 42 521 5.0E-185 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RD1_RS12495 1a789cddda0721ee123303451524108e 529 PANTHER PTHR11469 4 528 2.0E-238 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RD1_RS12495 1a789cddda0721ee123303451524108e 529 Gene3D G3DSA:3.40.50.10490 2 88 1.0E-120 T 23-04-2016 RD1_RS12495 1a789cddda0721ee123303451524108e 529 Gene3D G3DSA:3.40.50.10490 272 486 1.0E-120 T 23-04-2016 RD1_RS12495 1a789cddda0721ee123303451524108e 529 Gene3D G3DSA:3.40.50.10490 89 269 1.5E-67 T 23-04-2016 RD1_RS12495 1a789cddda0721ee123303451524108e 529 PRINTS PR00662 Glucose-6-phosphate isomerase signature 463 477 9.2E-51 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RD1_RS12495 1a789cddda0721ee123303451524108e 529 PRINTS PR00662 Glucose-6-phosphate isomerase signature 240 258 9.2E-51 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RD1_RS12495 1a789cddda0721ee123303451524108e 529 PRINTS PR00662 Glucose-6-phosphate isomerase signature 445 463 9.2E-51 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RD1_RS12495 1a789cddda0721ee123303451524108e 529 PRINTS PR00662 Glucose-6-phosphate isomerase signature 477 490 9.2E-51 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RD1_RS12495 1a789cddda0721ee123303451524108e 529 PRINTS PR00662 Glucose-6-phosphate isomerase signature 317 338 9.2E-51 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RD1_RS12495 1a789cddda0721ee123303451524108e 529 PRINTS PR00662 Glucose-6-phosphate isomerase signature 132 151 9.2E-51 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RD1_RS12495 1a789cddda0721ee123303451524108e 529 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 36 504 38.272 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RD1_RS12495 1a789cddda0721ee123303451524108e 529 SUPERFAMILY SSF53697 3 526 2.18E-192 T 23-04-2016 RD1_RS12495 1a789cddda0721ee123303451524108e 529 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 477 494 - T 23-04-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RD1_RS06335 19030537f36c619e9d0643d740bf507f 173 PANTHER PTHR30328:SF27 11 133 2.8E-17 T 23-04-2016 RD1_RS06335 19030537f36c619e9d0643d740bf507f 173 Gene3D G3DSA:1.10.357.10 4 167 1.5E-17 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RD1_RS06335 19030537f36c619e9d0643d740bf507f 173 PANTHER PTHR30328 11 133 2.8E-17 T 23-04-2016 RD1_RS06335 19030537f36c619e9d0643d740bf507f 173 SUPERFAMILY SSF46689 4 75 6.67E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS06335 19030537f36c619e9d0643d740bf507f 173 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 48 1.8E-4 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS15790 a6bbbb70e053f96668b0875809521791 328 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 113 292 1.2E-55 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RD1_RS15790 a6bbbb70e053f96668b0875809521791 328 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 8 323 3.1E-31 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 RD1_RS15790 a6bbbb70e053f96668b0875809521791 328 SUPERFAMILY SSF51735 106 293 5.65E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15790 a6bbbb70e053f96668b0875809521791 328 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 153 180 - T 23-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RD1_RS15790 a6bbbb70e053f96668b0875809521791 328 Gene3D G3DSA:3.40.50.720 6 117 1.1E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15790 a6bbbb70e053f96668b0875809521791 328 Gene3D G3DSA:3.40.50.720 118 295 4.4E-62 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15790 a6bbbb70e053f96668b0875809521791 328 SUPERFAMILY SSF52283 5 139 7.18E-38 T 23-04-2016 RD1_RS15790 a6bbbb70e053f96668b0875809521791 328 PANTHER PTHR10996 1 323 2.6E-118 T 23-04-2016 RD1_RS12535 fde0ea0921275ca5128bf6ab6bce7923 251 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 13 244 5.2E-50 T 23-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RD1_RS12535 fde0ea0921275ca5128bf6ab6bce7923 251 SUPERFAMILY SSF75217 12 177 1.83E-29 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases RD1_RS12535 fde0ea0921275ca5128bf6ab6bce7923 251 Gene3D G3DSA:3.40.1280.10 13 168 8.6E-26 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RD1_RS12535 fde0ea0921275ca5128bf6ab6bce7923 251 PANTHER PTHR12029 14 166 1.3E-19 T 23-04-2016 RD1_RS12535 fde0ea0921275ca5128bf6ab6bce7923 251 Pfam PF00588 SpoU rRNA Methylase family 13 162 7.2E-24 T 23-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RD1_RS12535 fde0ea0921275ca5128bf6ab6bce7923 251 PIRSF PIRSF004808 7 250 8.2E-76 T 23-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RD1_RS07290 41ed7c548e806fb1549501aaa810a920 353 PANTHER PTHR22916 9 304 6.1E-47 T 23-04-2016 RD1_RS07290 41ed7c548e806fb1549501aaa810a920 353 SUPERFAMILY SSF53448 9 229 3.32E-52 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS07290 41ed7c548e806fb1549501aaa810a920 353 Pfam PF00535 Glycosyl transferase family 2 11 138 1.3E-29 T 23-04-2016 IPR001173 Glycosyltransferase 2-like RD1_RS07290 41ed7c548e806fb1549501aaa810a920 353 Gene3D G3DSA:3.90.550.10 9 229 6.1E-51 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS07110 fb7112b2284f18b9bf59fb209ad74fb2 193 Gene3D G3DSA:3.30.1330.110 4 193 6.4E-77 T 23-04-2016 IPR009569 Amino acid synthesis, putative RD1_RS07110 fb7112b2284f18b9bf59fb209ad74fb2 193 Pfam PF06684 Amino acid synthesis 7 179 7.1E-72 T 23-04-2016 IPR009569 Amino acid synthesis, putative RD1_RS07110 fb7112b2284f18b9bf59fb209ad74fb2 193 SUPERFAMILY SSF160519 5 193 3.27E-70 T 23-04-2016 IPR009569 Amino acid synthesis, putative RD1_RS02530 1dc998998df396ffc73dafa8f69ed4af 573 SUPERFAMILY SSF56801 16 567 7.33E-146 T 23-04-2016 RD1_RS02530 1dc998998df396ffc73dafa8f69ed4af 573 Gene3D G3DSA:3.40.50.980 231 393 4.2E-41 T 23-04-2016 RD1_RS02530 1dc998998df396ffc73dafa8f69ed4af 573 Gene3D G3DSA:2.30.38.10 394 464 4.7E-27 T 23-04-2016 RD1_RS02530 1dc998998df396ffc73dafa8f69ed4af 573 ProSitePatterns PS00455 Putative AMP-binding domain signature. 226 237 - T 23-04-2016 IPR020845 AMP-binding, conserved site RD1_RS02530 1dc998998df396ffc73dafa8f69ed4af 573 Pfam PF13193 AMP-binding enzyme C-terminal domain 482 556 3.6E-22 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RD1_RS02530 1dc998998df396ffc73dafa8f69ed4af 573 PANTHER PTHR24096 186 567 2.1E-160 T 23-04-2016 RD1_RS02530 1dc998998df396ffc73dafa8f69ed4af 573 PANTHER PTHR24096 10 169 2.1E-160 T 23-04-2016 RD1_RS02530 1dc998998df396ffc73dafa8f69ed4af 573 Gene3D G3DSA:3.40.50.980 26 160 1.7E-33 T 23-04-2016 RD1_RS02530 1dc998998df396ffc73dafa8f69ed4af 573 Gene3D G3DSA:3.40.50.980 200 230 1.7E-33 T 23-04-2016 RD1_RS02530 1dc998998df396ffc73dafa8f69ed4af 573 Pfam PF00501 AMP-binding enzyme 35 473 3.2E-104 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RD1_RS02530 1dc998998df396ffc73dafa8f69ed4af 573 Gene3D G3DSA:3.30.300.30 470 569 1.6E-33 T 23-04-2016 RD1_RS18125 6bf14ee6c1f1793a6685bf31e2f60bcd 350 SUPERFAMILY SSF51395 13 341 1.59E-96 T 23-04-2016 RD1_RS18125 6bf14ee6c1f1793a6685bf31e2f60bcd 350 PIRSF PIRSF000164 13 344 1.8E-93 T 23-04-2016 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Reactome: REACT_1698 RD1_RS18125 6bf14ee6c1f1793a6685bf31e2f60bcd 350 Pfam PF01180 Dihydroorotate dehydrogenase 45 327 8.6E-81 T 23-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 RD1_RS18125 6bf14ee6c1f1793a6685bf31e2f60bcd 350 PANTHER PTHR11938 12 342 1.2E-84 T 23-04-2016 RD1_RS18125 6bf14ee6c1f1793a6685bf31e2f60bcd 350 PANTHER PTHR11938:SF47 12 342 1.2E-84 T 23-04-2016 RD1_RS18125 6bf14ee6c1f1793a6685bf31e2f60bcd 350 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 23-04-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 RD1_RS18125 6bf14ee6c1f1793a6685bf31e2f60bcd 350 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 13 343 1.6E-105 T 23-04-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS18125 6bf14ee6c1f1793a6685bf31e2f60bcd 350 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 279 299 - T 23-04-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 RD1_RS18125 6bf14ee6c1f1793a6685bf31e2f60bcd 350 Gene3D G3DSA:3.20.20.70 5 342 4.1E-118 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS05630 37ad68868062b392fe626713394bbce1 196 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 7 104 5.9E-5 T 23-04-2016 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like RD1_RS05630 37ad68868062b392fe626713394bbce1 196 SUPERFAMILY SSF110857 4 88 2.35E-7 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like RD1_RS05630 37ad68868062b392fe626713394bbce1 196 Gene3D G3DSA:3.10.490.10 4 127 4.5E-9 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like RD1_RS03595 c67e83018d0ab91db17c76d4e5df9322 293 SMART SM00849 22 212 1.2E-19 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS03595 c67e83018d0ab91db17c76d4e5df9322 293 PANTHER PTHR11935 1 277 1.3E-105 T 23-04-2016 RD1_RS03595 c67e83018d0ab91db17c76d4e5df9322 293 Gene3D G3DSA:3.60.15.10 10 254 4.0E-49 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS03595 c67e83018d0ab91db17c76d4e5df9322 293 SUPERFAMILY SSF56281 21 258 2.44E-47 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS03595 c67e83018d0ab91db17c76d4e5df9322 293 PANTHER PTHR11935:SF110 1 277 1.3E-105 T 23-04-2016 RD1_RS03595 c67e83018d0ab91db17c76d4e5df9322 293 Pfam PF00753 Metallo-beta-lactamase superfamily 22 212 9.7E-22 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS19210 345d209628f40f7d2cf9abd449b28e66 106 Pfam PF02472 Biopolymer transport protein ExbD/TolR 1 74 6.4E-9 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 PRINTS PR00145 Argininosuccinate lyase family signature 264 280 4.2E-5 T 23-04-2016 RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 PRINTS PR00145 Argininosuccinate lyase family signature 131 151 4.2E-5 T 23-04-2016 RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 PRINTS PR00145 Argininosuccinate lyase family signature 219 243 4.2E-5 T 23-04-2016 RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 Gene3D G3DSA:1.10.275.10 2 93 5.8E-31 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 ProSitePatterns PS00163 Fumarate lyases signature. 264 273 - T 23-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 SUPERFAMILY SSF48557 3 432 1.73E-130 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 PRINTS PR00149 Fumarate lyase superfamily signature 136 154 1.8E-24 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 PRINTS PR00149 Fumarate lyase superfamily signature 91 109 1.8E-24 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 PRINTS PR00149 Fumarate lyase superfamily signature 264 280 1.8E-24 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 PRINTS PR00149 Fumarate lyase superfamily signature 219 246 1.8E-24 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 PANTHER PTHR11444:SF2 4 427 2.1E-143 T 23-04-2016 RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 SMART SM00998 352 432 2.0E-41 T 23-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 Gene3D G3DSA:1.10.40.30 360 432 1.4E-36 T 23-04-2016 RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 Gene3D G3DSA:1.20.200.10 94 359 2.9E-87 T 23-04-2016 RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 Pfam PF00206 Lyase 8 287 6.6E-52 T 23-04-2016 IPR022761 Fumarate lyase, N-terminal RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 432 3.0E-153 T 23-04-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 PANTHER PTHR11444 4 427 2.1E-143 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS11795 987ed95dc187d5029f18280c00c25a30 434 Pfam PF10397 Adenylosuccinate lyase C-terminus 353 431 1.6E-26 T 23-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 RD1_RS05515 5592e974450a16064ba274f33cf9fa85 173 SUPERFAMILY SSF52540 6 169 1.42E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05515 5592e974450a16064ba274f33cf9fa85 173 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 7 167 5.7E-53 T 23-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 RD1_RS05515 5592e974450a16064ba274f33cf9fa85 173 Gene3D G3DSA:3.40.50.300 6 169 4.7E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05515 5592e974450a16064ba274f33cf9fa85 173 PIRSF PIRSF006135 4 171 2.2E-47 T 23-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 RD1_RS05515 5592e974450a16064ba274f33cf9fa85 173 PANTHER PTHR34848 1 171 1.1E-53 T 23-04-2016 RD1_RS07080 7234dd7055e07a2874f9bb781c22b852 393 Gene3D G3DSA:3.20.20.140 275 342 6.2E-7 T 23-04-2016 RD1_RS07080 7234dd7055e07a2874f9bb781c22b852 393 SUPERFAMILY SSF51338 327 381 2.55E-11 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS07080 7234dd7055e07a2874f9bb781c22b852 393 SUPERFAMILY SSF51338 8 66 2.55E-11 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS07080 7234dd7055e07a2874f9bb781c22b852 393 Gene3D G3DSA:2.30.40.10 4 108 3.5E-14 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS07080 7234dd7055e07a2874f9bb781c22b852 393 SUPERFAMILY SSF51556 64 321 3.36E-17 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS07080 7234dd7055e07a2874f9bb781c22b852 393 Pfam PF01979 Amidohydrolase family 63 370 5.8E-12 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RD1_RS08975 d60c91bfbd36fd3ff90ef6519929b922 496 PIRSF PIRSF006247 13 496 6.4E-176 T 23-04-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 RD1_RS08975 d60c91bfbd36fd3ff90ef6519929b922 496 Pfam PF02386 Cation transport protein 52 485 3.2E-48 T 23-04-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 RD1_RS08975 d60c91bfbd36fd3ff90ef6519929b922 496 PANTHER PTHR32024:SF3 15 496 1.5E-162 T 23-04-2016 RD1_RS08975 d60c91bfbd36fd3ff90ef6519929b922 496 PANTHER PTHR32024 15 496 1.5E-162 T 23-04-2016 RD1_RS10135 b416c867e8cdd143887b5a0ab003494d 313 PANTHER PTHR30346:SF15 2 311 7.8E-102 T 23-04-2016 RD1_RS10135 b416c867e8cdd143887b5a0ab003494d 313 Pfam PF03466 LysR substrate binding domain 90 282 2.0E-47 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS10135 b416c867e8cdd143887b5a0ab003494d 313 SUPERFAMILY SSF46785 4 113 8.17E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS10135 b416c867e8cdd143887b5a0ab003494d 313 SUPERFAMILY SSF53850 91 293 6.88E-42 T 23-04-2016 RD1_RS10135 b416c867e8cdd143887b5a0ab003494d 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.7E-20 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS10135 b416c867e8cdd143887b5a0ab003494d 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 3.3E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS10135 b416c867e8cdd143887b5a0ab003494d 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 3.3E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS10135 b416c867e8cdd143887b5a0ab003494d 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 3.3E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS10135 b416c867e8cdd143887b5a0ab003494d 313 Gene3D G3DSA:3.40.190.10 91 191 2.7E-28 T 23-04-2016 RD1_RS10135 b416c867e8cdd143887b5a0ab003494d 313 PANTHER PTHR30346 2 311 7.8E-102 T 23-04-2016 RD1_RS10135 b416c867e8cdd143887b5a0ab003494d 313 Gene3D G3DSA:3.40.190.10 192 268 3.9E-24 T 23-04-2016 RD1_RS10135 b416c867e8cdd143887b5a0ab003494d 313 Gene3D G3DSA:1.10.10.10 5 89 6.0E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07840 03a5c8306ef6e2610e260cedded3e55b 554 Pfam PF04055 Radical SAM superfamily 201 362 6.3E-19 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RD1_RS07840 03a5c8306ef6e2610e260cedded3e55b 554 TIGRFAM TIGR02026 BchE: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 2 501 3.6E-249 T 23-04-2016 IPR011772 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase GO:0015995|GO:0016709|GO:0050661|GO:0055114 KEGG: 00130+1.14.13.-|KEGG: 00140+1.14.13.-|KEGG: 00232+1.14.13.-|KEGG: 00261+1.14.13.-|KEGG: 00340+1.14.13.-|KEGG: 00360+1.14.13.-|KEGG: 00361+1.14.13.-|KEGG: 00362+1.14.13.-|KEGG: 00363+1.14.13.-|KEGG: 00380+1.14.13.-|KEGG: 00403+1.14.13.-|KEGG: 00590+1.14.13.-|KEGG: 00591+1.14.13.-|KEGG: 00622+1.14.13.-|KEGG: 00623+1.14.13.-|KEGG: 00624+1.14.13.-|KEGG: 00625+1.14.13.-|KEGG: 00626+1.14.13.-|KEGG: 00627+1.14.13.-|KEGG: 00640+1.14.13.-|KEGG: 00643+1.14.13.-|KEGG: 00830+1.14.13.-|KEGG: 00903+1.14.13.-|KEGG: 00904+1.14.13.-|KEGG: 00905+1.14.13.-|KEGG: 00906+1.14.13.-|KEGG: 00930+1.14.13.-|KEGG: 00940+1.14.13.-|KEGG: 00941+1.14.13.-|KEGG: 00943+1.14.13.-|KEGG: 00945+1.14.13.-|KEGG: 00950+1.14.13.-|KEGG: 00966+1.14.13.-|KEGG: 00980+1.14.13.-|KEGG: 00982+1.14.13.-|KEGG: 00983+1.14.13.- RD1_RS07840 03a5c8306ef6e2610e260cedded3e55b 554 Pfam PF02310 B12 binding domain 14 132 6.0E-22 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS07840 03a5c8306ef6e2610e260cedded3e55b 554 Gene3D G3DSA:3.80.30.20 200 394 6.9E-43 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RD1_RS07840 03a5c8306ef6e2610e260cedded3e55b 554 SUPERFAMILY SSF102114 193 396 2.22E-42 T 23-04-2016 RD1_RS07840 03a5c8306ef6e2610e260cedded3e55b 554 PANTHER PTHR11918 16 526 1.1E-154 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RD1_RS07840 03a5c8306ef6e2610e260cedded3e55b 554 SMART SM00729 194 407 1.3E-32 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RD1_RS07840 03a5c8306ef6e2610e260cedded3e55b 554 PANTHER PTHR11918:SF70 16 526 1.1E-154 T 23-04-2016 RD1_RS19450 0a4aa8964e1e2496ed90ba725dd356cb 451 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 234 249 - T 23-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS19450 0a4aa8964e1e2496ed90ba725dd356cb 451 SUPERFAMILY SSF55931 108 450 7.52E-98 T 23-04-2016 RD1_RS19450 0a4aa8964e1e2496ed90ba725dd356cb 451 Gene3D G3DSA:3.10.20.70 16 94 7.1E-11 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS19450 0a4aa8964e1e2496ed90ba725dd356cb 451 Pfam PF00120 Glutamine synthetase, catalytic domain 107 446 4.1E-98 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS19450 0a4aa8964e1e2496ed90ba725dd356cb 451 TIGRFAM TIGR03105 gln_synth_III: glutamine synthetase, type III 19 450 8.3E-179 T 23-04-2016 IPR017536 Glutamine synthetase, type III GO:0004356|GO:0006542 RD1_RS19450 0a4aa8964e1e2496ed90ba725dd356cb 451 SUPERFAMILY SSF54368 13 98 1.27E-17 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS19450 0a4aa8964e1e2496ed90ba725dd356cb 451 PANTHER PTHR20852:SF7 19 451 2.7E-127 T 23-04-2016 RD1_RS19450 0a4aa8964e1e2496ed90ba725dd356cb 451 PANTHER PTHR20852 19 451 2.7E-127 T 23-04-2016 RD1_RS19450 0a4aa8964e1e2496ed90ba725dd356cb 451 SMART SM01230 106 365 3.6E-103 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS19450 0a4aa8964e1e2496ed90ba725dd356cb 451 Gene3D G3DSA:3.30.590.10 109 439 1.7E-99 T 23-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 TIGRFAM TIGR04486 thiosulf_SoxB: thiosulfohydrolase SoxB 3 566 4.2E-249 T 23-04-2016 IPR030998 Thiosulfohydrolase SoxB RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 2 22 9.2E-4 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 PRINTS PR01607 Apyrase family signature 47 65 5.8E-13 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 PRINTS PR01607 Apyrase family signature 271 288 5.8E-13 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 PRINTS PR01607 Apyrase family signature 318 338 5.8E-13 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 PRINTS PR01607 Apyrase family signature 516 535 5.8E-13 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 PRINTS PR01607 Apyrase family signature 290 313 5.8E-13 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 PANTHER PTHR11575 25 538 7.1E-138 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 PANTHER PTHR11575:SF16 25 538 7.1E-138 T 23-04-2016 RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 Gene3D G3DSA:3.90.780.10 401 565 9.3E-16 T 23-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 Gene3D G3DSA:3.60.21.10 120 379 6.1E-79 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 Gene3D G3DSA:3.60.21.10 46 66 6.1E-79 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 Pfam PF02872 5'-nucleotidase, C-terminal domain 402 529 1.3E-15 T 23-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 SUPERFAMILY SSF56300 43 66 1.67E-79 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 SUPERFAMILY SSF56300 120 379 1.67E-79 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS07015 83c47b5354868fdeffdb795c6192b0e5 567 SUPERFAMILY SSF55816 378 566 1.02E-31 T 23-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RD1_RS02610 82848615b1341da73fa0ca6c9b7cfd66 200 PANTHER PTHR11260:SF256 1 200 4.4E-31 T 23-04-2016 RD1_RS02610 82848615b1341da73fa0ca6c9b7cfd66 200 SUPERFAMILY SSF52833 1 86 6.87E-15 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS02610 82848615b1341da73fa0ca6c9b7cfd66 200 SUPERFAMILY SSF47616 73 199 6.55E-12 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS02610 82848615b1341da73fa0ca6c9b7cfd66 200 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 80 9.7E-15 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RD1_RS02610 82848615b1341da73fa0ca6c9b7cfd66 200 Gene3D G3DSA:3.40.30.10 1 86 7.0E-16 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS02610 82848615b1341da73fa0ca6c9b7cfd66 200 Gene3D G3DSA:1.20.1050.10 90 199 2.1E-6 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS02610 82848615b1341da73fa0ca6c9b7cfd66 200 PANTHER PTHR11260 1 200 4.4E-31 T 23-04-2016 RD1_RS03840 7c175e8e894cb0dada8459094f8dcb7e 338 PIRSF PIRSF006470 1 330 6.2E-79 T 23-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 RD1_RS03840 7c175e8e894cb0dada8459094f8dcb7e 338 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 48 284 6.9E-56 T 23-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 RD1_RS03840 7c175e8e894cb0dada8459094f8dcb7e 338 PANTHER PTHR33376:SF2 1 336 5.0E-73 T 23-04-2016 RD1_RS03840 7c175e8e894cb0dada8459094f8dcb7e 338 PANTHER PTHR33376 1 336 5.0E-73 T 23-04-2016 RD1_RS03840 7c175e8e894cb0dada8459094f8dcb7e 338 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 45 315 3.9E-71 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS16720 421316e106f1d797f9dce7be16d87dc6 522 PIRSF PIRSF000538 6 513 9.7E-73 T 23-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RD1_RS16720 421316e106f1d797f9dce7be16d87dc6 522 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 375 395 - T 23-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RD1_RS16720 421316e106f1d797f9dce7be16d87dc6 522 PANTHER PTHR10196:SF67 1 518 4.7E-64 T 23-04-2016 RD1_RS16720 421316e106f1d797f9dce7be16d87dc6 522 SUPERFAMILY SSF53067 264 501 4.63E-36 T 23-04-2016 RD1_RS16720 421316e106f1d797f9dce7be16d87dc6 522 PANTHER PTHR10196 1 518 4.7E-64 T 23-04-2016 RD1_RS16720 421316e106f1d797f9dce7be16d87dc6 522 Gene3D G3DSA:3.30.420.40 6 253 4.7E-38 T 23-04-2016 RD1_RS16720 421316e106f1d797f9dce7be16d87dc6 522 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 9 252 1.4E-33 T 23-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RD1_RS16720 421316e106f1d797f9dce7be16d87dc6 522 SUPERFAMILY SSF53067 9 254 6.48E-44 T 23-04-2016 RD1_RS16720 421316e106f1d797f9dce7be16d87dc6 522 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 288 459 3.5E-21 T 23-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RD1_RS16720 421316e106f1d797f9dce7be16d87dc6 522 Gene3D G3DSA:3.30.420.40 308 501 1.2E-28 T 23-04-2016 RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 SUPERFAMILY SSF49899 704 865 2.55E-26 T 23-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 715 863 1.1E-17 T 23-04-2016 RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 390 552 1.7E-21 T 23-04-2016 RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 Gene3D G3DSA:2.150.10.10 567 606 9.7E-21 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 Gene3D G3DSA:2.150.10.10 871 986 9.7E-21 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 Gene3D G3DSA:2.150.10.10 651 659 9.7E-21 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 876 894 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 903 921 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 885 903 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 879 896 0.026 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 898 914 0.0013 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 916 932 0.031 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 569 584 0.13 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 321 331 15.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 586 603 0.0033 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 SUPERFAMILY SSF51120 793 829 5.23E-19 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 SUPERFAMILY SSF51120 869 977 5.23E-19 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 SUPERFAMILY SSF49899 338 554 2.11E-33 T 23-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 PRINTS PR00313 NodO calcium binding signature 898 907 6.6E-10 T 23-04-2016 RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 PRINTS PR00313 NodO calcium binding signature 596 604 6.6E-10 T 23-04-2016 RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 PRINTS PR00313 NodO calcium binding signature 566 577 6.6E-10 T 23-04-2016 RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 PRINTS PR00313 NodO calcium binding signature 889 897 6.6E-10 T 23-04-2016 RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 889 910 1.1E-6 T 23-04-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 432 450 1.1E-6 T 23-04-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 Gene3D G3DSA:2.60.120.200 383 556 1.3E-30 T 23-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 Gene3D G3DSA:2.60.120.200 660 673 1.5E-24 T 23-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain RD1_RS02735 ee96fcfbaff1d864467ccad8c94080e8 1021 Gene3D G3DSA:2.60.120.200 713 867 1.5E-24 T 23-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain RD1_RS03705 dfc9d0c70545ec06ad3d98a83b897807 694 SMART SM00490 544 625 2.3E-9 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS03705 dfc9d0c70545ec06ad3d98a83b897807 694 Gene3D G3DSA:3.40.50.300 499 634 8.2E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03705 dfc9d0c70545ec06ad3d98a83b897807 694 PANTHER PTHR11274 496 637 9.4E-37 T 23-04-2016 RD1_RS03705 dfc9d0c70545ec06ad3d98a83b897807 694 PANTHER PTHR11274 250 473 9.4E-37 T 23-04-2016 RD1_RS03705 dfc9d0c70545ec06ad3d98a83b897807 694 TIGRFAM TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme 241 691 5.9E-196 T 23-04-2016 IPR024012 DNA phosphorothioation system restriction enzyme, putative RD1_RS03705 dfc9d0c70545ec06ad3d98a83b897807 694 SUPERFAMILY SSF52540 302 459 4.35E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03705 dfc9d0c70545ec06ad3d98a83b897807 694 SUPERFAMILY SSF52540 510 645 4.35E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03705 dfc9d0c70545ec06ad3d98a83b897807 694 Gene3D G3DSA:3.40.50.300 249 433 2.5E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03705 dfc9d0c70545ec06ad3d98a83b897807 694 SMART SM00487 247 454 8.5E-15 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD1_RS03705 dfc9d0c70545ec06ad3d98a83b897807 694 Pfam PF04851 Type III restriction enzyme, res subunit 250 416 4.1E-18 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RD1_RS03705 dfc9d0c70545ec06ad3d98a83b897807 694 Pfam PF00271 Helicase conserved C-terminal domain 510 623 1.5E-11 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS12885 a6aac44b5fcf235d764035858f9890c8 272 PANTHER PTHR21367:SF0 19 239 2.7E-65 T 23-04-2016 RD1_RS12885 a6aac44b5fcf235d764035858f9890c8 272 SUPERFAMILY SSF55729 80 241 7.25E-33 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS12885 a6aac44b5fcf235d764035858f9890c8 272 PIRSF PIRSF037208 1 249 6.1E-93 T 23-04-2016 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic RD1_RS12885 a6aac44b5fcf235d764035858f9890c8 272 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 107 229 4.5E-36 T 23-04-2016 IPR007472 Arginine-tRNA-protein transferase, C-terminal GO:0004057|GO:0016598 RD1_RS12885 a6aac44b5fcf235d764035858f9890c8 272 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 18 87 1.4E-17 T 23-04-2016 IPR007471 Arginine-tRNA-protein transferase, N-terminal GO:0004057|GO:0016598 RD1_RS12885 a6aac44b5fcf235d764035858f9890c8 272 Hamap MF_00689 Putative arginyl-tRNA--protein transferase [ate]. 1 239 43.259 T 23-04-2016 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic RD1_RS12885 a6aac44b5fcf235d764035858f9890c8 272 PANTHER PTHR21367 19 239 2.7E-65 T 23-04-2016 IPR030700 Arginine-tRNA-protein transferase RD1_RS09705 f57cde56dfb28a9806003fbd464e0994 443 SUPERFAMILY SSF52964 35 169 6.67E-38 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RD1_RS09705 f57cde56dfb28a9806003fbd464e0994 443 PANTHER PTHR36842 11 441 1.4E-49 T 23-04-2016 RD1_RS09705 f57cde56dfb28a9806003fbd464e0994 443 SUPERFAMILY SSF69304 164 440 1.06E-59 T 23-04-2016 RD1_RS09705 f57cde56dfb28a9806003fbd464e0994 443 Pfam PF04052 TolB amino-terminal domain 30 136 3.2E-31 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RD1_RS09705 f57cde56dfb28a9806003fbd464e0994 443 Hamap MF_00671 Protein TolB [tolB]. 8 438 31.478 T 23-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 RD1_RS09705 f57cde56dfb28a9806003fbd464e0994 443 Gene3D G3DSA:3.40.50.10070 30 159 5.9E-44 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RD1_RS09705 f57cde56dfb28a9806003fbd464e0994 443 Gene3D G3DSA:2.130.10.10 160 440 5.6E-80 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RD1_RS09705 f57cde56dfb28a9806003fbd464e0994 443 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 24 439 2.6E-134 T 23-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 RD1_RS09705 f57cde56dfb28a9806003fbd464e0994 443 Pfam PF07676 WD40-like Beta Propeller Repeat 291 326 6.2E-11 T 23-04-2016 IPR011659 WD40-like Beta Propeller RD1_RS09705 f57cde56dfb28a9806003fbd464e0994 443 Pfam PF07676 WD40-like Beta Propeller Repeat 378 407 7.5E-6 T 23-04-2016 IPR011659 WD40-like Beta Propeller RD1_RS09705 f57cde56dfb28a9806003fbd464e0994 443 Pfam PF07676 WD40-like Beta Propeller Repeat 205 237 4.5E-8 T 23-04-2016 IPR011659 WD40-like Beta Propeller RD1_RS09705 f57cde56dfb28a9806003fbd464e0994 443 Pfam PF07676 WD40-like Beta Propeller Repeat 255 282 1.1E-7 T 23-04-2016 IPR011659 WD40-like Beta Propeller RD1_RS09705 f57cde56dfb28a9806003fbd464e0994 443 Pfam PF07676 WD40-like Beta Propeller Repeat 335 368 4.3E-4 T 23-04-2016 IPR011659 WD40-like Beta Propeller RD1_RS05500 3826b03b582146c9a40f875edb4a7c11 499 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 314 327 1.9E-6 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 RD1_RS05500 3826b03b582146c9a40f875edb4a7c11 499 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 338 350 1.9E-6 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 RD1_RS05500 3826b03b582146c9a40f875edb4a7c11 499 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 206 221 1.9E-6 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 RD1_RS05500 3826b03b582146c9a40f875edb4a7c11 499 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 286 300 1.9E-6 T 23-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 RD1_RS05500 3826b03b582146c9a40f875edb4a7c11 499 Pfam PF13541 Subunit ChlI of Mg-chelatase 19 136 9.7E-38 T 23-04-2016 RD1_RS05500 3826b03b582146c9a40f875edb4a7c11 499 PANTHER PTHR32039:SF7 1 496 2.0E-213 T 23-04-2016 IPR004482 Mg chelatase-related protein RD1_RS05500 3826b03b582146c9a40f875edb4a7c11 499 Pfam PF01078 Magnesium chelatase, subunit ChlI 188 392 8.6E-94 T 23-04-2016 IPR000523 Magnesium chelatase ChlI domain RD1_RS05500 3826b03b582146c9a40f875edb4a7c11 499 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 400 496 9.3E-30 T 23-04-2016 IPR025158 Mg chelatase-related protein, C-terminal domain RD1_RS05500 3826b03b582146c9a40f875edb4a7c11 499 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 5 496 3.3E-161 T 23-04-2016 IPR004482 Mg chelatase-related protein RD1_RS05500 3826b03b582146c9a40f875edb4a7c11 499 Gene3D G3DSA:3.30.230.10 4 166 4.0E-28 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD1_RS05500 3826b03b582146c9a40f875edb4a7c11 499 PANTHER PTHR32039 1 496 2.0E-213 T 23-04-2016 RD1_RS05500 3826b03b582146c9a40f875edb4a7c11 499 SUPERFAMILY SSF52540 188 496 2.92E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05500 3826b03b582146c9a40f875edb4a7c11 499 SUPERFAMILY SSF54211 5 168 8.34E-31 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS05500 3826b03b582146c9a40f875edb4a7c11 499 Gene3D G3DSA:3.40.50.300 187 385 1.3E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05500 3826b03b582146c9a40f875edb4a7c11 499 SMART SM00382 207 389 2.3E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS15150 4e6ad3f7f48ad49829d5b62663ba181e 534 SUPERFAMILY SSF52096 30 267 4.02E-66 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS15150 4e6ad3f7f48ad49829d5b62663ba181e 534 PANTHER PTHR22855:SF35 11 534 0.0 T 23-04-2016 RD1_RS15150 4e6ad3f7f48ad49829d5b62663ba181e 534 Gene3D G3DSA:3.90.226.10 278 529 5.8E-90 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS15150 4e6ad3f7f48ad49829d5b62663ba181e 534 Gene3D G3DSA:3.90.226.10 33 269 1.8E-77 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS15150 4e6ad3f7f48ad49829d5b62663ba181e 534 SUPERFAMILY SSF52096 236 516 3.37E-84 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS15150 4e6ad3f7f48ad49829d5b62663ba181e 534 Pfam PF01039 Carboxyl transferase domain 47 524 1.2E-145 T 23-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RD1_RS15150 4e6ad3f7f48ad49829d5b62663ba181e 534 PANTHER PTHR22855 11 534 0.0 T 23-04-2016 RD1_RS03040 59c35d825fc0cc8cfbc361396dbfbf77 780 SUPERFAMILY SSF53720 506 747 5.63E-45 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS03040 59c35d825fc0cc8cfbc361396dbfbf77 780 SUPERFAMILY SSF53720 32 483 2.62E-151 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS03040 59c35d825fc0cc8cfbc361396dbfbf77 780 Gene3D G3DSA:3.40.309.10 277 459 1.1E-60 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RD1_RS03040 59c35d825fc0cc8cfbc361396dbfbf77 780 Pfam PF00171 Aldehyde dehydrogenase family 532 749 2.1E-38 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RD1_RS03040 59c35d825fc0cc8cfbc361396dbfbf77 780 Pfam PF00171 Aldehyde dehydrogenase family 46 483 3.8E-151 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RD1_RS03040 59c35d825fc0cc8cfbc361396dbfbf77 780 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 262 269 - T 23-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 RD1_RS03040 59c35d825fc0cc8cfbc361396dbfbf77 780 Gene3D G3DSA:3.40.605.10 506 748 1.3E-48 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RD1_RS03040 59c35d825fc0cc8cfbc361396dbfbf77 780 PANTHER PTHR11699:SF98 13 513 5.1E-250 T 23-04-2016 RD1_RS03040 59c35d825fc0cc8cfbc361396dbfbf77 780 PIRSF PIRSF036490 1 780 0.0 T 23-04-2016 IPR011408 Aldehyde dehydrogenase RD1_RS03040 59c35d825fc0cc8cfbc361396dbfbf77 780 Gene3D G3DSA:3.40.605.10 33 276 3.2E-90 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RD1_RS03040 59c35d825fc0cc8cfbc361396dbfbf77 780 PANTHER PTHR11699 13 513 5.1E-250 T 23-04-2016 RD1_RS17195 347b481429bb7f32014f5a2ebd59dfa8 201 PANTHER PTHR24567 2 190 2.3E-19 T 23-04-2016 RD1_RS17195 347b481429bb7f32014f5a2ebd59dfa8 201 SUPERFAMILY SSF46785 127 190 5.77E-7 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS17195 347b481429bb7f32014f5a2ebd59dfa8 201 Gene3D G3DSA:2.60.120.10 2 132 1.1E-11 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS17195 347b481429bb7f32014f5a2ebd59dfa8 201 Gene3D G3DSA:1.10.10.10 133 191 3.9E-7 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS17195 347b481429bb7f32014f5a2ebd59dfa8 201 SUPERFAMILY SSF51206 4 115 7.2E-15 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RD1_RS17195 347b481429bb7f32014f5a2ebd59dfa8 201 Pfam PF00027 Cyclic nucleotide-binding domain 14 99 5.9E-8 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 SMART SM00490 819 903 1.9E-18 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 SUPERFAMILY SSF141259 467 533 9.94E-19 T 23-04-2016 IPR003711 CarD-like/TRCF domain RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 SUPERFAMILY SSF52540 533 777 2.21E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 SMART SM01058 475 569 4.4E-39 T 23-04-2016 IPR003711 CarD-like/TRCF domain RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 Pfam PF03461 TRCF domain 1003 1095 3.6E-26 T 23-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 138 1075 0.0 T 23-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 Pfam PF00270 DEAD/DEAH box helicase 599 757 7.0E-16 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 SUPERFAMILY SSF52540 348 466 2.6E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 SUPERFAMILY SSF52540 4 346 1.2E-89 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 SUPERFAMILY SSF143517 994 1140 3.66E-38 T 23-04-2016 RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 Gene3D G3DSA:3.30.2060.10 125 200 8.5E-10 T 23-04-2016 RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 26 1097 28.01 T 23-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 SMART SM00487 593 783 1.2E-32 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 SUPERFAMILY SSF52540 775 983 9.4E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 Gene3D G3DSA:3.40.50.300 582 779 6.8E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 Pfam PF00271 Helicase conserved C-terminal domain 798 902 2.1E-16 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 SMART SM00982 1002 1102 1.3E-44 T 23-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 Gene3D G3DSA:3.40.50.300 780 956 1.1E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 Pfam PF02559 CarD-like/TRCF domain 476 566 3.5E-23 T 23-04-2016 IPR003711 CarD-like/TRCF domain RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 PANTHER PTHR14025:SF21 386 1129 0.0 T 23-04-2016 RD1_RS12605 53b683f1a170dc27bd988a615b887d2e 1154 PANTHER PTHR14025 386 1129 0.0 T 23-04-2016 RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 SUPERFAMILY SSF52172 639 754 1.42E-26 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 Gene3D G3DSA:1.10.287.130 379 436 1.4E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 SUPERFAMILY SSF55874 440 612 1.44E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 PANTHER PTHR24423:SF379 258 754 4.8E-136 T 23-04-2016 RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 492 612 1.7E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 Gene3D G3DSA:3.30.450.20 265 367 1.5E-5 T 23-04-2016 RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 SMART SM00387 491 614 1.4E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 Pfam PF00512 His Kinase A (phospho-acceptor) domain 386 448 8.4E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 SMART SM00388 384 450 6.6E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 Pfam PF00072 Response regulator receiver domain 639 750 2.1E-18 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 PRINTS PR00344 Bacterial sensor protein C-terminal signature 574 592 1.1E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 PRINTS PR00344 Bacterial sensor protein C-terminal signature 561 571 1.1E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 PRINTS PR00344 Bacterial sensor protein C-terminal signature 598 611 1.1E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 PRINTS PR00344 Bacterial sensor protein C-terminal signature 543 557 1.1E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 SUPERFAMILY SSF47384 379 447 1.59E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 PANTHER PTHR24423 258 754 4.8E-136 T 23-04-2016 RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 Gene3D G3DSA:3.30.565.10 437 617 1.2E-41 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 SUPERFAMILY SSF55785 265 357 3.14E-5 T 23-04-2016 IPR000014 PAS domain RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 SMART SM00448 637 750 4.4E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS12460 c8cb2bf24b6c9b0ea4ad3c25daffe6f4 755 Gene3D G3DSA:3.40.50.2300 637 754 1.5E-29 T 23-04-2016 RD1_RS07530 a07ac99e6b7a0b35226daea3e238fcdb 259 Gene3D G3DSA:1.10.1060.10 130 257 5.9E-49 T 23-04-2016 RD1_RS07530 a07ac99e6b7a0b35226daea3e238fcdb 259 PANTHER PTHR11921:SF27 11 259 4.1E-175 T 23-04-2016 RD1_RS07530 a07ac99e6b7a0b35226daea3e238fcdb 259 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 80 88 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RD1_RS07530 a07ac99e6b7a0b35226daea3e238fcdb 259 SUPERFAMILY SSF54292 28 128 1.52E-31 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS07530 a07ac99e6b7a0b35226daea3e238fcdb 259 Pfam PF13534 4Fe-4S dicluster domain 169 242 9.5E-9 T 23-04-2016 RD1_RS07530 a07ac99e6b7a0b35226daea3e238fcdb 259 Gene3D G3DSA:3.10.20.30 22 128 1.3E-42 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS07530 a07ac99e6b7a0b35226daea3e238fcdb 259 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 170 181 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS07530 a07ac99e6b7a0b35226daea3e238fcdb 259 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 29 133 1.5E-31 T 23-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RD1_RS07530 a07ac99e6b7a0b35226daea3e238fcdb 259 SUPERFAMILY SSF46548 130 257 1.74E-35 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RD1_RS07530 a07ac99e6b7a0b35226daea3e238fcdb 259 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 32 251 1.2E-79 T 23-04-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RD1_RS07530 a07ac99e6b7a0b35226daea3e238fcdb 259 PANTHER PTHR11921 11 259 4.1E-175 T 23-04-2016 RD1_RS06660 4a890c3bdea47a713566a46749a35452 140 SUPERFAMILY SSF64263 1 119 6.15E-51 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06660 4a890c3bdea47a713566a46749a35452 140 Pfam PF01196 Ribosomal protein L17 20 116 8.2E-37 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06660 4a890c3bdea47a713566a46749a35452 140 PANTHER PTHR14413 1 123 1.6E-64 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06660 4a890c3bdea47a713566a46749a35452 140 TIGRFAM TIGR00059 L17: ribosomal protein bL17 6 117 6.4E-44 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06660 4a890c3bdea47a713566a46749a35452 140 Gene3D G3DSA:3.90.1030.10 1 117 4.8E-51 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06660 4a890c3bdea47a713566a46749a35452 140 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06660 4a890c3bdea47a713566a46749a35452 140 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.573 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06660 4a890c3bdea47a713566a46749a35452 140 PANTHER PTHR14413:SF5 1 123 1.6E-64 T 23-04-2016 RD1_RS15955 19a7674048548810a2397ea4145e0bb4 266 Gene3D G3DSA:3.60.15.10 3 262 6.1E-70 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS15955 19a7674048548810a2397ea4145e0bb4 266 SUPERFAMILY SSF56281 4 261 3.41E-43 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS15955 19a7674048548810a2397ea4145e0bb4 266 PANTHER PTHR12553 3 261 8.2E-57 T 23-04-2016 RD1_RS15955 19a7674048548810a2397ea4145e0bb4 266 Pfam PF12706 Beta-lactamase superfamily domain 52 233 2.3E-35 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS15955 19a7674048548810a2397ea4145e0bb4 266 SMART SM00849 37 236 9.3E-4 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS15955 19a7674048548810a2397ea4145e0bb4 266 PANTHER PTHR12553:SF7 3 261 8.2E-57 T 23-04-2016 RD1_RS16845 283a5879c52eda47399efb848cc96c8c 234 Pfam PF00072 Response regulator receiver domain 5 113 3.1E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS16845 283a5879c52eda47399efb848cc96c8c 234 SUPERFAMILY SSF52172 2 122 1.01E-34 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS16845 283a5879c52eda47399efb848cc96c8c 234 PANTHER PTHR26402 3 230 2.5E-71 T 23-04-2016 RD1_RS16845 283a5879c52eda47399efb848cc96c8c 234 SMART SM00862 152 228 7.3E-18 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS16845 283a5879c52eda47399efb848cc96c8c 234 Gene3D G3DSA:3.40.50.2300 2 121 6.0E-34 T 23-04-2016 RD1_RS16845 283a5879c52eda47399efb848cc96c8c 234 SMART SM00448 3 113 5.6E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS16845 283a5879c52eda47399efb848cc96c8c 234 SUPERFAMILY SSF46894 135 229 3.4E-22 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RD1_RS16845 283a5879c52eda47399efb848cc96c8c 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 228 5.0E-18 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS16845 283a5879c52eda47399efb848cc96c8c 234 PANTHER PTHR26402:SF596 3 230 2.5E-71 T 23-04-2016 RD1_RS16845 283a5879c52eda47399efb848cc96c8c 234 Gene3D G3DSA:1.10.10.10 131 230 3.1E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 Gene3D G3DSA:3.30.70.1430 576 680 1.7E-27 T 23-04-2016 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 Gene3D G3DSA:1.10.3850.10 823 1036 2.4E-56 T 23-04-2016 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 SUPERFAMILY SSF82714 186 272 2.35E-20 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 SUPERFAMILY SSF82693 682 730 8.63E-21 T 23-04-2016 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 Gene3D G3DSA:1.20.1640.10 293 507 1.0E-58 T 23-04-2016 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1043 0.0 T 23-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 PANTHER PTHR32063 1 1039 0.0 T 23-04-2016 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 SUPERFAMILY SSF82693 135 182 7.15E-25 T 23-04-2016 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 Gene3D G3DSA:3.30.2090.10 730 819 1.5E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 Gene3D G3DSA:3.30.2090.10 184 276 1.4E-27 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 SUPERFAMILY SSF82866 840 1035 8.76E-43 T 23-04-2016 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 SUPERFAMILY SSF82693 275 331 7.15E-25 T 23-04-2016 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 SUPERFAMILY SSF82693 817 866 8.63E-21 T 23-04-2016 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 Gene3D G3DSA:3.30.70.1430 38 139 6.9E-32 T 23-04-2016 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 Pfam PF00873 AcrB/AcrD/AcrF family 2 1036 0.0 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 SUPERFAMILY SSF82693 575 680 2.62E-24 T 23-04-2016 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 SUPERFAMILY SSF82866 297 496 8.76E-50 T 23-04-2016 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 SUPERFAMILY SSF82693 38 132 4.71E-26 T 23-04-2016 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 SUPERFAMILY SSF82714 731 817 4.32E-17 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 PANTHER PTHR32063:SF11 1 1039 0.0 T 23-04-2016 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 3.4E-86 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 PRINTS PR00702 Acriflavin resistance protein family signature 630 644 3.4E-86 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 3.4E-86 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 PRINTS PR00702 Acriflavin resistance protein family signature 337 360 3.4E-86 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 3.4E-86 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 PRINTS PR00702 Acriflavin resistance protein family signature 364 385 3.4E-86 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 PRINTS PR00702 Acriflavin resistance protein family signature 561 578 3.4E-86 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 PRINTS PR00702 Acriflavin resistance protein family signature 392 416 3.4E-86 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS07330 87bb4cfe5192732b4583989ec3f2d996 1047 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 3.4E-86 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS01700 7a55d793cac265b0793289b92c6fe35a 306 Pfam PF13449 Esterase-like activity of phytase 45 284 7.5E-31 T 23-04-2016 IPR027372 Phytase-like domain RD1_RS01700 7a55d793cac265b0793289b92c6fe35a 306 Gene3D G3DSA:2.120.10.30 47 134 4.8E-5 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RD1_RS01700 7a55d793cac265b0793289b92c6fe35a 306 Gene3D G3DSA:2.120.10.30 194 224 4.8E-5 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RD1_RS01700 7a55d793cac265b0793289b92c6fe35a 306 SUPERFAMILY SSF50956 28 224 6.02E-11 T 23-04-2016 RD1_RS01700 7a55d793cac265b0793289b92c6fe35a 306 PIRSF PIRSF031900 37 299 5.6E-34 T 23-04-2016 IPR014567 Uncharacterised conserved protein UCP031900 RD1_RS12395 0dcb8f085c342808e9774e1a2eb7e4af 104 PANTHER PTHR34068:SF1 1 103 2.5E-38 T 23-04-2016 RD1_RS12395 0dcb8f085c342808e9774e1a2eb7e4af 104 Gene3D G3DSA:3.30.110.70 1 103 6.7E-37 T 23-04-2016 IPR002765 Uncharacterised protein family UPF0145 RD1_RS12395 0dcb8f085c342808e9774e1a2eb7e4af 104 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 103 24.073 T 23-04-2016 IPR002765 Uncharacterised protein family UPF0145 RD1_RS12395 0dcb8f085c342808e9774e1a2eb7e4af 104 Pfam PF01906 Putative heavy-metal-binding 1 103 7.8E-39 T 23-04-2016 IPR002765 Uncharacterised protein family UPF0145 RD1_RS12395 0dcb8f085c342808e9774e1a2eb7e4af 104 SUPERFAMILY SSF117782 1 103 6.54E-36 T 23-04-2016 IPR002765 Uncharacterised protein family UPF0145 RD1_RS12395 0dcb8f085c342808e9774e1a2eb7e4af 104 PANTHER PTHR34068 1 103 2.5E-38 T 23-04-2016 RD1_RS08470 164c5700c67c38e858c7865c113d6ec1 377 SUPERFAMILY SSF53383 49 374 2.96E-68 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS08470 164c5700c67c38e858c7865c113d6ec1 377 Gene3D G3DSA:3.40.640.10 49 240 1.5E-49 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS08470 164c5700c67c38e858c7865c113d6ec1 377 PANTHER PTHR11751 36 360 9.6E-56 T 23-04-2016 RD1_RS08470 164c5700c67c38e858c7865c113d6ec1 377 Gene3D G3DSA:3.90.1150.10 241 373 1.1E-12 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS08470 164c5700c67c38e858c7865c113d6ec1 377 Pfam PF00155 Aminotransferase class I and II 51 357 3.8E-35 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 5.9E-6 T 23-04-2016 RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 145 163 5.9E-6 T 23-04-2016 RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 346 368 5.9E-6 T 23-04-2016 RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 PANTHER PTHR11806 2 620 0.0 T 23-04-2016 RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 Gene3D G3DSA:3.50.50.60 4 227 8.6E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.9E-5 T 23-04-2016 RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 148 157 1.9E-5 T 23-04-2016 RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4 613 1.0E-240 T 23-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 PANTHER PTHR11806:SF0 2 620 0.0 T 23-04-2016 RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 SMART SM01228 538 609 1.1E-35 T 23-04-2016 RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 269 283 - T 23-04-2016 IPR020595 MnmG-related, conserved site RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 2 616 40.103 T 23-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 364 387 - T 23-04-2016 IPR020595 MnmG-related, conserved site RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 Pfam PF13932 GidA associated domain 398 607 5.3E-64 T 23-04-2016 IPR026904 GidA associated domain 3 RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 Pfam PF01134 Glucose inhibited division protein A 5 394 2.9E-155 T 23-04-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 SUPERFAMILY SSF51905 2 63 1.53E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02015 d38723ed5c6b477bbc990bade745f4fc 620 SUPERFAMILY SSF51905 94 257 1.53E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03450 8a671e278f7726d27d1330a0229eaeed 222 Pfam PF03070 TENA/THI-4/PQQC family 14 221 1.0E-42 T 23-04-2016 IPR004305 Thiaminase-2/PQQC RD1_RS03450 8a671e278f7726d27d1330a0229eaeed 222 Gene3D G3DSA:1.20.910.10 9 221 1.1E-72 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RD1_RS03450 8a671e278f7726d27d1330a0229eaeed 222 PANTHER PTHR20858 14 180 5.9E-59 T 23-04-2016 RD1_RS03450 8a671e278f7726d27d1330a0229eaeed 222 PANTHER PTHR20858:SF17 14 180 5.9E-59 T 23-04-2016 RD1_RS03450 8a671e278f7726d27d1330a0229eaeed 222 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 15 220 3.7E-41 T 23-04-2016 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356|UniPathway: UPA00060 RD1_RS03450 8a671e278f7726d27d1330a0229eaeed 222 SUPERFAMILY SSF48613 10 219 1.85E-67 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RD1_RS05360 0559318eff93a0a40ed13d1f3d0e6973 429 SUPERFAMILY SSF53383 11 429 3.34E-178 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS05360 0559318eff93a0a40ed13d1f3d0e6973 429 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 15 429 50.523 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RD1_RS05360 0559318eff93a0a40ed13d1f3d0e6973 429 Gene3D G3DSA:3.90.1150.10 292 429 7.5E-54 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS05360 0559318eff93a0a40ed13d1f3d0e6973 429 PIRSF PIRSF000412 2 429 7.1E-165 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RD1_RS05360 0559318eff93a0a40ed13d1f3d0e6973 429 Gene3D G3DSA:3.40.640.10 45 291 9.0E-104 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS05360 0559318eff93a0a40ed13d1f3d0e6973 429 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 230 246 - T 23-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RD1_RS05360 0559318eff93a0a40ed13d1f3d0e6973 429 PANTHER PTHR11680 1 429 1.6E-244 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RD1_RS05360 0559318eff93a0a40ed13d1f3d0e6973 429 Pfam PF00464 Serine hydroxymethyltransferase 16 393 1.7E-173 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RD1_RS10360 ec106c360e8821821d75426282a2ea47 285 PANTHER PTHR24559:SF185 22 252 4.2E-90 T 23-04-2016 RD1_RS10360 ec106c360e8821821d75426282a2ea47 285 PANTHER PTHR24559 22 252 4.2E-90 T 23-04-2016 RD1_RS10360 ec106c360e8821821d75426282a2ea47 285 SUPERFAMILY SSF53098 94 253 3.41E-35 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS10360 ec106c360e8821821d75426282a2ea47 285 Pfam PF13683 Integrase core domain 185 250 5.0E-29 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS10360 ec106c360e8821821d75426282a2ea47 285 Pfam PF13276 HTH-like domain 32 83 1.5E-8 T 23-04-2016 IPR025948 HTH-like domain RD1_RS10360 ec106c360e8821821d75426282a2ea47 285 Gene3D G3DSA:3.30.420.10 95 250 4.3E-39 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS15515 ec106c360e8821821d75426282a2ea47 285 PANTHER PTHR24559:SF185 22 252 4.2E-90 T 23-04-2016 RD1_RS15515 ec106c360e8821821d75426282a2ea47 285 PANTHER PTHR24559 22 252 4.2E-90 T 23-04-2016 RD1_RS15515 ec106c360e8821821d75426282a2ea47 285 SUPERFAMILY SSF53098 94 253 3.41E-35 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS15515 ec106c360e8821821d75426282a2ea47 285 Pfam PF13683 Integrase core domain 185 250 5.0E-29 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS15515 ec106c360e8821821d75426282a2ea47 285 Pfam PF13276 HTH-like domain 32 83 1.5E-8 T 23-04-2016 IPR025948 HTH-like domain RD1_RS15515 ec106c360e8821821d75426282a2ea47 285 Gene3D G3DSA:3.30.420.10 95 250 4.3E-39 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS10470 135e01958d690c7cf462ac1c9dafff57 76 SUPERFAMILY SSF64307 3 75 2.22E-24 T 23-04-2016 IPR001455 TusA-like domain RD1_RS10470 135e01958d690c7cf462ac1c9dafff57 76 PANTHER PTHR33279 8 75 1.1E-16 T 23-04-2016 RD1_RS10470 135e01958d690c7cf462ac1c9dafff57 76 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 8 32 - T 23-04-2016 IPR001455 TusA-like domain RD1_RS10470 135e01958d690c7cf462ac1c9dafff57 76 Gene3D G3DSA:3.30.110.40 5 76 2.5E-26 T 23-04-2016 IPR001455 TusA-like domain RD1_RS10470 135e01958d690c7cf462ac1c9dafff57 76 Pfam PF01206 Sulfurtransferase TusA 7 75 8.8E-21 T 23-04-2016 IPR001455 TusA-like domain RD1_RS02120 a96911360b26a875f8d27baef42c2d2c 158 Gene3D G3DSA:3.40.50.300 7 155 8.2E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02120 a96911360b26a875f8d27baef42c2d2c 158 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 16 134 9.4E-26 T 23-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RD1_RS02120 a96911360b26a875f8d27baef42c2d2c 158 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 12 130 1.6E-32 T 23-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RD1_RS02120 a96911360b26a875f8d27baef42c2d2c 158 SUPERFAMILY SSF52540 25 129 1.45E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02120 a96911360b26a875f8d27baef42c2d2c 158 PANTHER PTHR33540 7 148 1.8E-34 T 23-04-2016 RD1_RS02120 a96911360b26a875f8d27baef42c2d2c 158 PANTHER PTHR33540:SF2 7 148 1.8E-34 T 23-04-2016 RD1_RS00625 b3e25ef50f54da55ee293c4800732aed 299 ProSitePatterns PS00692 NifH/frxC family signature 2. 155 168 - T 23-04-2016 IPR030655 NifH/chlL conserved site RD1_RS00625 b3e25ef50f54da55ee293c4800732aed 299 Gene3D G3DSA:3.40.50.300 35 296 1.5E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00625 b3e25ef50f54da55ee293c4800732aed 299 SUPERFAMILY SSF52540 33 295 1.27E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00625 b3e25ef50f54da55ee293c4800732aed 299 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 36 296 6.9E-88 T 23-04-2016 RD1_RS00625 b3e25ef50f54da55ee293c4800732aed 299 PANTHER PTHR13696:SF74 38 287 4.4E-107 T 23-04-2016 RD1_RS00625 b3e25ef50f54da55ee293c4800732aed 299 PANTHER PTHR13696 38 287 4.4E-107 T 23-04-2016 RD1_RS00625 b3e25ef50f54da55ee293c4800732aed 299 PRINTS PR00091 Nitrogenase component II signature 154 169 2.4E-32 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RD1_RS00625 b3e25ef50f54da55ee293c4800732aed 299 PRINTS PR00091 Nitrogenase component II signature 39 52 2.4E-32 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RD1_RS00625 b3e25ef50f54da55ee293c4800732aed 299 PRINTS PR00091 Nitrogenase component II signature 116 130 2.4E-32 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RD1_RS00625 b3e25ef50f54da55ee293c4800732aed 299 PRINTS PR00091 Nitrogenase component II signature 61 76 2.4E-32 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RD1_RS00625 b3e25ef50f54da55ee293c4800732aed 299 PIRSF PIRSF000363 32 299 1.6E-105 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RD1_RS00625 b3e25ef50f54da55ee293c4800732aed 299 Hamap MF_00355 Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein [bchL]. 34 299 55.922 T 23-04-2016 IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein GO:0005524|GO:0015995|GO:0016730|GO:0019685|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RD1_RS00625 b3e25ef50f54da55ee293c4800732aed 299 ProSitePatterns PS00746 NifH/frxC family signature 1. 118 130 - T 23-04-2016 IPR030655 NifH/chlL conserved site RD1_RS00625 b3e25ef50f54da55ee293c4800732aed 299 TIGRFAM TIGR01281 DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein 35 297 6.8E-130 T 23-04-2016 IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein GO:0005524|GO:0015995|GO:0016730|GO:0019685|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 694 780 1.0E-14 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 SUPERFAMILY SSF103025 420 705 2.51E-80 T 23-04-2016 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 Pfam PF01571 Aminomethyltransferase folate-binding domain 427 688 2.0E-72 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 Gene3D G3DSA:3.30.1360.120 423 488 4.6E-28 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 Gene3D G3DSA:3.30.1360.120 576 666 4.6E-28 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 SUPERFAMILY SSF54373 227 327 9.81E-26 T 23-04-2016 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 PANTHER PTHR13847 1 447 1.0E-152 T 23-04-2016 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 SUPERFAMILY SSF101790 710 795 2.29E-15 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 Pfam PF01266 FAD dependent oxidoreductase 12 365 2.0E-58 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 Gene3D G3DSA:3.50.50.60 328 386 4.9E-62 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 Gene3D G3DSA:3.50.50.60 3 87 4.9E-62 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 Gene3D G3DSA:3.50.50.60 146 224 4.9E-62 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 Gene3D G3DSA:3.30.9.10 91 145 4.1E-46 T 23-04-2016 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 Gene3D G3DSA:3.30.9.10 225 327 4.1E-46 T 23-04-2016 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 Gene3D G3DSA:3.30.70.1400 489 572 3.9E-21 T 23-04-2016 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 Pfam PF16350 FAD dependent oxidoreductase central domain 370 423 3.3E-12 T 23-04-2016 IPR032503 FAD dependent oxidoreductase, central domain RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 PANTHER PTHR13847:SF193 1 447 1.0E-152 T 23-04-2016 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 Gene3D G3DSA:2.40.30.110 710 780 9.0E-17 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 SUPERFAMILY SSF51905 328 408 3.56E-62 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS18825 b6451424df7f324961466ad4f9c69781 796 SUPERFAMILY SSF51905 10 225 3.56E-62 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 Gene3D G3DSA:1.20.1580.10 698 824 1.8E-53 T 23-04-2016 RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 PANTHER PTHR32282:SF2 3 948 0.0 T 23-04-2016 RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 SUPERFAMILY SSF52540 448 575 2.32E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 SUPERFAMILY SSF52540 5 207 2.32E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 Gene3D G3DSA:3.40.50.300 825 947 2.4E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 Gene3D G3DSA:3.40.50.300 614 671 2.4E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 Gene3D G3DSA:3.40.50.300 3 54 8.5E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 Gene3D G3DSA:3.40.50.300 484 601 8.5E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 7 929 0.0 T 23-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 ProSitePatterns PS00211 ABC transporters family signature. 834 848 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 ProSitePatterns PS00211 ABC transporters family signature. 493 507 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 Gene3D G3DSA:3.30.1490.20 133 156 3.5E-24 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 Gene3D G3DSA:3.30.1490.20 203 242 3.5E-24 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 PANTHER PTHR32282 3 948 0.0 T 23-04-2016 RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 SUPERFAMILY SSF52540 627 915 9.77E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 Gene3D G3DSA:1.10.8.280 291 410 8.4E-42 T 23-04-2016 RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 Gene3D G3DSA:1.20.1580.10 255 288 3.2E-51 T 23-04-2016 RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 Gene3D G3DSA:1.20.1580.10 411 483 3.2E-51 T 23-04-2016 RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 Gene3D G3DSA:1.20.1580.10 94 132 3.2E-51 T 23-04-2016 RD1_RS13765 904a8b77046668dffbeb65bed96e236a 952 Hamap MF_00205 UvrABC system protein A [uvrA]. 4 944 22.664 T 23-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 RD1_RS03110 3d0fd83a1783c4202913f3cb51b6e056 316 Gene3D G3DSA:2.60.120.620 1 262 4.4E-50 T 23-04-2016 RD1_RS03110 3d0fd83a1783c4202913f3cb51b6e056 316 SUPERFAMILY SSF51197 1 257 2.93E-47 T 23-04-2016 RD1_RS03110 3d0fd83a1783c4202913f3cb51b6e056 316 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 10 246 5.6E-25 T 23-04-2016 IPR008775 Phytanoyl-CoA dioxygenase RD1_RS03110 3d0fd83a1783c4202913f3cb51b6e056 316 PANTHER PTHR20883 1 296 4.9E-35 T 23-04-2016 RD1_RS14510 73c1706eadeb529631f3c50a7dd41095 323 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 5 323 1.2E-120 T 23-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RD1_RS14510 73c1706eadeb529631f3c50a7dd41095 323 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 234 323 9.0E-36 T 23-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RD1_RS14510 73c1706eadeb529631f3c50a7dd41095 323 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 3 323 69.372 T 23-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RD1_RS14510 73c1706eadeb529631f3c50a7dd41095 323 PANTHER PTHR34069 2 323 2.5E-118 T 23-04-2016 RD1_RS14510 73c1706eadeb529631f3c50a7dd41095 323 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 108 191 3.8E-33 T 23-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RD1_RS14510 73c1706eadeb529631f3c50a7dd41095 323 Gene3D G3DSA:3.40.47.10 4 162 7.3E-63 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS14510 73c1706eadeb529631f3c50a7dd41095 323 SUPERFAMILY SSF53901 8 323 2.47E-72 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS14510 73c1706eadeb529631f3c50a7dd41095 323 PANTHER PTHR34069:SF2 2 323 2.5E-118 T 23-04-2016 RD1_RS14510 73c1706eadeb529631f3c50a7dd41095 323 Gene3D G3DSA:3.40.47.10 163 323 2.2E-52 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS02740 2355eaef94dfe4d46e2a6c0f169a9662 173 SUPERFAMILY SSF55068 2 160 3.79E-63 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RD1_RS02740 2355eaef94dfe4d46e2a6c0f169a9662 173 Gene3D G3DSA:3.30.1060.10 3 153 2.0E-63 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RD1_RS02740 2355eaef94dfe4d46e2a6c0f169a9662 173 Pfam PF01625 Peptide methionine sulfoxide reductase 6 152 1.0E-55 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RD1_RS02740 2355eaef94dfe4d46e2a6c0f169a9662 173 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 5 152 2.4E-48 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RD1_RS02740 2355eaef94dfe4d46e2a6c0f169a9662 173 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 3 158 33.467 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RD1_RS02740 2355eaef94dfe4d46e2a6c0f169a9662 173 PANTHER PTHR10173 3 152 7.1E-66 T 23-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 RD1_RS02740 2355eaef94dfe4d46e2a6c0f169a9662 173 PANTHER PTHR10173:SF6 3 152 7.1E-66 T 23-04-2016 RD1_RS11700 715f8d67fe70489ae0b4a092b1979e16 314 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 161 279 1.5E-23 T 23-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RD1_RS11700 715f8d67fe70489ae0b4a092b1979e16 314 Gene3D G3DSA:3.40.50.720 1 159 2.6E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11700 715f8d67fe70489ae0b4a092b1979e16 314 PIRSF PIRSF000103 1 288 3.3E-49 T 23-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 RD1_RS11700 715f8d67fe70489ae0b4a092b1979e16 314 Gene3D G3DSA:1.10.1040.10 161 288 5.7E-26 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS11700 715f8d67fe70489ae0b4a092b1979e16 314 SUPERFAMILY SSF51735 1 159 6.07E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11700 715f8d67fe70489ae0b4a092b1979e16 314 PANTHER PTHR22981 1 289 1.8E-56 T 23-04-2016 RD1_RS11700 715f8d67fe70489ae0b4a092b1979e16 314 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 158 8.1E-33 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 RD1_RS11700 715f8d67fe70489ae0b4a092b1979e16 314 SUPERFAMILY SSF48179 159 288 1.81E-24 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 SUPERFAMILY SSF46589 963 1027 3.24E-14 T 23-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 PANTHER PTHR11946:SF5 959 1021 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 PANTHER PTHR11946:SF5 242 346 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 PANTHER PTHR11946:SF5 406 546 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 PANTHER PTHR11946:SF5 1 218 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 PANTHER PTHR11946:SF5 577 941 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 Hamap MF_02004 Valine--tRNA ligase [valS]. 3 1028 14.514 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 Gene3D G3DSA:3.90.740.10 209 401 1.7E-34 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 SUPERFAMILY SSF47323 717 978 9.16E-52 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 Gene3D G3DSA:3.40.50.620 433 703 5.6E-137 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 Gene3D G3DSA:3.40.50.620 5 208 5.6E-137 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 PANTHER PTHR11946 959 1021 0.0 T 23-04-2016 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 PANTHER PTHR11946 242 346 0.0 T 23-04-2016 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 PANTHER PTHR11946 406 546 0.0 T 23-04-2016 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 PANTHER PTHR11946 1 218 0.0 T 23-04-2016 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 PANTHER PTHR11946 577 941 0.0 T 23-04-2016 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 SUPERFAMILY SSF50677 207 339 8.24E-44 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 SUPERFAMILY SSF50677 370 401 8.24E-44 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 Gene3D G3DSA:1.10.287.380 956 1027 6.5E-8 T 23-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 PRINTS PR00986 Valyl-tRNA synthetase signature 580 601 4.0E-29 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 PRINTS PR00986 Valyl-tRNA synthetase signature 617 635 4.0E-29 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 PRINTS PR00986 Valyl-tRNA synthetase signature 39 50 4.0E-29 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 PRINTS PR00986 Valyl-tRNA synthetase signature 264 281 4.0E-29 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 Gene3D G3DSA:1.10.730.10 705 896 1.9E-57 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 SUPERFAMILY SSF52374 2 207 2.09E-129 T 23-04-2016 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 SUPERFAMILY SSF52374 547 715 2.09E-129 T 23-04-2016 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 SUPERFAMILY SSF52374 433 516 2.09E-129 T 23-04-2016 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 963 1027 2.2E-20 T 23-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 46 57 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 Pfam PF08264 Anticodon-binding domain of tRNA 757 900 2.6E-37 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 16 401 3.7E-95 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS08090 0acd2cce4ec8cf290a62deac40f855f3 1031 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 428 705 9.1E-76 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS18290 e04406d560c3e99ef89ca88888a4dc35 228 Gene3D G3DSA:1.10.10.10 4 76 8.8E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18290 e04406d560c3e99ef89ca88888a4dc35 228 PANTHER PTHR11751 15 101 8.8E-21 T 23-04-2016 RD1_RS18290 e04406d560c3e99ef89ca88888a4dc35 228 SMART SM00895 85 209 3.4E-10 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS18290 e04406d560c3e99ef89ca88888a4dc35 228 SUPERFAMILY SSF48008 83 211 4.97E-19 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS18290 e04406d560c3e99ef89ca88888a4dc35 228 Pfam PF07729 FCD domain 89 208 9.9E-17 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS18290 e04406d560c3e99ef89ca88888a4dc35 228 SUPERFAMILY SSF46785 9 79 2.87E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18290 e04406d560c3e99ef89ca88888a4dc35 228 SMART SM00345 17 75 1.3E-15 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS18290 e04406d560c3e99ef89ca88888a4dc35 228 PANTHER PTHR11751:SF362 15 101 8.8E-21 T 23-04-2016 RD1_RS18290 e04406d560c3e99ef89ca88888a4dc35 228 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 75 1.9E-17 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS18290 e04406d560c3e99ef89ca88888a4dc35 228 Gene3D G3DSA:1.20.120.530 79 217 5.0E-21 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS10320 e5338627c32984e44f86688bf49c29ec 456 SUPERFAMILY SSF56672 85 191 6.4E-12 T 23-04-2016 RD1_RS10320 e5338627c32984e44f86688bf49c29ec 456 SUPERFAMILY SSF56672 230 331 6.4E-12 T 23-04-2016 RD1_RS10320 e5338627c32984e44f86688bf49c29ec 456 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 246 352 3.7E-13 T 23-04-2016 IPR000477 Reverse transcriptase domain RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 PIRSF PIRSF000149 1 332 4.9E-126 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 151 1.8E-45 T 23-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 PANTHER PTHR10836:SF50 1 329 7.1E-170 T 23-04-2016 RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 Gene3D G3DSA:3.30.360.10 160 314 5.4E-71 T 23-04-2016 RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 SMART SM00846 3 151 9.4E-66 T 23-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 SUPERFAMILY SSF51735 1 178 4.05E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 Gene3D G3DSA:3.40.50.720 1 159 8.4E-61 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 156 312 6.5E-63 T 23-04-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 1.9E-36 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 1.9E-36 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 145 163 1.9E-36 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 172 188 1.9E-36 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 1.9E-36 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 PANTHER PTHR10836 1 329 7.1E-170 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 SUPERFAMILY SSF55347 151 313 6.25E-67 T 23-04-2016 RD1_RS13735 8510a2508f59e0d54117b5d09ae26bd5 332 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 8.1E-119 T 23-04-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS10565 5460da43a3a8ecc5752eb2719a74887e 448 PANTHER PTHR30047:SF2 1 428 1.1E-121 T 23-04-2016 RD1_RS10565 5460da43a3a8ecc5752eb2719a74887e 448 PANTHER PTHR30047 1 428 1.1E-121 T 23-04-2016 RD1_RS10565 5460da43a3a8ecc5752eb2719a74887e 448 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 1 427 5.1E-133 T 23-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 RD1_RS10600 91d70e3a9290bdbb3ec9ffd8ce873ec7 778 PANTHER PTHR30347 430 768 2.7E-86 T 23-04-2016 RD1_RS10600 91d70e3a9290bdbb3ec9ffd8ce873ec7 778 PANTHER PTHR30347:SF3 430 768 2.7E-86 T 23-04-2016 RD1_RS10600 91d70e3a9290bdbb3ec9ffd8ce873ec7 778 Pfam PF12607 Protein of unknown function (DUF3772) 128 187 2.8E-16 T 23-04-2016 IPR022249 Domain of unknown function DUF3772 RD1_RS10600 91d70e3a9290bdbb3ec9ffd8ce873ec7 778 SUPERFAMILY SSF82689 667 766 5.1E-27 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RD1_RS10600 91d70e3a9290bdbb3ec9ffd8ce873ec7 778 SUPERFAMILY SSF50182 599 664 5.56E-18 T 23-04-2016 IPR010920 LSM domain RD1_RS10600 91d70e3a9290bdbb3ec9ffd8ce873ec7 778 Gene3D G3DSA:3.30.70.100 671 753 4.1E-22 T 23-04-2016 RD1_RS10600 91d70e3a9290bdbb3ec9ffd8ce873ec7 778 Gene3D G3DSA:2.30.30.60 614 663 2.2E-17 T 23-04-2016 RD1_RS10600 91d70e3a9290bdbb3ec9ffd8ce873ec7 778 Pfam PF00924 Mechanosensitive ion channel 560 755 2.5E-54 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RD1_RS10600 91d70e3a9290bdbb3ec9ffd8ce873ec7 778 SUPERFAMILY SSF82861 514 597 5.89E-12 T 23-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RD1_RS11645 1d01126e1a37ad2b4d96e8434d2f005a 520 Pfam PF06253 Trimethylamine methyltransferase (MTTB) 11 515 4.2E-223 T 23-04-2016 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250|UniPathway: UPA00645 RD1_RS11645 1d01126e1a37ad2b4d96e8434d2f005a 520 PIRSF PIRSF037567 1 520 7.5E-184 T 23-04-2016 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250|UniPathway: UPA00645 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 594 629 2.9E-12 T 23-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 Gene3D G3DSA:3.30.65.10 596 630 1.9E-8 T 23-04-2016 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 SMART SM00493 1 101 3.1E-27 T 23-04-2016 IPR006171 Toprim domain RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 Pfam PF01751 Toprim domain 3 116 7.8E-24 T 23-04-2016 IPR006171 Toprim domain RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 PANTHER PTHR11390 1 628 1.9E-302 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 4 628 1.8E-224 T 23-04-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 SMART SM00436 107 195 2.5E-45 T 23-04-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 286 300 - T 23-04-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 Hamap MF_00952 DNA topoisomerase 1 [topA]. 1 723 53.979 T 23-04-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 SUPERFAMILY SSF56712 2 563 5.49E-188 T 23-04-2016 IPR023405 DNA topoisomerase, type IA, core domain RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 SUPERFAMILY SSF56712 594 603 5.49E-188 T 23-04-2016 IPR023405 DNA topoisomerase, type IA, core domain RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 Gene3D G3DSA:3.40.50.140 3 136 4.8E-41 T 23-04-2016 IPR006171 Toprim domain RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 PANTHER PTHR11390:SF27 1 628 1.9E-302 T 23-04-2016 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 Gene3D G3DSA:2.70.20.10 316 451 6.9E-39 T 23-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 Gene3D G3DSA:2.70.20.10 189 313 2.4E-27 T 23-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 Gene3D G3DSA:1.10.460.10 137 188 1.4E-56 T 23-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 Gene3D G3DSA:1.10.460.10 452 562 1.4E-56 T 23-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 SMART SM00437 249 512 1.7E-113 T 23-04-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 SUPERFAMILY SSF57783 593 630 3.74E-6 T 23-04-2016 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 Pfam PF01131 DNA topoisomerase 131 549 5.5E-127 T 23-04-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 Pfam PF13368 Topoisomerase C-terminal repeat 654 708 1.6E-10 T 23-04-2016 IPR025589 Topoisomerase C-terminal repeat RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 Pfam PF13368 Topoisomerase C-terminal repeat 711 772 6.4E-19 T 23-04-2016 IPR025589 Topoisomerase C-terminal repeat RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 Pfam PF13368 Topoisomerase C-terminal repeat 786 840 6.3E-20 T 23-04-2016 IPR025589 Topoisomerase C-terminal repeat RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 475 489 5.6E-35 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 368 384 5.6E-35 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 291 300 5.6E-35 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 165 183 5.6E-35 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RD1_RS09845 ae729373b0e36de9dad5d1cf96b70e47 878 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 75 88 5.6E-35 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RD1_RS07915 7a1178472d860d46ee8b25205fa703da 165 PANTHER PTHR35011 2 159 2.0E-20 T 23-04-2016 RD1_RS07915 7a1178472d860d46ee8b25205fa703da 165 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 26 159 1.6E-20 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS07915 7a1178472d860d46ee8b25205fa703da 165 PANTHER PTHR35011:SF4 2 159 2.0E-20 T 23-04-2016 RD1_RS05550 84042d6cd8415571d130c651ba93da72 310 Gene3D G3DSA:3.40.50.720 96 276 2.5E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05550 84042d6cd8415571d130c651ba93da72 310 PANTHER PTHR10996:SF114 37 308 5.8E-78 T 23-04-2016 RD1_RS05550 84042d6cd8415571d130c651ba93da72 310 PANTHER PTHR10996 37 308 5.8E-78 T 23-04-2016 RD1_RS05550 84042d6cd8415571d130c651ba93da72 310 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 214 230 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RD1_RS05550 84042d6cd8415571d130c651ba93da72 310 SUPERFAMILY SSF51735 97 276 7.65E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05550 84042d6cd8415571d130c651ba93da72 310 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 123 275 1.3E-41 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RD1_RS10350 0bb91de27aa3784fab9a077f4d99f5ea 375 Pfam PF00072 Response regulator receiver domain 17 124 1.1E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS10350 0bb91de27aa3784fab9a077f4d99f5ea 375 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 15 360 31.19 T 23-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RD1_RS10350 0bb91de27aa3784fab9a077f4d99f5ea 375 Pfam PF01339 CheB methylesterase 177 355 3.8E-47 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RD1_RS10350 0bb91de27aa3784fab9a077f4d99f5ea 375 SUPERFAMILY SSF52738 175 358 1.44E-51 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RD1_RS10350 0bb91de27aa3784fab9a077f4d99f5ea 375 Gene3D G3DSA:3.40.50.180 174 357 5.9E-59 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RD1_RS10350 0bb91de27aa3784fab9a077f4d99f5ea 375 SUPERFAMILY SSF52172 15 125 3.27E-29 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS10350 0bb91de27aa3784fab9a077f4d99f5ea 375 Gene3D G3DSA:3.40.50.2300 13 125 7.9E-28 T 23-04-2016 RD1_RS10350 0bb91de27aa3784fab9a077f4d99f5ea 375 PANTHER PTHR24421:SF21 16 375 1.3E-83 T 23-04-2016 RD1_RS10350 0bb91de27aa3784fab9a077f4d99f5ea 375 SMART SM00448 15 129 2.0E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS10350 0bb91de27aa3784fab9a077f4d99f5ea 375 PIRSF PIRSF000876 13 364 1.6E-106 T 23-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RD1_RS10350 0bb91de27aa3784fab9a077f4d99f5ea 375 PANTHER PTHR24421 16 375 1.3E-83 T 23-04-2016 RD1_RS00345 784e44ed2e6b9ce6e4b5c1f9a6f2e0c4 219 Pfam PF04403 Paraquat-inducible protein A 53 209 1.3E-47 T 23-04-2016 IPR007498 Paraquat-inducible protein A RD1_RS00345 784e44ed2e6b9ce6e4b5c1f9a6f2e0c4 219 PANTHER PTHR30462 20 210 4.1E-45 T 23-04-2016 RD1_RS00345 784e44ed2e6b9ce6e4b5c1f9a6f2e0c4 219 PANTHER PTHR30462:SF3 20 210 4.1E-45 T 23-04-2016 RD1_RS18220 285eb6e04b3427530f02c27049961e74 363 SUPERFAMILY SSF51182 91 356 2.57E-29 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS18220 285eb6e04b3427530f02c27049961e74 363 Gene3D G3DSA:2.60.120.10 242 361 1.5E-21 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS18220 285eb6e04b3427530f02c27049961e74 363 Gene3D G3DSA:2.60.120.10 106 224 1.3E-25 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 Gene3D G3DSA:2.30.42.10 185 282 5.1E-21 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 SUPERFAMILY SSF50156 140 273 1.18E-18 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 PANTHER PTHR22939:SF79 19 282 7.6E-92 T 23-04-2016 RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 Gene3D G3DSA:2.40.10.10 80 184 2.5E-45 T 23-04-2016 RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 SUPERFAMILY SSF50494 19 178 7.51E-50 T 23-04-2016 IPR009003 Peptidase S1, PA clan RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 Pfam PF13180 PDZ domain 182 279 1.2E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 SMART SM00228 182 272 9.2E-8 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 Gene3D G3DSA:2.40.10.10 19 79 6.4E-18 T 23-04-2016 RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 Pfam PF13365 Trypsin-like peptidase domain 19 143 1.0E-28 T 23-04-2016 RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 PANTHER PTHR22939 19 282 7.6E-92 T 23-04-2016 RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 PRINTS PR00834 HtrA/DegQ protease family signature 36 56 1.2E-46 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 PRINTS PR00834 HtrA/DegQ protease family signature 78 102 1.2E-46 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 PRINTS PR00834 HtrA/DegQ protease family signature 114 131 1.2E-46 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 PRINTS PR00834 HtrA/DegQ protease family signature 136 153 1.2E-46 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 PRINTS PR00834 HtrA/DegQ protease family signature 15 27 1.2E-46 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RD1_RS03555 74631d6139ef3d934473c4d2a5f9266e 284 PRINTS PR00834 HtrA/DegQ protease family signature 230 242 1.2E-46 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RD1_RS10575 48ddee291bb2e85f604e0e1bd3f68296 472 Pfam PF03441 FAD binding domain of DNA photolyase 270 468 3.2E-68 T 23-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain RD1_RS10575 48ddee291bb2e85f604e0e1bd3f68296 472 PANTHER PTHR11455 4 469 4.3E-144 T 23-04-2016 RD1_RS10575 48ddee291bb2e85f604e0e1bd3f68296 472 Gene3D G3DSA:1.25.40.80 199 277 2.3E-26 T 23-04-2016 RD1_RS10575 48ddee291bb2e85f604e0e1bd3f68296 472 PANTHER PTHR11455:SF18 4 469 4.3E-144 T 23-04-2016 RD1_RS10575 48ddee291bb2e85f604e0e1bd3f68296 472 Gene3D G3DSA:1.10.579.10 278 469 1.1E-64 T 23-04-2016 RD1_RS10575 48ddee291bb2e85f604e0e1bd3f68296 472 Pfam PF00875 DNA photolyase 6 156 3.0E-45 T 23-04-2016 IPR006050 DNA photolyase, N-terminal RD1_RS10575 48ddee291bb2e85f604e0e1bd3f68296 472 SUPERFAMILY SSF48173 197 468 1.14E-92 T 23-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain RD1_RS10575 48ddee291bb2e85f604e0e1bd3f68296 472 Gene3D G3DSA:3.40.50.620 3 161 9.9E-43 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS10575 48ddee291bb2e85f604e0e1bd3f68296 472 SUPERFAMILY SSF52425 4 187 9.68E-54 T 23-04-2016 IPR006050 DNA photolyase, N-terminal RD1_RS10575 48ddee291bb2e85f604e0e1bd3f68296 472 PRINTS PR00147 DNA photolyase signature 380 394 6.1E-19 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 RD1_RS10575 48ddee291bb2e85f604e0e1bd3f68296 472 PRINTS PR00147 DNA photolyase signature 341 359 6.1E-19 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 RD1_RS10575 48ddee291bb2e85f604e0e1bd3f68296 472 PRINTS PR00147 DNA photolyase signature 139 155 6.1E-19 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 RD1_RS10575 48ddee291bb2e85f604e0e1bd3f68296 472 PRINTS PR00147 DNA photolyase signature 321 337 6.1E-19 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 ProSitePatterns PS00902 Glutamate 5-kinase signature. 211 228 - T 23-04-2016 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 Gene3D G3DSA:2.30.130.10 276 366 2.3E-25 T 23-04-2016 IPR015947 PUA-like domain RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 Pfam PF00696 Amino acid kinase family 9 238 5.8E-44 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 TIGRFAM TIGR01027 proB: glutamate 5-kinase 10 367 3.7E-114 T 23-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 SUPERFAMILY SSF88697 278 368 3.28E-22 T 23-04-2016 IPR015947 PUA-like domain RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 Hamap MF_00456 Glutamate 5-kinase [proB]. 8 261 33.286 T 23-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 PANTHER PTHR11063:SF12 5 371 1.5E-107 T 23-04-2016 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 SMART SM00359 279 361 2.5E-14 T 23-04-2016 IPR002478 PUA domain GO:0003723 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 PANTHER PTHR11063 5 371 1.5E-107 T 23-04-2016 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 Pfam PF01472 PUA domain 279 352 1.1E-19 T 23-04-2016 IPR002478 PUA domain GO:0003723 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 PRINTS PR00474 Glutamate 5-kinase family signature 213 233 4.4E-48 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 PRINTS PR00474 Glutamate 5-kinase family signature 152 179 4.4E-48 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 PRINTS PR00474 Glutamate 5-kinase family signature 80 108 4.4E-48 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 PRINTS PR00474 Glutamate 5-kinase family signature 46 60 4.4E-48 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 PRINTS PR00474 Glutamate 5-kinase family signature 120 141 4.4E-48 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 Gene3D G3DSA:3.40.1160.10 10 259 2.9E-52 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 PIRSF PIRSF000729 3 370 5.9E-119 T 23-04-2016 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RD1_RS12240 da76ff0449199bc13b9637ca77b74de3 374 SUPERFAMILY SSF53633 10 259 2.62E-63 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RD1_RS14640 eb68864f6da687703ea775d838b282e0 512 PIRSF PIRSF037567 1 510 9.2E-132 T 23-04-2016 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250|UniPathway: UPA00645 RD1_RS14640 eb68864f6da687703ea775d838b282e0 512 Pfam PF06253 Trimethylamine methyltransferase (MTTB) 8 504 1.9E-143 T 23-04-2016 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250|UniPathway: UPA00645 RD1_RS13300 5e205281f7c3024d261a0f34702e6a45 325 PANTHER PTHR13812 67 323 8.8E-58 T 23-04-2016 RD1_RS13300 5e205281f7c3024d261a0f34702e6a45 325 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 12 316 4.5E-70 T 23-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin RD1_RS13300 5e205281f7c3024d261a0f34702e6a45 325 Gene3D G3DSA:3.30.1780.10 6 141 2.5E-37 T 23-04-2016 IPR023401 Ornithine cyclodeaminase, N-terminal RD1_RS13300 5e205281f7c3024d261a0f34702e6a45 325 PANTHER PTHR13812:SF19 67 323 8.8E-58 T 23-04-2016 RD1_RS13300 5e205281f7c3024d261a0f34702e6a45 325 PIRSF PIRSF001439 2 325 1.1E-88 T 23-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin RD1_RS13300 5e205281f7c3024d261a0f34702e6a45 325 SUPERFAMILY SSF51735 4 325 5.98E-87 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13300 5e205281f7c3024d261a0f34702e6a45 325 Gene3D G3DSA:3.40.50.720 142 298 7.3E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02070 ee83a5ef68938965d266245a243ddddb 196 SUPERFAMILY SSF160443 101 193 2.75E-15 T 23-04-2016 IPR002625 Smr domain RD1_RS02070 ee83a5ef68938965d266245a243ddddb 196 SMART SM00463 100 193 0.0049 T 23-04-2016 IPR002625 Smr domain RD1_RS02070 ee83a5ef68938965d266245a243ddddb 196 PANTHER PTHR35562:SF2 1 194 9.8E-24 T 23-04-2016 RD1_RS02070 ee83a5ef68938965d266245a243ddddb 196 PANTHER PTHR35562 1 194 9.8E-24 T 23-04-2016 RD1_RS02070 ee83a5ef68938965d266245a243ddddb 196 Pfam PF01713 Smr domain 103 193 5.6E-21 T 23-04-2016 IPR002625 Smr domain RD1_RS13870 0a8a483205454a1aa149f725c5066ed6 295 Pfam PF09931 Uncharacterized conserved protein (DUF2163) 1 163 2.5E-62 T 23-04-2016 IPR019228 Bacteriophage phiJL001, Gp84, N-terminal RD1_RS13870 0a8a483205454a1aa149f725c5066ed6 295 TIGRFAM TIGR02218 phg_TIGR02218: phage conserved hypothetical protein BR0599 23 294 2.1E-94 T 23-04-2016 IPR011928 Bacteriophage phiJL001, Gp84 RD1_RS13870 0a8a483205454a1aa149f725c5066ed6 295 Pfam PF09356 Phage conserved hypothetical protein BR0599 195 277 1.1E-30 T 23-04-2016 IPR018964 Bacteriophage phiJL001, Gp84, C-terminal RD1_RS11525 95c2122a5d007f8545a155cbd77e48b7 262 SUPERFAMILY SSF51197 74 231 7.14E-11 T 23-04-2016 RD1_RS11525 95c2122a5d007f8545a155cbd77e48b7 262 Gene3D G3DSA:2.60.120.620 140 232 1.1E-6 T 23-04-2016 RD1_RS19085 b6ebf280cbb9a2cf340aa602d3bd3d64 456 PANTHER PTHR30024 7 134 5.1E-125 T 23-04-2016 RD1_RS19085 b6ebf280cbb9a2cf340aa602d3bd3d64 456 PANTHER PTHR30024 160 428 5.1E-125 T 23-04-2016 RD1_RS19085 b6ebf280cbb9a2cf340aa602d3bd3d64 456 PANTHER PTHR30024:SF7 7 134 5.1E-125 T 23-04-2016 RD1_RS19085 b6ebf280cbb9a2cf340aa602d3bd3d64 456 PANTHER PTHR30024:SF7 160 428 5.1E-125 T 23-04-2016 RD1_RS19085 b6ebf280cbb9a2cf340aa602d3bd3d64 456 Pfam PF13379 NMT1-like family 27 303 2.5E-97 T 23-04-2016 RD1_RS19085 b6ebf280cbb9a2cf340aa602d3bd3d64 456 SUPERFAMILY SSF53850 134 326 8.96E-15 T 23-04-2016 RD1_RS19085 b6ebf280cbb9a2cf340aa602d3bd3d64 456 SUPERFAMILY SSF53850 31 94 8.96E-15 T 23-04-2016 RD1_RS00270 76a17ad028292286837a60042590cd25 1509 Gene3D G3DSA:3.60.20.10 33 456 4.0E-164 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS00270 76a17ad028292286837a60042590cd25 1509 Gene3D G3DSA:3.20.20.70 468 806 2.2E-86 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS00270 76a17ad028292286837a60042590cd25 1509 PANTHER PTHR11938 22 1500 0.0 T 23-04-2016 RD1_RS00270 76a17ad028292286837a60042590cd25 1509 PANTHER PTHR11938:SF1 22 1500 0.0 T 23-04-2016 RD1_RS00270 76a17ad028292286837a60042590cd25 1509 Pfam PF01493 GXGXG motif 1262 1444 4.0E-71 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS00270 76a17ad028292286837a60042590cd25 1509 Gene3D G3DSA:3.20.20.70 822 1219 2.7E-170 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS00270 76a17ad028292286837a60042590cd25 1509 SUPERFAMILY SSF56235 33 455 9.65E-147 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS00270 76a17ad028292286837a60042590cd25 1509 Pfam PF01645 Conserved region in glutamate synthase 819 1183 6.9E-153 T 23-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RD1_RS00270 76a17ad028292286837a60042590cd25 1509 Pfam PF00310 Glutamine amidotransferases class-II 33 453 6.9E-160 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain RD1_RS00270 76a17ad028292286837a60042590cd25 1509 SUPERFAMILY SSF69336 1235 1495 3.4E-86 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS00270 76a17ad028292286837a60042590cd25 1509 Pfam PF04898 Glutamate synthase central domain 481 759 1.3E-92 T 23-04-2016 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 UniPathway: UPA00045 RD1_RS00270 76a17ad028292286837a60042590cd25 1509 Gene3D G3DSA:2.160.20.60 1238 1491 4.3E-89 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS00270 76a17ad028292286837a60042590cd25 1509 SUPERFAMILY SSF51395 457 1218 1.42E-248 T 23-04-2016 RD1_RS19240 ca4fa2227ca56ec6c1d8a0986c92b9bb 337 Gene3D G3DSA:3.40.50.720 2 178 1.5E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19240 ca4fa2227ca56ec6c1d8a0986c92b9bb 337 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 322 1.4E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19240 ca4fa2227ca56ec6c1d8a0986c92b9bb 337 SUPERFAMILY SSF51735 2 333 5.67E-88 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19240 ca4fa2227ca56ec6c1d8a0986c92b9bb 337 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 332 1.1E-125 T 23-04-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|UniPathway: UPA00214 RD1_RS19240 ca4fa2227ca56ec6c1d8a0986c92b9bb 337 Gene3D G3DSA:3.90.25.10 179 335 2.3E-51 T 23-04-2016 RD1_RS19240 ca4fa2227ca56ec6c1d8a0986c92b9bb 337 PANTHER PTHR10366:SF308 2 336 4.2E-133 T 23-04-2016 RD1_RS19240 ca4fa2227ca56ec6c1d8a0986c92b9bb 337 PANTHER PTHR10366 2 336 4.2E-133 T 23-04-2016 RD1_RS11505 9ba094c3fd94a79b5bc52aaa8637ce4c 383 SUPERFAMILY SSF51905 195 322 9.58E-24 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS11505 9ba094c3fd94a79b5bc52aaa8637ce4c 383 SUPERFAMILY SSF51905 1 163 9.58E-24 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS11505 9ba094c3fd94a79b5bc52aaa8637ce4c 383 Gene3D G3DSA:3.50.50.60 2 102 2.2E-9 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS11505 9ba094c3fd94a79b5bc52aaa8637ce4c 383 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 95 113 6.4E-8 T 23-04-2016 RD1_RS11505 9ba094c3fd94a79b5bc52aaa8637ce4c 383 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 6.4E-8 T 23-04-2016 RD1_RS11505 9ba094c3fd94a79b5bc52aaa8637ce4c 383 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 6.4E-8 T 23-04-2016 RD1_RS11505 9ba094c3fd94a79b5bc52aaa8637ce4c 383 PANTHER PTHR22912 3 304 3.5E-18 T 23-04-2016 RD1_RS11505 9ba094c3fd94a79b5bc52aaa8637ce4c 383 PANTHER PTHR22912:SF180 3 304 3.5E-18 T 23-04-2016 RD1_RS11505 9ba094c3fd94a79b5bc52aaa8637ce4c 383 Gene3D G3DSA:3.50.50.60 103 305 1.9E-22 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS11505 9ba094c3fd94a79b5bc52aaa8637ce4c 383 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 298 1.7E-33 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS14935 a1122127956bc75b001f1983f97ad3e0 282 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 4 265 19.158 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RD1_RS14935 a1122127956bc75b001f1983f97ad3e0 282 PANTHER PTHR30371:SF0 4 282 1.3E-80 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RD1_RS14935 a1122127956bc75b001f1983f97ad3e0 282 Pfam PF00902 Sec-independent protein translocase protein (TatC) 16 245 5.9E-71 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RD1_RS14935 a1122127956bc75b001f1983f97ad3e0 282 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 14 251 1.3E-64 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RD1_RS14935 a1122127956bc75b001f1983f97ad3e0 282 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 93 111 3.2E-30 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RD1_RS14935 a1122127956bc75b001f1983f97ad3e0 282 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 111 137 3.2E-30 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RD1_RS14935 a1122127956bc75b001f1983f97ad3e0 282 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 13 40 3.2E-30 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RD1_RS14935 a1122127956bc75b001f1983f97ad3e0 282 PANTHER PTHR30371 4 282 1.3E-80 T 23-04-2016 RD1_RS07210 58b3d143e0f37e40f3b46ba97cb5fb18 456 Gene3D G3DSA:1.20.210.10 3 438 1.0E-18 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS07210 58b3d143e0f37e40f3b46ba97cb5fb18 456 PANTHER PTHR10422:SF24 8 443 3.4E-104 T 23-04-2016 RD1_RS07210 58b3d143e0f37e40f3b46ba97cb5fb18 456 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 8 423 3.6E-80 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS07210 58b3d143e0f37e40f3b46ba97cb5fb18 456 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 190 246 - T 23-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS07210 58b3d143e0f37e40f3b46ba97cb5fb18 456 PANTHER PTHR10422 8 443 3.4E-104 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS07210 58b3d143e0f37e40f3b46ba97cb5fb18 456 SUPERFAMILY SSF81442 3 439 6.15E-90 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS12695 b6e9d91e0bb29a9b52cef2e7ae186e09 221 PANTHER PTHR32125 3 219 2.9E-45 T 23-04-2016 RD1_RS12695 b6e9d91e0bb29a9b52cef2e7ae186e09 221 PANTHER PTHR32125:SF4 3 219 2.9E-45 T 23-04-2016 RD1_RS12695 b6e9d91e0bb29a9b52cef2e7ae186e09 221 Gene3D G3DSA:3.90.550.10 1 216 1.0E-58 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS12695 b6e9d91e0bb29a9b52cef2e7ae186e09 221 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 2 218 26.085 T 23-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS12695 b6e9d91e0bb29a9b52cef2e7ae186e09 221 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 4 216 6.9E-63 T 23-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS12695 b6e9d91e0bb29a9b52cef2e7ae186e09 221 SUPERFAMILY SSF53448 3 215 1.13E-49 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS12695 b6e9d91e0bb29a9b52cef2e7ae186e09 221 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 5 215 2.1E-59 T 23-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS12695 b6e9d91e0bb29a9b52cef2e7ae186e09 221 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 96 103 - T 23-04-2016 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS02990 552e698f45d50656c9d97a1b1ce56dfb 272 PIRSF PIRSF000161 3 271 1.5E-76 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS02990 552e698f45d50656c9d97a1b1ce56dfb 272 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 5 268 2.5E-78 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS02990 552e698f45d50656c9d97a1b1ce56dfb 272 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 5 128 6.0E-31 T 23-04-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS02990 552e698f45d50656c9d97a1b1ce56dfb 272 Gene3D G3DSA:3.30.360.10 135 236 1.1E-38 T 23-04-2016 RD1_RS02990 552e698f45d50656c9d97a1b1ce56dfb 272 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 131 267 6.8E-43 T 23-04-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS02990 552e698f45d50656c9d97a1b1ce56dfb 272 SUPERFAMILY SSF51735 4 129 3.38E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02990 552e698f45d50656c9d97a1b1ce56dfb 272 SUPERFAMILY SSF51735 239 270 3.38E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02990 552e698f45d50656c9d97a1b1ce56dfb 272 Gene3D G3DSA:3.40.50.720 5 134 1.9E-13 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02990 552e698f45d50656c9d97a1b1ce56dfb 272 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 153 170 - T 23-04-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS02990 552e698f45d50656c9d97a1b1ce56dfb 272 PANTHER PTHR20836 1 269 1.8E-75 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS02990 552e698f45d50656c9d97a1b1ce56dfb 272 SUPERFAMILY SSF55347 130 239 1.68E-35 T 23-04-2016 RD1_RS02990 552e698f45d50656c9d97a1b1ce56dfb 272 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 5 268 32.755 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS09190 66623cc94ec8de5833c9dc7846c786af 378 Gene3D G3DSA:3.30.1490.40 312 352 2.6E-4 T 23-04-2016 IPR003169 GYF domain GO:0005515 RD1_RS09190 66623cc94ec8de5833c9dc7846c786af 378 SUPERFAMILY SSF117892 112 231 6.02E-9 T 23-04-2016 IPR001107 Band 7 domain RD1_RS09190 66623cc94ec8de5833c9dc7846c786af 378 PANTHER PTHR37826:SF2 1 363 2.1E-100 T 23-04-2016 RD1_RS09190 66623cc94ec8de5833c9dc7846c786af 378 Pfam PF13421 SPFH domain-Band 7 family 26 236 1.9E-97 T 23-04-2016 RD1_RS09190 66623cc94ec8de5833c9dc7846c786af 378 PANTHER PTHR37826 1 363 2.1E-100 T 23-04-2016 RD1_RS09190 66623cc94ec8de5833c9dc7846c786af 378 Pfam PF14237 Domain of unknown function (DUF4339) 312 355 7.0E-15 T 23-04-2016 IPR025640 Domain of unknown function DUF4339 RD1_RS00540 26f1e5ed8a8db92069d56c5402acb41f 339 PANTHER PTHR31480 4 295 1.7E-63 T 23-04-2016 RD1_RS00540 26f1e5ed8a8db92069d56c5402acb41f 339 PANTHER PTHR31480:SF0 4 295 1.7E-63 T 23-04-2016 RD1_RS00540 26f1e5ed8a8db92069d56c5402acb41f 339 Gene3D G3DSA:1.10.600.10 5 285 9.8E-70 T 23-04-2016 IPR008949 Isoprenoid synthase domain RD1_RS00540 26f1e5ed8a8db92069d56c5402acb41f 339 SUPERFAMILY SSF48576 6 290 3.02E-76 T 23-04-2016 IPR008949 Isoprenoid synthase domain RD1_RS00540 26f1e5ed8a8db92069d56c5402acb41f 339 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 153 178 - T 23-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 RD1_RS00540 26f1e5ed8a8db92069d56c5402acb41f 339 ProSitePatterns PS01044 Squalene and phytoene synthases signature 1. 123 138 - T 23-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 RD1_RS00540 26f1e5ed8a8db92069d56c5402acb41f 339 Pfam PF00494 Squalene/phytoene synthase 14 267 2.0E-61 T 23-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 RD1_RS09545 f9c59063baf8fe150a98d4217a6694c3 260 SUPERFAMILY SSF53187 4 258 1.57E-45 T 23-04-2016 RD1_RS09545 f9c59063baf8fe150a98d4217a6694c3 260 Pfam PF05013 N-formylglutamate amidohydrolase 11 224 4.3E-36 T 23-04-2016 IPR007709 N-formylglutamate amidohydrolase RD1_RS09545 f9c59063baf8fe150a98d4217a6694c3 260 Gene3D G3DSA:3.40.630.40 7 258 1.2E-41 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RD1_RS01645 a97ad51c8634cb7afacd6af1c0352f55 191 Gene3D G3DSA:3.10.540.10 4 92 6.6E-39 T 23-04-2016 RD1_RS01645 a97ad51c8634cb7afacd6af1c0352f55 191 Gene3D G3DSA:2.20.70.10 164 191 1.2E-18 T 23-04-2016 RD1_RS01645 a97ad51c8634cb7afacd6af1c0352f55 191 Gene3D G3DSA:2.30.270.10 93 162 1.1E-26 T 23-04-2016 IPR023361 Protein of unknown function DUF1285, beta-roll domain RD1_RS01645 a97ad51c8634cb7afacd6af1c0352f55 191 Pfam PF06938 Protein of unknown function (DUF1285) 42 182 5.9E-54 T 23-04-2016 IPR010707 Protein of unknown function DUF1285 RD1_RS01645 a97ad51c8634cb7afacd6af1c0352f55 191 PIRSF PIRSF029557 2 191 2.9E-71 T 23-04-2016 IPR010707 Protein of unknown function DUF1285 RD1_RS03970 9e33ea6cf3f06b62896be33916e86e17 519 SUPERFAMILY SSF52540 15 235 1.02E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03970 9e33ea6cf3f06b62896be33916e86e17 519 SMART SM00382 41 236 5.3E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS03970 9e33ea6cf3f06b62896be33916e86e17 519 PANTHER PTHR24220 18 398 3.0E-133 T 23-04-2016 RD1_RS03970 9e33ea6cf3f06b62896be33916e86e17 519 ProSitePatterns PS00211 ABC transporters family signature. 416 430 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS03970 9e33ea6cf3f06b62896be33916e86e17 519 PANTHER PTHR24220:SF416 18 398 3.0E-133 T 23-04-2016 RD1_RS03970 9e33ea6cf3f06b62896be33916e86e17 519 Gene3D G3DSA:3.40.50.300 13 236 6.8E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03970 9e33ea6cf3f06b62896be33916e86e17 519 Gene3D G3DSA:3.40.50.300 281 512 3.0E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03970 9e33ea6cf3f06b62896be33916e86e17 519 SUPERFAMILY SSF52540 281 505 4.34E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03970 9e33ea6cf3f06b62896be33916e86e17 519 Pfam PF00005 ABC transporter 287 443 1.2E-16 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS03970 9e33ea6cf3f06b62896be33916e86e17 519 Pfam PF00005 ABC transporter 32 182 1.9E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS11090 4c07e197fb88145138cdc010d9fbbc24 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 262 1.6E-14 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11090 4c07e197fb88145138cdc010d9fbbc24 272 Gene3D G3DSA:1.10.3720.10 18 260 3.4E-42 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11090 4c07e197fb88145138cdc010d9fbbc24 272 PANTHER PTHR30193 18 263 3.4E-46 T 23-04-2016 RD1_RS11090 4c07e197fb88145138cdc010d9fbbc24 272 SUPERFAMILY SSF161098 14 261 5.89E-47 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11090 4c07e197fb88145138cdc010d9fbbc24 272 PANTHER PTHR30193:SF20 18 263 3.4E-46 T 23-04-2016 RD1_RS02200 68774411934ce2a2460fe266ccda38d4 275 SUPERFAMILY SSF47413 27 75 3.97E-5 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS02200 68774411934ce2a2460fe266ccda38d4 275 Gene3D G3DSA:1.10.260.40 30 75 2.1E-7 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 Gene3D G3DSA:3.30.9.10 89 141 1.2E-49 T 23-04-2016 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 Gene3D G3DSA:3.30.9.10 221 326 1.2E-49 T 23-04-2016 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 Gene3D G3DSA:3.30.70.1400 489 576 2.2E-10 T 23-04-2016 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 PANTHER PTHR13847 3 444 5.2E-110 T 23-04-2016 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 SUPERFAMILY SSF101790 724 810 3.92E-19 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 SUPERFAMILY SSF54373 222 326 2.67E-31 T 23-04-2016 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 Pfam PF01266 FAD dependent oxidoreductase 6 364 1.3E-50 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 Gene3D G3DSA:2.40.30.110 720 797 1.9E-17 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 Pfam PF16350 FAD dependent oxidoreductase central domain 368 421 3.6E-12 T 23-04-2016 IPR032503 FAD dependent oxidoreductase, central domain RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 708 798 7.9E-20 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 PANTHER PTHR13847:SF193 3 444 5.2E-110 T 23-04-2016 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 Pfam PF01571 Aminomethyltransferase folate-binding domain 427 699 1.0E-51 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 SUPERFAMILY SSF103025 417 721 2.83E-76 T 23-04-2016 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 Gene3D G3DSA:3.30.1360.120 420 488 2.7E-25 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 Gene3D G3DSA:3.30.1360.120 581 677 2.7E-25 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 SUPERFAMILY SSF51905 5 221 3.88E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 SUPERFAMILY SSF51905 327 387 3.88E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 Gene3D G3DSA:3.50.50.60 142 220 8.5E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 Gene3D G3DSA:3.50.50.60 2 82 8.5E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02790 0f113baf11d1c5bcf339469db17d3b88 811 Gene3D G3DSA:3.50.50.60 327 384 8.5E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS06050 e83e922ab5262daae1e0a94c0615cf2b 122 Pfam PF00886 Ribosomal protein S16 9 70 1.5E-28 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06050 e83e922ab5262daae1e0a94c0615cf2b 122 SUPERFAMILY SSF54565 3 86 2.35E-33 T 23-04-2016 IPR023803 Ribosomal protein S16 domain RD1_RS06050 e83e922ab5262daae1e0a94c0615cf2b 122 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 80 25.649 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06050 e83e922ab5262daae1e0a94c0615cf2b 122 PANTHER PTHR12919 2 82 9.0E-45 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06050 e83e922ab5262daae1e0a94c0615cf2b 122 Gene3D G3DSA:3.30.1320.10 3 82 1.6E-35 T 23-04-2016 IPR023803 Ribosomal protein S16 domain RD1_RS06050 e83e922ab5262daae1e0a94c0615cf2b 122 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 82 1.8E-33 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 Gene3D G3DSA:3.30.1360.40 240 336 1.7E-29 T 23-04-2016 IPR024946 Arginine repressor C-terminal-like domain RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 629 662 0.23 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 577 622 0.022 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 675 712 4.4E-7 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 PANTHER PTHR10169 16 419 9.1E-186 T 23-04-2016 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 PANTHER PTHR10169 440 506 9.1E-186 T 23-04-2016 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 PANTHER PTHR10169 529 637 9.1E-186 T 23-04-2016 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 SUPERFAMILY SSF101904 530 763 4.05E-52 T 23-04-2016 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 PANTHER PTHR10169:SF48 16 419 9.1E-186 T 23-04-2016 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 PANTHER PTHR10169:SF48 440 506 9.1E-186 T 23-04-2016 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 PANTHER PTHR10169:SF48 529 637 9.1E-186 T 23-04-2016 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 Gene3D G3DSA:1.10.268.10 367 485 1.1E-35 T 23-04-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 Gene3D G3DSA:3.90.199.10 37 219 8.7E-77 T 23-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 Gene3D G3DSA:2.120.10.90 528 713 3.2E-29 T 23-04-2016 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 SMART SM00434 14 489 7.6E-225 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 SUPERFAMILY SSF56719 34 506 2.75E-157 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 7 765 33.043 T 23-04-2016 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RD1_RS06440 e8d0950b1f3f379d2c1be525eeffe857 765 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 35 491 1.4E-140 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RD1_RS16320 9cca93568e0ccb25e34535844a49f629 95 PANTHER PTHR34702:SF1 1 95 4.3E-19 T 23-04-2016 RD1_RS16320 9cca93568e0ccb25e34535844a49f629 95 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 38 88 6.0E-20 T 23-04-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 RD1_RS16320 9cca93568e0ccb25e34535844a49f629 95 PANTHER PTHR34702 1 95 4.3E-19 T 23-04-2016 RD1_RS16320 9cca93568e0ccb25e34535844a49f629 95 PIRSF PIRSF028784 4 95 1.0E-26 T 23-04-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 RD1_RS08145 633e9c8d79877873e2e75027b299888b 413 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 2 119 6.1E-22 T 23-04-2016 IPR017560 Cytochrome c-type biogenesis protein CcmI RD1_RS08145 633e9c8d79877873e2e75027b299888b 413 Gene3D G3DSA:1.25.40.10 167 288 7.0E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS08145 633e9c8d79877873e2e75027b299888b 413 Gene3D G3DSA:1.25.40.10 363 404 7.0E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS08145 633e9c8d79877873e2e75027b299888b 413 SUPERFAMILY SSF48452 365 391 1.62E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS08145 633e9c8d79877873e2e75027b299888b 413 SUPERFAMILY SSF48452 159 290 1.62E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS11355 5d528060821cb1c78894c68d5869b819 445 PIRSF PIRSF006603 1 445 9.4E-97 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS11355 5d528060821cb1c78894c68d5869b819 445 TIGRFAM TIGR00797 matE: MATE efflux family protein 21 413 3.3E-56 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS11355 5d528060821cb1c78894c68d5869b819 445 Pfam PF01554 MatE 246 405 5.3E-24 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS11355 5d528060821cb1c78894c68d5869b819 445 Pfam PF01554 MatE 21 181 1.3E-20 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS11355 5d528060821cb1c78894c68d5869b819 445 PANTHER PTHR11206:SF132 3 440 7.8E-82 T 23-04-2016 RD1_RS11355 5d528060821cb1c78894c68d5869b819 445 PANTHER PTHR11206 3 440 7.8E-82 T 23-04-2016 RD1_RS05355 268635e3d394ed9c0c3606b69587c45a 323 Gene3D G3DSA:3.40.50.720 3 117 6.9E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05355 268635e3d394ed9c0c3606b69587c45a 323 PANTHER PTHR10996 3 322 7.3E-118 T 23-04-2016 RD1_RS05355 268635e3d394ed9c0c3606b69587c45a 323 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 151 179 - T 23-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RD1_RS05355 268635e3d394ed9c0c3606b69587c45a 323 Gene3D G3DSA:3.40.50.720 118 294 5.8E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05355 268635e3d394ed9c0c3606b69587c45a 323 SUPERFAMILY SSF51735 103 292 2.1E-57 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05355 268635e3d394ed9c0c3606b69587c45a 323 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 291 2.8E-57 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RD1_RS05355 268635e3d394ed9c0c3606b69587c45a 323 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 231 247 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RD1_RS05355 268635e3d394ed9c0c3606b69587c45a 323 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 17 322 7.4E-27 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 RD1_RS05355 268635e3d394ed9c0c3606b69587c45a 323 SUPERFAMILY SSF52283 3 137 4.16E-33 T 23-04-2016 RD1_RS05940 447063ac861bdd9c31ba5cddb0b31895 345 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 50 319 8.9E-50 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS05940 447063ac861bdd9c31ba5cddb0b31895 345 PANTHER PTHR33376 1 345 4.9E-58 T 23-04-2016 RD1_RS02850 8753c6cccf04e1dbf246ae88fdd6a17d 156 Gene3D G3DSA:3.40.1280.10 1 155 4.0E-49 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RD1_RS02850 8753c6cccf04e1dbf246ae88fdd6a17d 156 PANTHER PTHR33603:SF1 1 155 1.2E-41 T 23-04-2016 RD1_RS02850 8753c6cccf04e1dbf246ae88fdd6a17d 156 SUPERFAMILY SSF75217 1 153 3.73E-43 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases RD1_RS02850 8753c6cccf04e1dbf246ae88fdd6a17d 156 Pfam PF02590 Predicted SPOUT methyltransferase 1 154 2.4E-41 T 23-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS02850 8753c6cccf04e1dbf246ae88fdd6a17d 156 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 26.968 T 23-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS02850 8753c6cccf04e1dbf246ae88fdd6a17d 156 PIRSF PIRSF004505 1 155 1.4E-39 T 23-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS02850 8753c6cccf04e1dbf246ae88fdd6a17d 156 PANTHER PTHR33603 1 155 1.2E-41 T 23-04-2016 RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 SUPERFAMILY SSF52540 3 197 4.79E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 Gene3D G3DSA:2.40.30.10 206 303 2.1E-22 T 23-04-2016 RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 SMART SM00838 399 489 0.0024 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 PANTHER PTHR23115 2 594 4.9E-269 T 23-04-2016 RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 Gene3D G3DSA:3.40.50.300 3 205 1.6E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 SUPERFAMILY SSF50447 150 299 7.49E-27 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 Gene3D G3DSA:3.30.70.870 304 400 3.4E-30 T 23-04-2016 RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 Pfam PF00679 Elongation factor G C-terminus 398 479 5.2E-20 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 PRINTS PR00315 GTP-binding elongation factor signature 85 96 4.5E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 PRINTS PR00315 GTP-binding elongation factor signature 121 130 4.5E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 PRINTS PR00315 GTP-binding elongation factor signature 69 79 4.5E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 PRINTS PR00315 GTP-binding elongation factor signature 49 57 4.5E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 PRINTS PR00315 GTP-binding elongation factor signature 5 18 4.5E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 138 2.9E-26 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 Pfam PF03144 Elongation factor Tu domain 2 219 285 1.7E-9 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 3 600 6.7E-278 T 23-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 SUPERFAMILY SSF54980 399 513 1.15E-25 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 Gene3D G3DSA:2.40.50.250 484 578 3.2E-40 T 23-04-2016 RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 PANTHER PTHR23115:SF14 2 594 4.9E-269 T 23-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 Gene3D G3DSA:3.30.70.240 401 482 5.4E-29 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 SUPERFAMILY SSF54980 303 388 1.25E-11 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RD1_RS12440 0588d8613e3ca74d87e5abf0386af4f5 605 Pfam PF00009 Elongation factor Tu GTP binding domain 3 193 1.6E-54 T 23-04-2016 RD1_RS16140 00798867c4bed9185429412465a08bb1 137 PANTHER PTHR11527:SF145 13 123 1.6E-25 T 23-04-2016 RD1_RS16140 00798867c4bed9185429412465a08bb1 137 Gene3D G3DSA:2.60.40.790 23 135 4.1E-16 T 23-04-2016 IPR008978 HSP20-like chaperone RD1_RS16140 00798867c4bed9185429412465a08bb1 137 SUPERFAMILY SSF49764 31 134 6.28E-20 T 23-04-2016 IPR008978 HSP20-like chaperone RD1_RS16140 00798867c4bed9185429412465a08bb1 137 Pfam PF00011 Hsp20/alpha crystallin family 43 134 1.0E-16 T 23-04-2016 IPR002068 Alpha crystallin/Hsp20 domain RD1_RS16140 00798867c4bed9185429412465a08bb1 137 PANTHER PTHR11527 13 123 1.6E-25 T 23-04-2016 IPR031107 Small heat shock protein HSP20 RD1_RS14855 662414e249295f504334a26a714ad0e1 344 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 5 343 3.5E-127 T 23-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS14855 662414e249295f504334a26a714ad0e1 344 Gene3D G3DSA:3.20.20.140 2 343 6.5E-127 T 23-04-2016 RD1_RS14855 662414e249295f504334a26a714ad0e1 344 ProSitePatterns PS00482 Dihydroorotase signature 1. 12 20 - T 23-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS14855 662414e249295f504334a26a714ad0e1 344 SUPERFAMILY SSF51556 3 343 2.27E-138 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS14855 662414e249295f504334a26a714ad0e1 344 PIRSF PIRSF001237 1 344 1.9E-133 T 23-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS14855 662414e249295f504334a26a714ad0e1 344 PANTHER PTHR11647:SF59 1 316 9.3E-147 T 23-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS14855 662414e249295f504334a26a714ad0e1 344 Hamap MF_00219 Dihydroorotase [pyrC]. 3 344 42.225 T 23-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS14855 662414e249295f504334a26a714ad0e1 344 PANTHER PTHR11647 1 316 9.3E-147 T 23-04-2016 RD1_RS14855 662414e249295f504334a26a714ad0e1 344 ProSitePatterns PS00483 Dihydroorotase signature 2. 246 257 - T 23-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS14855 662414e249295f504334a26a714ad0e1 344 Pfam PF01979 Amidohydrolase family 12 303 1.8E-16 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RD1_RS09095 a2434768901c781b2f4d544f146f7242 160 Pfam PF10003 Integral membrane protein (DUF2244) 18 157 3.5E-38 T 23-04-2016 IPR019253 Protein of unknown function DUF2244, transmembrane RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 SUPERFAMILY SSF55785 847 950 6.55E-6 T 23-04-2016 IPR000014 PAS domain RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 Gene3D G3DSA:3.40.50.150 272 467 6.8E-57 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 Gene3D G3DSA:3.40.50.180 4 194 5.2E-62 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 SUPERFAMILY SSF55785 716 826 1.76E-5 T 23-04-2016 IPR000014 PAS domain RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 Gene3D G3DSA:3.40.50.300 565 702 0.001 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 SUPERFAMILY SSF52738 6 194 1.44E-55 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 PRINTS PR00996 Glutamate methyltransferase family signature 427 450 1.4E-27 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 PRINTS PR00996 Glutamate methyltransferase family signature 342 358 1.4E-27 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 PRINTS PR00996 Glutamate methyltransferase family signature 229 242 1.4E-27 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 PRINTS PR00996 Glutamate methyltransferase family signature 408 422 1.4E-27 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 PRINTS PR00996 Glutamate methyltransferase family signature 304 324 1.4E-27 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 PRINTS PR00996 Glutamate methyltransferase family signature 266 278 1.4E-27 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 SUPERFAMILY SSF53335 274 467 8.86E-43 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 Pfam PF01339 CheB methylesterase 11 186 4.2E-53 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 Gene3D G3DSA:3.30.450.20 703 824 2.7E-4 T 23-04-2016 RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 Pfam PF03705 CheR methyltransferase, all-alpha domain 213 260 1.6E-11 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 Pfam PF08447 PAS fold 986 1072 1.7E-15 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 SUPERFAMILY SSF55785 948 1074 2.79E-14 T 23-04-2016 IPR000014 PAS domain RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 PANTHER PTHR24422:SF6 102 760 2.9E-143 T 23-04-2016 RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 SUPERFAMILY SSF47757 213 275 5.89E-12 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 Gene3D G3DSA:1.10.155.10 212 270 1.0E-13 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 Pfam PF01739 CheR methyltransferase, SAM binding domain 274 458 5.5E-52 T 23-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 SMART SM00091 963 1031 3.8 T 23-04-2016 IPR000014 PAS domain RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 SMART SM00091 835 901 1.2 T 23-04-2016 IPR000014 PAS domain RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 SMART SM00091 725 790 16.0 T 23-04-2016 IPR000014 PAS domain RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 Pfam PF13426 PAS domain 853 924 0.11 T 23-04-2016 IPR000014 PAS domain RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 SMART SM00138 211 468 1.1E-67 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 Gene3D G3DSA:3.30.450.20 852 960 1.0E-5 T 23-04-2016 RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 PANTHER PTHR24422 102 760 2.9E-143 T 23-04-2016 RD1_RS14280 41d61492fc920834e8bf7aa13ab42b6b 1084 Gene3D G3DSA:3.30.450.20 961 1074 9.2E-21 T 23-04-2016 RD1_RS14745 4e4dc9c28e6ec70ac4058a48b6f11313 270 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 4 262 35.644 T 23-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 RD1_RS14745 4e4dc9c28e6ec70ac4058a48b6f11313 270 Gene3D G3DSA:3.20.20.70 3 262 4.9E-99 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS14745 4e4dc9c28e6ec70ac4058a48b6f11313 270 PANTHER PTHR22854 2 262 1.1E-100 T 23-04-2016 RD1_RS14745 4e4dc9c28e6ec70ac4058a48b6f11313 270 PANTHER PTHR22854:SF2 2 262 1.1E-100 T 23-04-2016 RD1_RS14745 4e4dc9c28e6ec70ac4058a48b6f11313 270 Pfam PF00218 Indole-3-glycerol phosphate synthase 6 260 1.0E-94 T 23-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 RD1_RS14745 4e4dc9c28e6ec70ac4058a48b6f11313 270 SUPERFAMILY SSF51366 13 262 6.71E-86 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RD1_RS14745 4e4dc9c28e6ec70ac4058a48b6f11313 270 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 23-04-2016 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 RD1_RS11495 4943774271f78d8577541583f4757752 315 PANTHER PTHR30212 1 261 1.9E-47 T 23-04-2016 RD1_RS11495 4943774271f78d8577541583f4757752 315 Gene3D G3DSA:2.30.110.10 161 256 1.0E-12 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS11495 4943774271f78d8577541583f4757752 315 SUPERFAMILY SSF50475 162 254 1.12E-6 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS11495 4943774271f78d8577541583f4757752 315 PANTHER PTHR30212:SF3 1 261 1.9E-47 T 23-04-2016 RD1_RS11495 4943774271f78d8577541583f4757752 315 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 163 250 4.1E-12 T 23-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RD1_RS03140 b9c2af5020e617283270edf95213f42b 323 PANTHER PTHR10366 3 319 7.3E-64 T 23-04-2016 RD1_RS03140 b9c2af5020e617283270edf95213f42b 323 Gene3D G3DSA:3.90.25.10 192 302 7.0E-37 T 23-04-2016 RD1_RS03140 b9c2af5020e617283270edf95213f42b 323 Gene3D G3DSA:3.40.50.720 3 191 7.5E-27 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03140 b9c2af5020e617283270edf95213f42b 323 PANTHER PTHR10366:SF228 3 319 7.3E-64 T 23-04-2016 RD1_RS03140 b9c2af5020e617283270edf95213f42b 323 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 207 1.5E-17 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RD1_RS03140 b9c2af5020e617283270edf95213f42b 323 SUPERFAMILY SSF51735 1 320 1.42E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 Gene3D G3DSA:3.30.565.10 412 593 5.5E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 346 408 3.0E-16 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 456 593 2.0E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 SMART SM00073 8 105 2.0E-29 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 SUPERFAMILY SSF55874 412 592 1.07E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 Gene3D G3DSA:2.30.30.40 594 615 1.1E-17 T 23-04-2016 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 Gene3D G3DSA:2.30.30.40 682 727 1.1E-17 T 23-04-2016 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 SUPERFAMILY SSF47226 8 132 1.13E-27 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 Pfam PF01584 CheW-like domain 599 728 4.6E-19 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 SMART SM00260 586 727 4.3E-29 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 SMART SM00387 453 594 7.9E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 SMART SM01231 345 408 1.3E-17 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 PANTHER PTHR22617:SF20 176 743 7.6E-179 T 23-04-2016 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 PANTHER PTHR22617:SF20 8 155 7.6E-179 T 23-04-2016 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 PANTHER PTHR22617 176 743 7.6E-179 T 23-04-2016 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 PANTHER PTHR22617 8 155 7.6E-179 T 23-04-2016 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 Gene3D G3DSA:1.10.287.560 346 409 3.7E-19 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 SUPERFAMILY SSF47384 346 409 3.22E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 Pfam PF01627 Hpt domain 10 96 6.1E-17 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 Gene3D G3DSA:2.40.50.180 618 681 7.7E-4 T 23-04-2016 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 PRINTS PR00344 Bacterial sensor protein C-terminal signature 498 512 1.44E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 PRINTS PR00344 Bacterial sensor protein C-terminal signature 538 548 1.44E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 PRINTS PR00344 Bacterial sensor protein C-terminal signature 578 591 1.44E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 PRINTS PR00344 Bacterial sensor protein C-terminal signature 554 572 1.44E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 Gene3D G3DSA:1.20.120.160 6 140 5.7E-35 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RD1_RS14065 1e52598acbfdc3dd13a8d0775e6b7966 747 SUPERFAMILY SSF50341 593 727 9.16E-25 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RD1_RS09565 502eaa723809d1aa0fdb841dc0e7a263 411 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 138 235 9.4E-19 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RD1_RS09565 502eaa723809d1aa0fdb841dc0e7a263 411 Gene3D G3DSA:1.20.140.10 243 408 4.7E-45 T 23-04-2016 RD1_RS09565 502eaa723809d1aa0fdb841dc0e7a263 411 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 252 401 9.0E-33 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS09565 502eaa723809d1aa0fdb841dc0e7a263 411 PANTHER PTHR10909 1 410 4.2E-193 T 23-04-2016 RD1_RS09565 502eaa723809d1aa0fdb841dc0e7a263 411 SUPERFAMILY SSF47203 250 406 6.12E-44 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS09565 502eaa723809d1aa0fdb841dc0e7a263 411 SUPERFAMILY SSF56645 3 265 3.14E-62 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RD1_RS09565 502eaa723809d1aa0fdb841dc0e7a263 411 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 134 2.1E-13 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS09565 502eaa723809d1aa0fdb841dc0e7a263 411 Gene3D G3DSA:2.40.110.10 137 242 6.6E-38 T 23-04-2016 RD1_RS09565 502eaa723809d1aa0fdb841dc0e7a263 411 PANTHER PTHR10909:SF282 1 410 4.2E-193 T 23-04-2016 RD1_RS09565 502eaa723809d1aa0fdb841dc0e7a263 411 Gene3D G3DSA:1.10.540.10 3 136 8.3E-30 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS09585 e3852a7cab366b3f8dac6871a0044a63 260 SUPERFAMILY SSF55120 1 254 6.47E-78 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS09585 e3852a7cab366b3f8dac6871a0044a63 260 PIRSF PIRSF001430 1 259 2.7E-71 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS09585 e3852a7cab366b3f8dac6871a0044a63 260 PANTHER PTHR11142 1 250 1.5E-81 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS09585 e3852a7cab366b3f8dac6871a0044a63 260 Gene3D G3DSA:3.30.70.660 108 247 1.6E-43 T 23-04-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS09585 e3852a7cab366b3f8dac6871a0044a63 260 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 4 244 3.3E-52 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS09585 e3852a7cab366b3f8dac6871a0044a63 260 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 249 31.671 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS09585 e3852a7cab366b3f8dac6871a0044a63 260 Gene3D G3DSA:3.30.70.580 1 106 4.4E-34 T 23-04-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS09585 e3852a7cab366b3f8dac6871a0044a63 260 Pfam PF01416 tRNA pseudouridine synthase 9 105 2.9E-8 T 23-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS09585 e3852a7cab366b3f8dac6871a0044a63 260 Pfam PF01416 tRNA pseudouridine synthase 144 250 8.8E-30 T 23-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS04115 45e4a4b26f8b9f020b3fb332c31ec7c6 302 PANTHER PTHR13833 67 286 4.3E-26 T 23-04-2016 RD1_RS04115 45e4a4b26f8b9f020b3fb332c31ec7c6 302 SUPERFAMILY SSF51004 9 291 8.11E-62 T 23-04-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain RD1_RS04115 45e4a4b26f8b9f020b3fb332c31ec7c6 302 Gene3D G3DSA:2.130.10.10 13 291 4.1E-56 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RD1_RS04115 45e4a4b26f8b9f020b3fb332c31ec7c6 302 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 176 213 1.8E-12 T 23-04-2016 IPR011964 YVTN beta-propeller repeat RD1_RS04115 45e4a4b26f8b9f020b3fb332c31ec7c6 302 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 217 251 4.5E-9 T 23-04-2016 IPR011964 YVTN beta-propeller repeat RD1_RS04115 45e4a4b26f8b9f020b3fb332c31ec7c6 302 Pfam PF02239 Cytochrome D1 heme domain 185 287 1.9E-6 T 23-04-2016 RD1_RS16940 389e8638ff8e0f51d516aa4d2af7c905 195 SUPERFAMILY SSF46626 19 101 2.24E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS16940 389e8638ff8e0f51d516aa4d2af7c905 195 Gene3D G3DSA:1.10.760.10 25 101 1.9E-20 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS16940 389e8638ff8e0f51d516aa4d2af7c905 195 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 119 182 1.9E-6 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS16940 389e8638ff8e0f51d516aa4d2af7c905 195 SUPERFAMILY SSF46626 118 184 3.55E-18 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS16940 389e8638ff8e0f51d516aa4d2af7c905 195 PANTHER PTHR33751 24 193 6.5E-31 T 23-04-2016 RD1_RS16940 389e8638ff8e0f51d516aa4d2af7c905 195 Gene3D G3DSA:1.10.760.10 118 185 8.8E-22 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS16940 389e8638ff8e0f51d516aa4d2af7c905 195 PANTHER PTHR33751:SF3 24 193 6.5E-31 T 23-04-2016 RD1_RS09665 5a0a20422a28b93ea56c837bab49ccf8 168 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 4.0E-42 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RD1_RS09665 5a0a20422a28b93ea56c837bab49ccf8 168 SUPERFAMILY SSF53098 3 155 4.05E-48 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS09665 5a0a20422a28b93ea56c837bab49ccf8 168 PANTHER PTHR30194 1 153 2.1E-55 T 23-04-2016 RD1_RS09665 5a0a20422a28b93ea56c837bab49ccf8 168 Gene3D G3DSA:3.30.420.10 3 154 4.4E-56 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS09665 5a0a20422a28b93ea56c837bab49ccf8 168 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 153 1.0E-39 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RD1_RS09665 5a0a20422a28b93ea56c837bab49ccf8 168 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 23-04-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 RD1_RS09665 5a0a20422a28b93ea56c837bab49ccf8 168 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 45.093 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RD1_RS09665 5a0a20422a28b93ea56c837bab49ccf8 168 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 1.1E-31 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RD1_RS09665 5a0a20422a28b93ea56c837bab49ccf8 168 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 1.1E-31 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RD1_RS09665 5a0a20422a28b93ea56c837bab49ccf8 168 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 1.1E-31 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RD1_RS09665 5a0a20422a28b93ea56c837bab49ccf8 168 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 1.1E-31 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RD1_RS09665 5a0a20422a28b93ea56c837bab49ccf8 168 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 1.1E-31 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RD1_RS14715 8fce1294ff1bb186d4b99fbf8167e984 345 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 46 315 3.3E-53 T 23-04-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 RD1_RS14715 8fce1294ff1bb186d4b99fbf8167e984 345 Gene3D G3DSA:3.40.630.10 39 228 3.4E-24 T 23-04-2016 RD1_RS14715 8fce1294ff1bb186d4b99fbf8167e984 345 PIRSF PIRSF039012 1 322 8.7E-82 T 23-04-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 RD1_RS14715 8fce1294ff1bb186d4b99fbf8167e984 345 PANTHER PTHR37326:SF1 1 333 1.4E-93 T 23-04-2016 RD1_RS14715 8fce1294ff1bb186d4b99fbf8167e984 345 SUPERFAMILY SSF53187 21 316 1.12E-74 T 23-04-2016 RD1_RS14715 8fce1294ff1bb186d4b99fbf8167e984 345 PANTHER PTHR37326 1 333 1.4E-93 T 23-04-2016 RD1_RS10345 a0d1d66fee09c6608f533d3b7374b372 382 PANTHER PTHR10909 1 379 3.0E-174 T 23-04-2016 RD1_RS10345 a0d1d66fee09c6608f533d3b7374b372 382 SUPERFAMILY SSF47203 225 378 1.61E-53 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS10345 a0d1d66fee09c6608f533d3b7374b372 382 SUPERFAMILY SSF56645 1 240 9.42E-79 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RD1_RS10345 a0d1d66fee09c6608f533d3b7374b372 382 Gene3D G3DSA:1.20.140.10 216 381 1.1E-64 T 23-04-2016 RD1_RS10345 a0d1d66fee09c6608f533d3b7374b372 382 PANTHER PTHR10909:SF145 1 379 3.0E-174 T 23-04-2016 RD1_RS10345 a0d1d66fee09c6608f533d3b7374b372 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 335 354 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RD1_RS10345 a0d1d66fee09c6608f533d3b7374b372 382 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RD1_RS10345 a0d1d66fee09c6608f533d3b7374b372 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 376 1.3E-45 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS10345 a0d1d66fee09c6608f533d3b7374b372 382 Gene3D G3DSA:2.40.110.10 121 215 1.0E-37 T 23-04-2016 RD1_RS10345 a0d1d66fee09c6608f533d3b7374b372 382 Gene3D G3DSA:1.10.540.10 1 118 8.5E-39 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS10345 a0d1d66fee09c6608f533d3b7374b372 382 PIRSF PIRSF016578 6 380 1.6E-19 T 23-04-2016 RD1_RS10345 a0d1d66fee09c6608f533d3b7374b372 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 2.8E-30 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS10345 a0d1d66fee09c6608f533d3b7374b372 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 215 7.8E-25 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RD1_RS10645 ec95a5515e256582696dc37437c11322 384 SUPERFAMILY SSF51679 28 359 6.54E-74 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RD1_RS10645 ec95a5515e256582696dc37437c11322 384 Gene3D G3DSA:3.20.20.30 17 358 9.1E-75 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RD1_RS10645 ec95a5515e256582696dc37437c11322 384 Pfam PF00296 Luciferase-like monooxygenase 39 332 3.7E-56 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RD1_RS10645 ec95a5515e256582696dc37437c11322 384 PANTHER PTHR30011:SF1 1 358 7.9E-56 T 23-04-2016 RD1_RS10645 ec95a5515e256582696dc37437c11322 384 PANTHER PTHR30011 1 358 7.9E-56 T 23-04-2016 RD1_RS09720 194c3d873173b3d860b5eb234da0b4fd 414 Pfam PF01171 PP-loop family 21 198 1.4E-46 T 23-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal RD1_RS09720 194c3d873173b3d860b5eb234da0b4fd 414 SUPERFAMILY SSF52402 20 200 9.54E-49 T 23-04-2016 RD1_RS09720 194c3d873173b3d860b5eb234da0b4fd 414 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 4 306 19.815 T 23-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RD1_RS09720 194c3d873173b3d860b5eb234da0b4fd 414 PANTHER PTHR11807 20 292 1.6E-54 T 23-04-2016 RD1_RS09720 194c3d873173b3d860b5eb234da0b4fd 414 Gene3D G3DSA:3.40.50.620 18 185 2.5E-15 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS09720 194c3d873173b3d860b5eb234da0b4fd 414 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 21 200 8.0E-47 T 23-04-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RD1_RS09720 194c3d873173b3d860b5eb234da0b4fd 414 PANTHER PTHR11807:SF2 20 292 1.6E-54 T 23-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RD1_RS14305 c569f137cdede0f881435d08be7e7050 620 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS14305 c569f137cdede0f881435d08be7e7050 620 ProSitePatterns PS00211 ABC transporters family signature. 428 442 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS14305 c569f137cdede0f881435d08be7e7050 620 Gene3D G3DSA:3.40.50.300 1 261 5.4E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14305 c569f137cdede0f881435d08be7e7050 620 Gene3D G3DSA:3.40.50.300 307 515 6.6E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14305 c569f137cdede0f881435d08be7e7050 620 SMART SM00382 334 501 1.4E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS14305 c569f137cdede0f881435d08be7e7050 620 SMART SM00382 26 221 1.1E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS14305 c569f137cdede0f881435d08be7e7050 620 Pfam PF12848 ABC transporter 214 295 8.6E-25 T 23-04-2016 IPR032781 ABC-transporter extension domain RD1_RS14305 c569f137cdede0f881435d08be7e7050 620 PANTHER PTHR19211 1 513 2.5E-234 T 23-04-2016 RD1_RS14305 c569f137cdede0f881435d08be7e7050 620 PANTHER PTHR19211 562 603 2.5E-234 T 23-04-2016 RD1_RS14305 c569f137cdede0f881435d08be7e7050 620 Pfam PF00005 ABC transporter 21 175 1.5E-21 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS14305 c569f137cdede0f881435d08be7e7050 620 Pfam PF00005 ABC transporter 325 456 2.9E-17 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS14305 c569f137cdede0f881435d08be7e7050 620 SUPERFAMILY SSF52540 293 510 1.15E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14305 c569f137cdede0f881435d08be7e7050 620 SUPERFAMILY SSF52540 2 81 4.38E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14305 c569f137cdede0f881435d08be7e7050 620 SUPERFAMILY SSF52540 116 247 4.38E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11995 bb863b0726fa8dfeaf27e33b4de7e568 465 SMART SM00283 29 290 3.3E-5 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RD1_RS11995 bb863b0726fa8dfeaf27e33b4de7e568 465 PANTHER PTHR32089 317 335 1.2E-19 T 23-04-2016 RD1_RS11995 bb863b0726fa8dfeaf27e33b4de7e568 465 PANTHER PTHR32089 23 260 1.2E-19 T 23-04-2016 RD1_RS11995 bb863b0726fa8dfeaf27e33b4de7e568 465 Gene3D G3DSA:1.10.287.950 45 260 3.5E-32 T 23-04-2016 RD1_RS11995 bb863b0726fa8dfeaf27e33b4de7e568 465 SUPERFAMILY SSF58104 9 290 4.84E-36 T 23-04-2016 RD1_RS11995 bb863b0726fa8dfeaf27e33b4de7e568 465 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 128 286 3.3E-20 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RD1_RS11995 bb863b0726fa8dfeaf27e33b4de7e568 465 PANTHER PTHR32089:SF53 317 335 1.2E-19 T 23-04-2016 RD1_RS11995 bb863b0726fa8dfeaf27e33b4de7e568 465 PANTHER PTHR32089:SF53 23 260 1.2E-19 T 23-04-2016 RD1_RS17450 2dc672406217007fbde071bd77722ec0 134 Pfam PF00582 Universal stress protein family 1 134 1.8E-25 T 23-04-2016 IPR006016 UspA GO:0006950 RD1_RS17450 2dc672406217007fbde071bd77722ec0 134 SUPERFAMILY SSF52402 1 134 2.0E-23 T 23-04-2016 RD1_RS17450 2dc672406217007fbde071bd77722ec0 134 PANTHER PTHR31964 1 134 4.4E-18 T 23-04-2016 RD1_RS17450 2dc672406217007fbde071bd77722ec0 134 PANTHER PTHR31964:SF26 1 134 4.4E-18 T 23-04-2016 RD1_RS17450 2dc672406217007fbde071bd77722ec0 134 PRINTS PR01438 Universal stress protein signature 112 134 1.8E-8 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS17450 2dc672406217007fbde071bd77722ec0 134 PRINTS PR01438 Universal stress protein signature 95 107 1.8E-8 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS17450 2dc672406217007fbde071bd77722ec0 134 Gene3D G3DSA:3.40.50.620 1 134 6.9E-24 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS12640 5d6f0b48e19c7d4153c8eecbea0e41fb 432 PIRSF PIRSF006809 11 432 5.9E-134 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 RD1_RS12640 5d6f0b48e19c7d4153c8eecbea0e41fb 432 Pfam PF01926 50S ribosome-binding GTPase 214 333 5.6E-19 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS12640 5d6f0b48e19c7d4153c8eecbea0e41fb 432 Pfam PF16360 GTP-binding GTPase Middle Region 127 206 6.7E-27 T 23-04-2016 IPR032305 GTP-binding protein, middle domain RD1_RS12640 5d6f0b48e19c7d4153c8eecbea0e41fb 432 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 214 234 4.2E-6 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS12640 5d6f0b48e19c7d4153c8eecbea0e41fb 432 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 281 299 4.2E-6 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS12640 5d6f0b48e19c7d4153c8eecbea0e41fb 432 SUPERFAMILY SSF52540 212 380 2.33E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12640 5d6f0b48e19c7d4153c8eecbea0e41fb 432 Gene3D G3DSA:3.40.50.300 214 378 1.6E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12640 5d6f0b48e19c7d4153c8eecbea0e41fb 432 PANTHER PTHR10229 18 427 3.5E-157 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 RD1_RS12640 5d6f0b48e19c7d4153c8eecbea0e41fb 432 Pfam PF13167 GTP-binding GTPase N-terminal 37 124 2.5E-22 T 23-04-2016 IPR025121 GTPase HflX, N-terminal RD1_RS12640 5d6f0b48e19c7d4153c8eecbea0e41fb 432 PANTHER PTHR10229:SF0 18 427 3.5E-157 T 23-04-2016 RD1_RS12640 5d6f0b48e19c7d4153c8eecbea0e41fb 432 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 28 377 7.7E-129 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 RD1_RS12640 5d6f0b48e19c7d4153c8eecbea0e41fb 432 Hamap MF_00900 GTPase HflX [hflX]. 39 406 43.717 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 RD1_RS17785 51d3ee4832f2a9d1c45d2a1571bfd55d 373 SUPERFAMILY SSF50331 249 370 2.92E-21 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS17785 51d3ee4832f2a9d1c45d2a1571bfd55d 373 SUPERFAMILY SSF52540 17 255 2.34E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17785 51d3ee4832f2a9d1c45d2a1571bfd55d 373 Pfam PF08402 TOBE domain 287 362 2.2E-9 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS17785 51d3ee4832f2a9d1c45d2a1571bfd55d 373 Pfam PF00005 ABC transporter 32 174 6.4E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS17785 51d3ee4832f2a9d1c45d2a1571bfd55d 373 PANTHER PTHR24220 18 322 9.0E-118 T 23-04-2016 RD1_RS17785 51d3ee4832f2a9d1c45d2a1571bfd55d 373 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS17785 51d3ee4832f2a9d1c45d2a1571bfd55d 373 SMART SM00382 41 224 3.4E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS17785 51d3ee4832f2a9d1c45d2a1571bfd55d 373 Gene3D G3DSA:3.40.50.300 17 246 1.0E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17785 51d3ee4832f2a9d1c45d2a1571bfd55d 373 PANTHER PTHR24220:SF151 18 322 9.0E-118 T 23-04-2016 RD1_RS17785 51d3ee4832f2a9d1c45d2a1571bfd55d 373 Gene3D G3DSA:2.40.50.140 290 355 2.2E-7 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS13270 166f0d3b861dbeb51d89e04dfd2fb17e 383 Pfam PF00465 Iron-containing alcohol dehydrogenase 12 375 2.9E-87 T 23-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 RD1_RS13270 166f0d3b861dbeb51d89e04dfd2fb17e 383 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 23-04-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RD1_RS13270 166f0d3b861dbeb51d89e04dfd2fb17e 383 Gene3D G3DSA:3.40.50.1970 5 185 1.4E-42 T 23-04-2016 RD1_RS13270 166f0d3b861dbeb51d89e04dfd2fb17e 383 PANTHER PTHR11496:SF68 66 382 1.2E-64 T 23-04-2016 RD1_RS13270 166f0d3b861dbeb51d89e04dfd2fb17e 383 Gene3D G3DSA:1.20.1090.10 186 382 2.1E-36 T 23-04-2016 RD1_RS13270 166f0d3b861dbeb51d89e04dfd2fb17e 383 SUPERFAMILY SSF56796 5 381 5.5E-83 T 23-04-2016 RD1_RS13270 166f0d3b861dbeb51d89e04dfd2fb17e 383 PANTHER PTHR11496 66 382 1.2E-64 T 23-04-2016 RD1_RS16315 c087cea1bbc354068f723270af57b0ac 129 Pfam PF03334 Na+/H+ antiporter subunit 14 92 8.2E-23 T 23-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 RD1_RS16315 c087cea1bbc354068f723270af57b0ac 129 PANTHER PTHR34703 3 128 2.0E-22 T 23-04-2016 RD1_RS16315 c087cea1bbc354068f723270af57b0ac 129 PANTHER PTHR34703:SF1 3 128 2.0E-22 T 23-04-2016 RD1_RS16315 c087cea1bbc354068f723270af57b0ac 129 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 14 94 1.2E-19 T 23-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 RD1_RS16690 dd68f5cfd5155ae4116e6cd3c6697f42 276 PANTHER PTHR19288:SF3 2 273 1.7E-57 T 23-04-2016 RD1_RS16690 dd68f5cfd5155ae4116e6cd3c6697f42 276 TIGRFAM TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family 6 242 5.1E-70 T 23-04-2016 IPR006356 HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 RD1_RS16690 dd68f5cfd5155ae4116e6cd3c6697f42 276 Gene3D G3DSA:3.40.50.1000 4 79 2.7E-28 T 23-04-2016 IPR023214 HAD-like domain RD1_RS16690 dd68f5cfd5155ae4116e6cd3c6697f42 276 Gene3D G3DSA:3.40.50.1000 194 271 2.7E-28 T 23-04-2016 IPR023214 HAD-like domain RD1_RS16690 dd68f5cfd5155ae4116e6cd3c6697f42 276 SUPERFAMILY SSF56784 11 271 9.47E-44 T 23-04-2016 IPR023214 HAD-like domain RD1_RS16690 dd68f5cfd5155ae4116e6cd3c6697f42 276 PANTHER PTHR19288 2 273 1.7E-57 T 23-04-2016 RD1_RS16690 dd68f5cfd5155ae4116e6cd3c6697f42 276 Pfam PF13242 HAD-hyrolase-like 196 265 4.6E-16 T 23-04-2016 RD1_RS16690 dd68f5cfd5155ae4116e6cd3c6697f42 276 Pfam PF13344 Haloacid dehalogenase-like hydrolase 15 91 4.3E-12 T 23-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA RD1_RS16690 dd68f5cfd5155ae4116e6cd3c6697f42 276 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 196 235 1.2E-5 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS04405 afb958340ac657bd9bac414a61e398eb 301 PANTHER PTHR30537:SF5 1 300 2.8E-115 T 23-04-2016 RD1_RS04405 afb958340ac657bd9bac414a61e398eb 301 PANTHER PTHR30537 1 300 2.8E-115 T 23-04-2016 RD1_RS04405 afb958340ac657bd9bac414a61e398eb 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.1E-5 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS04405 afb958340ac657bd9bac414a61e398eb 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.1E-5 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS04405 afb958340ac657bd9bac414a61e398eb 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.1E-5 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS04405 afb958340ac657bd9bac414a61e398eb 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.2E-19 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS04405 afb958340ac657bd9bac414a61e398eb 301 Gene3D G3DSA:1.10.10.10 3 87 1.2E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04405 afb958340ac657bd9bac414a61e398eb 301 Pfam PF03466 LysR substrate binding domain 89 293 1.4E-42 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS04405 afb958340ac657bd9bac414a61e398eb 301 Gene3D G3DSA:3.40.190.10 92 178 8.6E-24 T 23-04-2016 RD1_RS04405 afb958340ac657bd9bac414a61e398eb 301 SUPERFAMILY SSF53850 90 296 1.86E-43 T 23-04-2016 RD1_RS04405 afb958340ac657bd9bac414a61e398eb 301 SUPERFAMILY SSF46785 4 87 2.47E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04405 afb958340ac657bd9bac414a61e398eb 301 Gene3D G3DSA:3.40.190.10 179 253 6.1E-17 T 23-04-2016 RD1_RS17940 d90467428cabbaa345889568ea6db4ec 298 Pfam PF00571 CBS domain 74 126 0.001 T 23-04-2016 IPR000644 CBS domain RD1_RS17940 d90467428cabbaa345889568ea6db4ec 298 Pfam PF00571 CBS domain 143 191 4.9E-8 T 23-04-2016 IPR000644 CBS domain RD1_RS17940 d90467428cabbaa345889568ea6db4ec 298 SMART SM00116 81 130 1.9 T 23-04-2016 IPR000644 CBS domain RD1_RS17940 d90467428cabbaa345889568ea6db4ec 298 SMART SM00116 146 194 0.094 T 23-04-2016 IPR000644 CBS domain RD1_RS17940 d90467428cabbaa345889568ea6db4ec 298 PANTHER PTHR22777 63 292 7.5E-69 T 23-04-2016 RD1_RS17940 d90467428cabbaa345889568ea6db4ec 298 Gene3D G3DSA:3.10.580.10 61 188 1.6E-16 T 23-04-2016 RD1_RS17940 d90467428cabbaa345889568ea6db4ec 298 Pfam PF03471 Transporter associated domain 211 293 8.6E-16 T 23-04-2016 IPR005170 Transporter-associated domain RD1_RS17940 d90467428cabbaa345889568ea6db4ec 298 SUPERFAMILY SSF54631 68 210 1.39E-30 T 23-04-2016 RD1_RS17940 d90467428cabbaa345889568ea6db4ec 298 SMART SM01091 210 295 3.3E-23 T 23-04-2016 IPR005170 Transporter-associated domain RD1_RS17940 d90467428cabbaa345889568ea6db4ec 298 Gene3D G3DSA:3.30.465.10 189 293 7.2E-23 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RD1_RS17940 d90467428cabbaa345889568ea6db4ec 298 SUPERFAMILY SSF56176 210 294 1.58E-16 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RD1_RS08730 82029f9dc2dca5fe94a07acb2f983458 601 Gene3D G3DSA:3.40.50.1820 225 570 5.8E-23 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08730 82029f9dc2dca5fe94a07acb2f983458 601 PANTHER PTHR36837 16 598 3.2E-195 T 23-04-2016 RD1_RS08730 82029f9dc2dca5fe94a07acb2f983458 601 SUPERFAMILY SSF53474 236 527 1.02E-32 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08730 82029f9dc2dca5fe94a07acb2f983458 601 PANTHER PTHR36837:SF2 16 598 3.2E-195 T 23-04-2016 RD1_RS08730 82029f9dc2dca5fe94a07acb2f983458 601 TIGRFAM TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I 66 596 2.9E-225 T 23-04-2016 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I GO:0005737|GO:0016746|GO:0042619 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.-|UniPathway: UPA00917 RD1_RS08730 82029f9dc2dca5fe94a07acb2f983458 601 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 109 281 2.6E-74 T 23-04-2016 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.- RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 377 396 1.3E-11 T 23-04-2016 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 621 637 1.3E-11 T 23-04-2016 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 497 515 1.3E-11 T 23-04-2016 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 Gene3D G3DSA:3.50.50.60 469 628 3.3E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 Gene3D G3DSA:3.50.50.60 361 464 7.0E-24 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 PANTHER PTHR22893:SF25 3 417 1.6E-231 T 23-04-2016 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 PANTHER PTHR22893 3 417 1.6E-231 T 23-04-2016 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 376 649 1.3E-25 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 513 522 1.3E-6 T 23-04-2016 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 376 398 1.3E-6 T 23-04-2016 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 622 636 1.3E-6 T 23-04-2016 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 328 5.8E-82 T 23-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 SUPERFAMILY SSF51395 3 362 6.28E-108 T 23-04-2016 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 Gene3D G3DSA:3.20.20.70 4 360 4.8E-115 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 SUPERFAMILY SSF51971 333 520 5.0E-41 T 23-04-2016 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 SUPERFAMILY SSF51905 556 653 1.13E-24 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS04420 4dad5ac2ba268da86e8d2486833a4ee8 675 SUPERFAMILY SSF51905 460 518 1.13E-24 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS18275 26ae20f9ce28cb46288dfa7dd3c644a5 326 PANTHER PTHR33376 5 326 3.1E-92 T 23-04-2016 RD1_RS18275 26ae20f9ce28cb46288dfa7dd3c644a5 326 PIRSF PIRSF006470 2 320 1.0E-84 T 23-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 RD1_RS18275 26ae20f9ce28cb46288dfa7dd3c644a5 326 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 35 310 2.1E-80 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS18275 26ae20f9ce28cb46288dfa7dd3c644a5 326 PANTHER PTHR33376:SF2 5 326 3.1E-92 T 23-04-2016 RD1_RS18275 26ae20f9ce28cb46288dfa7dd3c644a5 326 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 37 277 1.7E-64 T 23-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 RD1_RS17585 3101dc00936a2fb27a219f3e92964e3d 348 SUPERFAMILY SSF52540 35 87 4.56E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17585 3101dc00936a2fb27a219f3e92964e3d 348 SUPERFAMILY SSF52540 156 343 4.56E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17585 3101dc00936a2fb27a219f3e92964e3d 348 Gene3D G3DSA:3.40.50.300 154 267 3.2E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17585 3101dc00936a2fb27a219f3e92964e3d 348 Gene3D G3DSA:3.40.50.300 39 82 3.2E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17585 3101dc00936a2fb27a219f3e92964e3d 348 Pfam PF13469 Sulfotransferase family 40 266 1.4E-12 T 23-04-2016 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Gene3D G3DSA:2.150.10.10 730 855 1.5E-36 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Gene3D G3DSA:2.150.10.10 856 972 1.4E-17 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Gene3D G3DSA:2.150.10.10 585 729 2.3E-26 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Gene3D G3DSA:2.150.10.10 410 584 3.7E-23 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 SUPERFAMILY SSF51120 583 717 5.62E-23 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 SUPERFAMILY SSF51120 709 868 9.59E-25 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 SUPERFAMILY SSF51120 458 581 5.36E-19 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 502 523 3.1E-5 T 23-04-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 722 743 3.1E-5 T 23-04-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 785 801 0.035 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 566 580 3.8 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 529 545 0.1 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 510 527 0.2 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 838 855 0.026 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 857 873 1.5 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 803 818 0.099 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 821 837 0.015 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 667 684 0.07 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 722 738 0.034 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 704 720 8.6 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 766 783 0.0027 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 874 891 2.8 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 442 452 11.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 686 702 0.029 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 583 598 0.017 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 893 909 0.056 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 422 432 39.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 749 763 1.9 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 650 665 14.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 546 563 0.022 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 SUPERFAMILY SSF51120 823 1002 6.93E-25 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 PRINTS PR00313 NodO calcium binding signature 686 694 1.1E-9 T 23-04-2016 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 PRINTS PR00313 NodO calcium binding signature 591 599 1.1E-9 T 23-04-2016 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 PRINTS PR00313 NodO calcium binding signature 722 731 1.1E-9 T 23-04-2016 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 PRINTS PR00313 NodO calcium binding signature 544 555 1.1E-9 T 23-04-2016 RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 889 907 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 898 916 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 862 880 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 871 889 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 808 826 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 799 817 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 826 844 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 709 727 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 745 763 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 682 700 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 673 691 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS05390 00afc1d46d1c83f0c29df0f5d07c26bb 1029 SUPERFAMILY SSF51120 337 484 2.43E-6 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS05635 310c0d0769bc6655a40eaa212c1c5f2b 374 PANTHER PTHR13847:SF209 4 368 1.1E-149 T 23-04-2016 RD1_RS05635 310c0d0769bc6655a40eaa212c1c5f2b 374 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 4 369 2.6E-94 T 23-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS05635 310c0d0769bc6655a40eaa212c1c5f2b 374 PIRSF PIRSF006487 1 374 6.8E-70 T 23-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS05635 310c0d0769bc6655a40eaa212c1c5f2b 374 Gene3D G3DSA:2.40.30.110 288 374 2.1E-23 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS05635 310c0d0769bc6655a40eaa212c1c5f2b 374 Gene3D G3DSA:3.30.1360.120 4 56 4.2E-52 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS05635 310c0d0769bc6655a40eaa212c1c5f2b 374 Gene3D G3DSA:3.30.1360.120 147 234 4.2E-52 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS05635 310c0d0769bc6655a40eaa212c1c5f2b 374 SUPERFAMILY SSF103025 3 286 6.91E-77 T 23-04-2016 RD1_RS05635 310c0d0769bc6655a40eaa212c1c5f2b 374 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 270 364 3.5E-19 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS05635 310c0d0769bc6655a40eaa212c1c5f2b 374 SUPERFAMILY SSF101790 279 372 1.01E-22 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RD1_RS05635 310c0d0769bc6655a40eaa212c1c5f2b 374 PANTHER PTHR13847 4 368 1.1E-149 T 23-04-2016 RD1_RS05635 310c0d0769bc6655a40eaa212c1c5f2b 374 Gene3D G3DSA:3.30.70.1400 57 145 7.6E-25 T 23-04-2016 RD1_RS05635 310c0d0769bc6655a40eaa212c1c5f2b 374 Pfam PF01571 Aminomethyltransferase folate-binding domain 9 257 3.6E-76 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS02355 5f4a41e1efc79c8ac7db932e0ac00983 103 SMART SM00886 2 103 1.2E-21 T 23-04-2016 IPR013097 Stress responsive alpha-beta barrel RD1_RS02355 5f4a41e1efc79c8ac7db932e0ac00983 103 SUPERFAMILY SSF54909 1 102 3.58E-17 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS02355 5f4a41e1efc79c8ac7db932e0ac00983 103 Pfam PF07876 Stress responsive A/B Barrel Domain 2 102 1.1E-13 T 23-04-2016 IPR013097 Stress responsive alpha-beta barrel RD1_RS02355 5f4a41e1efc79c8ac7db932e0ac00983 103 Gene3D G3DSA:3.30.70.900 1 102 8.4E-25 T 23-04-2016 RD1_RS13180 75fe37db2db169911ddace2b92555f08 308 Gene3D G3DSA:1.10.3720.10 74 304 3.2E-59 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13180 75fe37db2db169911ddace2b92555f08 308 SUPERFAMILY SSF161098 69 294 1.96E-53 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13180 75fe37db2db169911ddace2b92555f08 308 PANTHER PTHR30193 19 308 1.5E-79 T 23-04-2016 RD1_RS13180 75fe37db2db169911ddace2b92555f08 308 PANTHER PTHR30193:SF6 19 308 1.5E-79 T 23-04-2016 RD1_RS13180 75fe37db2db169911ddace2b92555f08 308 Gene3D G3DSA:1.20.58.370 26 55 3.0E-4 T 23-04-2016 RD1_RS13180 75fe37db2db169911ddace2b92555f08 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 298 3.7E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS12960 7633fb3d8419404ea11bcb745138ee0e 374 SMART SM00937 83 193 3.2E-50 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RD1_RS12960 7633fb3d8419404ea11bcb745138ee0e 374 SUPERFAMILY SSF75620 31 363 2.49E-126 T 23-04-2016 RD1_RS12960 7633fb3d8419404ea11bcb745138ee0e 374 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 363 39.099 T 23-04-2016 IPR020853 Peptide chain release factor 2, bacterial GO:0005737|GO:0006415|GO:0016149 RD1_RS12960 7633fb3d8419404ea11bcb745138ee0e 374 Pfam PF00472 RF-1 domain 227 335 2.9E-36 T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RD1_RS12960 7633fb3d8419404ea11bcb745138ee0e 374 PANTHER PTHR11075 1 370 1.2E-157 T 23-04-2016 RD1_RS12960 7633fb3d8419404ea11bcb745138ee0e 374 PANTHER PTHR11075:SF6 1 370 1.2E-157 T 23-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RD1_RS12960 7633fb3d8419404ea11bcb745138ee0e 374 Gene3D G3DSA:1.20.58.410 1 114 4.9E-26 T 23-04-2016 RD1_RS12960 7633fb3d8419404ea11bcb745138ee0e 374 Gene3D G3DSA:3.30.160.20 226 302 3.7E-33 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain RD1_RS12960 7633fb3d8419404ea11bcb745138ee0e 374 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 3 360 6.6E-150 T 23-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RD1_RS12960 7633fb3d8419404ea11bcb745138ee0e 374 Pfam PF03462 PCRF domain 31 218 2.6E-55 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RD1_RS12960 7633fb3d8419404ea11bcb745138ee0e 374 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 243 259 - T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RD1_RS00985 51e7318e3d90fdef1a1cc4f2ca9857ca 136 SUPERFAMILY SSF52833 32 132 4.97E-16 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS00985 51e7318e3d90fdef1a1cc4f2ca9857ca 136 Gene3D G3DSA:3.40.30.10 35 133 1.1E-14 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS00985 51e7318e3d90fdef1a1cc4f2ca9857ca 136 Pfam PF00085 Thioredoxin 37 128 1.1E-9 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 RD1_RS12970 a3d01987437849247255fd0af5502105 404 SUPERFAMILY SSF53187 315 391 1.88E-48 T 23-04-2016 RD1_RS12970 a3d01987437849247255fd0af5502105 404 SUPERFAMILY SSF53187 173 268 1.88E-48 T 23-04-2016 RD1_RS12970 a3d01987437849247255fd0af5502105 404 SMART SM00646 234 389 1.1E-38 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RD1_RS12970 a3d01987437849247255fd0af5502105 404 Gene3D G3DSA:3.40.630.40 173 269 6.2E-52 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RD1_RS12970 a3d01987437849247255fd0af5502105 404 Gene3D G3DSA:3.40.630.40 316 391 6.2E-52 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RD1_RS12970 a3d01987437849247255fd0af5502105 404 PANTHER PTHR30404:SF0 172 390 7.4E-68 T 23-04-2016 RD1_RS12970 a3d01987437849247255fd0af5502105 404 PANTHER PTHR30404 172 390 7.4E-68 T 23-04-2016 RD1_RS12970 a3d01987437849247255fd0af5502105 404 Pfam PF11741 AMIN domain 45 119 4.5E-8 T 23-04-2016 IPR021731 AMIN domain RD1_RS12970 a3d01987437849247255fd0af5502105 404 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 175 389 6.4E-46 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RD1_RS17965 f1df69e5fa27ae3d52f19da5af4977cd 169 Gene3D G3DSA:3.10.129.10 4 168 5.9E-53 T 23-04-2016 IPR029069 HotDog domain RD1_RS17965 f1df69e5fa27ae3d52f19da5af4977cd 169 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 7 168 1.1E-75 T 23-04-2016 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RD1_RS17965 f1df69e5fa27ae3d52f19da5af4977cd 169 SUPERFAMILY SSF54637 5 167 1.9E-51 T 23-04-2016 IPR029069 HotDog domain RD1_RS17965 f1df69e5fa27ae3d52f19da5af4977cd 169 Pfam PF07977 FabA-like domain 29 159 1.1E-43 T 23-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RD1_RS11040 fdb74895c4ba71cb077eb5c353b821ec 303 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 29 290 8.4E-58 T 23-04-2016 RD1_RS11040 fdb74895c4ba71cb077eb5c353b821ec 303 Gene3D G3DSA:3.40.190.10 131 253 5.8E-14 T 23-04-2016 RD1_RS11040 fdb74895c4ba71cb077eb5c353b821ec 303 Gene3D G3DSA:3.40.190.10 48 130 7.6E-4 T 23-04-2016 RD1_RS11040 fdb74895c4ba71cb077eb5c353b821ec 303 PANTHER PTHR35841 4 299 4.2E-33 T 23-04-2016 RD1_RS11040 fdb74895c4ba71cb077eb5c353b821ec 303 SUPERFAMILY SSF53850 38 254 1.58E-52 T 23-04-2016 RD1_RS11040 fdb74895c4ba71cb077eb5c353b821ec 303 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 1 300 2.6E-103 T 23-04-2016 IPR017797 Phosphonate ABC transporter, periplasmic substrate-binding protein GO:0015604|GO:0015716|GO:0043190 RD1_RS11040 fdb74895c4ba71cb077eb5c353b821ec 303 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 4 260 2.7E-65 T 23-04-2016 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 RD1_RS13115 7f282ffe11f973a0779aaa516e3f7f4f 160 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 106 120 1.6E-9 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RD1_RS13115 7f282ffe11f973a0779aaa516e3f7f4f 160 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 121 134 1.6E-9 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RD1_RS13115 7f282ffe11f973a0779aaa516e3f7f4f 160 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 89 102 1.6E-9 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RD1_RS13115 7f282ffe11f973a0779aaa516e3f7f4f 160 Pfam PF00364 Biotin-requiring enzyme 87 159 1.2E-20 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RD1_RS13115 7f282ffe11f973a0779aaa516e3f7f4f 160 SUPERFAMILY SSF51230 86 160 3.4E-22 T 23-04-2016 IPR011053 Single hybrid motif RD1_RS13115 7f282ffe11f973a0779aaa516e3f7f4f 160 PANTHER PTHR23151 16 160 5.9E-25 T 23-04-2016 RD1_RS13115 7f282ffe11f973a0779aaa516e3f7f4f 160 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 116 133 - T 23-04-2016 IPR001882 Biotin-binding site RD1_RS13115 7f282ffe11f973a0779aaa516e3f7f4f 160 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 10 160 5.8E-34 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RD1_RS13115 7f282ffe11f973a0779aaa516e3f7f4f 160 Gene3D G3DSA:2.40.50.100 85 160 1.0E-27 T 23-04-2016 RD1_RS05790 5d43c0f7ebb8a2e473f144059c941c42 103 Gene3D G3DSA:3.30.160.190 1 80 7.9E-35 T 23-04-2016 RD1_RS05790 5d43c0f7ebb8a2e473f144059c941c42 103 PANTHER PTHR12219 2 93 2.8E-31 T 23-04-2016 IPR006885 NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial GO:0016651|GO:0022900 RD1_RS05790 5d43c0f7ebb8a2e473f144059c941c42 103 Pfam PF04800 ETC complex I subunit conserved region 2 98 1.1E-34 T 23-04-2016 IPR006885 NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial GO:0016651|GO:0022900 RD1_RS04385 1a29d4e5917182bb64b2a94a34fce3ad 241 Pfam PF00994 Probable molybdopterin binding domain 7 166 2.3E-33 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS04385 1a29d4e5917182bb64b2a94a34fce3ad 241 Gene3D G3DSA:3.40.980.10 3 204 4.0E-36 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS04385 1a29d4e5917182bb64b2a94a34fce3ad 241 SUPERFAMILY SSF53218 3 198 3.27E-38 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS04385 1a29d4e5917182bb64b2a94a34fce3ad 241 PANTHER PTHR13939 4 206 6.4E-45 T 23-04-2016 RD1_RS04385 1a29d4e5917182bb64b2a94a34fce3ad 241 SMART SM00852 7 169 1.8E-30 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS04065 cdc8df039b2c391c77135b2b6c15aa3e 347 SUPERFAMILY SSF56281 60 329 5.46E-51 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS04065 cdc8df039b2c391c77135b2b6c15aa3e 347 TIGRFAM TIGR04559 SoxH_rel_PQQ_2: quinoprotein relay system zinc metallohydrolase 2 65 347 1.8E-112 T 23-04-2016 IPR030829 Quinoprotein relay system zinc metallohydrolase 2 RD1_RS04065 cdc8df039b2c391c77135b2b6c15aa3e 347 Pfam PF00753 Metallo-beta-lactamase superfamily 90 276 6.4E-20 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS04065 cdc8df039b2c391c77135b2b6c15aa3e 347 Gene3D G3DSA:3.60.15.10 64 288 1.5E-45 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS04065 cdc8df039b2c391c77135b2b6c15aa3e 347 PANTHER PTHR11935 46 277 2.2E-43 T 23-04-2016 RD1_RS04065 cdc8df039b2c391c77135b2b6c15aa3e 347 PANTHER PTHR11935:SF95 46 277 2.2E-43 T 23-04-2016 RD1_RS04065 cdc8df039b2c391c77135b2b6c15aa3e 347 SMART SM00849 92 276 5.5E-19 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS00555 a49e5b31d74e260413dc5e726ba9c22d 334 Pfam PF01078 Magnesium chelatase, subunit ChlI 7 180 1.3E-14 T 23-04-2016 IPR000523 Magnesium chelatase ChlI domain RD1_RS00555 a49e5b31d74e260413dc5e726ba9c22d 334 SUPERFAMILY SSF52540 4 325 6.48E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00555 a49e5b31d74e260413dc5e726ba9c22d 334 SMART SM00382 28 203 2.6E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS00555 a49e5b31d74e260413dc5e726ba9c22d 334 Gene3D G3DSA:1.10.8.80 246 332 5.8E-28 T 23-04-2016 RD1_RS00555 a49e5b31d74e260413dc5e726ba9c22d 334 TIGRFAM TIGR02030 BchI-ChlI: magnesium chelatase ATPase subunit I 5 334 1.6E-164 T 23-04-2016 IPR011775 Magnesium chelatase, ATPase subunit I GO:0005524|GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00668 RD1_RS00555 a49e5b31d74e260413dc5e726ba9c22d 334 Gene3D G3DSA:3.40.50.300 4 199 1.0E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00555 a49e5b31d74e260413dc5e726ba9c22d 334 PANTHER PTHR32039:SF10 5 334 3.8E-124 T 23-04-2016 RD1_RS00555 a49e5b31d74e260413dc5e726ba9c22d 334 PANTHER PTHR32039 5 334 3.8E-124 T 23-04-2016 RD1_RS03935 7320acfef48e51d612e2975db070eadf 289 Pfam PF02653 Branched-chain amino acid transport system / permease component 5 276 1.2E-41 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS03935 7320acfef48e51d612e2975db070eadf 289 Gene3D G3DSA:1.10.3470.10 44 202 9.1E-4 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RD1_RS03935 7320acfef48e51d612e2975db070eadf 289 PANTHER PTHR11795 3 287 3.4E-65 T 23-04-2016 RD1_RS03935 7320acfef48e51d612e2975db070eadf 289 PANTHER PTHR11795:SF371 3 287 3.4E-65 T 23-04-2016 RD1_RS00765 f1d8eee4921212ca77643a7b3edfa932 226 Pfam PF03963 Flagellar hook capping protein - N-terminal region 6 75 2.2E-15 T 23-04-2016 IPR005648 Flagellar hook capping protein RD1_RS00765 f1d8eee4921212ca77643a7b3edfa932 226 Pfam PF13860 FlgD Ig-like domain 106 172 3.3E-7 T 23-04-2016 IPR025965 FlgD Ig-like domain RD1_RS00765 f1d8eee4921212ca77643a7b3edfa932 226 PANTHER PTHR30435:SF15 1 169 4.0E-12 T 23-04-2016 RD1_RS00765 f1d8eee4921212ca77643a7b3edfa932 226 PANTHER PTHR30435 1 169 4.0E-12 T 23-04-2016 RD1_RS01200 36ebe145fd078d48e9d63ae9e5e8a9ec 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 3 259 2.0E-99 T 23-04-2016 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 RD1_RS01200 36ebe145fd078d48e9d63ae9e5e8a9ec 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 2.8E-44 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RD1_RS01200 36ebe145fd078d48e9d63ae9e5e8a9ec 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 148 243 8.1E-31 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RD1_RS01200 36ebe145fd078d48e9d63ae9e5e8a9ec 261 PANTHER PTHR30435 1 261 8.7E-104 T 23-04-2016 RD1_RS01200 36ebe145fd078d48e9d63ae9e5e8a9ec 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 10 30 - T 23-04-2016 IPR019776 Flagellar basal body rod protein, conserved site RD1_RS01200 36ebe145fd078d48e9d63ae9e5e8a9ec 261 Pfam PF00460 Flagella basal body rod protein 4 33 1.3E-10 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RD1_RS01200 36ebe145fd078d48e9d63ae9e5e8a9ec 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 183 259 1.1E-24 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RD1_RS01200 36ebe145fd078d48e9d63ae9e5e8a9ec 261 PANTHER PTHR30435:SF19 1 261 8.7E-104 T 23-04-2016 RD1_RS01200 36ebe145fd078d48e9d63ae9e5e8a9ec 261 SUPERFAMILY SSF117143 92 222 4.45E-35 T 23-04-2016 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 PANTHER PTHR11778:SF0 1 426 2.8E-172 T 23-04-2016 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 417 5.8E-143 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 109 1.0E-22 T 23-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 Gene3D G3DSA:1.10.287.40 1 104 1.9E-23 T 23-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 229 399 4.8E-27 T 23-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 PANTHER PTHR11778 1 426 2.8E-172 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 SUPERFAMILY SSF55681 118 422 2.39E-87 T 23-04-2016 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 SUPERFAMILY SSF46589 1 114 1.83E-22 T 23-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 422 36.642 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 Gene3D G3DSA:3.30.930.10 107 420 1.3E-128 T 23-04-2016 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 PIRSF PIRSF001529 1 426 9.4E-148 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 8.2E-29 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 8.2E-29 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 8.2E-29 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 8.2E-29 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RD1_RS11705 287a2f2c067e4eaa4c6af981f9cf3b1f 430 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 8.2E-29 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RD1_RS17380 8e513213263fcdf1148e9df88c72a675 100 Pfam PF00547 Urease, gamma subunit 1 99 5.8E-48 T 23-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17380 8e513213263fcdf1148e9df88c72a675 100 Gene3D G3DSA:3.30.280.10 1 100 2.5E-50 T 23-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17380 8e513213263fcdf1148e9df88c72a675 100 PANTHER PTHR33569:SF1 2 100 1.8E-45 T 23-04-2016 RD1_RS17380 8e513213263fcdf1148e9df88c72a675 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 2.0E-43 T 23-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17380 8e513213263fcdf1148e9df88c72a675 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 100 2.5E-48 T 23-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17380 8e513213263fcdf1148e9df88c72a675 100 SUPERFAMILY SSF54111 1 100 1.16E-45 T 23-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17380 8e513213263fcdf1148e9df88c72a675 100 PIRSF PIRSF001223 1 100 2.4E-51 T 23-04-2016 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17380 8e513213263fcdf1148e9df88c72a675 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 34.248 T 23-04-2016 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17380 8e513213263fcdf1148e9df88c72a675 100 PANTHER PTHR33569 2 100 1.8E-45 T 23-04-2016 RD1_RS13010 9c9ed7573ef84b0ce7260b1404f230ec 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 2.7E-7 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS13010 9c9ed7573ef84b0ce7260b1404f230ec 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 111 124 2.7E-7 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS13010 9c9ed7573ef84b0ce7260b1404f230ec 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 2.7E-7 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS13010 9c9ed7573ef84b0ce7260b1404f230ec 290 Gene3D G3DSA:3.40.50.1820 3 286 8.3E-65 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS13010 9c9ed7573ef84b0ce7260b1404f230ec 290 PANTHER PTHR10992:SF778 12 288 1.9E-63 T 23-04-2016 RD1_RS13010 9c9ed7573ef84b0ce7260b1404f230ec 290 SUPERFAMILY SSF53474 6 288 1.71E-71 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS13010 9c9ed7573ef84b0ce7260b1404f230ec 290 PANTHER PTHR10992 12 288 1.9E-63 T 23-04-2016 RD1_RS13010 9c9ed7573ef84b0ce7260b1404f230ec 290 Pfam PF00561 alpha/beta hydrolase fold 27 273 2.6E-27 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS09020 52d14f13e10b7461beed3942a1fba145 337 PANTHER PTHR20941:SF1 68 335 1.2E-109 T 23-04-2016 RD1_RS09020 52d14f13e10b7461beed3942a1fba145 337 Pfam PF00809 Pterin binding enzyme 75 315 6.3E-79 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 RD1_RS09020 52d14f13e10b7461beed3942a1fba145 337 PANTHER PTHR20941 68 335 1.2E-109 T 23-04-2016 RD1_RS09020 52d14f13e10b7461beed3942a1fba145 337 Gene3D G3DSA:3.20.20.20 68 331 3.6E-101 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 RD1_RS09020 52d14f13e10b7461beed3942a1fba145 337 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 74 89 - T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 RD1_RS09020 52d14f13e10b7461beed3942a1fba145 337 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 106 119 - T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 RD1_RS09020 52d14f13e10b7461beed3942a1fba145 337 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 74 329 3.0E-90 T 23-04-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 RD1_RS09020 52d14f13e10b7461beed3942a1fba145 337 SUPERFAMILY SSF51717 67 331 8.37E-93 T 23-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 PANTHER PTHR23083 285 529 2.5E-40 T 23-04-2016 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 PANTHER PTHR23083 33 88 2.5E-40 T 23-04-2016 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 SUPERFAMILY SSF48452 363 528 7.34E-33 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 Gene3D G3DSA:1.25.40.10 276 529 9.8E-51 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 Gene3D G3DSA:1.25.40.10 144 184 3.9E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 SUPERFAMILY SSF48452 132 183 2.33E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 SUPERFAMILY SSF48452 30 99 2.33E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 SUPERFAMILY SSF48452 256 388 2.92E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 Gene3D G3DSA:1.25.40.10 30 83 1.1E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 Pfam PF13429 Tetratricopeptide repeat 395 520 8.4E-9 T 23-04-2016 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 Pfam PF13432 Tetratricopeptide repeat 329 387 2.6E-5 T 23-04-2016 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 Pfam PF13432 Tetratricopeptide repeat 30 88 0.0034 T 23-04-2016 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 SMART SM00028 324 357 420.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 SMART SM00028 500 533 81.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 SMART SM00028 431 465 83.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 SMART SM00028 26 59 13.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 SMART SM00028 358 391 0.013 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 SMART SM00028 397 430 7.5E-5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS15615 471e494985c5b6c7d11f93f0904f49d0 569 SMART SM00028 466 499 30.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS04470 5a64ad601fe6b99d43e828b0c4ddca3c 233 Gene3D G3DSA:3.40.50.150 8 227 4.4E-73 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS04470 5a64ad601fe6b99d43e828b0c4ddca3c 233 PANTHER PTHR39963 19 211 2.1E-19 T 23-04-2016 RD1_RS04470 5a64ad601fe6b99d43e828b0c4ddca3c 233 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 126 222 1.7E-37 T 23-04-2016 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 RD1_RS04470 5a64ad601fe6b99d43e828b0c4ddca3c 233 SUPERFAMILY SSF53335 51 194 9.92E-10 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS08610 89c0e23335d4d59bba4107b9d14f304d 312 SUPERFAMILY SSF161098 92 296 6.93E-17 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08610 89c0e23335d4d59bba4107b9d14f304d 312 PANTHER PTHR30465:SF0 9 309 9.9E-85 T 23-04-2016 RD1_RS08610 89c0e23335d4d59bba4107b9d14f304d 312 Gene3D G3DSA:1.10.3720.10 89 305 3.4E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08610 89c0e23335d4d59bba4107b9d14f304d 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 307 8.2E-35 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08610 89c0e23335d4d59bba4107b9d14f304d 312 PANTHER PTHR30465 9 309 9.9E-85 T 23-04-2016 RD1_RS09290 7f6a0aeb6d284246af7ebb9b1d115d56 435 SUPERFAMILY SSF51556 70 372 3.2E-97 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS09290 7f6a0aeb6d284246af7ebb9b1d115d56 435 Gene3D G3DSA:3.20.20.140 72 372 8.6E-108 T 23-04-2016 RD1_RS09290 7f6a0aeb6d284246af7ebb9b1d115d56 435 PANTHER PTHR11271:SF6 21 433 2.2E-137 T 23-04-2016 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|UniPathway: UPA00603 RD1_RS09290 7f6a0aeb6d284246af7ebb9b1d115d56 435 SUPERFAMILY SSF51338 13 89 8.03E-20 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS09290 7f6a0aeb6d284246af7ebb9b1d115d56 435 Pfam PF01979 Amidohydrolase family 67 427 1.2E-59 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RD1_RS09290 7f6a0aeb6d284246af7ebb9b1d115d56 435 PANTHER PTHR11271 21 433 2.2E-137 T 23-04-2016 RD1_RS09290 7f6a0aeb6d284246af7ebb9b1d115d56 435 Gene3D G3DSA:2.30.40.10 373 394 1.8E-10 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS09290 7f6a0aeb6d284246af7ebb9b1d115d56 435 Gene3D G3DSA:2.30.40.10 28 71 1.8E-10 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS09290 7f6a0aeb6d284246af7ebb9b1d115d56 435 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 28 426 3.1E-158 T 23-04-2016 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|UniPathway: UPA00603 RD1_RS17350 001032ad2f828182a250079d5b18239a 223 Pfam PF07729 FCD domain 81 204 2.5E-22 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS17350 001032ad2f828182a250079d5b18239a 223 SMART SM00345 13 71 1.9E-11 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS17350 001032ad2f828182a250079d5b18239a 223 SMART SM00895 81 206 3.7E-17 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS17350 001032ad2f828182a250079d5b18239a 223 SUPERFAMILY SSF46785 7 100 1.23E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS17350 001032ad2f828182a250079d5b18239a 223 Gene3D G3DSA:1.20.120.530 75 217 5.5E-31 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS17350 001032ad2f828182a250079d5b18239a 223 Gene3D G3DSA:1.10.10.10 6 71 7.7E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS17350 001032ad2f828182a250079d5b18239a 223 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 9.8E-5 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS17350 001032ad2f828182a250079d5b18239a 223 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 9.8E-5 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS17350 001032ad2f828182a250079d5b18239a 223 PANTHER PTHR11751 8 97 6.8E-23 T 23-04-2016 RD1_RS17350 001032ad2f828182a250079d5b18239a 223 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 1.6E-14 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS17350 001032ad2f828182a250079d5b18239a 223 SUPERFAMILY SSF48008 76 214 6.28E-28 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS17920 b0c3ba80bb57ad784e961451d792f7d6 450 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 16 444 30.463 T 23-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS17920 b0c3ba80bb57ad784e961451d792f7d6 450 ProSitePatterns PS00885 EPSP synthase signature 2. 352 370 - T 23-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS17920 b0c3ba80bb57ad784e961451d792f7d6 450 PIRSF PIRSF000505 8 448 7.1E-119 T 23-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS17920 b0c3ba80bb57ad784e961451d792f7d6 450 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 20 443 7.8E-119 T 23-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS17920 b0c3ba80bb57ad784e961451d792f7d6 450 SUPERFAMILY SSF55205 15 444 3.6E-118 T 23-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RD1_RS17920 b0c3ba80bb57ad784e961451d792f7d6 450 PANTHER PTHR21090 17 447 1.6E-151 T 23-04-2016 RD1_RS17920 b0c3ba80bb57ad784e961451d792f7d6 450 PANTHER PTHR21090:SF5 17 447 1.6E-151 T 23-04-2016 RD1_RS17920 b0c3ba80bb57ad784e961451d792f7d6 450 Gene3D G3DSA:3.65.10.10 26 210 2.1E-45 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RD1_RS17920 b0c3ba80bb57ad784e961451d792f7d6 450 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 16 436 2.5E-96 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RD1_RS17920 b0c3ba80bb57ad784e961451d792f7d6 450 Gene3D G3DSA:3.65.10.10 211 446 1.5E-54 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RD1_RS17920 b0c3ba80bb57ad784e961451d792f7d6 450 ProSitePatterns PS00104 EPSP synthase signature 1. 95 109 - T 23-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS19455 de8d10ffc4f148f3270e69e20ac9a52c 446 PANTHER PTHR11938 127 338 1.8E-50 T 23-04-2016 RD1_RS19455 de8d10ffc4f148f3270e69e20ac9a52c 446 PANTHER PTHR11938 355 398 1.8E-50 T 23-04-2016 RD1_RS19455 de8d10ffc4f148f3270e69e20ac9a52c 446 Pfam PF01645 Conserved region in glutamate synthase 84 336 7.4E-77 T 23-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RD1_RS19455 de8d10ffc4f148f3270e69e20ac9a52c 446 PANTHER PTHR11938:SF65 127 338 1.8E-50 T 23-04-2016 RD1_RS19455 de8d10ffc4f148f3270e69e20ac9a52c 446 PANTHER PTHR11938:SF65 355 398 1.8E-50 T 23-04-2016 RD1_RS19455 de8d10ffc4f148f3270e69e20ac9a52c 446 PIRSF PIRSF500061 2 444 1.4E-163 T 23-04-2016 RD1_RS19455 de8d10ffc4f148f3270e69e20ac9a52c 446 PIRSF PIRSF006429 2 445 1.3E-147 T 23-04-2016 IPR024188 Glutamate synthase large subunit-like protein RD1_RS19455 de8d10ffc4f148f3270e69e20ac9a52c 446 SUPERFAMILY SSF51395 39 442 4.49E-90 T 23-04-2016 RD1_RS19455 de8d10ffc4f148f3270e69e20ac9a52c 446 Gene3D G3DSA:3.20.20.70 19 442 1.5E-117 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS00895 3f1ba3fcb41b77fa5c5fd254d64cda0c 291 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 72 279 5.9E-65 T 23-04-2016 RD1_RS00895 3f1ba3fcb41b77fa5c5fd254d64cda0c 291 PANTHER PTHR10000:SF7 72 285 1.5E-72 T 23-04-2016 RD1_RS00895 3f1ba3fcb41b77fa5c5fd254d64cda0c 291 Gene3D G3DSA:1.10.150.210 86 135 5.6E-26 T 23-04-2016 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|UniPathway: UPA00135 RD1_RS00895 3f1ba3fcb41b77fa5c5fd254d64cda0c 291 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 78 248 6.5E-31 T 23-04-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 RD1_RS00895 3f1ba3fcb41b77fa5c5fd254d64cda0c 291 Pfam PF12710 haloacid dehalogenase-like hydrolase 78 246 5.1E-16 T 23-04-2016 RD1_RS00895 3f1ba3fcb41b77fa5c5fd254d64cda0c 291 Gene3D G3DSA:3.40.50.1000 136 277 5.0E-34 T 23-04-2016 IPR023214 HAD-like domain RD1_RS00895 3f1ba3fcb41b77fa5c5fd254d64cda0c 291 PANTHER PTHR10000 72 285 1.5E-72 T 23-04-2016 RD1_RS00895 3f1ba3fcb41b77fa5c5fd254d64cda0c 291 SUPERFAMILY SSF56784 73 279 2.1E-44 T 23-04-2016 IPR023214 HAD-like domain RD1_RS14210 d0ad4e3d79389c67432d1ee4a33df748 435 PANTHER PTHR22777 12 435 4.0E-136 T 23-04-2016 RD1_RS14210 d0ad4e3d79389c67432d1ee4a33df748 435 SMART SM00116 294 342 0.068 T 23-04-2016 IPR000644 CBS domain RD1_RS14210 d0ad4e3d79389c67432d1ee4a33df748 435 SMART SM00116 221 270 5.7 T 23-04-2016 IPR000644 CBS domain RD1_RS14210 d0ad4e3d79389c67432d1ee4a33df748 435 Pfam PF00571 CBS domain 212 269 4.5E-5 T 23-04-2016 IPR000644 CBS domain RD1_RS14210 d0ad4e3d79389c67432d1ee4a33df748 435 Pfam PF00571 CBS domain 290 342 5.5E-9 T 23-04-2016 IPR000644 CBS domain RD1_RS14210 d0ad4e3d79389c67432d1ee4a33df748 435 Gene3D G3DSA:3.30.465.10 337 433 1.6E-26 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RD1_RS14210 d0ad4e3d79389c67432d1ee4a33df748 435 Pfam PF01595 Domain of unknown function DUF21 18 196 8.5E-46 T 23-04-2016 IPR002550 Domain of unknown function DUF21 RD1_RS14210 d0ad4e3d79389c67432d1ee4a33df748 435 Pfam PF03471 Transporter associated domain 359 433 9.2E-20 T 23-04-2016 IPR005170 Transporter-associated domain RD1_RS14210 d0ad4e3d79389c67432d1ee4a33df748 435 SUPERFAMILY SSF54631 207 353 1.77E-33 T 23-04-2016 RD1_RS14210 d0ad4e3d79389c67432d1ee4a33df748 435 SMART SM01091 358 435 1.6E-24 T 23-04-2016 IPR005170 Transporter-associated domain RD1_RS14210 d0ad4e3d79389c67432d1ee4a33df748 435 SUPERFAMILY SSF56176 357 433 7.63E-22 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RD1_RS14210 d0ad4e3d79389c67432d1ee4a33df748 435 Gene3D G3DSA:3.10.580.10 204 336 1.9E-21 T 23-04-2016 RD1_RS08450 aeb53c1f74c282507a8360c6a3dd81be 364 PANTHER PTHR11959:SF1 6 364 2.4E-112 T 23-04-2016 RD1_RS08450 aeb53c1f74c282507a8360c6a3dd81be 364 PANTHER PTHR11959 6 364 2.4E-112 T 23-04-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 RD1_RS08450 aeb53c1f74c282507a8360c6a3dd81be 364 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 165 277 2.1E-13 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RD1_RS08450 aeb53c1f74c282507a8360c6a3dd81be 364 SUPERFAMILY SSF54593 15 348 1.75E-72 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS08450 aeb53c1f74c282507a8360c6a3dd81be 364 Gene3D G3DSA:3.10.180.10 15 150 6.3E-33 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS08450 aeb53c1f74c282507a8360c6a3dd81be 364 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 16 149 5.2E-47 T 23-04-2016 RD1_RS08450 aeb53c1f74c282507a8360c6a3dd81be 364 Gene3D G3DSA:3.10.180.10 161 361 2.6E-59 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS08450 aeb53c1f74c282507a8360c6a3dd81be 364 PIRSF PIRSF009283 6 361 2.5E-101 T 23-04-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 RD1_RS08450 aeb53c1f74c282507a8360c6a3dd81be 364 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 23 360 1.9E-109 T 23-04-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 RD1_RS17065 384d92201888f765df084e42f01d94e9 304 Gene3D G3DSA:1.10.3720.10 7 279 3.8E-64 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17065 384d92201888f765df084e42f01d94e9 304 PANTHER PTHR30406:SF2 2 297 9.4E-94 T 23-04-2016 RD1_RS17065 384d92201888f765df084e42f01d94e9 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 285 1.1E-21 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17065 384d92201888f765df084e42f01d94e9 304 SUPERFAMILY SSF161098 55 278 9.03E-63 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17065 384d92201888f765df084e42f01d94e9 304 PANTHER PTHR30406 2 297 9.4E-94 T 23-04-2016 RD1_RS00515 3a84bebeb10ba7189c203bb1bbcd5d2c 294 Pfam PF00348 Polyprenyl synthetase 26 252 5.5E-43 T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RD1_RS00515 3a84bebeb10ba7189c203bb1bbcd5d2c 294 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 78 94 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RD1_RS00515 3a84bebeb10ba7189c203bb1bbcd5d2c 294 PANTHER PTHR12001 1 245 5.0E-58 T 23-04-2016 IPR017446 Polyprenyl synthetase-related RD1_RS00515 3a84bebeb10ba7189c203bb1bbcd5d2c 294 SUPERFAMILY SSF48576 22 276 4.11E-62 T 23-04-2016 IPR008949 Isoprenoid synthase domain RD1_RS00515 3a84bebeb10ba7189c203bb1bbcd5d2c 294 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 201 213 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RD1_RS00515 3a84bebeb10ba7189c203bb1bbcd5d2c 294 PANTHER PTHR12001:SF23 1 245 5.0E-58 T 23-04-2016 RD1_RS00515 3a84bebeb10ba7189c203bb1bbcd5d2c 294 Gene3D G3DSA:1.10.600.10 5 275 2.1E-63 T 23-04-2016 IPR008949 Isoprenoid synthase domain RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 112 132 7.9E-63 T 23-04-2016 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 234 255 7.9E-63 T 23-04-2016 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 159 180 7.9E-63 T 23-04-2016 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 77 102 7.9E-63 T 23-04-2016 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 439 458 7.9E-63 T 23-04-2016 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 256 282 7.9E-63 T 23-04-2016 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 324 336 7.9E-63 T 23-04-2016 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 438 460 1.4E-5 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 38 57 1.4E-5 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 274 296 1.4E-5 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PANTHER PTHR22773:SF50 3 500 2.1E-234 T 23-04-2016 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PANTHER PTHR22773:SF50 568 647 2.1E-234 T 23-04-2016 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PANTHER PTHR22773:SF50 523 545 2.1E-234 T 23-04-2016 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 3 504 2.0E-210 T 23-04-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PANTHER PTHR22773 3 500 2.1E-234 T 23-04-2016 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PANTHER PTHR22773 568 647 2.1E-234 T 23-04-2016 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 PANTHER PTHR22773 523 545 2.1E-234 T 23-04-2016 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 Pfam PF00361 Proton-conducting membrane transporter 135 446 1.2E-91 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RD1_RS15015 8415f006efbc6700417176bc9d0eb91b 701 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 60 123 1.4E-21 T 23-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RD1_RS07775 3e0f1cb1115347bc3116f8525a3049d2 164 SUPERFAMILY SSF110087 6 144 2.35E-47 T 23-04-2016 IPR007410 DR1885-like metal-binding protein RD1_RS07775 3e0f1cb1115347bc3116f8525a3049d2 164 Pfam PF04314 Protein of unknown function (DUF461) 28 138 1.3E-41 T 23-04-2016 IPR007410 DR1885-like metal-binding protein RD1_RS07775 3e0f1cb1115347bc3116f8525a3049d2 164 PANTHER PTHR36302:SF1 10 161 3.6E-32 T 23-04-2016 RD1_RS07775 3e0f1cb1115347bc3116f8525a3049d2 164 PANTHER PTHR36302 10 161 3.6E-32 T 23-04-2016 RD1_RS14440 98db0e880adeca3e28946e7ce3badd40 290 SUPERFAMILY SSF103481 180 284 1.44E-13 T 23-04-2016 RD1_RS14440 98db0e880adeca3e28946e7ce3badd40 290 Pfam PF00892 EamA-like transporter family 149 278 8.6E-11 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS14440 98db0e880adeca3e28946e7ce3badd40 290 Pfam PF00892 EamA-like transporter family 5 137 8.3E-11 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS14440 98db0e880adeca3e28946e7ce3badd40 290 SUPERFAMILY SSF103481 44 141 9.94E-12 T 23-04-2016 RD1_RS14440 98db0e880adeca3e28946e7ce3badd40 290 PANTHER PTHR22911 1 286 8.4E-42 T 23-04-2016 RD1_RS06470 07a5a6a0352a72349f49195605c5b2c7 105 SMART SM01403 8 102 1.6E-57 T 23-04-2016 IPR027486 Ribosomal protein S10 domain RD1_RS06470 07a5a6a0352a72349f49195605c5b2c7 105 PANTHER PTHR11700 1 103 1.6E-52 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RD1_RS06470 07a5a6a0352a72349f49195605c5b2c7 105 SUPERFAMILY SSF54999 7 103 7.72E-39 T 23-04-2016 IPR027486 Ribosomal protein S10 domain RD1_RS06470 07a5a6a0352a72349f49195605c5b2c7 105 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 4 103 27.017 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RD1_RS06470 07a5a6a0352a72349f49195605c5b2c7 105 PRINTS PR00971 Ribosomal protein S10 family signature 62 76 1.14E-17 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RD1_RS06470 07a5a6a0352a72349f49195605c5b2c7 105 PRINTS PR00971 Ribosomal protein S10 family signature 6 19 1.14E-17 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RD1_RS06470 07a5a6a0352a72349f49195605c5b2c7 105 PRINTS PR00971 Ribosomal protein S10 family signature 41 56 1.14E-17 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RD1_RS06470 07a5a6a0352a72349f49195605c5b2c7 105 Pfam PF00338 Ribosomal protein S10p/S20e 8 102 1.7E-36 T 23-04-2016 IPR027486 Ribosomal protein S10 domain RD1_RS06470 07a5a6a0352a72349f49195605c5b2c7 105 Gene3D G3DSA:3.30.70.600 5 103 1.2E-44 T 23-04-2016 IPR027486 Ribosomal protein S10 domain RD1_RS06470 07a5a6a0352a72349f49195605c5b2c7 105 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 5 102 2.2E-46 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RD1_RS01990 1ca2484837c0dec5554685e84d91f7f4 203 PANTHER PTHR11067:SF9 3 199 1.9E-65 T 23-04-2016 RD1_RS01990 1ca2484837c0dec5554685e84d91f7f4 203 PANTHER PTHR11067 3 199 1.9E-65 T 23-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RD1_RS01990 1ca2484837c0dec5554685e84d91f7f4 203 Pfam PF01725 Ham1 family 10 198 2.9E-50 T 23-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RD1_RS01990 1ca2484837c0dec5554685e84d91f7f4 203 SUPERFAMILY SSF52972 7 199 2.09E-64 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RD1_RS01990 1ca2484837c0dec5554685e84d91f7f4 203 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 8 203 46.025 T 23-04-2016 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RD1_RS01990 1ca2484837c0dec5554685e84d91f7f4 203 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 10 198 7.7E-49 T 23-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RD1_RS01990 1ca2484837c0dec5554685e84d91f7f4 203 Gene3D G3DSA:3.90.950.10 3 199 7.3E-72 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RD1_RS14735 15a174edac9dffc8c575c2160243df68 339 SUPERFAMILY SSF52418 76 337 1.31E-89 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RD1_RS14735 15a174edac9dffc8c575c2160243df68 339 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 3 335 36.105 T 23-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 RD1_RS14735 15a174edac9dffc8c575c2160243df68 339 Pfam PF02885 Glycosyl transferase family, helical bundle domain 16 66 1.3E-16 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RD1_RS14735 15a174edac9dffc8c575c2160243df68 339 PANTHER PTHR11922 75 337 5.6E-106 T 23-04-2016 RD1_RS14735 15a174edac9dffc8c575c2160243df68 339 PANTHER PTHR11922:SF5 75 337 5.6E-106 T 23-04-2016 RD1_RS14735 15a174edac9dffc8c575c2160243df68 339 SUPERFAMILY SSF47648 13 69 2.62E-15 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RD1_RS14735 15a174edac9dffc8c575c2160243df68 339 Pfam PF00591 Glycosyl transferase family, a/b domain 76 325 1.6E-86 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RD1_RS14735 15a174edac9dffc8c575c2160243df68 339 Gene3D G3DSA:1.20.970.10 12 70 1.8E-21 T 23-04-2016 RD1_RS14735 15a174edac9dffc8c575c2160243df68 339 Gene3D G3DSA:3.40.1030.10 73 337 1.1E-101 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RD1_RS14735 15a174edac9dffc8c575c2160243df68 339 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 14 334 6.9E-110 T 23-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 RD1_RS03100 60f12cf0224ba2606957b5bdd615e716 340 Gene3D G3DSA:3.30.360.10 131 322 2.9E-26 T 23-04-2016 RD1_RS03100 60f12cf0224ba2606957b5bdd615e716 340 PANTHER PTHR22604:SF123 3 321 8.7E-48 T 23-04-2016 RD1_RS03100 60f12cf0224ba2606957b5bdd615e716 340 SUPERFAMILY SSF51735 3 145 8.22E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03100 60f12cf0224ba2606957b5bdd615e716 340 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 126 241 5.5E-8 T 23-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS03100 60f12cf0224ba2606957b5bdd615e716 340 PANTHER PTHR22604 3 321 8.7E-48 T 23-04-2016 RD1_RS03100 60f12cf0224ba2606957b5bdd615e716 340 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 113 4.3E-16 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RD1_RS03100 60f12cf0224ba2606957b5bdd615e716 340 Gene3D G3DSA:3.40.50.720 3 130 1.7E-30 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03100 60f12cf0224ba2606957b5bdd615e716 340 SUPERFAMILY SSF55347 121 277 4.25E-18 T 23-04-2016 RD1_RS18900 47ea52292e00d0b2024041df69343517 269 SUPERFAMILY SSF161098 12 266 3.4E-51 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18900 47ea52292e00d0b2024041df69343517 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 263 1.3E-14 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18900 47ea52292e00d0b2024041df69343517 269 PANTHER PTHR30222:SF7 16 264 3.1E-83 T 23-04-2016 RD1_RS18900 47ea52292e00d0b2024041df69343517 269 Gene3D G3DSA:1.10.3720.10 17 268 4.5E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18900 47ea52292e00d0b2024041df69343517 269 PANTHER PTHR30222 16 264 3.1E-83 T 23-04-2016 RD1_RS18570 01e72b75b120d56f4c780962743285dc 366 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 158 295 1.5E-8 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RD1_RS18570 01e72b75b120d56f4c780962743285dc 366 SMART SM00382 153 303 3.5E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS18570 01e72b75b120d56f4c780962743285dc 366 SUPERFAMILY SSF52540 118 360 3.09E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18570 01e72b75b120d56f4c780962743285dc 366 Gene3D G3DSA:3.40.50.300 122 312 1.5E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13730 c4bbfed78d74ec19346cc8d126a87064 329 PANTHER PTHR30503 7 305 1.9E-70 T 23-04-2016 RD1_RS13730 c4bbfed78d74ec19346cc8d126a87064 329 Pfam PF05661 Protein of unknown function (DUF808) 2 306 6.2E-120 T 23-04-2016 IPR008526 Inner membrane protein YedI RD1_RS13730 c4bbfed78d74ec19346cc8d126a87064 329 PIRSF PIRSF016660 1 316 3.8E-105 T 23-04-2016 IPR008526 Inner membrane protein YedI RD1_RS18815 77af8654ec09c31715d27fb5b92c9e8d 866 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 138 672 3.0E-69 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS18815 77af8654ec09c31715d27fb5b92c9e8d 866 PANTHER PTHR33362 431 755 5.8E-235 T 23-04-2016 RD1_RS18815 77af8654ec09c31715d27fb5b92c9e8d 866 PANTHER PTHR33362 2 356 5.8E-235 T 23-04-2016 RD1_RS18815 77af8654ec09c31715d27fb5b92c9e8d 866 Pfam PF11874 Domain of unknown function (DUF3394) 676 857 4.8E-65 T 23-04-2016 IPR021814 Protein of unknown function DUF3394 RD1_RS18815 77af8654ec09c31715d27fb5b92c9e8d 866 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 36 728 2.7E-190 T 23-04-2016 IPR011853 TRAP transporter, 4TM/12TM fusion protein RD1_RS18815 77af8654ec09c31715d27fb5b92c9e8d 866 PANTHER PTHR33362:SF1 431 755 5.8E-235 T 23-04-2016 RD1_RS18815 77af8654ec09c31715d27fb5b92c9e8d 866 PANTHER PTHR33362:SF1 2 356 5.8E-235 T 23-04-2016 RD1_RS14655 157436f4f907f8a6dc390e5bea9ea5b1 152 PANTHER PTHR23091:SF264 3 152 4.6E-21 T 23-04-2016 RD1_RS14655 157436f4f907f8a6dc390e5bea9ea5b1 152 Pfam PF13673 Acetyltransferase (GNAT) domain 52 140 1.7E-11 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS14655 157436f4f907f8a6dc390e5bea9ea5b1 152 PANTHER PTHR23091 3 152 4.6E-21 T 23-04-2016 RD1_RS14655 157436f4f907f8a6dc390e5bea9ea5b1 152 Gene3D G3DSA:3.40.630.30 4 151 1.0E-25 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS14655 157436f4f907f8a6dc390e5bea9ea5b1 152 SUPERFAMILY SSF55729 5 150 2.03E-26 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS14175 1a95bf5fe96cbb474a8b14da40de7ad8 424 TIGRFAM TIGR02629 L_rham_iso_rhiz: L-rhamnose catabolism isomerase 7 415 1.0E-234 T 23-04-2016 IPR013451 L-rhamnose catabolism isomerase KEGG: 00040+5.3.1.-|KEGG: 00052+5.3.1.- RD1_RS14175 1a95bf5fe96cbb474a8b14da40de7ad8 424 ProDom PD042532 ISOMERASE L-RHAMNOSE METAL-BINDING METABOLISM RHAMNOSE MANGANESE ENZYME KINASE 3D-STRUCTURE RHAA/RHAB 141 377 0.004 T 23-04-2016 RD1_RS14175 1a95bf5fe96cbb474a8b14da40de7ad8 424 PANTHER PTHR30268 13 415 1.7E-104 T 23-04-2016 RD1_RS14175 1a95bf5fe96cbb474a8b14da40de7ad8 424 Gene3D G3DSA:3.20.20.150 10 413 6.5E-82 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS14175 1a95bf5fe96cbb474a8b14da40de7ad8 424 SUPERFAMILY SSF51658 48 401 7.19E-79 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS13710 0263b48ad817b3c6a96a7aac7282069c 120 SUPERFAMILY SSF52833 2 104 3.56E-33 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS13710 0263b48ad817b3c6a96a7aac7282069c 120 Gene3D G3DSA:3.40.30.10 7 101 3.9E-33 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS13710 0263b48ad817b3c6a96a7aac7282069c 120 PIRSF PIRSF005894 1 108 8.2E-48 T 23-04-2016 IPR014434 Monothiol glutaredoxin RD1_RS13710 0263b48ad817b3c6a96a7aac7282069c 120 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 5 101 2.7E-45 T 23-04-2016 IPR004480 Monothiol glutaredoxin-related RD1_RS13710 0263b48ad817b3c6a96a7aac7282069c 120 Pfam PF00462 Glutaredoxin 17 81 3.7E-18 T 23-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RD1_RS13710 0263b48ad817b3c6a96a7aac7282069c 120 PANTHER PTHR10293 2 118 4.6E-61 T 23-04-2016 IPR004480 Monothiol glutaredoxin-related RD1_RS00950 bc36c443ac61e97b8f984a2518d0c226 135 Pfam PF03724 META domain 23 129 1.2E-26 T 23-04-2016 IPR005184 Domain of unknown function DUF306, Meta/HslJ RD1_RS00950 bc36c443ac61e97b8f984a2518d0c226 135 PANTHER PTHR35535 19 135 2.4E-18 T 23-04-2016 RD1_RS03220 a673974c64b6920b0bb5139525aea23a 217 SUPERFAMILY SSF53254 1 212 2.36E-27 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RD1_RS03220 a673974c64b6920b0bb5139525aea23a 217 Gene3D G3DSA:3.40.50.1240 2 213 2.2E-21 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RD1_RS03220 a673974c64b6920b0bb5139525aea23a 217 PANTHER PTHR20935:SF1 1 65 1.3E-13 T 23-04-2016 RD1_RS03220 a673974c64b6920b0bb5139525aea23a 217 PANTHER PTHR20935:SF1 91 214 1.3E-13 T 23-04-2016 RD1_RS03220 a673974c64b6920b0bb5139525aea23a 217 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 187 1.2E-17 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RD1_RS03220 a673974c64b6920b0bb5139525aea23a 217 PANTHER PTHR20935 1 65 1.3E-13 T 23-04-2016 RD1_RS03220 a673974c64b6920b0bb5139525aea23a 217 PANTHER PTHR20935 91 214 1.3E-13 T 23-04-2016 RD1_RS03220 a673974c64b6920b0bb5139525aea23a 217 SMART SM00855 3 160 1.8E-7 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RD1_RS01985 dea76e854897069a33db1ef078500d83 237 PANTHER PTHR11953:SF0 1 235 4.4E-70 T 23-04-2016 RD1_RS01985 dea76e854897069a33db1ef078500d83 237 Gene3D G3DSA:3.30.230.70 8 235 2.9E-33 T 23-04-2016 IPR027408 PNPase/RNase PH domain RD1_RS01985 dea76e854897069a33db1ef078500d83 237 PANTHER PTHR11953 1 235 4.4E-70 T 23-04-2016 RD1_RS01985 dea76e854897069a33db1ef078500d83 237 Hamap MF_00564 Ribonuclease PH [rph]. 1 237 45.692 T 23-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 RD1_RS01985 dea76e854897069a33db1ef078500d83 237 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 235 1.3E-107 T 23-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 RD1_RS01985 dea76e854897069a33db1ef078500d83 237 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 23-04-2016 IPR018336 Ribonuclease PH, conserved site RD1_RS01985 dea76e854897069a33db1ef078500d83 237 Pfam PF03725 3' exoribonuclease family, domain 2 157 224 3.8E-10 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RD1_RS01985 dea76e854897069a33db1ef078500d83 237 SUPERFAMILY SSF54211 1 181 3.09E-45 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS01985 dea76e854897069a33db1ef078500d83 237 SUPERFAMILY SSF55666 154 235 1.23E-22 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RD1_RS01985 dea76e854897069a33db1ef078500d83 237 Pfam PF01138 3' exoribonuclease family, domain 1 10 139 1.2E-21 T 23-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RD1_RS00830 4927875948d63c9d76366b19bb1a81f0 451 Gene3D G3DSA:1.10.530.10 126 183 1.1E-56 T 23-04-2016 RD1_RS00830 4927875948d63c9d76366b19bb1a81f0 451 Gene3D G3DSA:1.10.530.10 265 379 1.1E-56 T 23-04-2016 RD1_RS00830 4927875948d63c9d76366b19bb1a81f0 451 PANTHER PTHR30163 71 451 1.8E-152 T 23-04-2016 IPR011757 Lytic transglycosylase MltB RD1_RS00830 4927875948d63c9d76366b19bb1a81f0 451 PANTHER PTHR30163:SF2 71 451 1.8E-152 T 23-04-2016 RD1_RS00830 4927875948d63c9d76366b19bb1a81f0 451 SUPERFAMILY SSF53955 73 381 2.62E-101 T 23-04-2016 IPR023346 Lysozyme-like domain RD1_RS00830 4927875948d63c9d76366b19bb1a81f0 451 Gene3D G3DSA:1.10.101.10 397 451 1.8E-16 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS00830 4927875948d63c9d76366b19bb1a81f0 451 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 82 378 4.3E-115 T 23-04-2016 IPR011970 Lytic murein transglycosylase RD1_RS00830 4927875948d63c9d76366b19bb1a81f0 451 SUPERFAMILY SSF47090 381 451 3.14E-17 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS00830 4927875948d63c9d76366b19bb1a81f0 451 Pfam PF01471 Putative peptidoglycan binding domain 397 450 1.4E-13 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS00830 4927875948d63c9d76366b19bb1a81f0 451 Pfam PF13406 Transglycosylase SLT domain 83 374 5.9E-110 T 23-04-2016 IPR031304 Transglycosylase SLT domain 2 RD1_RS15010 5338b48d1c65563596bcfe7023a112eb 513 PANTHER PTHR22773:SF40 3 506 2.5E-200 T 23-04-2016 RD1_RS15010 5338b48d1c65563596bcfe7023a112eb 513 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 5 495 6.8E-184 T 23-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 RD1_RS15010 5338b48d1c65563596bcfe7023a112eb 513 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 335 354 2.2E-48 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RD1_RS15010 5338b48d1c65563596bcfe7023a112eb 513 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 136 155 2.2E-48 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RD1_RS15010 5338b48d1c65563596bcfe7023a112eb 513 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 387 413 2.2E-48 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RD1_RS15010 5338b48d1c65563596bcfe7023a112eb 513 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 166 190 2.2E-48 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RD1_RS15010 5338b48d1c65563596bcfe7023a112eb 513 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 247 271 2.2E-48 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RD1_RS15010 5338b48d1c65563596bcfe7023a112eb 513 PANTHER PTHR22773 3 506 2.5E-200 T 23-04-2016 RD1_RS15010 5338b48d1c65563596bcfe7023a112eb 513 Pfam PF00361 Proton-conducting membrane transporter 130 429 1.9E-94 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RD1_RS18780 20121cb6ea029fa061887187cba3986e 259 Pfam PF01614 Bacterial transcriptional regulator 132 254 1.6E-29 T 23-04-2016 IPR014757 Transcription regulator IclR, C-terminal RD1_RS18780 20121cb6ea029fa061887187cba3986e 259 SUPERFAMILY SSF55781 71 257 1.18E-46 T 23-04-2016 IPR029016 GAF domain-like RD1_RS18780 20121cb6ea029fa061887187cba3986e 259 Gene3D G3DSA:1.10.10.10 13 76 4.5E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18780 20121cb6ea029fa061887187cba3986e 259 PANTHER PTHR30136 1 257 1.1E-50 T 23-04-2016 RD1_RS18780 20121cb6ea029fa061887187cba3986e 259 Gene3D G3DSA:3.30.450.40 94 257 7.0E-51 T 23-04-2016 IPR029016 GAF domain-like RD1_RS18780 20121cb6ea029fa061887187cba3986e 259 SMART SM00346 13 103 4.1E-5 T 23-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RD1_RS18780 20121cb6ea029fa061887187cba3986e 259 SUPERFAMILY SSF46785 13 84 1.29E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS12595 0bd270d56982f70052f8207c8b04605b 213 PANTHER PTHR13887 1 213 9.3E-57 T 23-04-2016 RD1_RS12595 0bd270d56982f70052f8207c8b04605b 213 Pfam PF01323 DSBA-like thioredoxin domain 6 204 9.4E-41 T 23-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 RD1_RS12595 0bd270d56982f70052f8207c8b04605b 213 Gene3D G3DSA:3.40.30.10 2 208 3.9E-47 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS12595 0bd270d56982f70052f8207c8b04605b 213 SUPERFAMILY SSF52833 4 209 1.82E-51 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS12595 0bd270d56982f70052f8207c8b04605b 213 PANTHER PTHR13887:SF10 1 213 9.3E-57 T 23-04-2016 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 SUPERFAMILY SSF55874 423 584 1.57E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 Gene3D G3DSA:3.40.50.2300 612 741 3.1E-15 T 23-04-2016 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 Gene3D G3DSA:3.30.450.20 199 314 5.9E-6 T 23-04-2016 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 SMART SM00448 610 724 2.5E-8 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 PANTHER PTHR24423:SF439 279 314 1.9E-111 T 23-04-2016 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 PANTHER PTHR24423:SF439 200 261 1.9E-111 T 23-04-2016 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 PANTHER PTHR24423:SF439 347 725 1.9E-111 T 23-04-2016 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 PANTHER PTHR24423:SF439 11 24 1.9E-111 T 23-04-2016 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 480 584 1.6E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 Gene3D G3DSA:3.30.565.10 440 586 8.9E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 SMART SM00387 478 588 9.1E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 Pfam PF12860 PAS fold 208 320 2.1E-20 T 23-04-2016 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 Gene3D G3DSA:1.10.287.130 360 429 5.1E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 Pfam PF00072 Response regulator receiver domain 612 724 4.8E-8 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 SUPERFAMILY SSF52172 612 735 1.34E-15 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 Pfam PF00512 His Kinase A (phospho-acceptor) domain 368 432 9.6E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 SUPERFAMILY SSF47384 352 433 1.67E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 PANTHER PTHR24423 279 314 1.9E-111 T 23-04-2016 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 PANTHER PTHR24423 200 261 1.9E-111 T 23-04-2016 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 PANTHER PTHR24423 347 725 1.9E-111 T 23-04-2016 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 PANTHER PTHR24423 11 24 1.9E-111 T 23-04-2016 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 PRINTS PR00344 Bacterial sensor protein C-terminal signature 572 585 1.89E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 PRINTS PR00344 Bacterial sensor protein C-terminal signature 515 529 1.89E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 PRINTS PR00344 Bacterial sensor protein C-terminal signature 548 566 1.89E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 PRINTS PR00344 Bacterial sensor protein C-terminal signature 533 543 1.89E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS04045 c07f3e0fc9bfd5e1e7e27e92014aacf9 752 SMART SM00388 368 433 4.6E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS13155 371579e7ebf44abca3c5f8461f22d1a0 208 PANTHER PTHR10381 1 204 7.7E-137 T 23-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RD1_RS13155 371579e7ebf44abca3c5f8461f22d1a0 208 SUPERFAMILY SSF52096 18 201 1.15E-69 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS13155 371579e7ebf44abca3c5f8461f22d1a0 208 PANTHER PTHR10381:SF11 1 204 7.7E-137 T 23-04-2016 RD1_RS13155 371579e7ebf44abca3c5f8461f22d1a0 208 PRINTS PR00127 Clp protease catalytic subunit P signature 98 115 8.4E-48 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RD1_RS13155 371579e7ebf44abca3c5f8461f22d1a0 208 PRINTS PR00127 Clp protease catalytic subunit P signature 67 87 8.4E-48 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RD1_RS13155 371579e7ebf44abca3c5f8461f22d1a0 208 PRINTS PR00127 Clp protease catalytic subunit P signature 176 195 8.4E-48 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RD1_RS13155 371579e7ebf44abca3c5f8461f22d1a0 208 PRINTS PR00127 Clp protease catalytic subunit P signature 27 42 8.4E-48 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RD1_RS13155 371579e7ebf44abca3c5f8461f22d1a0 208 PRINTS PR00127 Clp protease catalytic subunit P signature 119 138 8.4E-48 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RD1_RS13155 371579e7ebf44abca3c5f8461f22d1a0 208 Pfam PF00574 Clp protease 20 200 1.8E-81 T 23-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RD1_RS13155 371579e7ebf44abca3c5f8461f22d1a0 208 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 120 133 - T 23-04-2016 IPR033135 ClpP, histidine active site RD1_RS13155 371579e7ebf44abca3c5f8461f22d1a0 208 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 98 109 - T 23-04-2016 IPR018215 ClpP, Ser active site RD1_RS13155 371579e7ebf44abca3c5f8461f22d1a0 208 Gene3D G3DSA:3.90.226.10 11 201 6.5E-83 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS13155 371579e7ebf44abca3c5f8461f22d1a0 208 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 11 201 40.926 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RD1_RS13695 46238ffef007d64800bf0b962dba996f 322 Pfam PF02625 XdhC and CoxI family 14 81 6.0E-24 T 23-04-2016 IPR003777 XdhC- CoxI RD1_RS13695 46238ffef007d64800bf0b962dba996f 322 PANTHER PTHR30388 5 321 1.7E-101 T 23-04-2016 RD1_RS13695 46238ffef007d64800bf0b962dba996f 322 PANTHER PTHR30388:SF4 5 321 1.7E-101 T 23-04-2016 RD1_RS13695 46238ffef007d64800bf0b962dba996f 322 Pfam PF13478 XdhC Rossmann domain 173 314 2.5E-40 T 23-04-2016 IPR027051 XdhC Rossmann domain RD1_RS12075 388f528c882163467651c41cfcc47514 402 SUPERFAMILY SSF53901 209 401 8.11E-65 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS12075 388f528c882163467651c41cfcc47514 402 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 247 359 1.2E-32 T 23-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal RD1_RS12075 388f528c882163467651c41cfcc47514 402 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 238 1.3E-44 T 23-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RD1_RS12075 388f528c882163467651c41cfcc47514 402 PANTHER PTHR11712 1 401 3.1E-133 T 23-04-2016 RD1_RS12075 388f528c882163467651c41cfcc47514 402 Gene3D G3DSA:3.40.47.10 1 252 5.6E-59 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS12075 388f528c882163467651c41cfcc47514 402 Gene3D G3DSA:3.40.47.10 255 401 8.3E-55 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS12075 388f528c882163467651c41cfcc47514 402 SMART SM00825 Beta-ketoacyl synthase 4 402 9.8E-12 T 23-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RD1_RS12075 388f528c882163467651c41cfcc47514 402 SUPERFAMILY SSF53901 1 244 1.89E-62 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS12075 388f528c882163467651c41cfcc47514 402 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 153 169 - T 23-04-2016 IPR018201 Beta-ketoacyl synthase, active site RD1_RS14000 6665f4d7990e7691a74f1ef160c630de 213 Pfam PF01786 Alternative oxidase 14 207 7.1E-82 T 23-04-2016 IPR002680 Alternative oxidase GO:0009916|GO:0055114 RD1_RS14000 6665f4d7990e7691a74f1ef160c630de 213 PANTHER PTHR31803 14 207 1.9E-101 T 23-04-2016 RD1_RS14000 6665f4d7990e7691a74f1ef160c630de 213 PIRSF PIRSF005229 1 213 2.0E-101 T 23-04-2016 IPR002680 Alternative oxidase GO:0009916|GO:0055114 RD1_RS14000 6665f4d7990e7691a74f1ef160c630de 213 PANTHER PTHR31803:SF3 14 207 1.9E-101 T 23-04-2016 IPR002680 Alternative oxidase GO:0009916|GO:0055114 RD1_RS12095 bf5157f2860a5dca2ba94671276e9358 336 PANTHER PTHR11795 15 288 9.1E-56 T 23-04-2016 RD1_RS12095 bf5157f2860a5dca2ba94671276e9358 336 PANTHER PTHR11795 310 331 9.1E-56 T 23-04-2016 RD1_RS12095 bf5157f2860a5dca2ba94671276e9358 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 17 323 1.9E-42 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS12095 bf5157f2860a5dca2ba94671276e9358 336 PANTHER PTHR11795:SF371 15 288 9.1E-56 T 23-04-2016 RD1_RS12095 bf5157f2860a5dca2ba94671276e9358 336 PANTHER PTHR11795:SF371 310 331 9.1E-56 T 23-04-2016 RD1_RS14030 dd386ac8241ed15cb2bbe6de2269ee84 240 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 33 236 27.74 T 23-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RD1_RS14030 dd386ac8241ed15cb2bbe6de2269ee84 240 Gene3D G3DSA:3.40.50.150 15 237 9.9E-73 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS14030 dd386ac8241ed15cb2bbe6de2269ee84 240 PIRSF PIRSF005461 17 240 5.5E-67 T 23-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RD1_RS14030 dd386ac8241ed15cb2bbe6de2269ee84 240 Pfam PF01728 FtsJ-like methyltransferase 53 236 1.1E-52 T 23-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 RD1_RS14030 dd386ac8241ed15cb2bbe6de2269ee84 240 SUPERFAMILY SSF53335 52 237 9.76E-38 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS14030 dd386ac8241ed15cb2bbe6de2269ee84 240 PANTHER PTHR10920 23 238 4.7E-90 T 23-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RD1_RS14850 74a6fcff18648d8602b28ecb7e5967e3 302 Gene3D G3DSA:3.40.50.300 32 216 1.7E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14850 74a6fcff18648d8602b28ecb7e5967e3 302 Pfam PF07728 AAA domain (dynein-related subfamily) 39 193 2.2E-10 T 23-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RD1_RS14850 74a6fcff18648d8602b28ecb7e5967e3 302 SUPERFAMILY SSF52540 36 283 3.01E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14850 74a6fcff18648d8602b28ecb7e5967e3 302 SMART SM00382 35 213 1.5E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS14850 74a6fcff18648d8602b28ecb7e5967e3 302 PANTHER PTHR22908 7 295 1.2E-108 T 23-04-2016 RD1_RS14850 74a6fcff18648d8602b28ecb7e5967e3 302 PANTHER PTHR22908:SF67 7 295 1.2E-108 T 23-04-2016 RD1_RS07375 4c476398eb88f2e08b7f1e46d694e33a 225 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS07375 4c476398eb88f2e08b7f1e46d694e33a 225 Gene3D G3DSA:3.40.50.300 1 202 2.6E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07375 4c476398eb88f2e08b7f1e46d694e33a 225 SMART SM00382 26 212 6.7E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS07375 4c476398eb88f2e08b7f1e46d694e33a 225 PANTHER PTHR24220:SF470 3 215 3.4E-76 T 23-04-2016 RD1_RS07375 4c476398eb88f2e08b7f1e46d694e33a 225 PANTHER PTHR24220 3 215 3.4E-76 T 23-04-2016 RD1_RS07375 4c476398eb88f2e08b7f1e46d694e33a 225 SUPERFAMILY SSF52540 1 204 7.88E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07375 4c476398eb88f2e08b7f1e46d694e33a 225 Pfam PF00005 ABC transporter 18 164 1.1E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS13685 799ca019939acce80556eb1b75b37517 161 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 65 3.4E-6 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS13685 799ca019939acce80556eb1b75b37517 161 Gene3D G3DSA:3.10.20.30 2 75 6.4E-26 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS13685 799ca019939acce80556eb1b75b37517 161 Gene3D G3DSA:1.10.150.120 76 154 3.7E-36 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RD1_RS13685 799ca019939acce80556eb1b75b37517 161 SUPERFAMILY SSF47741 86 153 4.58E-34 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RD1_RS13685 799ca019939acce80556eb1b75b37517 161 PANTHER PTHR11908:SF82 1 146 2.9E-40 T 23-04-2016 RD1_RS13685 799ca019939acce80556eb1b75b37517 161 SUPERFAMILY SSF54292 3 79 9.7E-23 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS13685 799ca019939acce80556eb1b75b37517 161 PANTHER PTHR11908 1 146 2.9E-40 T 23-04-2016 RD1_RS13685 799ca019939acce80556eb1b75b37517 161 Pfam PF01799 [2Fe-2S] binding domain 74 147 1.1E-31 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RD1_RS07735 401035106ef49761602b3d356bb5bcac 540 SUPERFAMILY SSF52467 157 341 3.08E-34 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS07735 401035106ef49761602b3d356bb5bcac 540 SUPERFAMILY SSF52518 5 178 5.4E-43 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS07735 401035106ef49761602b3d356bb5bcac 540 Gene3D G3DSA:3.40.50.1220 184 335 2.8E-36 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS07735 401035106ef49761602b3d356bb5bcac 540 PANTHER PTHR18968 6 536 3.9E-110 T 23-04-2016 RD1_RS07735 401035106ef49761602b3d356bb5bcac 540 Gene3D G3DSA:3.40.50.970 362 534 2.1E-44 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS07735 401035106ef49761602b3d356bb5bcac 540 SUPERFAMILY SSF52518 361 533 1.92E-43 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS07735 401035106ef49761602b3d356bb5bcac 540 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 8 172 5.5E-43 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RD1_RS07735 401035106ef49761602b3d356bb5bcac 540 Gene3D G3DSA:3.40.50.970 3 179 8.9E-52 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS07735 401035106ef49761602b3d356bb5bcac 540 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 383 528 2.0E-29 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RD1_RS07735 401035106ef49761602b3d356bb5bcac 540 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 329 4.1E-26 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RD1_RS03635 f7264bb373d1058537e0691018c370f1 470 PIRSF PIRSF006446 3 452 1.1E-195 T 23-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 RD1_RS03635 f7264bb373d1058537e0691018c370f1 470 PANTHER PTHR30365 1 458 5.7E-242 T 23-04-2016 RD1_RS03635 f7264bb373d1058537e0691018c370f1 470 PANTHER PTHR30365:SF8 1 458 5.7E-242 T 23-04-2016 RD1_RS03635 f7264bb373d1058537e0691018c370f1 470 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 10 438 9.9E-159 T 23-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 RD1_RS03455 e8b42a4f9455b04f026118bd767c4850 227 Pfam PF00005 ABC transporter 15 144 1.1E-20 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS03455 e8b42a4f9455b04f026118bd767c4850 227 SUPERFAMILY SSF52540 6 201 6.59E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03455 e8b42a4f9455b04f026118bd767c4850 227 PANTHER PTHR24220 4 209 7.9E-52 T 23-04-2016 RD1_RS03455 e8b42a4f9455b04f026118bd767c4850 227 ProSitePatterns PS00211 ABC transporters family signature. 117 131 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS03455 e8b42a4f9455b04f026118bd767c4850 227 SMART SM00382 22 192 1.5E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS03455 e8b42a4f9455b04f026118bd767c4850 227 Gene3D G3DSA:3.40.50.300 9 202 7.3E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04340 81434741786c53b0c54038d5fbd8e297 395 SUPERFAMILY SSF55729 190 362 3.79E-41 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS04340 81434741786c53b0c54038d5fbd8e297 395 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 14 388 1.5E-157 T 23-04-2016 IPR007434 Peptidogalycan biosysnthesis/recognition RD1_RS04340 81434741786c53b0c54038d5fbd8e297 395 Gene3D G3DSA:3.40.630.30 188 338 5.1E-25 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS04340 81434741786c53b0c54038d5fbd8e297 395 PANTHER PTHR31384 61 324 4.6E-60 T 23-04-2016 RD1_RS01555 e85e7f11a7127a9b6fd0d153e0ee2abf 446 Gene3D G3DSA:3.30.750.44 49 105 8.4E-10 T 23-04-2016 RD1_RS01555 e85e7f11a7127a9b6fd0d153e0ee2abf 446 SUPERFAMILY SSF52096 32 118 5.14E-82 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS01555 e85e7f11a7127a9b6fd0d153e0ee2abf 446 SUPERFAMILY SSF52096 191 370 5.14E-82 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS01555 e85e7f11a7127a9b6fd0d153e0ee2abf 446 SMART SM00228 100 171 1.1E-14 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS01555 e85e7f11a7127a9b6fd0d153e0ee2abf 446 SMART SM00245 173 366 3.4E-68 T 23-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 RD1_RS01555 e85e7f11a7127a9b6fd0d153e0ee2abf 446 SUPERFAMILY SSF50156 91 183 6.22E-20 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS01555 e85e7f11a7127a9b6fd0d153e0ee2abf 446 Pfam PF03572 Peptidase family S41 199 365 1.2E-52 T 23-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 RD1_RS01555 e85e7f11a7127a9b6fd0d153e0ee2abf 446 Pfam PF13180 PDZ domain 100 179 4.4E-12 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS01555 e85e7f11a7127a9b6fd0d153e0ee2abf 446 PANTHER PTHR32060 46 438 1.9E-111 T 23-04-2016 RD1_RS01555 e85e7f11a7127a9b6fd0d153e0ee2abf 446 Gene3D G3DSA:2.30.42.10 106 182 2.5E-28 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS01555 e85e7f11a7127a9b6fd0d153e0ee2abf 446 Gene3D G3DSA:3.90.226.10 183 368 2.6E-65 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS01555 e85e7f11a7127a9b6fd0d153e0ee2abf 446 Gene3D G3DSA:3.90.226.10 417 438 2.6E-65 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS01555 e85e7f11a7127a9b6fd0d153e0ee2abf 446 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 55 381 1.9E-100 T 23-04-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 Gene3D G3DSA:3.30.450.20 106 182 5.2E-4 T 23-04-2016 RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 SUPERFAMILY SSF103190 67 187 2.16E-10 T 23-04-2016 IPR029151 Periplasmic sensor domain-like RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 PANTHER PTHR24423:SF485 337 575 7.8E-63 T 23-04-2016 RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 PANTHER PTHR24423:SF485 1 36 7.8E-63 T 23-04-2016 RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 561 574 8.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 508 522 8.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 534 8.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 537 555 8.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 Pfam PF00512 His Kinase A (phospho-acceptor) domain 360 426 2.4E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 470 574 8.9E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 SMART SM00388 360 428 1.2E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 PANTHER PTHR24423 337 575 7.8E-63 T 23-04-2016 RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 PANTHER PTHR24423 1 36 7.8E-63 T 23-04-2016 RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 SMART SM00387 470 577 5.0E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 SUPERFAMILY SSF55874 422 578 2.23E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 SUPERFAMILY SSF47384 348 426 1.18E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 Gene3D G3DSA:3.30.565.10 432 577 2.0E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 PIRSF PIRSF036431 3 584 1.6E-159 T 23-04-2016 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) RD1_RS10455 58d366a766ee0deaa70629a2a5bec6f8 586 Gene3D G3DSA:1.10.287.130 356 424 6.2E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS00465 994ba5367a0736d358f7e2c23e940aae 331 Pfam PF00124 Photosynthetic reaction centre protein 56 307 4.7E-93 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00465 994ba5367a0736d358f7e2c23e940aae 331 SUPERFAMILY SSF81483 5 313 9.55E-121 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00465 994ba5367a0736d358f7e2c23e940aae 331 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 205 231 1.5E-37 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00465 994ba5367a0736d358f7e2c23e940aae 331 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 149 171 1.5E-37 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00465 994ba5367a0736d358f7e2c23e940aae 331 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 116 144 1.5E-37 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00465 994ba5367a0736d358f7e2c23e940aae 331 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 265 290 1.5E-37 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00465 994ba5367a0736d358f7e2c23e940aae 331 TIGRFAM TIGR01115 pufM: photosynthetic reaction center M subunit 4 309 7.9E-164 T 23-04-2016 IPR005781 Photosynthetic reaction centre, M subunit GO:0019684|GO:0030077|GO:0045156 RD1_RS00465 994ba5367a0736d358f7e2c23e940aae 331 ProSitePatterns PS00244 Photosynthetic reaction center proteins signature. 199 225 - T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00465 994ba5367a0736d358f7e2c23e940aae 331 PANTHER PTHR33149 99 284 3.1E-24 T 23-04-2016 RD1_RS00465 994ba5367a0736d358f7e2c23e940aae 331 Gene3D G3DSA:1.20.85.10 5 147 2.7E-60 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00465 994ba5367a0736d358f7e2c23e940aae 331 Gene3D G3DSA:1.20.85.10 148 306 1.1E-60 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00465 994ba5367a0736d358f7e2c23e940aae 331 PANTHER PTHR33149:SF2 99 284 3.1E-24 T 23-04-2016 RD1_RS16215 7d21815829688113f01f902e0819852b 310 SUPERFAMILY SSF52374 20 175 7.88E-34 T 23-04-2016 RD1_RS16215 7d21815829688113f01f902e0819852b 310 Pfam PF06574 FAD synthetase 12 165 1.2E-47 T 23-04-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 RD1_RS16215 7d21815829688113f01f902e0819852b 310 SUPERFAMILY SSF82114 173 308 2.83E-41 T 23-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 RD1_RS16215 7d21815829688113f01f902e0819852b 310 PIRSF PIRSF004491 1 310 1.3E-88 T 23-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 RD1_RS16215 7d21815829688113f01f902e0819852b 310 SMART SM00904 181 308 1.3E-54 T 23-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 RD1_RS16215 7d21815829688113f01f902e0819852b 310 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 20 307 2.7E-70 T 23-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 RD1_RS16215 7d21815829688113f01f902e0819852b 310 Gene3D G3DSA:2.40.30.30 178 308 1.2E-40 T 23-04-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 RD1_RS16215 7d21815829688113f01f902e0819852b 310 PANTHER PTHR22749 1 308 1.5E-105 T 23-04-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 RD1_RS16215 7d21815829688113f01f902e0819852b 310 PANTHER PTHR22749:SF0 1 308 1.5E-105 T 23-04-2016 RD1_RS16215 7d21815829688113f01f902e0819852b 310 Pfam PF01687 Riboflavin kinase 182 307 6.9E-34 T 23-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 RD1_RS16215 7d21815829688113f01f902e0819852b 310 Gene3D G3DSA:3.40.50.620 1 177 4.4E-56 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS04770 9c2dbd6b10e3edb3b5dfdb65744b1895 152 Pfam PF01037 Lrp/AsnC ligand binding domain 69 143 1.3E-23 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS04770 9c2dbd6b10e3edb3b5dfdb65744b1895 152 PANTHER PTHR30154:SF28 1 152 2.1E-59 T 23-04-2016 RD1_RS04770 9c2dbd6b10e3edb3b5dfdb65744b1895 152 Gene3D G3DSA:1.10.10.10 4 55 2.5E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04770 9c2dbd6b10e3edb3b5dfdb65744b1895 152 Gene3D G3DSA:3.30.70.920 56 140 9.4E-29 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS04770 9c2dbd6b10e3edb3b5dfdb65744b1895 152 SMART SM00344 3 112 2.1E-44 T 23-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RD1_RS04770 9c2dbd6b10e3edb3b5dfdb65744b1895 152 SUPERFAMILY SSF46785 3 93 2.49E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04770 9c2dbd6b10e3edb3b5dfdb65744b1895 152 PANTHER PTHR30154 1 152 2.1E-59 T 23-04-2016 RD1_RS04770 9c2dbd6b10e3edb3b5dfdb65744b1895 152 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 50 1.6E-20 T 23-04-2016 RD1_RS04770 9c2dbd6b10e3edb3b5dfdb65744b1895 152 ProSitePatterns PS00519 AsnC-type HTH domain signature. 21 47 - T 23-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RD1_RS04770 9c2dbd6b10e3edb3b5dfdb65744b1895 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 2.4E-14 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS04770 9c2dbd6b10e3edb3b5dfdb65744b1895 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 2.4E-14 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS04770 9c2dbd6b10e3edb3b5dfdb65744b1895 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 2.4E-14 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS04770 9c2dbd6b10e3edb3b5dfdb65744b1895 152 SUPERFAMILY SSF54909 64 152 1.61E-21 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS01830 a9f8cd45aaf00545c55b61873464fda8 248 PANTHER PTHR10108 8 241 4.7E-76 T 23-04-2016 RD1_RS01830 a9f8cd45aaf00545c55b61873464fda8 248 PANTHER PTHR10108:SF910 8 241 4.7E-76 T 23-04-2016 RD1_RS01830 a9f8cd45aaf00545c55b61873464fda8 248 SUPERFAMILY SSF53335 7 229 2.05E-46 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS01830 a9f8cd45aaf00545c55b61873464fda8 248 Pfam PF13489 Methyltransferase domain 56 215 1.0E-21 T 23-04-2016 RD1_RS01830 a9f8cd45aaf00545c55b61873464fda8 248 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 10 247 39.231 T 23-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 RD1_RS01830 a9f8cd45aaf00545c55b61873464fda8 248 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 12 241 4.9E-86 T 23-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 RD1_RS01830 a9f8cd45aaf00545c55b61873464fda8 248 Gene3D G3DSA:3.40.50.150 24 233 3.5E-43 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS11750 c92def13f6dc9960b362eb59b5e48f1f 52 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 4 48 3.7E-8 T 23-04-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 RD1_RS11750 c92def13f6dc9960b362eb59b5e48f1f 52 Pfam PF04995 Heme exporter protein D (CcmD) 6 47 4.6E-12 T 23-04-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 RD1_RS16225 0abffe604d438cfcde4661f2d0371db4 345 Pfam PF01212 Beta-eliminating lyase 3 289 2.6E-55 T 23-04-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 RD1_RS16225 0abffe604d438cfcde4661f2d0371db4 345 PANTHER PTHR10289:SF8 4 343 7.6E-97 T 23-04-2016 RD1_RS16225 0abffe604d438cfcde4661f2d0371db4 345 SUPERFAMILY SSF53383 1 344 1.27E-90 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS16225 0abffe604d438cfcde4661f2d0371db4 345 PANTHER PTHR10289 4 343 7.6E-97 T 23-04-2016 RD1_RS16225 0abffe604d438cfcde4661f2d0371db4 345 Gene3D G3DSA:3.40.640.10 2 248 8.4E-56 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS16225 0abffe604d438cfcde4661f2d0371db4 345 Gene3D G3DSA:3.90.1150.10 254 343 2.7E-14 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS09810 9477b9f9642fd173b5b4dadde58f5204 282 SMART SM00858 48 116 1.1E-5 T 23-04-2016 IPR013974 SAF domain RD1_RS09810 9477b9f9642fd173b5b4dadde58f5204 282 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 123 226 1.2E-25 T 23-04-2016 IPR031571 Flp pilus assembly protein RcpC/CpaB domain RD1_RS09810 9477b9f9642fd173b5b4dadde58f5204 282 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 7 273 2.3E-63 T 23-04-2016 IPR017592 Pilus assembly, Flp-type CpaB RD1_RS15330 521431ddc44a23a9b80acc3298e9e4fa 85 Gene3D G3DSA:3.30.70.1500 1 82 2.6E-24 T 23-04-2016 RD1_RS15330 521431ddc44a23a9b80acc3298e9e4fa 85 PIRSF PIRSF003113 1 84 6.4E-23 T 23-04-2016 IPR002634 BolA protein RD1_RS15330 521431ddc44a23a9b80acc3298e9e4fa 85 Pfam PF01722 BolA-like protein 11 82 2.6E-23 T 23-04-2016 IPR002634 BolA protein RD1_RS15330 521431ddc44a23a9b80acc3298e9e4fa 85 PANTHER PTHR12735 7 81 2.6E-19 T 23-04-2016 RD1_RS15330 521431ddc44a23a9b80acc3298e9e4fa 85 SUPERFAMILY SSF82657 3 81 1.57E-21 T 23-04-2016 IPR002634 BolA protein RD1_RS15330 521431ddc44a23a9b80acc3298e9e4fa 85 PANTHER PTHR12735:SF24 7 81 2.6E-19 T 23-04-2016 RD1_RS07565 60f06db167a2b296d30d9ae23331d40d 456 Pfam PF01553 Acyltransferase 144 271 3.5E-16 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RD1_RS07565 60f06db167a2b296d30d9ae23331d40d 456 PANTHER PTHR12563 38 365 1.8E-24 T 23-04-2016 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 RD1_RS07565 60f06db167a2b296d30d9ae23331d40d 456 PANTHER PTHR12563:SF14 38 365 1.8E-24 T 23-04-2016 RD1_RS07565 60f06db167a2b296d30d9ae23331d40d 456 Gene3D G3DSA:3.40.1130.10 117 284 9.5E-9 T 23-04-2016 RD1_RS07565 60f06db167a2b296d30d9ae23331d40d 456 SUPERFAMILY SSF69593 140 367 2.35E-24 T 23-04-2016 RD1_RS07565 60f06db167a2b296d30d9ae23331d40d 456 SMART SM00563 151 274 1.0E-20 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RD1_RS04555 59ec58c4ddc82b1ea03f5da080e863d2 312 PANTHER PTHR11825 15 312 5.2E-94 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS04555 59ec58c4ddc82b1ea03f5da080e863d2 312 SUPERFAMILY SSF56752 20 306 1.96E-69 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS04555 59ec58c4ddc82b1ea03f5da080e863d2 312 Pfam PF01063 Amino-transferase class IV 50 276 1.6E-39 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS04555 59ec58c4ddc82b1ea03f5da080e863d2 312 PANTHER PTHR11825:SF7 15 312 5.2E-94 T 23-04-2016 RD1_RS04555 59ec58c4ddc82b1ea03f5da080e863d2 312 Gene3D G3DSA:3.30.470.10 22 136 4.2E-31 T 23-04-2016 RD1_RS04555 59ec58c4ddc82b1ea03f5da080e863d2 312 Gene3D G3DSA:3.20.10.10 141 301 1.2E-41 T 23-04-2016 RD1_RS02665 ed92cfa87b3d87ec3d882e88e0c4a07e 291 SUPERFAMILY SSF53335 39 226 2.62E-26 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS02665 ed92cfa87b3d87ec3d882e88e0c4a07e 291 Pfam PF13489 Methyltransferase domain 42 160 1.8E-15 T 23-04-2016 RD1_RS02665 ed92cfa87b3d87ec3d882e88e0c4a07e 291 Gene3D G3DSA:3.40.50.150 39 173 9.9E-21 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS11235 664f3e7bd54b05b361e6c1c71a769acc 264 PANTHER PTHR30598:SF3 1 246 5.9E-81 T 23-04-2016 RD1_RS11235 664f3e7bd54b05b361e6c1c71a769acc 264 SUPERFAMILY SSF103501 1 226 9.55E-61 T 23-04-2016 IPR023234 NarG-like domain RD1_RS11235 664f3e7bd54b05b361e6c1c71a769acc 264 PANTHER PTHR30598 1 246 5.9E-81 T 23-04-2016 RD1_RS11235 664f3e7bd54b05b361e6c1c71a769acc 264 TIGRFAM TIGR00351 narI: respiratory nitrate reductase, gamma subunit 2 228 8.5E-72 T 23-04-2016 IPR003816 Nitrate reductase, gamma subunit GO:0008940|GO:0009325|GO:0055114 KEGG: 00910+1.7.99.4 RD1_RS11235 664f3e7bd54b05b361e6c1c71a769acc 264 Gene3D G3DSA:1.20.950.20 1 214 5.6E-62 T 23-04-2016 RD1_RS11235 664f3e7bd54b05b361e6c1c71a769acc 264 Pfam PF02665 Nitrate reductase gamma subunit 2 227 9.1E-80 T 23-04-2016 IPR023234 NarG-like domain RD1_RS01290 b4bde7a6044814860d71370cd7717ba3 263 PANTHER PTHR30193:SF20 1 262 1.2E-52 T 23-04-2016 RD1_RS01290 b4bde7a6044814860d71370cd7717ba3 263 SUPERFAMILY SSF161098 3 256 3.27E-51 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS01290 b4bde7a6044814860d71370cd7717ba3 263 PANTHER PTHR30193 1 262 1.2E-52 T 23-04-2016 RD1_RS01290 b4bde7a6044814860d71370cd7717ba3 263 Gene3D G3DSA:1.10.3720.10 6 260 1.4E-50 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS01290 b4bde7a6044814860d71370cd7717ba3 263 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 259 4.8E-11 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS06855 a9f9b698228e2661e674602c666c9247 493 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 30 193 2.8E-41 T 23-04-2016 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 RD1_RS06855 a9f9b698228e2661e674602c666c9247 493 PANTHER PTHR30562 1 475 1.2E-121 T 23-04-2016 RD1_RS06855 a9f9b698228e2661e674602c666c9247 493 SUPERFAMILY SSF48179 287 487 5.44E-52 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS06855 a9f9b698228e2661e674602c666c9247 493 Gene3D G3DSA:3.40.50.720 13 285 3.9E-102 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS06855 a9f9b698228e2661e674602c666c9247 493 SUPERFAMILY SSF51735 16 286 2.48E-96 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS06855 a9f9b698228e2661e674602c666c9247 493 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 222 463 3.0E-72 T 23-04-2016 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 RD1_RS06855 a9f9b698228e2661e674602c666c9247 493 PRINTS PR00084 Mannitol dehydrogenase signature 184 197 2.8E-15 T 23-04-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RD1_RS06855 a9f9b698228e2661e674602c666c9247 493 PRINTS PR00084 Mannitol dehydrogenase signature 252 267 2.8E-15 T 23-04-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RD1_RS06855 a9f9b698228e2661e674602c666c9247 493 PRINTS PR00084 Mannitol dehydrogenase signature 31 41 2.8E-15 T 23-04-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RD1_RS06855 a9f9b698228e2661e674602c666c9247 493 PRINTS PR00084 Mannitol dehydrogenase signature 223 236 2.8E-15 T 23-04-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RD1_RS06855 a9f9b698228e2661e674602c666c9247 493 PANTHER PTHR30562:SF4 1 475 1.2E-121 T 23-04-2016 RD1_RS06855 a9f9b698228e2661e674602c666c9247 493 Gene3D G3DSA:1.10.1040.10 286 488 2.6E-55 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS16210 39f08424b4bc04f369222331593a46df 147 PANTHER PTHR13078 12 131 7.8E-38 T 23-04-2016 RD1_RS16210 39f08424b4bc04f369222331593a46df 147 SUPERFAMILY SSF54637 10 144 3.46E-42 T 23-04-2016 IPR029069 HotDog domain RD1_RS16210 39f08424b4bc04f369222331593a46df 147 Pfam PF01575 MaoC like domain 21 123 1.2E-24 T 23-04-2016 IPR002539 MaoC-like domain RD1_RS16210 39f08424b4bc04f369222331593a46df 147 Gene3D G3DSA:3.10.129.10 12 142 7.4E-44 T 23-04-2016 IPR029069 HotDog domain RD1_RS04025 b04ecb09b0f8f0c9727dc28e6b49417e 224 SUPERFAMILY SSF48452 47 103 4.55E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS04025 b04ecb09b0f8f0c9727dc28e6b49417e 224 Gene3D G3DSA:1.25.40.10 47 95 2.5E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.4E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 5.4E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 5.4E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 259 4.4E-53 T 23-04-2016 RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 SUPERFAMILY SSF51735 9 260 2.63E-75 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.0E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 2.0E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.0E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.0E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.0E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.0E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 Gene3D G3DSA:3.40.50.720 5 260 6.2E-77 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 PANTHER PTHR24322:SF328 14 140 6.3E-49 T 23-04-2016 RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 PANTHER PTHR24322:SF328 156 188 6.3E-49 T 23-04-2016 RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 PANTHER PTHR24322 14 140 6.3E-49 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 PANTHER PTHR24322 156 188 6.3E-49 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS12575 cf8ebf7df60ccc5682e9c3fb43b0cc2e 261 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 10 260 4.2E-108 T 23-04-2016 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 RD1_RS17520 5cdca69f874d687c2f91020f106f06d2 209 Gene3D G3DSA:3.40.50.10230 3 206 2.8E-75 T 23-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 RD1_RS17520 5cdca69f874d687c2f91020f106f06d2 209 PANTHER PTHR32439 1 208 6.3E-66 T 23-04-2016 RD1_RS17520 5cdca69f874d687c2f91020f106f06d2 209 SUPERFAMILY SSF63965 3 207 1.01E-68 T 23-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 RD1_RS17520 5cdca69f874d687c2f91020f106f06d2 209 Pfam PF02570 Precorrin-8X methylmutase 12 206 9.9E-69 T 23-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 RD1_RS07810 671226afe4179fba7e7d49fd019f8bd9 523 Gene3D G3DSA:3.40.50.720 376 518 9.5E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS07810 671226afe4179fba7e7d49fd019f8bd9 523 PANTHER PTHR16254 8 510 5.7E-78 T 23-04-2016 RD1_RS07810 671226afe4179fba7e7d49fd019f8bd9 523 Pfam PF00999 Sodium/hydrogen exchanger family 8 343 6.0E-33 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RD1_RS07810 671226afe4179fba7e7d49fd019f8bd9 523 PANTHER PTHR16254:SF14 8 510 5.7E-78 T 23-04-2016 RD1_RS07810 671226afe4179fba7e7d49fd019f8bd9 523 Pfam PF02254 TrkA-N domain 384 496 1.4E-15 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RD1_RS07810 671226afe4179fba7e7d49fd019f8bd9 523 SUPERFAMILY SSF51735 383 511 1.73E-16 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS01070 ea08f288eabdd636d75d24b862449656 546 PIRSF PIRSF002741 22 543 1.8E-55 T 23-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RD1_RS01070 ea08f288eabdd636d75d24b862449656 546 PANTHER PTHR30290 75 538 1.2E-67 T 23-04-2016 RD1_RS01070 ea08f288eabdd636d75d24b862449656 546 Gene3D G3DSA:3.10.105.10 335 514 1.5E-30 T 23-04-2016 RD1_RS01070 ea08f288eabdd636d75d24b862449656 546 Gene3D G3DSA:3.40.190.10 220 334 4.3E-21 T 23-04-2016 RD1_RS01070 ea08f288eabdd636d75d24b862449656 546 SUPERFAMILY SSF53850 74 538 2.53E-95 T 23-04-2016 RD1_RS01070 ea08f288eabdd636d75d24b862449656 546 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 104 454 1.8E-61 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain RD1_RS01070 ea08f288eabdd636d75d24b862449656 546 Gene3D G3DSA:3.90.76.10 81 219 2.2E-27 T 23-04-2016 RD1_RS00375 df04c50a7c583990729f266269dd92a9 541 Gene3D G3DSA:3.20.20.70 53 499 1.9E-121 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS00375 df04c50a7c583990729f266269dd92a9 541 SUPERFAMILY SSF51395 15 493 1.47E-134 T 23-04-2016 RD1_RS00375 df04c50a7c583990729f266269dd92a9 541 PIRSF PIRSF006429 6 534 1.4E-160 T 23-04-2016 IPR024188 Glutamate synthase large subunit-like protein RD1_RS00375 df04c50a7c583990729f266269dd92a9 541 PANTHER PTHR11938 162 531 5.3E-86 T 23-04-2016 RD1_RS00375 df04c50a7c583990729f266269dd92a9 541 Pfam PF01645 Conserved region in glutamate synthase 161 476 9.2E-87 T 23-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RD1_RS00375 df04c50a7c583990729f266269dd92a9 541 PANTHER PTHR11938:SF50 162 531 5.3E-86 T 23-04-2016 RD1_RS00375 df04c50a7c583990729f266269dd92a9 541 PIRSF PIRSF500060 10 536 1.1E-221 T 23-04-2016 IPR027283 Glutamate synthase large subunit-like protein, bacteria RD1_RS03485 18bf59371f3c14b5e30865adece597ae 136 PANTHER PTHR32063:SF18 1 133 8.4E-33 T 23-04-2016 RD1_RS03485 18bf59371f3c14b5e30865adece597ae 136 PANTHER PTHR32063 1 133 8.4E-33 T 23-04-2016 RD1_RS03485 18bf59371f3c14b5e30865adece597ae 136 Pfam PF00873 AcrB/AcrD/AcrF family 4 130 2.5E-19 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS03485 18bf59371f3c14b5e30865adece597ae 136 Gene3D G3DSA:3.30.70.1430 40 134 5.6E-23 T 23-04-2016 RD1_RS03485 18bf59371f3c14b5e30865adece597ae 136 SUPERFAMILY SSF82693 40 132 3.03E-19 T 23-04-2016 RD1_RS01000 c47970a28bc10b0bc03a44acaeee679b 479 Pfam PF13566 Domain of unknown function (DUF4130 76 234 7.7E-39 T 23-04-2016 IPR025404 Domain of unknown function DUF4130 RD1_RS01000 c47970a28bc10b0bc03a44acaeee679b 479 SUPERFAMILY SSF52141 284 459 3.6E-52 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS01000 c47970a28bc10b0bc03a44acaeee679b 479 PANTHER PTHR33693 141 470 2.9E-115 T 23-04-2016 RD1_RS01000 c47970a28bc10b0bc03a44acaeee679b 479 PANTHER PTHR33693:SF3 141 470 2.9E-115 T 23-04-2016 RD1_RS01000 c47970a28bc10b0bc03a44acaeee679b 479 Pfam PF03167 Uracil DNA glycosylase superfamily 306 455 1.4E-36 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS01000 c47970a28bc10b0bc03a44acaeee679b 479 Gene3D G3DSA:3.40.470.10 285 470 3.5E-61 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS01000 c47970a28bc10b0bc03a44acaeee679b 479 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 292 459 3.9E-39 T 23-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain RD1_RS01000 c47970a28bc10b0bc03a44acaeee679b 479 SMART SM00987 306 466 1.7E-37 T 23-04-2016 RD1_RS01000 c47970a28bc10b0bc03a44acaeee679b 479 SMART SM00986 306 466 1.7E-37 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS01000 c47970a28bc10b0bc03a44acaeee679b 479 TIGRFAM TIGR03914 UDG_fam_dom: uracil-DNA glycosylase family domain 237 467 4.8E-97 T 23-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain RD1_RS01000 c47970a28bc10b0bc03a44acaeee679b 479 TIGRFAM TIGR03915 SAM_7_link_chp: probable DNA metabolism protein 10 235 4.2E-59 T 23-04-2016 IPR023875 DNA metabolism protein, putative RD1_RS09975 c35ba340f2304c17dfa1102b7dcd6b70 349 PANTHER PTHR38457 3 347 4.9E-40 T 23-04-2016 RD1_RS09975 c35ba340f2304c17dfa1102b7dcd6b70 349 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 16 164 1.1E-27 T 23-04-2016 IPR017516 AbrB duplication RD1_RS09975 c35ba340f2304c17dfa1102b7dcd6b70 349 PANTHER PTHR38457:SF1 3 347 4.9E-40 T 23-04-2016 RD1_RS09975 c35ba340f2304c17dfa1102b7dcd6b70 349 Pfam PF05145 Putative ammonia monooxygenase 34 343 4.3E-75 T 23-04-2016 IPR007820 AbrB family GO:0010468|GO:0016021 RD1_RS09975 c35ba340f2304c17dfa1102b7dcd6b70 349 PIRSF PIRSF038991 3 349 6.1E-99 T 23-04-2016 IPR007820 AbrB family GO:0010468|GO:0016021 RD1_RS01875 fc792c971bd167d9ddd926f239e05c60 181 Gene3D G3DSA:3.40.33.10 47 133 1.7E-5 T 23-04-2016 IPR014044 CAP domain RD1_RS01875 fc792c971bd167d9ddd926f239e05c60 181 Pfam PF00188 Cysteine-rich secretory protein family 53 167 2.0E-14 T 23-04-2016 IPR014044 CAP domain RD1_RS01875 fc792c971bd167d9ddd926f239e05c60 181 PANTHER PTHR31157 47 170 4.5E-25 T 23-04-2016 RD1_RS01875 fc792c971bd167d9ddd926f239e05c60 181 SUPERFAMILY SSF55797 45 167 3.92E-17 T 23-04-2016 IPR014044 CAP domain RD1_RS07325 cddda6decbf13c44054215ec4036748e 330 Pfam PF00248 Aldo/keto reductase family 16 307 8.3E-63 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS07325 cddda6decbf13c44054215ec4036748e 330 Gene3D G3DSA:3.20.20.100 1 318 3.2E-89 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS07325 cddda6decbf13c44054215ec4036748e 330 PANTHER PTHR11732 1 208 2.4E-101 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RD1_RS07325 cddda6decbf13c44054215ec4036748e 330 PANTHER PTHR11732 230 308 2.4E-101 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RD1_RS07325 cddda6decbf13c44054215ec4036748e 330 SUPERFAMILY SSF51430 1 312 1.83E-87 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS00930 f71eb8c816a9b0d14d722ad77dde0b62 515 PANTHER PTHR10566:SF79 63 442 1.6E-152 T 23-04-2016 RD1_RS00930 f71eb8c816a9b0d14d722ad77dde0b62 515 Pfam PF03109 ABC1 family 115 233 5.1E-31 T 23-04-2016 IPR004147 UbiB domain RD1_RS00930 f71eb8c816a9b0d14d722ad77dde0b62 515 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 7 444 2.0E-153 T 23-04-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 RD1_RS00930 f71eb8c816a9b0d14d722ad77dde0b62 515 SUPERFAMILY SSF56112 98 161 2.68E-26 T 23-04-2016 IPR011009 Protein kinase-like domain RD1_RS00930 f71eb8c816a9b0d14d722ad77dde0b62 515 SUPERFAMILY SSF56112 201 433 2.68E-26 T 23-04-2016 IPR011009 Protein kinase-like domain RD1_RS00930 f71eb8c816a9b0d14d722ad77dde0b62 515 Gene3D G3DSA:1.10.510.10 278 337 8.2E-5 T 23-04-2016 RD1_RS00930 f71eb8c816a9b0d14d722ad77dde0b62 515 PANTHER PTHR10566 63 442 1.6E-152 T 23-04-2016 RD1_RS08415 27e750d617cd3bdf69f26150b3467df8 125 Gene3D G3DSA:3.10.290.10 3 97 8.3E-31 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RD1_RS08415 27e750d617cd3bdf69f26150b3467df8 125 SMART SM00363 5 68 2.9E-5 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RD1_RS08415 27e750d617cd3bdf69f26150b3467df8 125 SUPERFAMILY SSF55174 4 88 5.36E-22 T 23-04-2016 RD1_RS08415 27e750d617cd3bdf69f26150b3467df8 125 Pfam PF01479 S4 domain 6 52 7.2E-9 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RD1_RS11830 f1f544eea4b6e4c9b4e9d2986f586d2a 447 Gene3D G3DSA:3.90.230.10 206 441 2.3E-28 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS11830 f1f544eea4b6e4c9b4e9d2986f586d2a 447 SUPERFAMILY SSF55920 206 443 9.94E-40 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS11830 f1f544eea4b6e4c9b4e9d2986f586d2a 447 PANTHER PTHR10804 39 62 8.6E-13 T 23-04-2016 RD1_RS11830 f1f544eea4b6e4c9b4e9d2986f586d2a 447 PANTHER PTHR10804 187 438 8.6E-13 T 23-04-2016 RD1_RS11830 f1f544eea4b6e4c9b4e9d2986f586d2a 447 PANTHER PTHR10804:SF110 39 62 8.6E-13 T 23-04-2016 RD1_RS11830 f1f544eea4b6e4c9b4e9d2986f586d2a 447 PANTHER PTHR10804:SF110 187 438 8.6E-13 T 23-04-2016 RD1_RS11830 f1f544eea4b6e4c9b4e9d2986f586d2a 447 Pfam PF00557 Metallopeptidase family M24 214 428 1.1E-20 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS03165 770901dc43d602bea9e68bb513e3da0a 309 Gene3D G3DSA:3.40.50.720 16 106 1.9E-24 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03165 770901dc43d602bea9e68bb513e3da0a 309 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 139 166 - T 23-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RD1_RS03165 770901dc43d602bea9e68bb513e3da0a 309 SUPERFAMILY SSF52283 1 125 1.32E-25 T 23-04-2016 RD1_RS03165 770901dc43d602bea9e68bb513e3da0a 309 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 100 272 9.1E-50 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RD1_RS03165 770901dc43d602bea9e68bb513e3da0a 309 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 25 303 4.6E-22 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 RD1_RS03165 770901dc43d602bea9e68bb513e3da0a 309 PANTHER PTHR10996:SF152 2 303 8.8E-109 T 23-04-2016 RD1_RS03165 770901dc43d602bea9e68bb513e3da0a 309 Gene3D G3DSA:3.40.50.720 107 273 1.1E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03165 770901dc43d602bea9e68bb513e3da0a 309 PANTHER PTHR10996 2 303 8.8E-109 T 23-04-2016 RD1_RS03165 770901dc43d602bea9e68bb513e3da0a 309 SUPERFAMILY SSF51735 94 273 2.49E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03880 d37c85078c4655c67485122e7d47de81 346 Pfam PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase 97 301 1.3E-28 T 23-04-2016 IPR005079 Peptidase C45 RD1_RS03880 d37c85078c4655c67485122e7d47de81 346 SUPERFAMILY SSF56235 105 218 2.39E-7 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS03880 d37c85078c4655c67485122e7d47de81 346 Gene3D G3DSA:3.60.60.10 131 212 3.3E-9 T 23-04-2016 IPR003199 Choloylglycine hydrolase/Peptidase C59 family GO:0016811 RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 SUPERFAMILY SSF52540 331 802 7.65E-106 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 SUPERFAMILY SSF52540 113 190 7.65E-106 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 SUPERFAMILY SSF52540 9 73 7.65E-106 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 SUPERFAMILY SSF52540 834 875 7.65E-106 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 PANTHER PTHR11070:SF23 113 207 4.3E-81 T 23-04-2016 RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 PANTHER PTHR11070:SF23 306 808 4.3E-81 T 23-04-2016 RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 PANTHER PTHR11070:SF23 17 82 4.3E-81 T 23-04-2016 RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 PANTHER PTHR11070:SF23 833 857 4.3E-81 T 23-04-2016 RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 TIGRFAM TIGR02784 addA_alphas: double-strand break repair helicase AddA 10 1103 0.0 T 23-04-2016 IPR014151 DNA helicase, AddA type RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 PANTHER PTHR11070 113 207 4.3E-81 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 PANTHER PTHR11070 306 808 4.3E-81 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 PANTHER PTHR11070 17 82 4.3E-81 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 PANTHER PTHR11070 833 857 4.3E-81 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 Gene3D G3DSA:3.40.50.300 472 609 5.3E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 Gene3D G3DSA:3.40.50.300 761 895 5.3E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 Pfam PF00580 UvrD/REP helicase N-terminal domain 11 453 2.5E-50 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 Gene3D G3DSA:3.40.50.300 121 183 7.1E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 Gene3D G3DSA:3.40.50.300 11 69 7.1E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 Gene3D G3DSA:3.40.50.300 341 455 7.1E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 Gene3D G3DSA:1.10.486.10 621 750 5.6E-14 T 23-04-2016 RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 Pfam PF13361 UvrD-like helicase C-terminal domain 761 856 3.4E-13 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 SUPERFAMILY SSF52980 955 1083 2.47E-6 T 23-04-2016 IPR011335 Restriction endonuclease type II-like RD1_RS02100 c5800a2b019adb92b75dac5a9987cfb1 1125 Pfam PF12705 PD-(D/E)XK nuclease superfamily 953 1086 2.4E-9 T 23-04-2016 RD1_RS07050 639562d4aba4d2ac25c724721f592c74 314 PANTHER PTHR11935:SF95 14 271 5.6E-18 T 23-04-2016 RD1_RS07050 639562d4aba4d2ac25c724721f592c74 314 SMART SM00849 59 245 1.0E-8 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS07050 639562d4aba4d2ac25c724721f592c74 314 Pfam PF00753 Metallo-beta-lactamase superfamily 124 245 3.3E-6 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS07050 639562d4aba4d2ac25c724721f592c74 314 PANTHER PTHR11935 14 271 5.6E-18 T 23-04-2016 RD1_RS07050 639562d4aba4d2ac25c724721f592c74 314 SUPERFAMILY SSF56281 33 265 1.05E-43 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS07050 639562d4aba4d2ac25c724721f592c74 314 Gene3D G3DSA:3.60.15.10 34 264 1.9E-41 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS17695 ef1b809a0b26975ff0f311754d2c5d2b 440 PANTHER PTHR13847 36 411 7.0E-66 T 23-04-2016 RD1_RS17695 ef1b809a0b26975ff0f311754d2c5d2b 440 SUPERFAMILY SSF51905 362 408 8.42E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS17695 ef1b809a0b26975ff0f311754d2c5d2b 440 SUPERFAMILY SSF51905 35 260 8.42E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS17695 ef1b809a0b26975ff0f311754d2c5d2b 440 PANTHER PTHR13847:SF196 36 411 7.0E-66 T 23-04-2016 RD1_RS17695 ef1b809a0b26975ff0f311754d2c5d2b 440 Pfam PF01266 FAD dependent oxidoreductase 36 386 6.1E-48 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS17695 ef1b809a0b26975ff0f311754d2c5d2b 440 Gene3D G3DSA:3.50.50.60 33 125 1.4E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS17695 ef1b809a0b26975ff0f311754d2c5d2b 440 Gene3D G3DSA:3.50.50.60 353 396 1.4E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS17695 ef1b809a0b26975ff0f311754d2c5d2b 440 Gene3D G3DSA:3.50.50.60 179 259 1.4E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS18030 0b6641ff8f05c7afad450e6925cba5b4 413 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 23 118 3.6E-13 T 23-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RD1_RS18030 0b6641ff8f05c7afad450e6925cba5b4 413 SUPERFAMILY SSF54826 1 118 1.45E-27 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RD1_RS18030 0b6641ff8f05c7afad450e6925cba5b4 413 Pfam PF13378 Enolase C-terminal domain-like 149 372 3.5E-62 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS18030 0b6641ff8f05c7afad450e6925cba5b4 413 PANTHER PTHR13794:SF4 21 396 3.7E-95 T 23-04-2016 RD1_RS18030 0b6641ff8f05c7afad450e6925cba5b4 413 Gene3D G3DSA:3.20.20.120 126 370 1.7E-81 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS18030 0b6641ff8f05c7afad450e6925cba5b4 413 Gene3D G3DSA:3.30.390.10 1 125 2.1E-44 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RD1_RS18030 0b6641ff8f05c7afad450e6925cba5b4 413 SMART SM00922 146 255 7.6E-20 T 23-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RD1_RS18030 0b6641ff8f05c7afad450e6925cba5b4 413 PANTHER PTHR13794 21 396 3.7E-95 T 23-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 RD1_RS18030 0b6641ff8f05c7afad450e6925cba5b4 413 SUPERFAMILY SSF51604 106 380 1.14E-77 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS03825 2d65f1c1f0d5101b9b74d8e6e04cfc0f 167 Gene3D G3DSA:3.40.50.620 4 160 1.0E-32 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS03825 2d65f1c1f0d5101b9b74d8e6e04cfc0f 167 PIRSF PIRSF006276 3 162 3.1E-17 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS03825 2d65f1c1f0d5101b9b74d8e6e04cfc0f 167 PANTHER PTHR31964 7 159 1.8E-23 T 23-04-2016 RD1_RS03825 2d65f1c1f0d5101b9b74d8e6e04cfc0f 167 PRINTS PR01438 Universal stress protein signature 5 23 1.7E-8 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS03825 2d65f1c1f0d5101b9b74d8e6e04cfc0f 167 PRINTS PR01438 Universal stress protein signature 120 132 1.7E-8 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS03825 2d65f1c1f0d5101b9b74d8e6e04cfc0f 167 PRINTS PR01438 Universal stress protein signature 137 159 1.7E-8 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS03825 2d65f1c1f0d5101b9b74d8e6e04cfc0f 167 Pfam PF00582 Universal stress protein family 6 159 6.0E-27 T 23-04-2016 IPR006016 UspA GO:0006950 RD1_RS03825 2d65f1c1f0d5101b9b74d8e6e04cfc0f 167 PANTHER PTHR31964:SF42 7 159 1.8E-23 T 23-04-2016 RD1_RS03825 2d65f1c1f0d5101b9b74d8e6e04cfc0f 167 SUPERFAMILY SSF52402 6 159 9.21E-30 T 23-04-2016 RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 ProSitePatterns PS00802 Transketolase signature 2. 470 486 - T 23-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 16 320 1.1E-119 T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 PANTHER PTHR11624:SF1 343 681 0.0 T 23-04-2016 RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 PANTHER PTHR11624:SF1 17 315 0.0 T 23-04-2016 RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 Pfam PF02780 Transketolase, C-terminal domain 552 661 1.4E-8 T 23-04-2016 IPR033248 Transketolase, C-terminal domain RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 SMART SM00861 357 528 3.6E-62 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 PANTHER PTHR11624 343 681 0.0 T 23-04-2016 IPR033247 Transketolase family RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 PANTHER PTHR11624 17 315 0.0 T 23-04-2016 IPR033247 Transketolase family RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 Gene3D G3DSA:3.40.50.920 541 671 5.0E-41 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 SUPERFAMILY SSF52518 351 529 1.73E-64 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 SUPERFAMILY SSF52922 536 675 3.71E-40 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 TIGRFAM TIGR00232 tktlase_bact: transketolase 16 671 1.5E-233 T 23-04-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 Gene3D G3DSA:3.40.50.970 16 322 1.5E-109 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 SUPERFAMILY SSF52518 16 320 2.95E-105 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 Gene3D G3DSA:3.40.50.970 331 533 3.4E-72 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS13725 e40c0c07d0d43de662bd5061166dc9c7 681 Pfam PF02779 Transketolase, pyrimidine binding domain 356 527 3.1E-42 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RD1_RS09360 e12dc36939ee68d93b8a038ec1f210d7 485 Gene3D G3DSA:3.40.309.10 264 449 1.1E-68 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RD1_RS09360 e12dc36939ee68d93b8a038ec1f210d7 485 TIGRFAM TIGR01804 BADH: betaine-aldehyde dehydrogenase 12 472 6.4E-210 T 23-04-2016 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 RD1_RS09360 e12dc36939ee68d93b8a038ec1f210d7 485 PANTHER PTHR11699:SF46 1 485 1.7E-238 T 23-04-2016 RD1_RS09360 e12dc36939ee68d93b8a038ec1f210d7 485 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 250 257 - T 23-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 RD1_RS09360 e12dc36939ee68d93b8a038ec1f210d7 485 Pfam PF00171 Aldehyde dehydrogenase family 18 474 5.5E-169 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RD1_RS09360 e12dc36939ee68d93b8a038ec1f210d7 485 SUPERFAMILY SSF53720 4 480 2.09E-164 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS09360 e12dc36939ee68d93b8a038ec1f210d7 485 PANTHER PTHR11699 1 485 1.7E-238 T 23-04-2016 RD1_RS09360 e12dc36939ee68d93b8a038ec1f210d7 485 Gene3D G3DSA:3.40.605.10 9 263 7.9E-98 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RD1_RS09360 e12dc36939ee68d93b8a038ec1f210d7 485 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 278 289 - T 23-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RD1_RS00665 985423f0d4332ebf8c97c2af8d2eb161 432 PIRSF PIRSF016565 1 430 7.7E-134 T 23-04-2016 IPR026036 PucC protein RD1_RS00665 985423f0d4332ebf8c97c2af8d2eb161 432 Gene3D G3DSA:1.20.1250.20 218 419 6.0E-9 T 23-04-2016 RD1_RS00665 985423f0d4332ebf8c97c2af8d2eb161 432 Gene3D G3DSA:1.20.1250.20 11 191 5.6E-5 T 23-04-2016 RD1_RS00665 985423f0d4332ebf8c97c2af8d2eb161 432 PANTHER PTHR23538 1 415 1.5E-37 T 23-04-2016 RD1_RS00665 985423f0d4332ebf8c97c2af8d2eb161 432 Pfam PF03209 PUCC protein 27 417 6.4E-86 T 23-04-2016 IPR004896 PucC-related RD1_RS00665 985423f0d4332ebf8c97c2af8d2eb161 432 SUPERFAMILY SSF103473 9 418 3.14E-25 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS15245 53452d52f7ceb5a29bd4a36f2ee67ab0 498 PIRSF PIRSF000204 1 498 7.7E-201 T 23-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 RD1_RS15245 53452d52f7ceb5a29bd4a36f2ee67ab0 498 SUPERFAMILY SSF52467 328 497 1.96E-73 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS15245 53452d52f7ceb5a29bd4a36f2ee67ab0 498 Pfam PF02233 NAD(P) transhydrogenase beta subunit 8 494 6.3E-181 T 23-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 RD1_RS15245 53452d52f7ceb5a29bd4a36f2ee67ab0 498 Gene3D G3DSA:3.40.50.1220 322 496 1.3E-86 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS15245 53452d52f7ceb5a29bd4a36f2ee67ab0 498 PANTHER PTHR10160 3 121 9.5E-215 T 23-04-2016 RD1_RS15245 53452d52f7ceb5a29bd4a36f2ee67ab0 498 PANTHER PTHR10160 161 494 9.5E-215 T 23-04-2016 RD1_RS00660 2fb6a2137c5a14814d037e4459a57f1a 299 TIGRFAM TIGR01476 chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase 17 296 2.1E-112 T 23-04-2016 IPR006372 Bacteriochlorophyll/chlorophyll synthetase RD1_RS00660 2fb6a2137c5a14814d037e4459a57f1a 299 Pfam PF01040 UbiA prenyltransferase family 32 272 2.7E-38 T 23-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RD1_RS00660 2fb6a2137c5a14814d037e4459a57f1a 299 PANTHER PTHR11048 19 295 1.5E-62 T 23-04-2016 RD1_RS00660 2fb6a2137c5a14814d037e4459a57f1a 299 PANTHER PTHR11048:SF32 19 295 1.5E-62 T 23-04-2016 RD1_RS11940 60bfd4db0a1caf205d87066001c8f01c 186 SMART SM00935 10 173 3.8E-30 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 RD1_RS11940 60bfd4db0a1caf205d87066001c8f01c 186 Pfam PF03938 Outer membrane protein (OmpH-like) 12 172 3.5E-19 T 23-04-2016 IPR005632 Chaperone protein Skp GO:0051082 RD1_RS11940 60bfd4db0a1caf205d87066001c8f01c 186 Gene3D G3DSA:3.30.910.20 68 173 5.1E-4 T 23-04-2016 RD1_RS11940 60bfd4db0a1caf205d87066001c8f01c 186 SUPERFAMILY SSF111384 34 173 9.94E-20 T 23-04-2016 IPR024930 Skp domain RD1_RS12570 79cf874aaa6cee2f81d02bf2c4aca372 345 PANTHER PTHR14226 120 263 2.0E-41 T 23-04-2016 RD1_RS12570 79cf874aaa6cee2f81d02bf2c4aca372 345 PANTHER PTHR14226 1 92 2.0E-41 T 23-04-2016 RD1_RS12570 79cf874aaa6cee2f81d02bf2c4aca372 345 Gene3D G3DSA:3.40.1090.10 8 211 4.8E-8 T 23-04-2016 RD1_RS12570 79cf874aaa6cee2f81d02bf2c4aca372 345 Pfam PF01734 Patatin-like phospholipase 8 210 2.8E-11 T 23-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 RD1_RS12570 79cf874aaa6cee2f81d02bf2c4aca372 345 SUPERFAMILY SSF52151 116 335 5.23E-44 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RD1_RS12570 79cf874aaa6cee2f81d02bf2c4aca372 345 SUPERFAMILY SSF52151 1 83 5.23E-44 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RD1_RS12570 79cf874aaa6cee2f81d02bf2c4aca372 345 PANTHER PTHR14226:SF37 120 263 2.0E-41 T 23-04-2016 RD1_RS12570 79cf874aaa6cee2f81d02bf2c4aca372 345 PANTHER PTHR14226:SF37 1 92 2.0E-41 T 23-04-2016 RD1_RS17440 f21e04b089fd86960d0d536d7ff2e351 250 SUPERFAMILY SSF51735 9 249 6.36E-73 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17440 f21e04b089fd86960d0d536d7ff2e351 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 3.4E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17440 f21e04b089fd86960d0d536d7ff2e351 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 3.4E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17440 f21e04b089fd86960d0d536d7ff2e351 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 3.4E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17440 f21e04b089fd86960d0d536d7ff2e351 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 3.4E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17440 f21e04b089fd86960d0d536d7ff2e351 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 3.4E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17440 f21e04b089fd86960d0d536d7ff2e351 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.4E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17440 f21e04b089fd86960d0d536d7ff2e351 250 Gene3D G3DSA:3.40.50.720 9 249 2.7E-76 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17440 f21e04b089fd86960d0d536d7ff2e351 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 248 8.7E-56 T 23-04-2016 RD1_RS17440 f21e04b089fd86960d0d536d7ff2e351 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 5.9E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17440 f21e04b089fd86960d0d536d7ff2e351 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 5.9E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17440 f21e04b089fd86960d0d536d7ff2e351 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 5.9E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17440 f21e04b089fd86960d0d536d7ff2e351 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS17440 f21e04b089fd86960d0d536d7ff2e351 250 PANTHER PTHR24322 155 187 3.1E-49 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17440 f21e04b089fd86960d0d536d7ff2e351 250 PANTHER PTHR24322 14 139 3.1E-49 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17045 0f7d4439fbb69aa3539d5472f3ab5faa 585 SMART SM00642 68 412 2.3E-5 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RD1_RS17045 0f7d4439fbb69aa3539d5472f3ab5faa 585 Gene3D G3DSA:3.90.400.10 146 214 1.6E-20 T 23-04-2016 RD1_RS17045 0f7d4439fbb69aa3539d5472f3ab5faa 585 Gene3D G3DSA:3.20.20.80 220 492 2.6E-89 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RD1_RS17045 0f7d4439fbb69aa3539d5472f3ab5faa 585 Gene3D G3DSA:3.20.20.80 58 145 2.6E-89 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RD1_RS17045 0f7d4439fbb69aa3539d5472f3ab5faa 585 SUPERFAMILY SSF51011 503 580 3.89E-9 T 23-04-2016 RD1_RS17045 0f7d4439fbb69aa3539d5472f3ab5faa 585 Pfam PF00128 Alpha amylase, catalytic domain 86 307 3.3E-18 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RD1_RS17045 0f7d4439fbb69aa3539d5472f3ab5faa 585 PIRSF PIRSF003059 10 580 4.2E-167 T 23-04-2016 IPR016377 Sucrose phosphorylase GO:0005985|GO:0009018 KEGG: 00500+2.4.1.7|MetaCyc: PWY-5384 RD1_RS17045 0f7d4439fbb69aa3539d5472f3ab5faa 585 PANTHER PTHR10357 78 350 4.0E-108 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RD1_RS17045 0f7d4439fbb69aa3539d5472f3ab5faa 585 PANTHER PTHR10357 399 585 4.0E-108 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RD1_RS17045 0f7d4439fbb69aa3539d5472f3ab5faa 585 SUPERFAMILY SSF51445 408 534 1.67E-82 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RD1_RS17045 0f7d4439fbb69aa3539d5472f3ab5faa 585 SUPERFAMILY SSF51445 56 367 1.67E-82 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RD1_RS17045 0f7d4439fbb69aa3539d5472f3ab5faa 585 Gene3D G3DSA:2.60.40.1180 510 580 1.7E-15 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta RD1_RS17045 0f7d4439fbb69aa3539d5472f3ab5faa 585 PANTHER PTHR10357:SF132 78 350 4.0E-108 T 23-04-2016 RD1_RS17045 0f7d4439fbb69aa3539d5472f3ab5faa 585 PANTHER PTHR10357:SF132 399 585 4.0E-108 T 23-04-2016 RD1_RS16420 a0ea4209f5c5efe84bdb2af2d5fb28df 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 294 4.0E-21 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS16420 a0ea4209f5c5efe84bdb2af2d5fb28df 297 Gene3D G3DSA:1.10.3720.10 9 284 4.8E-57 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS16420 a0ea4209f5c5efe84bdb2af2d5fb28df 297 PANTHER PTHR30193 9 297 6.1E-81 T 23-04-2016 RD1_RS16420 a0ea4209f5c5efe84bdb2af2d5fb28df 297 PANTHER PTHR30193:SF6 9 297 6.1E-81 T 23-04-2016 RD1_RS16420 a0ea4209f5c5efe84bdb2af2d5fb28df 297 SUPERFAMILY SSF161098 58 284 1.83E-57 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS06090 84f43919c4903dd4abc990b0174be25a 115 SMART SM00418 7 85 4.5E-19 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS06090 84f43919c4903dd4abc990b0174be25a 115 Pfam PF12840 Helix-turn-helix domain 6 65 7.4E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS06090 84f43919c4903dd4abc990b0174be25a 115 SUPERFAMILY SSF46785 2 90 2.51E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS06090 84f43919c4903dd4abc990b0174be25a 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 1.7E-12 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS06090 84f43919c4903dd4abc990b0174be25a 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 28 39 1.7E-12 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS06090 84f43919c4903dd4abc990b0174be25a 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 1.7E-12 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS06090 84f43919c4903dd4abc990b0174be25a 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 1.7E-12 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS06090 84f43919c4903dd4abc990b0174be25a 115 PANTHER PTHR33154 3 96 2.8E-21 T 23-04-2016 RD1_RS06090 84f43919c4903dd4abc990b0174be25a 115 Gene3D G3DSA:1.10.10.10 3 103 1.5E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS15950 2b5501a874bbd2c1f6589077d4cec5a0 268 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 7 259 4.8E-77 T 23-04-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 RD1_RS15950 2b5501a874bbd2c1f6589077d4cec5a0 268 PANTHER PTHR10060 6 262 2.6E-106 T 23-04-2016 IPR001130 TatD family GO:0016788 RD1_RS15950 2b5501a874bbd2c1f6589077d4cec5a0 268 PANTHER PTHR10060:SF20 6 262 2.6E-106 T 23-04-2016 RD1_RS15950 2b5501a874bbd2c1f6589077d4cec5a0 268 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 129 139 - T 23-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RD1_RS15950 2b5501a874bbd2c1f6589077d4cec5a0 268 Gene3D G3DSA:3.20.20.140 3 258 1.3E-81 T 23-04-2016 RD1_RS15950 2b5501a874bbd2c1f6589077d4cec5a0 268 Pfam PF01026 TatD related DNase 8 258 5.7E-70 T 23-04-2016 IPR001130 TatD family GO:0016788 RD1_RS15950 2b5501a874bbd2c1f6589077d4cec5a0 268 SUPERFAMILY SSF51556 7 258 2.73E-82 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS15950 2b5501a874bbd2c1f6589077d4cec5a0 268 PIRSF PIRSF005902 1 263 6.8E-70 T 23-04-2016 IPR001130 TatD family GO:0016788 RD1_RS05040 e3e4bc9760e5e1c26a648de361fae001 176 TIGRFAM TIGR03370 VPLPA-CTERM: VPLPA-CTERM protein sorting domain 151 174 1.1E-9 T 23-04-2016 IPR022472 VPLPA-CTERM protein sorting domain RD1_RS05040 e3e4bc9760e5e1c26a648de361fae001 176 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 151 174 8.7E-4 T 23-04-2016 IPR013424 PEP-CTERM protein-sorting domain RD1_RS18040 d5611107bc798e7122db9df194743d12 374 Gene3D G3DSA:3.20.20.210 3 372 7.4E-70 T 23-04-2016 RD1_RS18040 d5611107bc798e7122db9df194743d12 374 SUPERFAMILY SSF51726 4 371 2.62E-67 T 23-04-2016 RD1_RS18040 d5611107bc798e7122db9df194743d12 374 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 166 345 2.3E-7 T 23-04-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 RD1_RS18040 d5611107bc798e7122db9df194743d12 374 PANTHER PTHR30519 4 368 1.1E-16 T 23-04-2016 RD1_RS18090 2326f35db07353b1b5bbf21374915208 406 Gene3D G3DSA:3.40.190.10 81 146 3.2E-4 T 23-04-2016 RD1_RS18090 2326f35db07353b1b5bbf21374915208 406 PANTHER PTHR30061 1 405 1.8E-28 T 23-04-2016 RD1_RS18090 2326f35db07353b1b5bbf21374915208 406 SUPERFAMILY SSF53850 59 395 1.49E-50 T 23-04-2016 RD1_RS18090 2326f35db07353b1b5bbf21374915208 406 Gene3D G3DSA:3.40.190.10 147 312 1.1E-34 T 23-04-2016 RD1_RS18090 2326f35db07353b1b5bbf21374915208 406 Pfam PF01547 Bacterial extracellular solute-binding protein 61 305 2.5E-23 T 23-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 RD1_RS03550 66ca94af98b024bb921120194268af66 103 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 23-04-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 RD1_RS03550 66ca94af98b024bb921120194268af66 103 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 25.746 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS03550 66ca94af98b024bb921120194268af66 103 Gene3D G3DSA:2.30.33.40 2 95 1.3E-36 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS03550 66ca94af98b024bb921120194268af66 103 PANTHER PTHR10772 1 99 9.8E-47 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS03550 66ca94af98b024bb921120194268af66 103 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 2.0E-34 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS03550 66ca94af98b024bb921120194268af66 103 PRINTS PR00297 10kDa chaperonin signature 25 46 3.2E-32 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS03550 66ca94af98b024bb921120194268af66 103 PRINTS PR00297 10kDa chaperonin signature 3 18 3.2E-32 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS03550 66ca94af98b024bb921120194268af66 103 PRINTS PR00297 10kDa chaperonin signature 60 72 3.2E-32 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS03550 66ca94af98b024bb921120194268af66 103 PRINTS PR00297 10kDa chaperonin signature 81 94 3.2E-32 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS03550 66ca94af98b024bb921120194268af66 103 SMART SM00883 2 94 4.8E-55 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS03550 66ca94af98b024bb921120194268af66 103 SUPERFAMILY SSF50129 1 95 7.72E-34 T 23-04-2016 IPR011032 GroES-like RD1_RS03085 10e0c62e38a0a09fb3c77d20fa915198 294 PANTHER PTHR22911:SF70 5 293 6.7E-52 T 23-04-2016 RD1_RS03085 10e0c62e38a0a09fb3c77d20fa915198 294 Pfam PF00892 EamA-like transporter family 158 287 3.5E-6 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS03085 10e0c62e38a0a09fb3c77d20fa915198 294 Pfam PF00892 EamA-like transporter family 14 148 1.9E-12 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS03085 10e0c62e38a0a09fb3c77d20fa915198 294 SUPERFAMILY SSF103481 194 292 1.03E-11 T 23-04-2016 RD1_RS03085 10e0c62e38a0a09fb3c77d20fa915198 294 SUPERFAMILY SSF103481 72 150 1.83E-10 T 23-04-2016 RD1_RS03085 10e0c62e38a0a09fb3c77d20fa915198 294 PANTHER PTHR22911 5 293 6.7E-52 T 23-04-2016 RD1_RS17370 f4e3161e4e0360866b74dfe9b2deaee3 265 SMART SM00849 36 236 6.3E-15 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS17370 f4e3161e4e0360866b74dfe9b2deaee3 265 SUPERFAMILY SSF56281 24 245 2.49E-37 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS17370 f4e3161e4e0360866b74dfe9b2deaee3 265 PANTHER PTHR23200:SF40 4 246 9.9E-60 T 23-04-2016 RD1_RS17370 f4e3161e4e0360866b74dfe9b2deaee3 265 Pfam PF00753 Metallo-beta-lactamase superfamily 38 236 4.2E-22 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS17370 f4e3161e4e0360866b74dfe9b2deaee3 265 PANTHER PTHR23200 4 246 9.9E-60 T 23-04-2016 RD1_RS17370 f4e3161e4e0360866b74dfe9b2deaee3 265 Gene3D G3DSA:3.60.15.10 27 239 1.6E-35 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS18060 ac2f9c91704dfb6133edd801805ddac2 253 Gene3D G3DSA:3.40.50.720 6 251 5.9E-77 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS18060 ac2f9c91704dfb6133edd801805ddac2 253 PANTHER PTHR24322 158 190 2.2E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18060 ac2f9c91704dfb6133edd801805ddac2 253 PANTHER PTHR24322 19 142 2.2E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18060 ac2f9c91704dfb6133edd801805ddac2 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 21 251 1.0E-56 T 23-04-2016 RD1_RS18060 ac2f9c91704dfb6133edd801805ddac2 253 SUPERFAMILY SSF51735 10 252 8.54E-77 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS18060 ac2f9c91704dfb6133edd801805ddac2 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.1E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18060 ac2f9c91704dfb6133edd801805ddac2 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.1E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18060 ac2f9c91704dfb6133edd801805ddac2 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.1E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18060 ac2f9c91704dfb6133edd801805ddac2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.7E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18060 ac2f9c91704dfb6133edd801805ddac2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 3.7E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18060 ac2f9c91704dfb6133edd801805ddac2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 3.7E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18060 ac2f9c91704dfb6133edd801805ddac2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 3.7E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18060 ac2f9c91704dfb6133edd801805ddac2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 3.7E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18060 ac2f9c91704dfb6133edd801805ddac2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.7E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18060 ac2f9c91704dfb6133edd801805ddac2 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS04880 cba6ea90ffaba5df84e760e307d1050a 739 PANTHER PTHR30183 161 732 1.3E-176 T 23-04-2016 RD1_RS04880 cba6ea90ffaba5df84e760e307d1050a 739 Gene3D G3DSA:1.10.3720.10 467 719 3.2E-41 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04880 cba6ea90ffaba5df84e760e307d1050a 739 SUPERFAMILY SSF161098 171 442 4.19E-48 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04880 cba6ea90ffaba5df84e760e307d1050a 739 SUPERFAMILY SSF161098 467 724 1.07E-43 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04880 cba6ea90ffaba5df84e760e307d1050a 739 Gene3D G3DSA:1.10.3720.10 174 442 6.9E-47 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04880 cba6ea90ffaba5df84e760e307d1050a 739 PANTHER PTHR30183:SF7 161 732 1.3E-176 T 23-04-2016 RD1_RS04880 cba6ea90ffaba5df84e760e307d1050a 739 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 248 432 1.0E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04880 cba6ea90ffaba5df84e760e307d1050a 739 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 545 717 4.7E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04365 3ade8dcd5b777fb696d816264e2e775f 185 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 120 126 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RD1_RS04365 3ade8dcd5b777fb696d816264e2e775f 185 PANTHER PTHR18895 25 180 8.4E-34 T 23-04-2016 RD1_RS04365 3ade8dcd5b777fb696d816264e2e775f 185 PANTHER PTHR18895:SF60 25 180 8.4E-34 T 23-04-2016 RD1_RS04365 3ade8dcd5b777fb696d816264e2e775f 185 Gene3D G3DSA:3.40.50.150 1 182 1.3E-52 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS04365 3ade8dcd5b777fb696d816264e2e775f 185 PIRSF PIRSF004553 1 183 5.5E-46 T 23-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS04365 3ade8dcd5b777fb696d816264e2e775f 185 Pfam PF03602 Conserved hypothetical protein 95 1 180 2.0E-47 T 23-04-2016 RD1_RS04365 3ade8dcd5b777fb696d816264e2e775f 185 SUPERFAMILY SSF53335 1 180 6.04E-45 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS04365 3ade8dcd5b777fb696d816264e2e775f 185 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 2 181 1.4E-41 T 23-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS14520 91e3678f3a71f595853a3775fd6bd30b 405 PRINTS PR01217 Proline rich extensin signature 222 239 5.9E-11 T 23-04-2016 RD1_RS14520 91e3678f3a71f595853a3775fd6bd30b 405 PRINTS PR01217 Proline rich extensin signature 249 274 5.9E-11 T 23-04-2016 RD1_RS14520 91e3678f3a71f595853a3775fd6bd30b 405 PRINTS PR01217 Proline rich extensin signature 151 163 5.9E-11 T 23-04-2016 RD1_RS14520 91e3678f3a71f595853a3775fd6bd30b 405 PRINTS PR01217 Proline rich extensin signature 200 216 5.9E-11 T 23-04-2016 RD1_RS14520 91e3678f3a71f595853a3775fd6bd30b 405 PRINTS PR01217 Proline rich extensin signature 177 198 5.9E-11 T 23-04-2016 RD1_RS14520 91e3678f3a71f595853a3775fd6bd30b 405 SMART SM00422 10 79 2.1E-6 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RD1_RS14520 91e3678f3a71f595853a3775fd6bd30b 405 PANTHER PTHR30204 1 78 2.2E-18 T 23-04-2016 RD1_RS14520 91e3678f3a71f595853a3775fd6bd30b 405 Pfam PF13411 MerR HTH family regulatory protein 10 78 3.7E-20 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RD1_RS14520 91e3678f3a71f595853a3775fd6bd30b 405 SUPERFAMILY SSF46955 10 79 1.14E-13 T 23-04-2016 IPR009061 Putative DNA-binding domain RD1_RS14520 91e3678f3a71f595853a3775fd6bd30b 405 Gene3D G3DSA:1.10.1660.10 10 77 2.3E-11 T 23-04-2016 RD1_RS14520 91e3678f3a71f595853a3775fd6bd30b 405 PANTHER PTHR30204:SF15 1 78 2.2E-18 T 23-04-2016 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 334 358 3.1E-44 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 401 416 3.1E-44 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 416 436 3.1E-44 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 67 87 3.1E-44 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 358 381 3.1E-44 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 301 322 3.1E-44 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 25 48 3.1E-44 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 19 436 6.7E-103 T 23-04-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 PANTHER PTHR30386 148 436 6.0E-101 T 23-04-2016 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 PANTHER PTHR30386 17 110 6.0E-101 T 23-04-2016 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 Pfam PF13533 Biotin-lipoyl like 59 103 3.7E-6 T 23-04-2016 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 Pfam PF13437 HlyD family secretion protein 289 393 6.8E-12 T 23-04-2016 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 PANTHER PTHR30386:SF3 148 436 6.0E-101 T 23-04-2016 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 PANTHER PTHR30386:SF3 17 110 6.0E-101 T 23-04-2016 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 Gene3D G3DSA:2.40.50.100 60 89 5.1E-10 T 23-04-2016 RD1_RS07935 161ab8b56c52a5b21930c7917266df6e 437 Gene3D G3DSA:2.40.50.100 286 321 5.1E-10 T 23-04-2016 RD1_RS09785 515828cb1ee134b935dbbda26baae407 320 PANTHER PTHR35007:SF1 66 284 3.7E-39 T 23-04-2016 RD1_RS09785 515828cb1ee134b935dbbda26baae407 320 Pfam PF00482 Type II secretion system (T2SS), protein F 153 277 5.0E-14 T 23-04-2016 IPR018076 Type II secretion system F domain RD1_RS09785 515828cb1ee134b935dbbda26baae407 320 PANTHER PTHR35007 66 284 3.7E-39 T 23-04-2016 RD1_RS05440 2b423a34d2a17d63a3be2a03c971eb05 98 Pfam PF07330 Protein of unknown function (DUF1467) 1 82 1.1E-26 T 23-04-2016 IPR009935 Protein of unknown function DUF1467 RD1_RS14245 eb1d6ae66566420fdb023ca277bffc6f 260 Pfam PF00005 ABC transporter 26 167 1.5E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS14245 eb1d6ae66566420fdb023ca277bffc6f 260 Gene3D G3DSA:3.40.50.300 7 220 1.3E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14245 eb1d6ae66566420fdb023ca277bffc6f 260 PANTHER PTHR24220 8 220 2.6E-83 T 23-04-2016 RD1_RS14245 eb1d6ae66566420fdb023ca277bffc6f 260 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS14245 eb1d6ae66566420fdb023ca277bffc6f 260 SUPERFAMILY SSF52540 7 239 9.43E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14245 eb1d6ae66566420fdb023ca277bffc6f 260 SMART SM00382 35 218 9.9E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS18045 4c74356538ff0ae34495f766bb73173a 324 Pfam PF07883 Cupin domain 69 130 5.7E-8 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RD1_RS18045 4c74356538ff0ae34495f766bb73173a 324 SUPERFAMILY SSF51182 175 312 3.11E-35 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS18045 4c74356538ff0ae34495f766bb73173a 324 SUPERFAMILY SSF51182 19 144 3.11E-35 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS18045 4c74356538ff0ae34495f766bb73173a 324 Gene3D G3DSA:2.60.120.10 10 137 3.6E-16 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS18045 4c74356538ff0ae34495f766bb73173a 324 Gene3D G3DSA:2.60.120.10 245 306 6.5E-7 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS07130 7803aa4fa5198eebeb9668e63aa32676 420 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 13 417 1.3E-105 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS07130 7803aa4fa5198eebeb9668e63aa32676 420 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 5 412 1.2E-95 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS07130 7803aa4fa5198eebeb9668e63aa32676 420 PANTHER PTHR33362 4 416 2.6E-145 T 23-04-2016 RD1_RS07130 7803aa4fa5198eebeb9668e63aa32676 420 PIRSF PIRSF006066 1 420 6.6E-117 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS07130 7803aa4fa5198eebeb9668e63aa32676 420 PANTHER PTHR33362:SF2 4 416 2.6E-145 T 23-04-2016 RD1_RS04265 e311dfb87cf9f60914bd5199c4ae5256 260 PANTHER PTHR23024 31 194 4.0E-14 T 23-04-2016 RD1_RS04265 e311dfb87cf9f60914bd5199c4ae5256 260 Pfam PF07859 alpha/beta hydrolase fold 65 179 1.8E-7 T 23-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 RD1_RS04265 e311dfb87cf9f60914bd5199c4ae5256 260 SUPERFAMILY SSF53474 2 247 3.88E-46 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS04265 e311dfb87cf9f60914bd5199c4ae5256 260 Gene3D G3DSA:3.40.50.1820 37 258 1.7E-47 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS04265 e311dfb87cf9f60914bd5199c4ae5256 260 PANTHER PTHR23024:SF163 31 194 4.0E-14 T 23-04-2016 RD1_RS00470 0b9cd391f1c3ff4888f369f7bc3a5836 283 PANTHER PTHR33149:SF2 64 195 7.8E-27 T 23-04-2016 RD1_RS00470 0b9cd391f1c3ff4888f369f7bc3a5836 283 TIGRFAM TIGR01157 pufL: photosynthetic reaction center L subunit 35 273 2.7E-132 T 23-04-2016 IPR005871 Photosynthetic reaction centre, L subunit GO:0019684|GO:0030077|GO:0045156 RD1_RS00470 0b9cd391f1c3ff4888f369f7bc3a5836 283 Pfam PF00124 Photosynthetic reaction centre protein 30 273 8.2E-96 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00470 0b9cd391f1c3ff4888f369f7bc3a5836 283 Gene3D G3DSA:1.20.85.10 167 273 2.6E-49 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00470 0b9cd391f1c3ff4888f369f7bc3a5836 283 ProSitePatterns PS00244 Photosynthetic reaction center proteins signature. 167 193 - T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00470 0b9cd391f1c3ff4888f369f7bc3a5836 283 Gene3D G3DSA:1.20.85.10 6 163 1.7E-61 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00470 0b9cd391f1c3ff4888f369f7bc3a5836 283 SUPERFAMILY SSF81483 3 278 1.96E-114 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00470 0b9cd391f1c3ff4888f369f7bc3a5836 283 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 173 199 1.5E-63 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00470 0b9cd391f1c3ff4888f369f7bc3a5836 283 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 226 251 1.5E-63 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00470 0b9cd391f1c3ff4888f369f7bc3a5836 283 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 84 112 1.5E-63 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00470 0b9cd391f1c3ff4888f369f7bc3a5836 283 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 34 55 1.5E-63 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00470 0b9cd391f1c3ff4888f369f7bc3a5836 283 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 117 139 1.5E-63 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RD1_RS00470 0b9cd391f1c3ff4888f369f7bc3a5836 283 PANTHER PTHR33149 64 195 7.8E-27 T 23-04-2016 RD1_RS06380 b96ef311c3914df989ee3ff17a824ed6 295 PIRSF PIRSF005052 9 292 9.5E-92 T 23-04-2016 IPR005337 RapZ-like family GO:0005524 RD1_RS06380 b96ef311c3914df989ee3ff17a824ed6 295 PANTHER PTHR30448:SF0 1 295 6.0E-106 T 23-04-2016 RD1_RS06380 b96ef311c3914df989ee3ff17a824ed6 295 Gene3D G3DSA:3.40.50.300 9 161 4.4E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06380 b96ef311c3914df989ee3ff17a824ed6 295 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 9 289 38.529 T 23-04-2016 IPR005337 RapZ-like family GO:0005524 RD1_RS06380 b96ef311c3914df989ee3ff17a824ed6 295 PANTHER PTHR30448 1 295 6.0E-106 T 23-04-2016 RD1_RS06380 b96ef311c3914df989ee3ff17a824ed6 295 SUPERFAMILY SSF52540 10 160 2.82E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06380 b96ef311c3914df989ee3ff17a824ed6 295 Pfam PF03668 P-loop ATPase protein family 11 288 5.3E-81 T 23-04-2016 IPR005337 RapZ-like family GO:0005524 RD1_RS03800 07e5d4f37fa45a4054908be7fb1aad39 119 PANTHER PTHR40943:SF1 21 119 6.0E-22 T 23-04-2016 RD1_RS03800 07e5d4f37fa45a4054908be7fb1aad39 119 Pfam PF05899 Protein of unknown function (DUF861) 39 111 4.7E-20 T 23-04-2016 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 RD1_RS03800 07e5d4f37fa45a4054908be7fb1aad39 119 PANTHER PTHR40943 21 119 6.0E-22 T 23-04-2016 RD1_RS03800 07e5d4f37fa45a4054908be7fb1aad39 119 SUPERFAMILY SSF51182 4 113 4.11E-19 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS03800 07e5d4f37fa45a4054908be7fb1aad39 119 Gene3D G3DSA:2.60.120.10 21 115 3.0E-31 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS12175 fa29e90db987eadbb633aea4be8b604c 265 PANTHER PTHR24220 19 264 5.1E-138 T 23-04-2016 RD1_RS12175 fa29e90db987eadbb633aea4be8b604c 265 SMART SM00382 42 236 1.3E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS12175 fa29e90db987eadbb633aea4be8b604c 265 PANTHER PTHR24220:SF585 19 264 5.1E-138 T 23-04-2016 RD1_RS12175 fa29e90db987eadbb633aea4be8b604c 265 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 18 265 1.3E-121 T 23-04-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 RD1_RS12175 fa29e90db987eadbb633aea4be8b604c 265 SUPERFAMILY SSF52540 18 252 4.09E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12175 fa29e90db987eadbb633aea4be8b604c 265 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS12175 fa29e90db987eadbb633aea4be8b604c 265 Pfam PF00005 ABC transporter 34 189 8.8E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS12175 fa29e90db987eadbb633aea4be8b604c 265 Gene3D G3DSA:3.40.50.300 18 260 7.3E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11210 aedb25959128dd913ce6ee4e3375c3b3 482 SUPERFAMILY SSF103473 276 470 1.7E-48 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS11210 aedb25959128dd913ce6ee4e3375c3b3 482 SUPERFAMILY SSF103473 12 207 1.7E-48 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS11210 aedb25959128dd913ce6ee4e3375c3b3 482 Pfam PF07690 Major Facilitator Superfamily 21 249 1.1E-18 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS11210 aedb25959128dd913ce6ee4e3375c3b3 482 Pfam PF07690 Major Facilitator Superfamily 299 471 4.6E-11 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS11210 aedb25959128dd913ce6ee4e3375c3b3 482 Gene3D G3DSA:1.20.1250.20 293 470 5.6E-21 T 23-04-2016 RD1_RS11210 aedb25959128dd913ce6ee4e3375c3b3 482 PANTHER PTHR23515:SF2 6 215 1.3E-82 T 23-04-2016 RD1_RS11210 aedb25959128dd913ce6ee4e3375c3b3 482 PANTHER PTHR23515:SF2 284 447 1.3E-82 T 23-04-2016 RD1_RS11210 aedb25959128dd913ce6ee4e3375c3b3 482 Gene3D G3DSA:1.20.1250.20 14 201 3.8E-22 T 23-04-2016 RD1_RS11210 aedb25959128dd913ce6ee4e3375c3b3 482 PANTHER PTHR23515 6 215 1.3E-82 T 23-04-2016 RD1_RS11210 aedb25959128dd913ce6ee4e3375c3b3 482 PANTHER PTHR23515 284 447 1.3E-82 T 23-04-2016 RD1_RS15935 da5c53d47297eac4aa4efb716116c18d 389 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 51 62 1.2E-14 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RD1_RS15935 da5c53d47297eac4aa4efb716116c18d 389 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 137 150 1.2E-14 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RD1_RS15935 da5c53d47297eac4aa4efb716116c18d 389 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 108 125 1.2E-14 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RD1_RS15935 da5c53d47297eac4aa4efb716116c18d 389 SUPERFAMILY SSF69189 273 365 4.51E-20 T 23-04-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS15935 da5c53d47297eac4aa4efb716116c18d 389 SUPERFAMILY SSF56601 4 273 1.11E-73 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS15935 da5c53d47297eac4aa4efb716116c18d 389 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 273 362 1.5E-15 T 23-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS15935 da5c53d47297eac4aa4efb716116c18d 389 Gene3D G3DSA:2.60.410.10 273 362 2.4E-21 T 23-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS15935 da5c53d47297eac4aa4efb716116c18d 389 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 17 251 1.0E-59 T 23-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RD1_RS15935 da5c53d47297eac4aa4efb716116c18d 389 PANTHER PTHR21581 22 389 3.4E-86 T 23-04-2016 RD1_RS15935 da5c53d47297eac4aa4efb716116c18d 389 Gene3D G3DSA:3.40.710.10 4 272 2.2E-88 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS15935 da5c53d47297eac4aa4efb716116c18d 389 SMART SM00936 273 363 1.9E-27 T 23-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS15935 da5c53d47297eac4aa4efb716116c18d 389 PANTHER PTHR21581:SF3 22 389 3.4E-86 T 23-04-2016 RD1_RS05290 c73f360ef35a53c99d29e126495856e0 91 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 7 87 4.6E-24 T 23-04-2016 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 UniPathway: UPA00539 RD1_RS05290 c73f360ef35a53c99d29e126495856e0 91 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 24 87 2.6E-14 T 23-04-2016 IPR008792 Coenzyme PQQ synthesis D UniPathway: UPA00539 RD1_RS02295 e3314d9984499b71f4ee79266d4db259 168 Pfam PF02469 Fasciclin domain 45 167 1.0E-34 T 23-04-2016 IPR000782 FAS1 domain RD1_RS02295 e3314d9984499b71f4ee79266d4db259 168 PANTHER PTHR10900 28 168 4.3E-49 T 23-04-2016 RD1_RS02295 e3314d9984499b71f4ee79266d4db259 168 SMART SM00554 69 168 7.6E-34 T 23-04-2016 IPR000782 FAS1 domain RD1_RS02295 e3314d9984499b71f4ee79266d4db259 168 SUPERFAMILY SSF82153 32 167 7.32E-39 T 23-04-2016 IPR000782 FAS1 domain RD1_RS02295 e3314d9984499b71f4ee79266d4db259 168 Gene3D G3DSA:2.30.180.10 35 167 3.1E-41 T 23-04-2016 IPR000782 FAS1 domain RD1_RS18140 a5643e1743bc50f03ccfb827f0f36842 140 PANTHER PTHR12418 10 140 2.3E-29 T 23-04-2016 RD1_RS18140 a5643e1743bc50f03ccfb827f0f36842 140 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 19 122 2.6E-21 T 23-04-2016 IPR003736 Phenylacetic acid degradation-related domain RD1_RS18140 a5643e1743bc50f03ccfb827f0f36842 140 SUPERFAMILY SSF54637 5 136 1.75E-35 T 23-04-2016 IPR029069 HotDog domain RD1_RS18140 a5643e1743bc50f03ccfb827f0f36842 140 Pfam PF03061 Thioesterase superfamily 50 124 2.0E-17 T 23-04-2016 IPR006683 Thioesterase domain RD1_RS18140 a5643e1743bc50f03ccfb827f0f36842 140 PANTHER PTHR12418:SF18 10 140 2.3E-29 T 23-04-2016 RD1_RS18140 a5643e1743bc50f03ccfb827f0f36842 140 Gene3D G3DSA:3.10.129.10 8 136 9.2E-39 T 23-04-2016 IPR029069 HotDog domain RD1_RS18730 f8cfea493169b39065df1b22bb67bbb8 312 PANTHER PTHR24220 6 242 5.5E-106 T 23-04-2016 RD1_RS18730 f8cfea493169b39065df1b22bb67bbb8 312 SMART SM00382 30 211 3.8E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS18730 f8cfea493169b39065df1b22bb67bbb8 312 Gene3D G3DSA:3.40.50.300 2 232 7.2E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18730 f8cfea493169b39065df1b22bb67bbb8 312 Pfam PF00005 ABC transporter 21 163 6.3E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS18730 f8cfea493169b39065df1b22bb67bbb8 312 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS18730 f8cfea493169b39065df1b22bb67bbb8 312 PANTHER PTHR24220:SF305 6 242 5.5E-106 T 23-04-2016 RD1_RS18730 f8cfea493169b39065df1b22bb67bbb8 312 SUPERFAMILY SSF52540 3 230 3.34E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 SUPERFAMILY SSF50249 109 187 4.33E-12 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 SMART SM00316 278 350 1.9E-23 T 23-04-2016 IPR022967 RNA-binding domain, S1 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 SMART SM00316 365 437 4.9E-21 T 23-04-2016 IPR022967 RNA-binding domain, S1 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 SMART SM00316 106 174 8.2E-4 T 23-04-2016 IPR022967 RNA-binding domain, S1 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 SMART SM00316 22 90 3.0E-10 T 23-04-2016 IPR022967 RNA-binding domain, S1 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 SMART SM00316 452 522 2.5E-16 T 23-04-2016 IPR022967 RNA-binding domain, S1 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 SMART SM00316 193 263 6.1E-27 T 23-04-2016 IPR022967 RNA-binding domain, S1 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 PRINTS PR00681 Ribosomal protein S1 signature 24 42 4.13E-80 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 PRINTS PR00681 Ribosomal protein S1 signature 111 127 4.13E-80 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 PRINTS PR00681 Ribosomal protein S1 signature 158 178 4.13E-80 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 PRINTS PR00681 Ribosomal protein S1 signature 129 146 4.13E-80 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 PRINTS PR00681 Ribosomal protein S1 signature 87 106 4.13E-80 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 PRINTS PR00681 Ribosomal protein S1 signature 333 351 4.13E-80 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 PRINTS PR00681 Ribosomal protein S1 signature 215 236 4.13E-80 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 PRINTS PR00681 Ribosomal protein S1 signature 293 312 4.13E-80 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 PRINTS PR00681 Ribosomal protein S1 signature 42 56 4.13E-80 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 SUPERFAMILY SSF50249 193 280 1.22E-26 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 Pfam PF00575 S1 RNA binding domain 107 174 2.9E-9 T 23-04-2016 IPR003029 S1 domain GO:0003676 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 Pfam PF00575 S1 RNA binding domain 364 437 7.8E-22 T 23-04-2016 IPR003029 S1 domain GO:0003676 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 Pfam PF00575 S1 RNA binding domain 194 263 3.4E-20 T 23-04-2016 IPR003029 S1 domain GO:0003676 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 Pfam PF00575 S1 RNA binding domain 452 522 9.5E-15 T 23-04-2016 IPR003029 S1 domain GO:0003676 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 Pfam PF00575 S1 RNA binding domain 280 350 7.8E-18 T 23-04-2016 IPR003029 S1 domain GO:0003676 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 Pfam PF00575 S1 RNA binding domain 21 89 7.3E-9 T 23-04-2016 IPR003029 S1 domain GO:0003676 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 PANTHER PTHR10724:SF6 1 516 3.0E-213 T 23-04-2016 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 SUPERFAMILY SSF50249 452 536 6.94E-18 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 PIRSF PIRSF002111 1 536 2.8E-196 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 SUPERFAMILY SSF50249 350 438 1.12E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 Gene3D G3DSA:2.40.50.140 195 279 2.1E-29 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 Gene3D G3DSA:2.40.50.140 280 360 2.7E-27 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 SUPERFAMILY SSF50249 10 115 7.09E-18 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 PANTHER PTHR10724 1 516 3.0E-213 T 23-04-2016 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 SUPERFAMILY SSF50249 276 372 3.36E-24 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 Gene3D G3DSA:2.40.50.140 100 175 8.1E-12 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 Gene3D G3DSA:2.40.50.140 450 523 8.1E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 Gene3D G3DSA:2.40.50.140 361 438 1.7E-24 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 7 522 1.6E-190 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RD1_RS17905 eea70ef1e556ffea0c3f80cb4994366e 559 Gene3D G3DSA:2.40.50.140 19 99 1.1E-11 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS02660 fed0f40e1635dc97070e62efab1af6df 364 SUPERFAMILY SSF52540 124 297 4.93E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02660 fed0f40e1635dc97070e62efab1af6df 364 SUPERFAMILY SSF52540 2 51 4.93E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02660 fed0f40e1635dc97070e62efab1af6df 364 Gene3D G3DSA:3.40.50.300 3 85 3.0E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02660 fed0f40e1635dc97070e62efab1af6df 364 Gene3D G3DSA:3.40.50.300 134 244 3.0E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02660 fed0f40e1635dc97070e62efab1af6df 364 Pfam PF13469 Sulfotransferase family 3 39 1.7E-6 T 23-04-2016 RD1_RS07430 c127d4ba6caf3b55c60413da123c554c 168 PANTHER PTHR34980 117 163 4.4E-13 T 23-04-2016 RD1_RS07430 c127d4ba6caf3b55c60413da123c554c 168 PANTHER PTHR34980 14 99 4.4E-13 T 23-04-2016 RD1_RS07430 c127d4ba6caf3b55c60413da123c554c 168 Pfam PF05656 Protein of unknown function (DUF805) 14 163 1.2E-26 T 23-04-2016 IPR008523 Protein of unknown function DUF805 GO:0016021 RD1_RS12350 bf29992697889fd9d57da093205846c7 816 PANTHER PTHR11999:SF103 651 780 4.1E-102 T 23-04-2016 RD1_RS12350 bf29992697889fd9d57da093205846c7 816 PANTHER PTHR11999:SF103 12 215 4.1E-102 T 23-04-2016 RD1_RS12350 bf29992697889fd9d57da093205846c7 816 PANTHER PTHR11999:SF103 294 416 4.1E-102 T 23-04-2016 RD1_RS12350 bf29992697889fd9d57da093205846c7 816 PANTHER PTHR11999:SF103 479 599 4.1E-102 T 23-04-2016 RD1_RS12350 bf29992697889fd9d57da093205846c7 816 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 302 410 9.6E-11 T 23-04-2016 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 RD1_RS12350 bf29992697889fd9d57da093205846c7 816 Gene3D G3DSA:3.40.640.10 482 553 4.5E-83 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS12350 bf29992697889fd9d57da093205846c7 816 Gene3D G3DSA:3.40.640.10 288 414 4.5E-83 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS12350 bf29992697889fd9d57da093205846c7 816 Gene3D G3DSA:3.40.640.10 127 206 4.5E-83 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS12350 bf29992697889fd9d57da093205846c7 816 PANTHER PTHR11999 651 780 4.1E-102 T 23-04-2016 RD1_RS12350 bf29992697889fd9d57da093205846c7 816 PANTHER PTHR11999 12 215 4.1E-102 T 23-04-2016 RD1_RS12350 bf29992697889fd9d57da093205846c7 816 PANTHER PTHR11999 294 416 4.1E-102 T 23-04-2016 RD1_RS12350 bf29992697889fd9d57da093205846c7 816 PANTHER PTHR11999 479 599 4.1E-102 T 23-04-2016 RD1_RS12350 bf29992697889fd9d57da093205846c7 816 SUPERFAMILY SSF53383 283 406 1.1E-54 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS12350 bf29992697889fd9d57da093205846c7 816 SUPERFAMILY SSF53383 474 588 1.1E-54 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS12350 bf29992697889fd9d57da093205846c7 816 SUPERFAMILY SSF53383 49 206 1.1E-54 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS06480 b255c259b947eecdc4cbdde78bf929f8 205 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 201 3.9E-63 T 23-04-2016 IPR013005 50S ribosomal protein uL4 RD1_RS06480 b255c259b947eecdc4cbdde78bf929f8 205 Pfam PF00573 Ribosomal protein L4/L1 family 16 202 5.0E-57 T 23-04-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 RD1_RS06480 b255c259b947eecdc4cbdde78bf929f8 205 Gene3D G3DSA:3.40.1370.10 59 205 6.9E-48 T 23-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 RD1_RS06480 b255c259b947eecdc4cbdde78bf929f8 205 SUPERFAMILY SSF52166 1 204 2.49E-66 T 23-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 RD1_RS06480 b255c259b947eecdc4cbdde78bf929f8 205 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 205 29.116 T 23-04-2016 IPR013005 50S ribosomal protein uL4 RD1_RS06480 b255c259b947eecdc4cbdde78bf929f8 205 PANTHER PTHR10746 1 204 5.0E-81 T 23-04-2016 IPR013005 50S ribosomal protein uL4 RD1_RS11380 41b8eb48e12503fb5b9d9cb591b7a347 374 PANTHER PTHR21716 16 353 2.7E-48 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like RD1_RS11380 41b8eb48e12503fb5b9d9cb591b7a347 374 Pfam PF01594 Domain of unknown function DUF20 17 337 3.0E-35 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like RD1_RS11380 41b8eb48e12503fb5b9d9cb591b7a347 374 PANTHER PTHR21716:SF16 16 353 2.7E-48 T 23-04-2016 RD1_RS05495 49126bd4c38d72824be1e3b66062153e 313 Gene3D G3DSA:3.40.50.20 1 127 5.2E-49 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS05495 49126bd4c38d72824be1e3b66062153e 313 Gene3D G3DSA:3.30.470.20 190 297 4.0E-46 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS05495 49126bd4c38d72824be1e3b66062153e 313 SUPERFAMILY SSF56059 122 309 1.02E-58 T 23-04-2016 RD1_RS05495 49126bd4c38d72824be1e3b66062153e 313 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 1 118 7.5E-41 T 23-04-2016 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RD1_RS05495 49126bd4c38d72824be1e3b66062153e 313 Hamap MF_00162 Glutathione synthetase [gshB]. 1 313 156.413 T 23-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RD1_RS05495 49126bd4c38d72824be1e3b66062153e 313 SUPERFAMILY SSF52440 1 120 4.03E-40 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS05495 49126bd4c38d72824be1e3b66062153e 313 TIGRFAM TIGR01380 glut_syn: glutathione synthase 1 308 1.1E-122 T 23-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RD1_RS05495 49126bd4c38d72824be1e3b66062153e 313 PANTHER PTHR21621:SF4 1 309 4.4E-110 T 23-04-2016 RD1_RS05495 49126bd4c38d72824be1e3b66062153e 313 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 122 293 6.4E-71 T 23-04-2016 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RD1_RS05495 49126bd4c38d72824be1e3b66062153e 313 Gene3D G3DSA:3.30.1490.20 135 189 3.9E-25 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS05495 49126bd4c38d72824be1e3b66062153e 313 PANTHER PTHR21621 1 309 4.4E-110 T 23-04-2016 RD1_RS18990 22ee994c1a041e2ed646d397de79a1a4 472 Pfam PF00860 Permease family 23 408 2.1E-83 T 23-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 RD1_RS18990 22ee994c1a041e2ed646d397de79a1a4 472 TIGRFAM TIGR03173 pbuX: xanthine permease 27 445 3.1E-128 T 23-04-2016 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 RD1_RS18990 22ee994c1a041e2ed646d397de79a1a4 472 PANTHER PTHR11119 19 448 8.2E-91 T 23-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 RD1_RS18990 22ee994c1a041e2ed646d397de79a1a4 472 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 19 443 1.6E-98 T 23-04-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 PIRSF PIRSF005496 1 813 1.1E-283 T 23-04-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 Gene3D G3DSA:3.40.50.300 4 162 5.3E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 Pfam PF08482 ATP-dependent helicase C-terminal 670 799 3.1E-48 T 23-04-2016 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 SMART SM00487 3 186 2.2E-19 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 5 811 1.1E-271 T 23-04-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 Pfam PF00270 DEAD/DEAH box helicase 14 165 6.0E-10 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 SMART SM00490 228 329 4.9E-10 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 PANTHER PTHR18934 4 447 2.6E-116 T 23-04-2016 RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 PANTHER PTHR18934 759 766 2.6E-116 T 23-04-2016 RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 PANTHER PTHR18934:SF118 4 447 2.6E-116 T 23-04-2016 RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 PANTHER PTHR18934:SF118 759 766 2.6E-116 T 23-04-2016 RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 Pfam PF04408 Helicase associated domain (HA2) 390 466 1.2E-8 T 23-04-2016 IPR007502 Helicase-associated domain GO:0004386 RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 Pfam PF00271 Helicase conserved C-terminal domain 207 328 5.9E-9 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 SUPERFAMILY SSF52540 14 340 5.46E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 SMART SM00847 388 481 1.3E-11 T 23-04-2016 IPR007502 Helicase-associated domain GO:0004386 RD1_RS07755 1ddca79509a76abf372120215ae92ba1 813 Gene3D G3DSA:3.40.50.300 204 342 7.8E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17235 44f5c674ce71d39ba2ea286b1be1c5f5 280 Gene3D G3DSA:3.20.20.140 2 279 1.6E-75 T 23-04-2016 RD1_RS17235 44f5c674ce71d39ba2ea286b1be1c5f5 280 Pfam PF04909 Amidohydrolase 3 279 4.7E-38 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RD1_RS17235 44f5c674ce71d39ba2ea286b1be1c5f5 280 PANTHER PTHR21240 1 279 1.7E-67 T 23-04-2016 RD1_RS17235 44f5c674ce71d39ba2ea286b1be1c5f5 280 SUPERFAMILY SSF51556 3 279 2.65E-71 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS17235 44f5c674ce71d39ba2ea286b1be1c5f5 280 PANTHER PTHR21240:SF1 1 279 1.7E-67 T 23-04-2016 RD1_RS15575 06eeea94f6526e24223d0fe940149268 280 PANTHER PTHR33121 29 262 4.4E-45 T 23-04-2016 RD1_RS15575 06eeea94f6526e24223d0fe940149268 280 PANTHER PTHR33121:SF10 29 262 4.4E-45 T 23-04-2016 RD1_RS15575 06eeea94f6526e24223d0fe940149268 280 SMART SM00052 27 269 1.3E-47 T 23-04-2016 IPR001633 EAL domain RD1_RS15575 06eeea94f6526e24223d0fe940149268 280 Gene3D G3DSA:3.20.20.450 35 267 3.9E-60 T 23-04-2016 IPR001633 EAL domain RD1_RS15575 06eeea94f6526e24223d0fe940149268 280 Pfam PF00563 EAL domain 34 263 1.8E-54 T 23-04-2016 IPR001633 EAL domain RD1_RS15575 06eeea94f6526e24223d0fe940149268 280 SUPERFAMILY SSF141868 34 270 2.88E-62 T 23-04-2016 IPR001633 EAL domain RD1_RS06685 8f17986e4bb69099dc0ab364534394bb 236 Gene3D G3DSA:1.10.3580.10 66 231 1.1E-51 T 23-04-2016 IPR023335 Orthogonal Bundle domain in ATP12 RD1_RS06685 8f17986e4bb69099dc0ab364534394bb 236 Pfam PF07542 ATP12 chaperone protein 7 124 1.9E-34 T 23-04-2016 IPR011419 ATP12, ATPase F1F0-assembly protein GO:0043461 RD1_RS06685 8f17986e4bb69099dc0ab364534394bb 236 SUPERFAMILY SSF160909 1 231 4.84E-79 T 23-04-2016 RD1_RS06685 8f17986e4bb69099dc0ab364534394bb 236 Gene3D G3DSA:3.30.2180.10 2 64 1.6E-20 T 23-04-2016 RD1_RS06685 8f17986e4bb69099dc0ab364534394bb 236 PANTHER PTHR21013 7 209 3.9E-50 T 23-04-2016 IPR011419 ATP12, ATPase F1F0-assembly protein GO:0043461 RD1_RS11585 43fedd735b798a1be6ba8baadd47bc94 198 SUPERFAMILY SSF101874 26 194 2.62E-28 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS11585 43fedd735b798a1be6ba8baadd47bc94 198 Gene3D G3DSA:2.40.128.110 26 195 2.7E-29 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS11585 43fedd735b798a1be6ba8baadd47bc94 198 SMART SM00867 28 195 1.4E-28 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS11585 43fedd735b798a1be6ba8baadd47bc94 198 PANTHER PTHR34406:SF1 7 197 5.3E-19 T 23-04-2016 RD1_RS11585 43fedd735b798a1be6ba8baadd47bc94 198 Pfam PF04264 YceI-like domain 29 193 7.2E-22 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS11585 43fedd735b798a1be6ba8baadd47bc94 198 PANTHER PTHR34406 7 197 5.3E-19 T 23-04-2016 RD1_RS00670 93652260b529e4b0fa58ef08d66a62ce 392 SUPERFAMILY SSF51905 246 356 6.02E-40 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00670 93652260b529e4b0fa58ef08d66a62ce 392 SUPERFAMILY SSF51905 1 159 6.02E-40 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00670 93652260b529e4b0fa58ef08d66a62ce 392 TIGRFAM TIGR02032 GG-red-SF: geranylgeranyl reductase family 2 294 6.8E-83 T 23-04-2016 IPR011777 Geranylgeranyl reductase family GO:0016628|GO:0055114 RD1_RS00670 93652260b529e4b0fa58ef08d66a62ce 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 138 153 1.1E-12 T 23-04-2016 RD1_RS00670 93652260b529e4b0fa58ef08d66a62ce 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 260 275 1.1E-12 T 23-04-2016 RD1_RS00670 93652260b529e4b0fa58ef08d66a62ce 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 1.1E-12 T 23-04-2016 RD1_RS00670 93652260b529e4b0fa58ef08d66a62ce 392 Pfam PF03486 HI0933-like protein 2 35 3.5E-5 T 23-04-2016 RD1_RS00670 93652260b529e4b0fa58ef08d66a62ce 392 Gene3D G3DSA:3.40.50.720 81 150 1.7E-17 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00670 93652260b529e4b0fa58ef08d66a62ce 392 Gene3D G3DSA:3.40.50.720 2 46 1.7E-17 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00670 93652260b529e4b0fa58ef08d66a62ce 392 Pfam PF01494 FAD binding domain 52 294 2.6E-12 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 RD1_RS00670 93652260b529e4b0fa58ef08d66a62ce 392 Gene3D G3DSA:3.30.9.10 151 306 1.2E-40 T 23-04-2016 RD1_RS00670 93652260b529e4b0fa58ef08d66a62ce 392 PANTHER PTHR10617 1 381 1.1E-64 T 23-04-2016 RD1_RS00670 93652260b529e4b0fa58ef08d66a62ce 392 PANTHER PTHR10617:SF101 1 381 1.1E-64 T 23-04-2016 RD1_RS00670 93652260b529e4b0fa58ef08d66a62ce 392 TIGRFAM TIGR02023 BchP-ChlP: geranylgeranyl reductase 2 384 4.9E-156 T 23-04-2016 IPR010253 Geranylgeranyl reductase, plant/prokaryotic GO:0015979|GO:0015995|GO:0045550|GO:0055114 KEGG: 00900+1.3.1.83|UniPathway: UPA00668 RD1_RS05735 7e47688fdc3d1f97947b2a3dd6755c66 122 Gene3D G3DSA:1.10.3680.10 3 106 3.1E-4 T 23-04-2016 IPR029024 TerB-like RD1_RS05735 7e47688fdc3d1f97947b2a3dd6755c66 122 SUPERFAMILY SSF158682 1 117 3.4E-9 T 23-04-2016 IPR029024 TerB-like RD1_RS08940 9b674cb8418adc3e09f7ac0a0116fbb5 302 SUPERFAMILY SSF103481 196 300 1.96E-12 T 23-04-2016 RD1_RS08940 9b674cb8418adc3e09f7ac0a0116fbb5 302 Pfam PF00892 EamA-like transporter family 165 298 2.0E-13 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS08940 9b674cb8418adc3e09f7ac0a0116fbb5 302 Pfam PF00892 EamA-like transporter family 18 144 3.7E-6 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS08940 9b674cb8418adc3e09f7ac0a0116fbb5 302 SUPERFAMILY SSF103481 55 146 1.44E-13 T 23-04-2016 RD1_RS08940 9b674cb8418adc3e09f7ac0a0116fbb5 302 PANTHER PTHR22911:SF61 1 300 1.9E-26 T 23-04-2016 RD1_RS08940 9b674cb8418adc3e09f7ac0a0116fbb5 302 PANTHER PTHR22911 1 300 1.9E-26 T 23-04-2016 RD1_RS09890 2c1ef90530b1b1f5631d14b7092169fa 460 Gene3D G3DSA:3.40.50.1100 202 434 1.0E-86 T 23-04-2016 RD1_RS09890 2c1ef90530b1b1f5631d14b7092169fa 460 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 97 393 1.1E-15 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS09890 2c1ef90530b1b1f5631d14b7092169fa 460 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 102 116 - T 23-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RD1_RS09890 2c1ef90530b1b1f5631d14b7092169fa 460 PANTHER PTHR10314:SF1 53 330 5.6E-152 T 23-04-2016 RD1_RS09890 2c1ef90530b1b1f5631d14b7092169fa 460 PANTHER PTHR10314:SF1 360 456 5.6E-152 T 23-04-2016 RD1_RS09890 2c1ef90530b1b1f5631d14b7092169fa 460 PANTHER PTHR10314:SF1 25 36 5.6E-152 T 23-04-2016 RD1_RS09890 2c1ef90530b1b1f5631d14b7092169fa 460 SUPERFAMILY SSF53686 1 459 4.11E-158 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS09890 2c1ef90530b1b1f5631d14b7092169fa 460 Gene3D G3DSA:3.40.50.1100 111 201 2.2E-7 T 23-04-2016 RD1_RS09890 2c1ef90530b1b1f5631d14b7092169fa 460 TIGRFAM TIGR00260 thrC: threonine synthase 69 424 1.1E-82 T 23-04-2016 IPR004450 Threonine synthase-like RD1_RS09890 2c1ef90530b1b1f5631d14b7092169fa 460 Gene3D G3DSA:3.90.1380.10 1 83 7.1E-29 T 23-04-2016 IPR029144 Threonine synthase, N-terminal RD1_RS09890 2c1ef90530b1b1f5631d14b7092169fa 460 PANTHER PTHR10314 53 330 5.6E-152 T 23-04-2016 RD1_RS09890 2c1ef90530b1b1f5631d14b7092169fa 460 PANTHER PTHR10314 360 456 5.6E-152 T 23-04-2016 RD1_RS09890 2c1ef90530b1b1f5631d14b7092169fa 460 PANTHER PTHR10314 25 36 5.6E-152 T 23-04-2016 RD1_RS09890 2c1ef90530b1b1f5631d14b7092169fa 460 Pfam PF14821 Threonine synthase N terminus 2 80 1.1E-27 T 23-04-2016 IPR029144 Threonine synthase, N-terminal RD1_RS14930 d5ed6557a5ea999c8e44cfcaed9b33c2 281 PANTHER PTHR13779:SF28 25 183 1.6E-83 T 23-04-2016 RD1_RS14930 d5ed6557a5ea999c8e44cfcaed9b33c2 281 PANTHER PTHR13779:SF28 206 280 1.6E-83 T 23-04-2016 RD1_RS14930 d5ed6557a5ea999c8e44cfcaed9b33c2 281 Pfam PF05673 Protein of unknown function (DUF815) 28 274 1.4E-104 T 23-04-2016 IPR008533 Domain of unknown function DUF815 RD1_RS14930 d5ed6557a5ea999c8e44cfcaed9b33c2 281 Gene3D G3DSA:3.40.50.300 58 211 7.3E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14930 d5ed6557a5ea999c8e44cfcaed9b33c2 281 SUPERFAMILY SSF52540 38 245 4.32E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14930 d5ed6557a5ea999c8e44cfcaed9b33c2 281 PANTHER PTHR13779 25 183 1.6E-83 T 23-04-2016 RD1_RS14930 d5ed6557a5ea999c8e44cfcaed9b33c2 281 PANTHER PTHR13779 206 280 1.6E-83 T 23-04-2016 RD1_RS15200 e00ce647661afdc6dd25efc38e3ccd96 431 PANTHER PTHR23417:SF2 196 427 1.9E-79 T 23-04-2016 RD1_RS15200 e00ce647661afdc6dd25efc38e3ccd96 431 PANTHER PTHR23417:SF2 136 146 1.9E-79 T 23-04-2016 RD1_RS15200 e00ce647661afdc6dd25efc38e3ccd96 431 PANTHER PTHR23417:SF2 1 117 1.9E-79 T 23-04-2016 RD1_RS15200 e00ce647661afdc6dd25efc38e3ccd96 431 SUPERFAMILY SSF53756 58 412 2.98E-13 T 23-04-2016 RD1_RS15200 e00ce647661afdc6dd25efc38e3ccd96 431 PANTHER PTHR23417 196 427 1.9E-79 T 23-04-2016 RD1_RS15200 e00ce647661afdc6dd25efc38e3ccd96 431 PANTHER PTHR23417 136 146 1.9E-79 T 23-04-2016 RD1_RS15200 e00ce647661afdc6dd25efc38e3ccd96 431 PANTHER PTHR23417 1 117 1.9E-79 T 23-04-2016 RD1_RS15200 e00ce647661afdc6dd25efc38e3ccd96 431 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 40 214 8.8E-49 T 23-04-2016 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675|UniPathway: UPA00958 RD1_RS07800 3a4b8d961576281f7ae1c907bc526306 340 Pfam PF10150 Ribonuclease E/G family 101 177 7.2E-11 T 23-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 RD1_RS07800 3a4b8d961576281f7ae1c907bc526306 340 Pfam PF10150 Ribonuclease E/G family 210 330 1.1E-17 T 23-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 RD1_RS07800 3a4b8d961576281f7ae1c907bc526306 340 PANTHER PTHR30001 75 339 4.5E-23 T 23-04-2016 RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 Gene3D G3DSA:3.40.50.720 140 271 5.3E-55 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 SUPERFAMILY SSF51735 123 287 9.23E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 267 275 - T 23-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 290 38.123 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 125 288 7.2E-66 T 23-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 Gene3D G3DSA:3.40.192.10 7 139 3.0E-50 T 23-04-2016 RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 1.4E-41 T 23-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 6.8E-81 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 263 281 6.8E-81 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 246 262 6.8E-81 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 6.8E-81 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 6.8E-81 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 6.8E-81 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 6.8E-81 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 23-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 PANTHER PTHR10025 1 294 9.1E-161 T 23-04-2016 RD1_RS19385 47e7fb4cb67b853e723ed41ce71b5cad 300 SUPERFAMILY SSF53223 1 122 7.0E-42 T 23-04-2016 RD1_RS18400 1d1cda3d4aa12c33e6b1b4c29cd70cc3 171 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 2 140 1.0E-7 T 23-04-2016 RD1_RS18400 1d1cda3d4aa12c33e6b1b4c29cd70cc3 171 ProSitePatterns PS01109 Ribosomal protein L10 signature. 6 40 - T 23-04-2016 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS18400 1d1cda3d4aa12c33e6b1b4c29cd70cc3 171 SUPERFAMILY SSF160369 3 168 5.1E-52 T 23-04-2016 RD1_RS18400 1d1cda3d4aa12c33e6b1b4c29cd70cc3 171 PANTHER PTHR11560 3 170 2.4E-50 T 23-04-2016 RD1_RS18400 1d1cda3d4aa12c33e6b1b4c29cd70cc3 171 Pfam PF00466 Ribosomal protein L10 3 98 7.7E-24 T 23-04-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 RD1_RS18400 1d1cda3d4aa12c33e6b1b4c29cd70cc3 171 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 158 24.86 T 23-04-2016 IPR022973 Ribosomal protein L10 RD1_RS07005 6c1ead7d510abefbba6d08a117b4ee69 110 TIGRFAM TIGR04490 SoxZ_true: thiosulfate oxidation carrier complex protein SoxZ 14 105 7.1E-33 T 23-04-2016 IPR030995 Thiosulfate oxidation carrier complex protein SoxZ RD1_RS07005 6c1ead7d510abefbba6d08a117b4ee69 110 SUPERFAMILY SSF81296 6 106 2.66E-33 T 23-04-2016 IPR014756 Immunoglobulin E-set RD1_RS07005 6c1ead7d510abefbba6d08a117b4ee69 110 Pfam PF08770 Sulphur oxidation protein SoxZ 14 103 4.7E-30 T 23-04-2016 IPR014880 Sulphur oxidation protein SoxZ RD1_RS07005 6c1ead7d510abefbba6d08a117b4ee69 110 Gene3D G3DSA:2.60.40.10 6 107 2.3E-36 T 23-04-2016 IPR013783 Immunoglobulin-like fold RD1_RS00535 9b9544f4737261240e0cfd3bfcc10f6a 160 PIRSF PIRSF005859 1 149 3.9E-42 T 23-04-2016 IPR004307 TspO/MBR-related protein GO:0016021 RD1_RS00535 9b9544f4737261240e0cfd3bfcc10f6a 160 Pfam PF03073 TspO/MBR family 9 146 3.3E-37 T 23-04-2016 IPR004307 TspO/MBR-related protein GO:0016021 RD1_RS00535 9b9544f4737261240e0cfd3bfcc10f6a 160 PANTHER PTHR10057 3 156 3.5E-29 T 23-04-2016 IPR004307 TspO/MBR-related protein GO:0016021 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 Gene3D G3DSA:3.40.190.10 22 135 2.2E-21 T 23-04-2016 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 26 42 6.3E-56 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 69 83 6.3E-56 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 209 228 6.3E-56 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 85 98 6.3E-56 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 304 330 6.3E-56 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 172 191 6.3E-56 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 118 134 6.3E-56 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 259 278 6.3E-56 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 42 63 6.3E-56 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 PANTHER PTHR30222 1 359 1.3E-141 T 23-04-2016 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 Gene3D G3DSA:3.40.190.10 136 309 6.6E-65 T 23-04-2016 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 PIRSF PIRSF019574 1 360 1.5E-129 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 PANTHER PTHR30222:SF11 1 359 1.3E-141 T 23-04-2016 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 SUPERFAMILY SSF53850 21 359 1.17E-94 T 23-04-2016 RD1_RS00790 2962e2121f99405c05cee957b21b23d4 360 Pfam PF13416 Bacterial extracellular solute-binding protein 36 311 3.9E-23 T 23-04-2016 RD1_RS10555 f7b109ebca15222849bade72e0b0cc16 330 Pfam PF00107 Zinc-binding dehydrogenase 161 270 1.1E-12 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RD1_RS10555 f7b109ebca15222849bade72e0b0cc16 330 PANTHER PTHR11695 18 329 2.4E-148 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS10555 f7b109ebca15222849bade72e0b0cc16 330 PANTHER PTHR11695:SF13 18 329 2.4E-148 T 23-04-2016 IPR014188 Acrylyl-CoA reductase AcuI RD1_RS10555 f7b109ebca15222849bade72e0b0cc16 330 Gene3D G3DSA:3.90.180.10 16 136 9.7E-8 T 23-04-2016 IPR011032 GroES-like RD1_RS10555 f7b109ebca15222849bade72e0b0cc16 330 Gene3D G3DSA:3.40.50.720 137 296 4.9E-71 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS10555 f7b109ebca15222849bade72e0b0cc16 330 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 3 328 2.8E-136 T 23-04-2016 IPR014188 Acrylyl-CoA reductase AcuI RD1_RS10555 f7b109ebca15222849bade72e0b0cc16 330 SMART SM00829 15 326 8.0E-5 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RD1_RS10555 f7b109ebca15222849bade72e0b0cc16 330 SUPERFAMILY SSF51735 118 293 9.23E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS10555 f7b109ebca15222849bade72e0b0cc16 330 SUPERFAMILY SSF50129 3 147 6.24E-41 T 23-04-2016 IPR011032 GroES-like RD1_RS05660 d95df7f510d9d2507c45540634db6f5e 212 SUPERFAMILY SSF52266 20 205 9.47E-44 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RD1_RS05660 d95df7f510d9d2507c45540634db6f5e 212 PANTHER PTHR30383 23 208 4.9E-35 T 23-04-2016 RD1_RS05660 d95df7f510d9d2507c45540634db6f5e 212 Gene3D G3DSA:3.40.50.1110 22 205 8.4E-45 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RD1_RS05660 d95df7f510d9d2507c45540634db6f5e 212 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 25 190 1.9E-22 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 426 446 2.2E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 409 426 2.2E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 Pfam PF00072 Response regulator receiver domain 5 113 2.5E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 SUPERFAMILY SSF46689 366 446 5.38E-17 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 Pfam PF02954 Bacterial regulatory protein, Fis family 403 440 7.6E-15 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 Gene3D G3DSA:1.10.10.60 376 446 2.7E-21 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 SMART SM00448 3 114 7.6E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 Pfam PF14532 Sigma-54 interaction domain 141 283 5.3E-28 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 PANTHER PTHR32071 5 454 5.0E-113 T 23-04-2016 RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 Gene3D G3DSA:3.40.50.2300 4 129 6.0E-33 T 23-04-2016 RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 Gene3D G3DSA:3.40.50.300 139 284 8.7E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 SUPERFAMILY SSF52172 4 185 8.68E-40 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 SMART SM00382 160 275 3.7E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 SUPERFAMILY SSF52540 140 355 2.84E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 Gene3D G3DSA:1.10.8.60 285 360 1.7E-21 T 23-04-2016 RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 324 333 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RD1_RS12680 017ffeead8dba5876c5fe5b4eb04deab 454 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 164 177 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RD1_RS08970 d791ddf2b6cc6091b1fbdb2e874b9b26 367 Pfam PF02649 Type I GTP cyclohydrolase folE2 76 341 4.5E-71 T 23-04-2016 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RD1_RS08970 d791ddf2b6cc6091b1fbdb2e874b9b26 367 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 76 347 30.895 T 23-04-2016 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RD1_RS08970 d791ddf2b6cc6091b1fbdb2e874b9b26 367 Gene3D G3DSA:3.10.270.10 75 344 1.4E-88 T 23-04-2016 RD1_RS08970 d791ddf2b6cc6091b1fbdb2e874b9b26 367 PANTHER PTHR36445:SF1 71 358 4.5E-55 T 23-04-2016 RD1_RS08970 d791ddf2b6cc6091b1fbdb2e874b9b26 367 PANTHER PTHR36445 71 358 4.5E-55 T 23-04-2016 RD1_RS02440 1bb4891d4c33ae1399ae7cee2172bcd1 327 PANTHER PTHR33608 27 322 2.1E-74 T 23-04-2016 RD1_RS02440 1bb4891d4c33ae1399ae7cee2172bcd1 327 PANTHER PTHR33608:SF6 27 322 2.1E-74 T 23-04-2016 RD1_RS02440 1bb4891d4c33ae1399ae7cee2172bcd1 327 Pfam PF01882 Protein of unknown function DUF58 68 152 7.6E-24 T 23-04-2016 IPR002881 Domain of unknown function DUF58 RD1_RS02440 1bb4891d4c33ae1399ae7cee2172bcd1 327 SUPERFAMILY SSF53300 104 224 3.89E-7 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS17935 785a232ce9a37f0a2210e416a9d5ed28 496 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 5 476 19.64 T 23-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 RD1_RS17935 785a232ce9a37f0a2210e416a9d5ed28 496 PANTHER PTHR23088:SF29 191 484 2.4E-50 T 23-04-2016 RD1_RS17935 785a232ce9a37f0a2210e416a9d5ed28 496 PANTHER PTHR23088 191 484 2.4E-50 T 23-04-2016 RD1_RS17935 785a232ce9a37f0a2210e416a9d5ed28 496 Pfam PF00795 Carbon-nitrogen hydrolase 239 457 7.1E-21 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS17935 785a232ce9a37f0a2210e416a9d5ed28 496 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 59 439 5.0E-80 T 23-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 RD1_RS17935 785a232ce9a37f0a2210e416a9d5ed28 496 SUPERFAMILY SSF56317 212 470 7.46E-39 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS17935 785a232ce9a37f0a2210e416a9d5ed28 496 Gene3D G3DSA:3.60.110.10 245 463 8.3E-25 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS17030 138564e163ac80314bc0f975cd9c2359 164 Gene3D G3DSA:3.10.450.50 20 149 8.7E-13 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS17030 138564e163ac80314bc0f975cd9c2359 164 SUPERFAMILY SSF54427 18 157 1.94E-16 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS17030 138564e163ac80314bc0f975cd9c2359 164 Pfam PF13577 SnoaL-like domain 18 140 2.4E-7 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RD1_RS12130 90c219297fbfde3f643e7817c488cf6b 237 Pfam PF07310 PAS domain 26 157 2.1E-36 T 23-04-2016 IPR009922 Protein of unknown function DUF1457 RD1_RS11485 b6cadb5119fb6d65fda4a41a2117ad28 189 Gene3D G3DSA:1.10.357.10 10 181 4.5E-24 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RD1_RS11485 b6cadb5119fb6d65fda4a41a2117ad28 189 SUPERFAMILY SSF48498 80 185 7.91E-13 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RD1_RS11485 b6cadb5119fb6d65fda4a41a2117ad28 189 SUPERFAMILY SSF46689 10 75 7.77E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS11485 b6cadb5119fb6d65fda4a41a2117ad28 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 59 1.6E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS11485 b6cadb5119fb6d65fda4a41a2117ad28 189 PANTHER PTHR30055 1 181 3.2E-17 T 23-04-2016 RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 332 353 0.3 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 217 238 0.0017 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 240 261 0.0012 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 355 376 1.5E-6 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 378 399 7.2 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 79 100 0.025 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 424 445 5.8E-5 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 401 422 0.37 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 102 123 0.23 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 309 330 3.4E-4 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 148 169 0.003 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 286 307 0.5 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 125 146 0.4 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 171 192 0.27 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 263 284 0.063 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 194 215 0.13 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 56 77 0.074 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SMART SM00698 33 54 0.0052 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SUPERFAMILY SSF82185 121 240 1.57E-33 T 23-04-2016 RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Gene3D G3DSA:2.20.110.10 26 115 1.2E-22 T 23-04-2016 RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Gene3D G3DSA:2.20.110.10 294 400 1.7E-32 T 23-04-2016 RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Gene3D G3DSA:2.20.110.10 175 293 1.1E-35 T 23-04-2016 RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SUPERFAMILY SSF82185 29 134 2.62E-28 T 23-04-2016 RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 357 379 7.2E-9 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 426 446 4.7E-4 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 242 262 3.1E-4 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 265 287 3.7E-4 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 311 331 3.0E-5 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 196 218 4.9E-4 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 35 55 2.0E-4 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 127 147 0.0038 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 334 354 0.0014 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 81 103 1.5E-4 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 288 310 0.0072 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 219 241 3.8E-4 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 380 400 0.33 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 58 80 4.9E-4 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 403 425 4.8E-4 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 150 171 3.7E-6 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 173 193 2.9E-4 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 Pfam PF02493 MORN repeat 104 125 8.3E-4 T 23-04-2016 IPR003409 MORN motif RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 PANTHER PTHR23084 58 258 1.1E-86 T 23-04-2016 RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 PANTHER PTHR23084 332 412 1.1E-86 T 23-04-2016 RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SUPERFAMILY SSF82185 260 380 6.98E-36 T 23-04-2016 RD1_RS05600 607390fe6d460280217142ee18e2e81f 462 SUPERFAMILY SSF82185 353 456 4.32E-27 T 23-04-2016 RD1_RS16465 d6f8360234c10b3d025878d74723b84e 204 Gene3D G3DSA:3.40.50.2300 1 125 7.2E-28 T 23-04-2016 RD1_RS16465 d6f8360234c10b3d025878d74723b84e 204 Pfam PF00072 Response regulator receiver domain 3 115 1.7E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS16465 d6f8360234c10b3d025878d74723b84e 204 SMART SM00448 1 114 3.1E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS16465 d6f8360234c10b3d025878d74723b84e 204 PANTHER PTHR26402:SF511 1 199 4.5E-44 T 23-04-2016 RD1_RS16465 d6f8360234c10b3d025878d74723b84e 204 PANTHER PTHR26402 1 199 4.5E-44 T 23-04-2016 RD1_RS16465 d6f8360234c10b3d025878d74723b84e 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 144 158 4.0E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS16465 d6f8360234c10b3d025878d74723b84e 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 174 4.0E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS16465 d6f8360234c10b3d025878d74723b84e 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 186 4.0E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS16465 d6f8360234c10b3d025878d74723b84e 204 Gene3D G3DSA:1.10.10.10 139 202 5.2E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS16465 d6f8360234c10b3d025878d74723b84e 204 SMART SM00421 141 198 7.8E-17 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS16465 d6f8360234c10b3d025878d74723b84e 204 Pfam PF00196 Bacterial regulatory proteins, luxR family 143 198 2.8E-18 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS16465 d6f8360234c10b3d025878d74723b84e 204 SUPERFAMILY SSF46894 139 203 8.5E-18 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RD1_RS16465 d6f8360234c10b3d025878d74723b84e 204 SUPERFAMILY SSF52172 1 126 6.97E-26 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 Gene3D G3DSA:3.40.192.10 69 189 1.6E-59 T 23-04-2016 RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 PANTHER PTHR11606 4 446 1.3E-195 T 23-04-2016 RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 203 446 2.0E-64 T 23-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 Gene3D G3DSA:3.40.50.720 203 446 1.7E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 194 216 5.86E-28 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 373 384 5.86E-28 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 236 256 5.86E-28 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 115 129 5.86E-28 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 SUPERFAMILY SSF53223 8 197 4.8E-68 T 23-04-2016 RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 SUPERFAMILY SSF51735 203 446 3.2E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 SMART SM00839 205 446 1.4E-55 T 23-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 58 186 1.1E-50 T 23-04-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 PIRSF PIRSF000185 21 449 6.8E-113 T 23-04-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 Gene3D G3DSA:1.10.285.10 10 68 5.6E-17 T 23-04-2016 RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 123 136 - T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 RD1_RS11270 f653effaed63593a6ecbf32fb1f1f437 449 PANTHER PTHR11606:SF4 4 446 1.3E-195 T 23-04-2016 RD1_RS02160 aa17e5ce7780f69b29025764b3a08808 113 Pfam PF11015 Protein of unknown function (DUF2853) 10 109 2.0E-45 T 23-04-2016 IPR021274 Protein of unknown function DUF2853 RD1_RS02160 aa17e5ce7780f69b29025764b3a08808 113 SUPERFAMILY SSF158587 1 112 3.79E-49 T 23-04-2016 IPR023154 Jann4075-like domain RD1_RS02160 aa17e5ce7780f69b29025764b3a08808 113 Gene3D G3DSA:1.10.238.120 1 112 2.9E-55 T 23-04-2016 IPR023154 Jann4075-like domain RD1_RS10950 277f725b16801999fcecf8f5b90e1a7f 419 Pfam PF01636 Phosphotransferase enzyme family 37 289 1.9E-21 T 23-04-2016 IPR002575 Aminoglycoside phosphotransferase RD1_RS10950 277f725b16801999fcecf8f5b90e1a7f 419 PANTHER PTHR34273:SF2 4 415 3.1E-122 T 23-04-2016 RD1_RS10950 277f725b16801999fcecf8f5b90e1a7f 419 SUPERFAMILY SSF56112 6 406 8.42E-74 T 23-04-2016 IPR011009 Protein kinase-like domain RD1_RS10950 277f725b16801999fcecf8f5b90e1a7f 419 PIRSF PIRSF031134 2 415 1.5E-129 T 23-04-2016 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|KEGG: 00500+2.7.1.10|MetaCyc: PWY-6754|UniPathway: UPA00904 RD1_RS10950 277f725b16801999fcecf8f5b90e1a7f 419 TIGRFAM TIGR01767 MTRK: S-methyl-5-thioribose kinase 39 411 2.4E-131 T 23-04-2016 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|KEGG: 00500+2.7.1.10|MetaCyc: PWY-6754|UniPathway: UPA00904 RD1_RS10950 277f725b16801999fcecf8f5b90e1a7f 419 Hamap MF_01683 Methylthioribose kinase [mtnK]. 1 419 174.71 T 23-04-2016 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|KEGG: 00500+2.7.1.10|MetaCyc: PWY-6754|UniPathway: UPA00904 RD1_RS10950 277f725b16801999fcecf8f5b90e1a7f 419 PANTHER PTHR34273 4 415 3.1E-122 T 23-04-2016 RD1_RS10950 277f725b16801999fcecf8f5b90e1a7f 419 Gene3D G3DSA:3.90.1200.10 96 284 2.5E-12 T 23-04-2016 RD1_RS09485 12fc815e7053db78aa68594210c5a4d9 227 SMART SM00382 35 223 8.9E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS09485 12fc815e7053db78aa68594210c5a4d9 227 SUPERFAMILY SSF52540 5 225 2.79E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09485 12fc815e7053db78aa68594210c5a4d9 227 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS09485 12fc815e7053db78aa68594210c5a4d9 227 PANTHER PTHR24220 7 226 1.3E-89 T 23-04-2016 RD1_RS09485 12fc815e7053db78aa68594210c5a4d9 227 Pfam PF00005 ABC transporter 26 174 9.0E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS09485 12fc815e7053db78aa68594210c5a4d9 227 Gene3D G3DSA:3.40.50.300 3 224 2.2E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09485 12fc815e7053db78aa68594210c5a4d9 227 PANTHER PTHR24220:SF111 7 226 1.3E-89 T 23-04-2016 RD1_RS17525 a07c2b7b48d7df645bb3b8f5ea77f37c 379 SUPERFAMILY SSF55124 5 90 9.65E-20 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS17525 a07c2b7b48d7df645bb3b8f5ea77f37c 379 SUPERFAMILY SSF56014 289 375 3.27E-15 T 23-04-2016 RD1_RS17525 a07c2b7b48d7df645bb3b8f5ea77f37c 379 Gene3D G3DSA:3.90.480.10 281 337 1.4E-12 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS17525 a07c2b7b48d7df645bb3b8f5ea77f37c 379 Gene3D G3DSA:3.90.480.10 23 89 1.4E-12 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS17525 a07c2b7b48d7df645bb3b8f5ea77f37c 379 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 328 344 - T 23-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS17525 a07c2b7b48d7df645bb3b8f5ea77f37c 379 PANTHER PTHR32439 7 374 1.4E-57 T 23-04-2016 RD1_RS17525 a07c2b7b48d7df645bb3b8f5ea77f37c 379 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 17 81 8.1E-14 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RD1_RS17525 a07c2b7b48d7df645bb3b8f5ea77f37c 379 PANTHER PTHR32439:SF3 7 374 1.4E-57 T 23-04-2016 RD1_RS09905 413a92d79271558bdac0969144a081ef 273 Pfam PF13483 Beta-lactamase superfamily domain 55 221 5.1E-44 T 23-04-2016 RD1_RS09905 413a92d79271558bdac0969144a081ef 273 SUPERFAMILY SSF56281 54 239 2.23E-14 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS09905 413a92d79271558bdac0969144a081ef 273 Gene3D G3DSA:3.60.15.10 48 237 1.1E-31 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS09905 413a92d79271558bdac0969144a081ef 273 PANTHER PTHR39189 16 268 2.7E-36 T 23-04-2016 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 Gene3D G3DSA:3.30.300.20 285 353 2.7E-29 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 Gene3D G3DSA:2.40.50.140 136 205 2.8E-27 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 Gene3D G3DSA:1.10.150.20 438 512 2.2E-13 T 23-04-2016 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 Gene3D G3DSA:1.10.150.20 363 426 2.2E-21 T 23-04-2016 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 372 420 1.6E-20 T 23-04-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 8 417 29.391 T 23-04-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 Pfam PF08529 NusA N-terminal domain 10 132 8.6E-31 T 23-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 Pfam PF14520 Helix-hairpin-helix domain 377 419 0.0016 T 23-04-2016 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 SUPERFAMILY SSF47794 363 422 5.49E-16 T 23-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 SUPERFAMILY SSF50249 139 206 1.61E-16 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 SMART SM00316 141 207 6.7E-6 T 23-04-2016 IPR022967 RNA-binding domain, S1 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 SMART SM00322 237 310 3.8 T 23-04-2016 IPR004087 K Homology domain GO:0003676 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 SMART SM00322 311 422 0.77 T 23-04-2016 IPR004087 K Homology domain GO:0003676 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 SUPERFAMILY SSF54814 287 349 5.23E-15 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 10 350 6.2E-125 T 23-04-2016 IPR010213 Transcription termination factor NusA GO:0003723 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 PANTHER PTHR22648:SF0 7 455 1.7E-163 T 23-04-2016 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 SUPERFAMILY SSF54814 207 285 7.85E-32 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 SUPERFAMILY SSF69705 9 133 4.05E-36 T 23-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 Pfam PF13184 NusA-like KH domain 237 303 3.0E-26 T 23-04-2016 IPR025249 KH domain, NusA-like GO:0003723 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 PANTHER PTHR22648 7 455 1.7E-163 T 23-04-2016 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 Gene3D G3DSA:3.30.1480.10 8 133 6.8E-50 T 23-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RD1_RS01810 ec06e17708b21ede85183c6d501129d6 538 Gene3D G3DSA:3.30.300.20 206 284 6.6E-37 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RD1_RS12215 f08d42d60ecef96f522049d1af914358 195 Pfam PF07691 PA14 domain 91 171 2.1E-6 T 23-04-2016 IPR011658 PA14 domain RD1_RS12215 f08d42d60ecef96f522049d1af914358 195 Gene3D G3DSA:3.90.182.10 89 194 9.0E-9 T 23-04-2016 IPR011658 PA14 domain RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 SUPERFAMILY SSF52777 268 497 1.82E-90 T 23-04-2016 RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 Gene3D G3DSA:2.40.50.100 1 96 1.3E-30 T 23-04-2016 RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 Gene3D G3DSA:2.40.50.100 98 192 8.7E-30 T 23-04-2016 RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 Pfam PF02817 e3 binding domain 207 237 5.6E-10 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 SUPERFAMILY SSF47005 197 241 3.27E-9 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 268 496 9.8E-81 T 23-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 Pfam PF00364 Biotin-requiring enzyme 101 173 1.4E-22 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 Pfam PF00364 Biotin-requiring enzyme 4 76 4.9E-22 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 PANTHER PTHR23151:SF47 200 498 4.3E-210 T 23-04-2016 RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 PANTHER PTHR23151:SF47 3 119 4.3E-210 T 23-04-2016 RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 100 497 1.5E-168 T 23-04-2016 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|UniPathway: UPA00868 RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 SUPERFAMILY SSF51230 1 95 1.31E-28 T 23-04-2016 IPR011053 Single hybrid motif RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 PANTHER PTHR23151 200 498 4.3E-210 T 23-04-2016 RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 PANTHER PTHR23151 3 119 4.3E-210 T 23-04-2016 RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 Gene3D G3DSA:3.30.559.10 259 496 5.3E-93 T 23-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 SUPERFAMILY SSF51230 99 193 5.23E-28 T 23-04-2016 IPR011053 Single hybrid motif RD1_RS07420 4b7c7e910e681028a30813988954cea8 498 Gene3D G3DSA:4.10.320.10 206 250 1.1E-13 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RD1_RS15055 711ec611e2058eba368678087da3de07 671 SUPERFAMILY SSF54292 6 71 2.71E-17 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS15055 711ec611e2058eba368678087da3de07 671 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 95 134 5.4E-18 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RD1_RS15055 711ec611e2058eba368678087da3de07 671 Pfam PF00384 Molybdopterin oxidoreductase 283 427 8.7E-28 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RD1_RS15055 711ec611e2058eba368678087da3de07 671 Pfam PF00384 Molybdopterin oxidoreductase 435 584 5.7E-22 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RD1_RS15055 711ec611e2058eba368678087da3de07 671 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 34 51 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RD1_RS15055 711ec611e2058eba368678087da3de07 671 Gene3D G3DSA:3.40.50.740 283 413 9.6E-34 T 23-04-2016 RD1_RS15055 711ec611e2058eba368678087da3de07 671 Gene3D G3DSA:3.40.50.740 468 469 9.6E-34 T 23-04-2016 RD1_RS15055 711ec611e2058eba368678087da3de07 671 Gene3D G3DSA:3.40.50.740 502 613 9.6E-34 T 23-04-2016 RD1_RS15055 711ec611e2058eba368678087da3de07 671 PANTHER PTHR11615 350 667 3.3E-265 T 23-04-2016 RD1_RS15055 711ec611e2058eba368678087da3de07 671 PANTHER PTHR11615 6 327 3.3E-265 T 23-04-2016 RD1_RS15055 711ec611e2058eba368678087da3de07 671 SUPERFAMILY SSF53706 225 616 4.95E-84 T 23-04-2016 RD1_RS15055 711ec611e2058eba368678087da3de07 671 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 157 167 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RD1_RS15055 711ec611e2058eba368678087da3de07 671 Gene3D G3DSA:3.10.20.30 10 61 4.1E-7 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS15055 711ec611e2058eba368678087da3de07 671 SUPERFAMILY SSF54862 87 223 5.02E-36 T 23-04-2016 RD1_RS15055 711ec611e2058eba368678087da3de07 671 Pfam PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal 621 655 3.2E-10 T 23-04-2016 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal GO:0016651|GO:0051536|GO:0055114 RD1_RS15055 711ec611e2058eba368678087da3de07 671 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 110 122 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RD1_RS15055 711ec611e2058eba368678087da3de07 671 SMART SM00929 95 135 1.5E-22 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RD1_RS15055 711ec611e2058eba368678087da3de07 671 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 66 2.6E-10 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS15055 711ec611e2058eba368678087da3de07 671 PANTHER PTHR11615:SF115 350 667 3.3E-265 T 23-04-2016 RD1_RS15055 711ec611e2058eba368678087da3de07 671 PANTHER PTHR11615:SF115 6 327 3.3E-265 T 23-04-2016 RD1_RS15055 711ec611e2058eba368678087da3de07 671 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 7 582 7.5E-189 T 23-04-2016 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 RD1_RS15985 401d657339be8232958a280f38e89281 331 Gene3D G3DSA:3.40.630.10 44 236 8.8E-32 T 23-04-2016 RD1_RS15985 401d657339be8232958a280f38e89281 331 SUPERFAMILY SSF53187 17 328 1.72E-51 T 23-04-2016 RD1_RS15985 401d657339be8232958a280f38e89281 331 PANTHER PTHR37326 1 331 9.8E-42 T 23-04-2016 RD1_RS15985 401d657339be8232958a280f38e89281 331 PIRSF PIRSF039012 1 331 6.3E-79 T 23-04-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 RD1_RS15985 401d657339be8232958a280f38e89281 331 PANTHER PTHR37326:SF1 1 331 9.8E-42 T 23-04-2016 RD1_RS15985 401d657339be8232958a280f38e89281 331 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 47 326 2.9E-66 T 23-04-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 RD1_RS15985 401d657339be8232958a280f38e89281 331 TIGRFAM TIGR02994 ectoine_eutE: ectoine utilization protein EutE 6 326 3.0E-148 T 23-04-2016 IPR014336 N-alpha-acetyl diaminobutyrate deacetylase DoeB KEGG: 00240+3.5.1.-|KEGG: 00260+3.5.1.-|KEGG: 00332+3.5.1.-|KEGG: 00364+3.5.1.-|KEGG: 00480+3.5.1.-|KEGG: 00520+3.5.1.-|KEGG: 00600+3.5.1.-|KEGG: 00760+3.5.1.-|KEGG: 00930+3.5.1.- RD1_RS04940 3e7439525e76d529e9ed9b8583d3a984 135 Pfam PF12680 SnoaL-like domain 5 115 4.4E-16 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RD1_RS04940 3e7439525e76d529e9ed9b8583d3a984 135 Gene3D G3DSA:3.10.450.50 3 132 7.3E-28 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS04940 3e7439525e76d529e9ed9b8583d3a984 135 SUPERFAMILY SSF54427 3 129 4.9E-24 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS04940 3e7439525e76d529e9ed9b8583d3a984 135 TIGRFAM TIGR02096 TIGR02096: conserved hypothetical protein 5 130 4.7E-30 T 23-04-2016 IPR011721 Conserved hypothetical protein CHP02096 RD1_RS09875 c4f0ee38f94f3bd767c120434ec73264 194 PIRSF PIRSF005413 4 191 4.4E-68 T 23-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RD1_RS09875 c4f0ee38f94f3bd767c120434ec73264 194 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 27 172 1.0E-55 T 23-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RD1_RS09875 c4f0ee38f94f3bd767c120434ec73264 194 Gene3D G3DSA:2.60.370.10 54 186 8.0E-57 T 23-04-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain RD1_RS09875 c4f0ee38f94f3bd767c120434ec73264 194 SUPERFAMILY SSF110111 54 174 2.35E-52 T 23-04-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain RD1_RS09875 c4f0ee38f94f3bd767c120434ec73264 194 PANTHER PTHR21320:SF3 13 192 3.3E-64 T 23-04-2016 RD1_RS09875 c4f0ee38f94f3bd767c120434ec73264 194 Hamap MF_00155 Cytochrome c oxidase assembly protein CtaG [ctaG]. 1 178 42.542 T 23-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RD1_RS09875 c4f0ee38f94f3bd767c120434ec73264 194 PANTHER PTHR21320 13 192 3.3E-64 T 23-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RD1_RS17080 d1608bc4b31b4a3a63fd8f8b874c9c22 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 1 19 - T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS17080 d1608bc4b31b4a3a63fd8f8b874c9c22 334 SMART SM00354 1 68 4.0E-22 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS17080 d1608bc4b31b4a3a63fd8f8b874c9c22 334 Gene3D G3DSA:3.40.50.2300 167 332 4.7E-41 T 23-04-2016 RD1_RS17080 d1608bc4b31b4a3a63fd8f8b874c9c22 334 PANTHER PTHR30146:SF2 1 302 5.8E-93 T 23-04-2016 RD1_RS17080 d1608bc4b31b4a3a63fd8f8b874c9c22 334 Gene3D G3DSA:1.10.260.40 1 56 1.8E-21 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS17080 d1608bc4b31b4a3a63fd8f8b874c9c22 334 SUPERFAMILY SSF53822 55 307 2.94E-54 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS17080 d1608bc4b31b4a3a63fd8f8b874c9c22 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 45 7.0E-17 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS17080 d1608bc4b31b4a3a63fd8f8b874c9c22 334 PANTHER PTHR30146 1 302 5.8E-93 T 23-04-2016 RD1_RS17080 d1608bc4b31b4a3a63fd8f8b874c9c22 334 SUPERFAMILY SSF47413 1 56 2.74E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS17080 d1608bc4b31b4a3a63fd8f8b874c9c22 334 Pfam PF13377 Periplasmic binding protein-like domain 168 331 1.8E-27 T 23-04-2016 RD1_RS17080 d1608bc4b31b4a3a63fd8f8b874c9c22 334 Gene3D G3DSA:3.40.50.2300 57 166 1.0E-33 T 23-04-2016 RD1_RS05870 0fdff48d6e64ce94946e089d2cabbf6d 61 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 2 50 3.2E-19 T 23-04-2016 IPR008621 Cbb3-type cytochrome oxidase component RD1_RS15040 d6a50412056d5f97accddbdeac8a6aeb 164 SUPERFAMILY SSF54862 38 148 1.67E-28 T 23-04-2016 RD1_RS15040 d6a50412056d5f97accddbdeac8a6aeb 164 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 21 142 1.2E-51 T 23-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 RD1_RS15040 d6a50412056d5f97accddbdeac8a6aeb 164 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 12 161 28.068 T 23-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 RD1_RS15040 d6a50412056d5f97accddbdeac8a6aeb 164 Pfam PF12838 4Fe-4S dicluster domain 64 118 3.0E-13 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS15040 d6a50412056d5f97accddbdeac8a6aeb 164 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 65 76 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS15040 d6a50412056d5f97accddbdeac8a6aeb 164 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 104 115 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS15040 d6a50412056d5f97accddbdeac8a6aeb 164 PANTHER PTHR10849 8 164 3.2E-107 T 23-04-2016 RD1_RS15040 d6a50412056d5f97accddbdeac8a6aeb 164 Gene3D G3DSA:1.10.1060.10 25 139 1.3E-23 T 23-04-2016 RD1_RS15040 d6a50412056d5f97accddbdeac8a6aeb 164 PANTHER PTHR10849:SF20 8 164 3.2E-107 T 23-04-2016 RD1_RS16435 9b15229870c02d789fd636977cace3ea 259 Gene3D G3DSA:3.30.750.70 77 164 3.4E-14 T 23-04-2016 RD1_RS16435 9b15229870c02d789fd636977cace3ea 259 PANTHER PTHR30363 4 259 6.8E-69 T 23-04-2016 RD1_RS16435 9b15229870c02d789fd636977cace3ea 259 SUPERFAMILY SSF100950 76 235 2.72E-23 T 23-04-2016 RD1_RS16435 9b15229870c02d789fd636977cace3ea 259 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 26 40 4.8E-6 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RD1_RS16435 9b15229870c02d789fd636977cace3ea 259 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 40 58 4.8E-6 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RD1_RS16435 9b15229870c02d789fd636977cace3ea 259 PANTHER PTHR30363:SF1 4 259 6.8E-69 T 23-04-2016 RD1_RS16435 9b15229870c02d789fd636977cace3ea 259 Pfam PF08220 DeoR-like helix-turn-helix domain 8 60 8.4E-13 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RD1_RS16435 9b15229870c02d789fd636977cace3ea 259 SMART SM00420 8 60 3.1E-10 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RD1_RS16435 9b15229870c02d789fd636977cace3ea 259 Pfam PF00455 DeoR C terminal sensor domain 77 234 2.5E-38 T 23-04-2016 IPR014036 DeoR C-terminal sensor domain RD1_RS16435 9b15229870c02d789fd636977cace3ea 259 SUPERFAMILY SSF46785 5 57 2.73E-7 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS16435 9b15229870c02d789fd636977cace3ea 259 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 23-04-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RD1_RS16435 9b15229870c02d789fd636977cace3ea 259 SMART SM01134 74 235 7.7E-51 T 23-04-2016 RD1_RS16435 9b15229870c02d789fd636977cace3ea 259 Gene3D G3DSA:1.10.10.10 4 47 1.9E-7 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11845 b53f288967477ecc4655d2eeff5b0a5d 112 SUPERFAMILY SSF54913 1 112 5.4E-46 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta RD1_RS11845 b53f288967477ecc4655d2eeff5b0a5d 112 SMART SM00938 4 105 1.8E-65 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RD1_RS11845 b53f288967477ecc4655d2eeff5b0a5d 112 Gene3D G3DSA:3.30.70.120 1 112 2.0E-51 T 23-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RD1_RS11845 b53f288967477ecc4655d2eeff5b0a5d 112 PRINTS PR00340 P-II protein signature 83 103 8.8E-44 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RD1_RS11845 b53f288967477ecc4655d2eeff5b0a5d 112 PRINTS PR00340 P-II protein signature 2 17 8.8E-44 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RD1_RS11845 b53f288967477ecc4655d2eeff5b0a5d 112 PRINTS PR00340 P-II protein signature 23 41 8.8E-44 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RD1_RS11845 b53f288967477ecc4655d2eeff5b0a5d 112 PRINTS PR00340 P-II protein signature 52 75 8.8E-44 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RD1_RS11845 b53f288967477ecc4655d2eeff5b0a5d 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 4.9E-43 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RD1_RS11845 b53f288967477ecc4655d2eeff5b0a5d 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 23-04-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 RD1_RS11845 b53f288967477ecc4655d2eeff5b0a5d 112 PIRSF PIRSF039144 1 112 6.4E-54 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RD1_RS11845 b53f288967477ecc4655d2eeff5b0a5d 112 PANTHER PTHR30115 1 112 1.1E-62 T 23-04-2016 RD1_RS11845 b53f288967477ecc4655d2eeff5b0a5d 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 23-04-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 RD1_RS12665 6d01e4da67298d857d330cc33cc98bc6 345 Gene3D G3DSA:3.10.450.50 34 163 1.9E-14 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS12665 6d01e4da67298d857d330cc33cc98bc6 345 Gene3D G3DSA:3.10.450.50 224 336 8.4E-12 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS12665 6d01e4da67298d857d330cc33cc98bc6 345 SUPERFAMILY SSF54427 224 338 6.2E-18 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS12665 6d01e4da67298d857d330cc33cc98bc6 345 Pfam PF12680 SnoaL-like domain 21 141 2.3E-7 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RD1_RS12665 6d01e4da67298d857d330cc33cc98bc6 345 SUPERFAMILY SSF54427 17 162 1.45E-22 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS02000 6e236f00f0379e02b05cdc6587611efa 298 SMART SM00470 38 128 2.3E-34 T 23-04-2016 IPR003115 ParB/Sulfiredoxin RD1_RS02000 6e236f00f0379e02b05cdc6587611efa 298 Pfam PF02195 ParB-like nuclease domain 39 128 1.6E-27 T 23-04-2016 IPR003115 ParB/Sulfiredoxin RD1_RS02000 6e236f00f0379e02b05cdc6587611efa 298 SUPERFAMILY SSF109709 120 226 1.39E-34 T 23-04-2016 RD1_RS02000 6e236f00f0379e02b05cdc6587611efa 298 SUPERFAMILY SSF110849 39 130 1.54E-27 T 23-04-2016 IPR003115 ParB/Sulfiredoxin RD1_RS02000 6e236f00f0379e02b05cdc6587611efa 298 Gene3D G3DSA:3.90.1530.10 35 134 8.2E-40 T 23-04-2016 RD1_RS02000 6e236f00f0379e02b05cdc6587611efa 298 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 37 208 2.3E-58 T 23-04-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 RD1_RS02000 6e236f00f0379e02b05cdc6587611efa 298 PANTHER PTHR33375 1 295 1.4E-87 T 23-04-2016 RD1_RS05585 15cb818e5f2452c603823d5ba3d8b6d7 522 SUPERFAMILY SSF110921 395 502 5.36E-26 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RD1_RS05585 15cb818e5f2452c603823d5ba3d8b6d7 522 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 7 512 40.178 T 23-04-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RD1_RS05585 15cb818e5f2452c603823d5ba3d8b6d7 522 SUPERFAMILY SSF51569 4 295 3.3E-97 T 23-04-2016 RD1_RS05585 15cb818e5f2452c603823d5ba3d8b6d7 522 PANTHER PTHR10277 7 511 2.4E-246 T 23-04-2016 RD1_RS05585 15cb818e5f2452c603823d5ba3d8b6d7 522 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 17 33 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RD1_RS05585 15cb818e5f2452c603823d5ba3d8b6d7 522 Gene3D G3DSA:3.20.20.70 3 351 9.0E-140 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS05585 15cb818e5f2452c603823d5ba3d8b6d7 522 Pfam PF00682 HMGL-like 10 276 1.9E-91 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 RD1_RS05585 15cb818e5f2452c603823d5ba3d8b6d7 522 PANTHER PTHR10277:SF9 7 511 2.4E-246 T 23-04-2016 RD1_RS05585 15cb818e5f2452c603823d5ba3d8b6d7 522 Pfam PF08502 LeuA allosteric (dimerisation) domain 373 503 4.9E-38 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RD1_RS05585 15cb818e5f2452c603823d5ba3d8b6d7 522 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 10 500 3.5E-200 T 23-04-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RD1_RS05585 15cb818e5f2452c603823d5ba3d8b6d7 522 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 203 216 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RD1_RS05585 15cb818e5f2452c603823d5ba3d8b6d7 522 SMART SM00917 373 503 2.7E-41 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RD1_RS15090 fa6e2aff4bfa4abe477c058a05aceedc 359 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 26 169 8.1E-52 T 23-04-2016 RD1_RS15090 fa6e2aff4bfa4abe477c058a05aceedc 359 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 127 145 - T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RD1_RS15090 fa6e2aff4bfa4abe477c058a05aceedc 359 SUPERFAMILY SSF52833 15 189 8.61E-52 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS15090 fa6e2aff4bfa4abe477c058a05aceedc 359 PANTHER PTHR10371 8 208 9.4E-85 T 23-04-2016 RD1_RS15090 fa6e2aff4bfa4abe477c058a05aceedc 359 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 23 169 3.4E-50 T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RD1_RS15090 fa6e2aff4bfa4abe477c058a05aceedc 359 Gene3D G3DSA:3.40.30.10 92 174 6.8E-12 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 TIGRFAM TIGR02645 ARCH_P_rylase: putative thymidine phosphorylase 190 676 1.0E-150 T 23-04-2016 IPR013466 Thymidine phosphorylase/AMP phosphorylase GO:0016763 RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 609 672 2.7E-8 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 SUPERFAMILY SSF54680 595 665 2.88E-12 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 SUPERFAMILY SSF52418 339 592 1.7E-62 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 SUPERFAMILY SSF47648 274 337 8.77E-11 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 Gene3D G3DSA:3.40.50.300 2 25 1.7E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 Gene3D G3DSA:3.40.50.300 75 177 1.7E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 Pfam PF02885 Glycosyl transferase family, helical bundle domain 277 332 1.1E-9 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 Gene3D G3DSA:1.20.970.10 275 332 1.1E-9 T 23-04-2016 RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 Pfam PF00625 Guanylate kinase 6 178 2.6E-11 T 23-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 PANTHER PTHR10515:SF0 249 670 1.5E-103 T 23-04-2016 RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 Gene3D G3DSA:3.40.1030.10 341 592 3.7E-65 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 SUPERFAMILY SSF52540 3 180 1.6E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 Hamap MF_00836 Ribose 1,5-bisphosphate phosphokinase PhnN [phnN]. 2 179 32.469 T 23-04-2016 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532|UniPathway: UPA00087 RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 SMART SM00072 2 182 8.7E-8 T 23-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 Pfam PF00591 Glycosyl transferase family, a/b domain 346 478 1.9E-11 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 Hamap MF_00703 Putative thymidine phosphorylase. 187 673 58.011 T 23-04-2016 IPR028579 Putative thymidine phosphorylase KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 Gene3D G3DSA:3.90.1170.30 595 671 3.6E-13 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 380 395 - T 23-04-2016 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 PANTHER PTHR10515 249 670 1.5E-103 T 23-04-2016 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 TIGRFAM TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 3 179 8.7E-51 T 23-04-2016 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532|UniPathway: UPA00087 RD1_RS07075 a54dcd5bb0b1f386bd234feaa2f6094c 677 SMART SM00941 608 675 2.4E-15 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RD1_RS04525 d454a7dd81aea04e2f3e143ff6e622ad 463 PANTHER PTHR11986:SF82 15 461 6.5E-132 T 23-04-2016 RD1_RS04525 d454a7dd81aea04e2f3e143ff6e622ad 463 PIRSF PIRSF000521 38 461 2.6E-31 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS04525 d454a7dd81aea04e2f3e143ff6e622ad 463 Pfam PF00202 Aminotransferase class-III 36 457 1.7E-94 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS04525 d454a7dd81aea04e2f3e143ff6e622ad 463 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 259 296 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS04525 d454a7dd81aea04e2f3e143ff6e622ad 463 SUPERFAMILY SSF53383 12 461 3.35E-115 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS04525 d454a7dd81aea04e2f3e143ff6e622ad 463 PANTHER PTHR11986 15 461 6.5E-132 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS04525 d454a7dd81aea04e2f3e143ff6e622ad 463 Gene3D G3DSA:3.90.1150.10 13 72 4.0E-34 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS04525 d454a7dd81aea04e2f3e143ff6e622ad 463 Gene3D G3DSA:3.90.1150.10 352 461 4.0E-34 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS04525 d454a7dd81aea04e2f3e143ff6e622ad 463 Gene3D G3DSA:3.40.640.10 73 350 1.6E-73 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS08815 64a9ffdc2abc1aa74af4d524739a117a 121 Pfam PF03840 Preprotein translocase SecG subunit 4 69 3.0E-16 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RD1_RS08815 64a9ffdc2abc1aa74af4d524739a117a 121 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 9.8E-10 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RD1_RS08815 64a9ffdc2abc1aa74af4d524739a117a 121 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 9.8E-10 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RD1_RS08815 64a9ffdc2abc1aa74af4d524739a117a 121 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 70 1.8E-19 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RD1_RS16625 99a2e31e2ae8ad683c3e791b32d74543 324 Gene3D G3DSA:1.10.10.10 25 58 7.8E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS16625 99a2e31e2ae8ad683c3e791b32d74543 324 PANTHER PTHR34294:SF4 15 321 3.4E-85 T 23-04-2016 RD1_RS16625 99a2e31e2ae8ad683c3e791b32d74543 324 Gene3D G3DSA:3.40.50.1360 59 316 1.4E-74 T 23-04-2016 RD1_RS16625 99a2e31e2ae8ad683c3e791b32d74543 324 Pfam PF04198 Putative sugar-binding domain 63 315 1.2E-65 T 23-04-2016 IPR007324 Sugar-binding domain, putative GO:0030246 RD1_RS16625 99a2e31e2ae8ad683c3e791b32d74543 324 SUPERFAMILY SSF100950 64 316 2.68E-65 T 23-04-2016 RD1_RS16625 99a2e31e2ae8ad683c3e791b32d74543 324 PANTHER PTHR34294 15 321 3.4E-85 T 23-04-2016 RD1_RS16625 99a2e31e2ae8ad683c3e791b32d74543 324 SUPERFAMILY SSF46785 19 58 6.89E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS16625 99a2e31e2ae8ad683c3e791b32d74543 324 Pfam PF13545 Crp-like helix-turn-helix domain 26 58 9.1E-7 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RD1_RS16735 3fa1b4ce73863423d78c1c6030f9647b 285 Gene3D G3DSA:1.10.3720.10 7 272 1.7E-55 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS16735 3fa1b4ce73863423d78c1c6030f9647b 285 SUPERFAMILY SSF161098 9 285 2.71E-61 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS16735 3fa1b4ce73863423d78c1c6030f9647b 285 PANTHER PTHR32243:SF36 14 285 2.4E-77 T 23-04-2016 RD1_RS16735 3fa1b4ce73863423d78c1c6030f9647b 285 PANTHER PTHR32243 14 285 2.4E-77 T 23-04-2016 RD1_RS16735 3fa1b4ce73863423d78c1c6030f9647b 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 274 1.7E-14 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10640 e42ceacb0294b052ebe2533e916bc0e8 246 PANTHER PTHR11751:SF292 132 155 5.1E-16 T 23-04-2016 RD1_RS10640 e42ceacb0294b052ebe2533e916bc0e8 246 PANTHER PTHR11751:SF292 17 90 5.1E-16 T 23-04-2016 RD1_RS10640 e42ceacb0294b052ebe2533e916bc0e8 246 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 61 3.5E-5 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS10640 e42ceacb0294b052ebe2533e916bc0e8 246 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 61 77 3.5E-5 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS10640 e42ceacb0294b052ebe2533e916bc0e8 246 SMART SM00345 28 87 9.9E-15 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS10640 e42ceacb0294b052ebe2533e916bc0e8 246 PANTHER PTHR11751 132 155 5.1E-16 T 23-04-2016 RD1_RS10640 e42ceacb0294b052ebe2533e916bc0e8 246 PANTHER PTHR11751 17 90 5.1E-16 T 23-04-2016 RD1_RS10640 e42ceacb0294b052ebe2533e916bc0e8 246 SMART SM00866 106 240 4.5E-15 T 23-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RD1_RS10640 e42ceacb0294b052ebe2533e916bc0e8 246 SUPERFAMILY SSF46785 18 91 4.68E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS10640 e42ceacb0294b052ebe2533e916bc0e8 246 Pfam PF07702 UTRA domain 111 238 5.0E-16 T 23-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RD1_RS10640 e42ceacb0294b052ebe2533e916bc0e8 246 Gene3D G3DSA:3.40.1410.10 82 244 2.2E-20 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RD1_RS10640 e42ceacb0294b052ebe2533e916bc0e8 246 SUPERFAMILY SSF64288 75 245 3.3E-23 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RD1_RS10640 e42ceacb0294b052ebe2533e916bc0e8 246 Gene3D G3DSA:1.10.10.10 18 81 1.1E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS10640 e42ceacb0294b052ebe2533e916bc0e8 246 Pfam PF00392 Bacterial regulatory proteins, gntR family 26 87 3.1E-14 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS14095 35e2373979a7e6c2c6b1e038cb93b4dc 269 PANTHER PTHR24559:SF185 35 269 3.8E-92 T 23-04-2016 RD1_RS14095 35e2373979a7e6c2c6b1e038cb93b4dc 269 SUPERFAMILY SSF53098 98 259 6.53E-37 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS14095 35e2373979a7e6c2c6b1e038cb93b4dc 269 Pfam PF13683 Integrase core domain 187 252 1.8E-28 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS14095 35e2373979a7e6c2c6b1e038cb93b4dc 269 Gene3D G3DSA:3.30.420.10 100 252 4.7E-39 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS14095 35e2373979a7e6c2c6b1e038cb93b4dc 269 PANTHER PTHR24559 35 269 3.8E-92 T 23-04-2016 RD1_RS14095 35e2373979a7e6c2c6b1e038cb93b4dc 269 Pfam PF13276 HTH-like domain 34 82 9.0E-7 T 23-04-2016 IPR025948 HTH-like domain RD1_RS13615 7bef90244a31e584e46c81adf57c5ec4 114 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 10 111 1.6E-34 T 23-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RD1_RS13615 7bef90244a31e584e46c81adf57c5ec4 114 PANTHER PTHR10072 5 110 1.8E-44 T 23-04-2016 RD1_RS13615 7bef90244a31e584e46c81adf57c5ec4 114 Pfam PF01521 Iron-sulphur cluster biosynthesis 10 109 3.2E-21 T 23-04-2016 IPR000361 FeS cluster biogenesis RD1_RS13615 7bef90244a31e584e46c81adf57c5ec4 114 SUPERFAMILY SSF89360 9 102 6.28E-29 T 23-04-2016 IPR000361 FeS cluster biogenesis RD1_RS13615 7bef90244a31e584e46c81adf57c5ec4 114 Gene3D G3DSA:2.60.300.12 9 102 3.1E-33 T 23-04-2016 IPR000361 FeS cluster biogenesis RD1_RS15255 12f4d37e884cec768b02cf886d1c07bb 149 Pfam PF04191 Phospholipid methyltransferase 38 136 2.5E-11 T 23-04-2016 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|UniPathway: UPA00753 RD1_RS15255 12f4d37e884cec768b02cf886d1c07bb 149 ProDom PD049902 METHYLTRANSFERASE TRANSFERASE PRECURSOR ISOPRENYLCYSTEINE SIGNAL CARBOXYL TRANSMEMBRANE MEMBRANE FAMILY XCC3183 106 149 1.0E-13 T 23-04-2016 RD1_RS15255 12f4d37e884cec768b02cf886d1c07bb 149 PANTHER PTHR12714 9 149 1.5E-18 T 23-04-2016 RD1_RS15255 12f4d37e884cec768b02cf886d1c07bb 149 PANTHER PTHR12714:SF7 9 149 1.5E-18 T 23-04-2016 RD1_RS17795 0cffb230b5fad0c7e61bceaa174affc5 340 SMART SM00354 3 73 7.5E-18 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS17795 0cffb230b5fad0c7e61bceaa174affc5 340 Gene3D G3DSA:3.40.50.2300 183 325 6.1E-24 T 23-04-2016 RD1_RS17795 0cffb230b5fad0c7e61bceaa174affc5 340 SUPERFAMILY SSF47413 2 61 7.04E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS17795 0cffb230b5fad0c7e61bceaa174affc5 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 15 25 6.6E-5 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS17795 0cffb230b5fad0c7e61bceaa174affc5 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 5 15 6.6E-5 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS17795 0cffb230b5fad0c7e61bceaa174affc5 340 PANTHER PTHR30146:SF26 3 339 9.8E-84 T 23-04-2016 RD1_RS17795 0cffb230b5fad0c7e61bceaa174affc5 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 50 1.9E-15 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS17795 0cffb230b5fad0c7e61bceaa174affc5 340 PANTHER PTHR30146 3 339 9.8E-84 T 23-04-2016 RD1_RS17795 0cffb230b5fad0c7e61bceaa174affc5 340 Pfam PF13407 Periplasmic binding protein domain 64 319 3.5E-35 T 23-04-2016 IPR025997 Periplasmic binding protein RD1_RS17795 0cffb230b5fad0c7e61bceaa174affc5 340 SUPERFAMILY SSF53822 61 332 3.64E-33 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS17795 0cffb230b5fad0c7e61bceaa174affc5 340 Gene3D G3DSA:1.10.260.40 2 60 8.1E-21 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS17795 0cffb230b5fad0c7e61bceaa174affc5 340 Gene3D G3DSA:3.40.50.2300 62 182 4.3E-13 T 23-04-2016 RD1_RS09790 aa3cb4166ac02f679cff6a71d0d24cd0 485 SUPERFAMILY SSF52540 106 411 1.37E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09790 aa3cb4166ac02f679cff6a71d0d24cd0 485 Pfam PF00437 Type II/IV secretion system protein 128 404 4.7E-86 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RD1_RS09790 aa3cb4166ac02f679cff6a71d0d24cd0 485 PANTHER PTHR30258 53 475 2.0E-133 T 23-04-2016 RD1_RS09790 aa3cb4166ac02f679cff6a71d0d24cd0 485 PANTHER PTHR30258:SF3 53 475 2.0E-133 T 23-04-2016 RD1_RS09790 aa3cb4166ac02f679cff6a71d0d24cd0 485 Gene3D G3DSA:3.30.450.90 125 222 1.3E-35 T 23-04-2016 RD1_RS09790 aa3cb4166ac02f679cff6a71d0d24cd0 485 Gene3D G3DSA:3.40.50.300 227 444 3.2E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06945 6232c7c4505b74d0ae55ead29e217c32 236 Gene3D G3DSA:3.40.50.300 1 225 5.2E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06945 6232c7c4505b74d0ae55ead29e217c32 236 SMART SM00382 26 215 4.3E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS06945 6232c7c4505b74d0ae55ead29e217c32 236 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS06945 6232c7c4505b74d0ae55ead29e217c32 236 PANTHER PTHR24220:SF358 3 232 4.7E-99 T 23-04-2016 RD1_RS06945 6232c7c4505b74d0ae55ead29e217c32 236 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 208 229 4.2E-10 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD1_RS06945 6232c7c4505b74d0ae55ead29e217c32 236 PANTHER PTHR24220 3 232 4.7E-99 T 23-04-2016 RD1_RS06945 6232c7c4505b74d0ae55ead29e217c32 236 SUPERFAMILY SSF52540 1 230 7.88E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06945 6232c7c4505b74d0ae55ead29e217c32 236 Pfam PF00005 ABC transporter 18 157 1.4E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS11500 08c3db35c73f48c7d409e05db46a893e 298 SUPERFAMILY SSF53850 90 283 5.79E-20 T 23-04-2016 RD1_RS11500 08c3db35c73f48c7d409e05db46a893e 298 Gene3D G3DSA:1.10.10.10 1 83 4.8E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11500 08c3db35c73f48c7d409e05db46a893e 298 PANTHER PTHR30537 1 298 1.1E-40 T 23-04-2016 RD1_RS11500 08c3db35c73f48c7d409e05db46a893e 298 SUPERFAMILY SSF46785 1 108 1.29E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11500 08c3db35c73f48c7d409e05db46a893e 298 Gene3D G3DSA:3.40.190.10 88 172 1.3E-6 T 23-04-2016 RD1_RS11500 08c3db35c73f48c7d409e05db46a893e 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 2.5E-11 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS11500 08c3db35c73f48c7d409e05db46a893e 298 PANTHER PTHR30537:SF3 1 298 1.1E-40 T 23-04-2016 RD1_RS11500 08c3db35c73f48c7d409e05db46a893e 298 Pfam PF03466 LysR substrate binding domain 88 280 3.9E-15 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS13060 43b097e05ad7b958255f6093c6089a6b 897 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 784 891 8.9E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS13060 43b097e05ad7b958255f6093c6089a6b 897 Gene3D G3DSA:1.10.287.130 663 723 3.9E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS13060 43b097e05ad7b958255f6093c6089a6b 897 Gene3D G3DSA:3.30.565.10 724 891 2.9E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS13060 43b097e05ad7b958255f6093c6089a6b 897 SMART SM00388 671 738 2.2E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS13060 43b097e05ad7b958255f6093c6089a6b 897 SUPERFAMILY SSF55874 727 890 1.15E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS13060 43b097e05ad7b958255f6093c6089a6b 897 SUPERFAMILY SSF47384 656 739 1.0E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS13060 43b097e05ad7b958255f6093c6089a6b 897 SMART SM00387 783 892 1.9E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS13060 43b097e05ad7b958255f6093c6089a6b 897 PANTHER PTHR24423 650 889 2.4E-58 T 23-04-2016 RD1_RS13060 43b097e05ad7b958255f6093c6089a6b 897 Pfam PF00512 His Kinase A (phospho-acceptor) domain 672 738 2.1E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS13060 43b097e05ad7b958255f6093c6089a6b 897 PRINTS PR00344 Bacterial sensor protein C-terminal signature 821 835 5.5E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS13060 43b097e05ad7b958255f6093c6089a6b 897 PRINTS PR00344 Bacterial sensor protein C-terminal signature 876 889 5.5E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS13060 43b097e05ad7b958255f6093c6089a6b 897 PRINTS PR00344 Bacterial sensor protein C-terminal signature 853 871 5.5E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS13060 43b097e05ad7b958255f6093c6089a6b 897 PRINTS PR00344 Bacterial sensor protein C-terminal signature 839 849 5.5E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS19185 5597c7bfcdccb133322ce428cdb8aa92 103 SUPERFAMILY SSF54909 2 102 1.11E-28 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS19185 5597c7bfcdccb133322ce428cdb8aa92 103 PANTHER PTHR34474 2 86 3.0E-26 T 23-04-2016 RD1_RS19185 5597c7bfcdccb133322ce428cdb8aa92 103 PANTHER PTHR34474:SF2 2 86 3.0E-26 T 23-04-2016 RD1_RS19185 5597c7bfcdccb133322ce428cdb8aa92 103 Gene3D G3DSA:3.30.70.900 2 101 1.2E-31 T 23-04-2016 RD1_RS19185 5597c7bfcdccb133322ce428cdb8aa92 103 Pfam PF03992 Antibiotic biosynthesis monooxygenase 2 79 7.4E-16 T 23-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain RD1_RS13220 3064b857fbd155a996a340d30722888f 665 PANTHER PTHR32438:SF5 153 656 5.9E-90 T 23-04-2016 RD1_RS13220 3064b857fbd155a996a340d30722888f 665 Gene3D G3DSA:3.20.20.80 151 643 3.5E-117 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RD1_RS13220 3064b857fbd155a996a340d30722888f 665 Pfam PF02446 4-alpha-glucanotransferase 169 632 1.2E-90 T 23-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RD1_RS13220 3064b857fbd155a996a340d30722888f 665 SUPERFAMILY SSF51445 153 549 1.47E-114 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RD1_RS13220 3064b857fbd155a996a340d30722888f 665 SUPERFAMILY SSF51445 576 646 1.47E-114 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RD1_RS13220 3064b857fbd155a996a340d30722888f 665 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 238 642 2.3E-68 T 23-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RD1_RS13220 3064b857fbd155a996a340d30722888f 665 PANTHER PTHR32438 153 656 5.9E-90 T 23-04-2016 RD1_RS15110 4c8c536f648af1ebc9fbbc47423aa5ae 199 PANTHER PTHR10884 1 197 3.3E-83 T 23-04-2016 RD1_RS15110 4c8c536f648af1ebc9fbbc47423aa5ae 199 SUPERFAMILY SSF143243 7 185 7.85E-61 T 23-04-2016 RD1_RS15110 4c8c536f648af1ebc9fbbc47423aa5ae 199 PANTHER PTHR10884:SF6 1 197 3.3E-83 T 23-04-2016 RD1_RS15110 4c8c536f648af1ebc9fbbc47423aa5ae 199 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 8 160 32.017 T 23-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 RD1_RS15110 4c8c536f648af1ebc9fbbc47423aa5ae 199 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 33 151 2.7E-44 T 23-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 RD1_RS15110 4c8c536f648af1ebc9fbbc47423aa5ae 199 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 84 139 3.0E-23 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 RD1_RS15110 4c8c536f648af1ebc9fbbc47423aa5ae 199 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 113 134 - T 23-04-2016 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 RD1_RS15110 4c8c536f648af1ebc9fbbc47423aa5ae 199 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 33 153 1.9E-44 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 RD1_RS03435 24c423874abc73ae0c836c18dfb3aeef 198 PANTHER PTHR20857 1 196 1.7E-48 T 23-04-2016 RD1_RS03435 24c423874abc73ae0c836c18dfb3aeef 198 Pfam PF02581 Thiamine monophosphate synthase/TENI 11 180 2.6E-51 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS03435 24c423874abc73ae0c836c18dfb3aeef 198 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 13 191 7.5E-47 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS03435 24c423874abc73ae0c836c18dfb3aeef 198 Gene3D G3DSA:3.20.20.70 4 195 1.2E-58 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS03435 24c423874abc73ae0c836c18dfb3aeef 198 SUPERFAMILY SSF51391 2 196 1.28E-63 T 23-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS09850 da92a279405733f106cf8ac4ad08b72c 389 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 85 297 4.1E-68 T 23-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 RD1_RS09850 da92a279405733f106cf8ac4ad08b72c 389 PANTHER PTHR32039 24 388 2.1E-91 T 23-04-2016 RD1_RS09850 da92a279405733f106cf8ac4ad08b72c 389 SUPERFAMILY SSF102405 95 297 4.58E-44 T 23-04-2016 RD1_RS09850 da92a279405733f106cf8ac4ad08b72c 389 Pfam PF02481 DNA recombination-mediator protein A 85 288 1.4E-72 T 23-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 RD1_RS09850 da92a279405733f106cf8ac4ad08b72c 389 Gene3D G3DSA:3.40.50.450 125 283 3.2E-12 T 23-04-2016 RD1_RS09850 da92a279405733f106cf8ac4ad08b72c 389 PANTHER PTHR32039:SF8 24 388 2.1E-91 T 23-04-2016 RD1_RS03755 a19725bab7507ec296ff428151c33e58 280 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 12 273 33.18 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS03755 a19725bab7507ec296ff428151c33e58 280 SUPERFAMILY SSF54506 141 271 1.73E-45 T 23-04-2016 RD1_RS03755 a19725bab7507ec296ff428151c33e58 280 Pfam PF01678 Diaminopimelate epimerase 14 128 9.6E-23 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS03755 a19725bab7507ec296ff428151c33e58 280 Pfam PF01678 Diaminopimelate epimerase 153 265 4.2E-28 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS03755 a19725bab7507ec296ff428151c33e58 280 SUPERFAMILY SSF54506 12 136 1.66E-38 T 23-04-2016 RD1_RS03755 a19725bab7507ec296ff428151c33e58 280 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 72 86 - T 23-04-2016 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS03755 a19725bab7507ec296ff428151c33e58 280 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 14 272 2.4E-77 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS03755 a19725bab7507ec296ff428151c33e58 280 Gene3D G3DSA:3.10.310.10 13 126 3.0E-38 T 23-04-2016 RD1_RS03755 a19725bab7507ec296ff428151c33e58 280 Gene3D G3DSA:3.10.310.10 127 261 8.3E-48 T 23-04-2016 RD1_RS03755 a19725bab7507ec296ff428151c33e58 280 PANTHER PTHR31689 12 277 9.7E-98 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS12850 7ffddbb2276241cfe65410b4e23928fd 231 Gene3D G3DSA:3.30.2010.10 33 118 1.1E-16 T 23-04-2016 RD1_RS12850 7ffddbb2276241cfe65410b4e23928fd 231 PANTHER PTHR22726 36 222 1.6E-31 T 23-04-2016 RD1_RS12850 7ffddbb2276241cfe65410b4e23928fd 231 Pfam PF01435 Peptidase family M48 37 221 2.2E-25 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RD1_RS11890 e22611cbe9c7f45d5f97f822b9a4ca68 347 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 147 345 3.1E-32 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11890 e22611cbe9c7f45d5f97f822b9a4ca68 347 PANTHER PTHR30465 1 82 5.6E-66 T 23-04-2016 RD1_RS11890 e22611cbe9c7f45d5f97f822b9a4ca68 347 PANTHER PTHR30465 110 346 5.6E-66 T 23-04-2016 RD1_RS11890 e22611cbe9c7f45d5f97f822b9a4ca68 347 PANTHER PTHR30465:SF24 1 82 5.6E-66 T 23-04-2016 RD1_RS11890 e22611cbe9c7f45d5f97f822b9a4ca68 347 PANTHER PTHR30465:SF24 110 346 5.6E-66 T 23-04-2016 RD1_RS11890 e22611cbe9c7f45d5f97f822b9a4ca68 347 SUPERFAMILY SSF161098 125 332 6.54E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11890 e22611cbe9c7f45d5f97f822b9a4ca68 347 Gene3D G3DSA:1.10.3720.10 127 335 7.9E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17945 2acd1f8ec5ac3f428158f45c87b0166b 166 Pfam PF02130 Uncharacterized protein family UPF0054 16 157 8.9E-30 T 23-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RD1_RS17945 2acd1f8ec5ac3f428158f45c87b0166b 166 PANTHER PTHR22881 5 166 2.7E-29 T 23-04-2016 RD1_RS17945 2acd1f8ec5ac3f428158f45c87b0166b 166 SUPERFAMILY SSF55486 2 165 5.86E-39 T 23-04-2016 RD1_RS17945 2acd1f8ec5ac3f428158f45c87b0166b 166 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 128 138 - T 23-04-2016 IPR020549 Endoribonuclease YbeY, conserved site RD1_RS17945 2acd1f8ec5ac3f428158f45c87b0166b 166 Gene3D G3DSA:3.40.390.30 19 165 1.2E-37 T 23-04-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 RD1_RS17945 2acd1f8ec5ac3f428158f45c87b0166b 166 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 2 162 20.394 T 23-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RD1_RS17945 2acd1f8ec5ac3f428158f45c87b0166b 166 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 40 158 8.3E-29 T 23-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RD1_RS16265 ff991e777585371d0a787befae2ea8b4 291 Pfam PF00231 ATP synthase 3 291 7.1E-92 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RD1_RS16265 ff991e777585371d0a787befae2ea8b4 291 SUPERFAMILY SSF52943 3 291 2.35E-89 T 23-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain RD1_RS16265 ff991e777585371d0a787befae2ea8b4 291 Gene3D G3DSA:1.10.287.80 19 60 6.7E-33 T 23-04-2016 RD1_RS16265 ff991e777585371d0a787befae2ea8b4 291 Gene3D G3DSA:1.10.287.80 206 240 6.7E-33 T 23-04-2016 RD1_RS16265 ff991e777585371d0a787befae2ea8b4 291 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 277 290 - T 23-04-2016 IPR023632 ATPase, F1 complex, gamma subunit conserved site RD1_RS16265 ff991e777585371d0a787befae2ea8b4 291 Gene3D G3DSA:3.40.1380.10 73 195 2.8E-35 T 23-04-2016 RD1_RS16265 ff991e777585371d0a787befae2ea8b4 291 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 291 1.8E-103 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RD1_RS16265 ff991e777585371d0a787befae2ea8b4 291 PIRSF PIRSF039089 1 291 1.3E-107 T 23-04-2016 RD1_RS16265 ff991e777585371d0a787befae2ea8b4 291 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 291 33.793 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RD1_RS16265 ff991e777585371d0a787befae2ea8b4 291 PANTHER PTHR11693 1 291 1.0E-127 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RD1_RS16265 ff991e777585371d0a787befae2ea8b4 291 Gene3D G3DSA:1.10.287.80 241 286 1.2E-28 T 23-04-2016 RD1_RS16265 ff991e777585371d0a787befae2ea8b4 291 PRINTS PR00126 ATP synthase gamma subunit signature 171 188 1.2E-32 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RD1_RS16265 ff991e777585371d0a787befae2ea8b4 291 PRINTS PR00126 ATP synthase gamma subunit signature 76 95 1.2E-32 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RD1_RS16265 ff991e777585371d0a787befae2ea8b4 291 PRINTS PR00126 ATP synthase gamma subunit signature 269 290 1.2E-32 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RD1_RS16265 ff991e777585371d0a787befae2ea8b4 291 PRINTS PR00126 ATP synthase gamma subunit signature 238 257 1.2E-32 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RD1_RS14630 674af719d7438acfa26c6f9fa663530f 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 238 259 1.0E-24 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RD1_RS14630 674af719d7438acfa26c6f9fa663530f 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 64 73 1.0E-24 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RD1_RS14630 674af719d7438acfa26c6f9fa663530f 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 207 225 1.0E-24 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RD1_RS14630 674af719d7438acfa26c6f9fa663530f 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 1.0E-24 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RD1_RS14630 674af719d7438acfa26c6f9fa663530f 473 SUPERFAMILY SSF52374 3 328 1.42E-82 T 23-04-2016 RD1_RS14630 674af719d7438acfa26c6f9fa663530f 473 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 460 1.7E-124 T 23-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 RD1_RS14630 674af719d7438acfa26c6f9fa663530f 473 Gene3D G3DSA:1.20.120.640 331 378 1.8E-4 T 23-04-2016 RD1_RS14630 674af719d7438acfa26c6f9fa663530f 473 PANTHER PTHR10890 1 460 6.5E-173 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RD1_RS14630 674af719d7438acfa26c6f9fa663530f 473 SUPERFAMILY SSF47323 346 460 5.89E-19 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS14630 674af719d7438acfa26c6f9fa663530f 473 Gene3D G3DSA:3.40.50.620 19 321 3.2E-94 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS14630 674af719d7438acfa26c6f9fa663530f 473 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 328 5.6E-104 T 23-04-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 RD1_RS14630 674af719d7438acfa26c6f9fa663530f 473 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 461 34.538 T 23-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 RD1_RS04540 91343906973f94c966a95a0643046231 422 Gene3D G3DSA:1.10.3720.10 222 416 3.1E-32 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04540 91343906973f94c966a95a0643046231 422 PANTHER PTHR30151:SF0 196 421 1.0E-82 T 23-04-2016 RD1_RS04540 91343906973f94c966a95a0643046231 422 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 246 413 2.7E-26 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04540 91343906973f94c966a95a0643046231 422 SUPERFAMILY SSF161098 224 408 1.96E-36 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04540 91343906973f94c966a95a0643046231 422 PANTHER PTHR30151 196 421 1.0E-82 T 23-04-2016 RD1_RS08325 9901012370bbd271912362a595a5c9f6 160 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 17 154 1.5E-32 T 23-04-2016 IPR011605 NusB antitermination factor GO:0006353 RD1_RS08325 9901012370bbd271912362a595a5c9f6 160 Pfam PF01029 NusB family 19 153 4.1E-28 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RD1_RS08325 9901012370bbd271912362a595a5c9f6 160 PANTHER PTHR11078 19 159 2.9E-25 T 23-04-2016 IPR011605 NusB antitermination factor GO:0006353 RD1_RS08325 9901012370bbd271912362a595a5c9f6 160 Gene3D G3DSA:1.10.940.10 14 156 1.6E-30 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RD1_RS08325 9901012370bbd271912362a595a5c9f6 160 SUPERFAMILY SSF48013 16 157 3.14E-29 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RD1_RS08550 ba9c1400daa0e8b00b495cea026b9d35 88 PANTHER PTHR33609 2 86 1.3E-35 T 23-04-2016 RD1_RS08550 ba9c1400daa0e8b00b495cea026b9d35 88 SUPERFAMILY SSF46689 1 71 3.76E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS08550 ba9c1400daa0e8b00b495cea026b9d35 88 Pfam PF01527 Transposase 2 71 2.3E-23 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RD1_RS08550 ba9c1400daa0e8b00b495cea026b9d35 88 Gene3D G3DSA:1.10.10.60 8 84 2.7E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS05245 ba9c1400daa0e8b00b495cea026b9d35 88 PANTHER PTHR33609 2 86 1.3E-35 T 23-04-2016 RD1_RS05245 ba9c1400daa0e8b00b495cea026b9d35 88 SUPERFAMILY SSF46689 1 71 3.76E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS05245 ba9c1400daa0e8b00b495cea026b9d35 88 Pfam PF01527 Transposase 2 71 2.3E-23 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RD1_RS05245 ba9c1400daa0e8b00b495cea026b9d35 88 Gene3D G3DSA:1.10.10.60 8 84 2.7E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS15855 ba9c1400daa0e8b00b495cea026b9d35 88 PANTHER PTHR33609 2 86 1.3E-35 T 23-04-2016 RD1_RS15855 ba9c1400daa0e8b00b495cea026b9d35 88 SUPERFAMILY SSF46689 1 71 3.76E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS15855 ba9c1400daa0e8b00b495cea026b9d35 88 Pfam PF01527 Transposase 2 71 2.3E-23 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RD1_RS15855 ba9c1400daa0e8b00b495cea026b9d35 88 Gene3D G3DSA:1.10.10.60 8 84 2.7E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS00720 ba9c1400daa0e8b00b495cea026b9d35 88 PANTHER PTHR33609 2 86 1.3E-35 T 23-04-2016 RD1_RS00720 ba9c1400daa0e8b00b495cea026b9d35 88 SUPERFAMILY SSF46689 1 71 3.76E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS00720 ba9c1400daa0e8b00b495cea026b9d35 88 Pfam PF01527 Transposase 2 71 2.3E-23 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RD1_RS00720 ba9c1400daa0e8b00b495cea026b9d35 88 Gene3D G3DSA:1.10.10.60 8 84 2.7E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS17240 6cc32281fbcb8c89c1b990bc25e30109 279 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 219 232 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RD1_RS17240 6cc32281fbcb8c89c1b990bc25e30109 279 PANTHER PTHR10584 1 267 1.5E-45 T 23-04-2016 RD1_RS17240 6cc32281fbcb8c89c1b990bc25e30109 279 Gene3D G3DSA:3.40.1190.20 1 273 9.1E-58 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS17240 6cc32281fbcb8c89c1b990bc25e30109 279 Pfam PF00294 pfkB family carbohydrate kinase 3 263 1.6E-35 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RD1_RS17240 6cc32281fbcb8c89c1b990bc25e30109 279 PRINTS PR00990 Ribokinase signature 194 205 1.2E-19 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RD1_RS17240 6cc32281fbcb8c89c1b990bc25e30109 279 PRINTS PR00990 Ribokinase signature 167 182 1.2E-19 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RD1_RS17240 6cc32281fbcb8c89c1b990bc25e30109 279 PRINTS PR00990 Ribokinase signature 32 51 1.2E-19 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RD1_RS17240 6cc32281fbcb8c89c1b990bc25e30109 279 PRINTS PR00990 Ribokinase signature 5 26 1.2E-19 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RD1_RS17240 6cc32281fbcb8c89c1b990bc25e30109 279 SUPERFAMILY SSF53613 1 261 8.26E-50 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS17240 6cc32281fbcb8c89c1b990bc25e30109 279 PANTHER PTHR10584:SF166 1 267 1.5E-45 T 23-04-2016 RD1_RS18535 56835d879f09c821b890b51b9566754a 677 Gene3D G3DSA:3.40.50.150 178 432 2.2E-26 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS18535 56835d879f09c821b890b51b9566754a 677 PANTHER PTHR30195:SF10 99 512 2.8E-77 T 23-04-2016 RD1_RS18535 56835d879f09c821b890b51b9566754a 677 PANTHER PTHR30195 99 512 2.8E-77 T 23-04-2016 RD1_RS18535 56835d879f09c821b890b51b9566754a 677 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 210 224 4.1E-8 T 23-04-2016 RD1_RS18535 56835d879f09c821b890b51b9566754a 677 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 293 305 4.1E-8 T 23-04-2016 RD1_RS18535 56835d879f09c821b890b51b9566754a 677 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 176 192 4.1E-8 T 23-04-2016 RD1_RS18535 56835d879f09c821b890b51b9566754a 677 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 296 302 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RD1_RS18535 56835d879f09c821b890b51b9566754a 677 Pfam PF02384 N-6 DNA Methylase 155 463 3.0E-52 T 23-04-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 RD1_RS18535 56835d879f09c821b890b51b9566754a 677 Pfam PF12161 HsdM N-terminal domain 11 141 1.9E-17 T 23-04-2016 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain RD1_RS18535 56835d879f09c821b890b51b9566754a 677 SUPERFAMILY SSF53335 614 675 1.29E-100 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS18535 56835d879f09c821b890b51b9566754a 677 SUPERFAMILY SSF53335 11 48 1.29E-100 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS18535 56835d879f09c821b890b51b9566754a 677 SUPERFAMILY SSF53335 78 464 1.29E-100 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS14370 9a1c5932fb32a85f5c6f6a7fe0217e03 277 Gene3D G3DSA:1.10.8.10 1 85 3.0E-18 T 23-04-2016 RD1_RS14370 9a1c5932fb32a85f5c6f6a7fe0217e03 277 Pfam PF05175 Methyltransferase small domain 100 190 7.1E-14 T 23-04-2016 IPR007848 Methyltransferase small domain GO:0008168 RD1_RS14370 9a1c5932fb32a85f5c6f6a7fe0217e03 277 Gene3D G3DSA:3.40.50.150 88 274 2.4E-59 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS14370 9a1c5932fb32a85f5c6f6a7fe0217e03 277 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 3 275 38.238 T 23-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RD1_RS14370 9a1c5932fb32a85f5c6f6a7fe0217e03 277 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 179 185 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RD1_RS14370 9a1c5932fb32a85f5c6f6a7fe0217e03 277 SUPERFAMILY SSF53335 7 271 1.33E-46 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS14370 9a1c5932fb32a85f5c6f6a7fe0217e03 277 PANTHER PTHR18895 1 275 5.1E-78 T 23-04-2016 RD1_RS14370 9a1c5932fb32a85f5c6f6a7fe0217e03 277 PANTHER PTHR18895:SF64 1 275 5.1E-78 T 23-04-2016 RD1_RS14370 9a1c5932fb32a85f5c6f6a7fe0217e03 277 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 25 271 1.9E-75 T 23-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RD1_RS14370 9a1c5932fb32a85f5c6f6a7fe0217e03 277 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 4 273 4.5E-55 T 23-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 RD1_RS09480 7003e97b6de19ed9be651adbbd8b6c79 428 Pfam PF02687 FtsX-like permease family 289 421 7.0E-15 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RD1_RS09480 7003e97b6de19ed9be651adbbd8b6c79 428 PANTHER PTHR30489 1 428 6.0E-63 T 23-04-2016 RD1_RS09480 7003e97b6de19ed9be651adbbd8b6c79 428 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 11 428 1.1E-113 T 23-04-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 RD1_RS09480 7003e97b6de19ed9be651adbbd8b6c79 428 Pfam PF12704 MacB-like periplasmic core domain 33 255 5.5E-17 T 23-04-2016 IPR025857 MacB-like periplasmic core domain RD1_RS17735 e3b01850c0ee9019b2323af26c2f7dbd 282 PANTHER PTHR12110 1 277 1.4E-49 T 23-04-2016 RD1_RS17735 e3b01850c0ee9019b2323af26c2f7dbd 282 PANTHER PTHR12110:SF21 1 277 1.4E-49 T 23-04-2016 RD1_RS17735 e3b01850c0ee9019b2323af26c2f7dbd 282 Pfam PF01261 Xylose isomerase-like TIM barrel 23 220 2.1E-32 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS17735 e3b01850c0ee9019b2323af26c2f7dbd 282 Gene3D G3DSA:3.20.20.150 2 279 7.7E-86 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS17735 e3b01850c0ee9019b2323af26c2f7dbd 282 SUPERFAMILY SSF51658 2 261 1.57E-60 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS15390 f21b2a710536aa3e0e082ecc4e24e1f4 293 Pfam PF03799 Cell division protein FtsQ 154 267 3.7E-11 T 23-04-2016 IPR005548 Cell division protein FtsQ/DivIB RD1_RS15390 f21b2a710536aa3e0e082ecc4e24e1f4 293 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 51 285 24.071 T 23-04-2016 IPR026579 Cell division protein FtsQ GO:0000917 RD1_RS15390 f21b2a710536aa3e0e082ecc4e24e1f4 293 Pfam PF08478 POTRA domain, FtsQ-type 87 149 1.6E-4 T 23-04-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type RD1_RS15390 f21b2a710536aa3e0e082ecc4e24e1f4 293 PANTHER PTHR35851:SF1 2 292 4.9E-17 T 23-04-2016 RD1_RS15390 f21b2a710536aa3e0e082ecc4e24e1f4 293 PANTHER PTHR35851 2 292 4.9E-17 T 23-04-2016 RD1_RS19060 8d549bc8279ea52509d09c0e4525de76 858 Gene3D G3DSA:3.40.50.740 308 547 1.9E-85 T 23-04-2016 RD1_RS19060 8d549bc8279ea52509d09c0e4525de76 858 Gene3D G3DSA:3.40.50.740 54 125 1.9E-85 T 23-04-2016 RD1_RS19060 8d549bc8279ea52509d09c0e4525de76 858 SUPERFAMILY SSF53706 2 551 8.77E-169 T 23-04-2016 RD1_RS19060 8d549bc8279ea52509d09c0e4525de76 858 Gene3D G3DSA:3.40.228.10 126 307 5.4E-48 T 23-04-2016 RD1_RS19060 8d549bc8279ea52509d09c0e4525de76 858 PANTHER PTHR11615 3 693 6.4E-205 T 23-04-2016 RD1_RS19060 8d549bc8279ea52509d09c0e4525de76 858 Pfam PF01568 Molydopterin dinucleotide binding domain 559 669 2.4E-30 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 RD1_RS19060 8d549bc8279ea52509d09c0e4525de76 858 SMART SM00926 1 51 1.3E-17 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RD1_RS19060 8d549bc8279ea52509d09c0e4525de76 858 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 6 24 - T 23-04-2016 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 RD1_RS19060 8d549bc8279ea52509d09c0e4525de76 858 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 1 50 2.8E-15 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RD1_RS19060 8d549bc8279ea52509d09c0e4525de76 858 Pfam PF00384 Molybdopterin oxidoreductase 64 472 4.3E-67 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RD1_RS19060 8d549bc8279ea52509d09c0e4525de76 858 Gene3D G3DSA:2.20.25.90 3 49 4.9E-16 T 23-04-2016 RD1_RS19060 8d549bc8279ea52509d09c0e4525de76 858 SUPERFAMILY SSF50692 557 689 8.14E-39 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain RD1_RS19060 8d549bc8279ea52509d09c0e4525de76 858 Pfam PF04324 BFD-like [2Fe-2S] binding domain 801 849 9.6E-11 T 23-04-2016 IPR007419 BFD-like [2Fe-2S]-binding domain RD1_RS19060 8d549bc8279ea52509d09c0e4525de76 858 Gene3D G3DSA:2.40.40.20 558 683 1.4E-37 T 23-04-2016 RD1_RS19060 8d549bc8279ea52509d09c0e4525de76 858 PANTHER PTHR11615:SF119 3 693 6.4E-205 T 23-04-2016 RD1_RS11045 aef482aec77410f7d7988f9dea7df19e 271 Pfam PF00005 ABC transporter 20 173 6.1E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS11045 aef482aec77410f7d7988f9dea7df19e 271 Gene3D G3DSA:3.40.50.300 1 234 2.2E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11045 aef482aec77410f7d7988f9dea7df19e 271 PANTHER PTHR24220 3 243 2.7E-109 T 23-04-2016 RD1_RS11045 aef482aec77410f7d7988f9dea7df19e 271 SMART SM00382 26 222 1.6E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS11045 aef482aec77410f7d7988f9dea7df19e 271 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS11045 aef482aec77410f7d7988f9dea7df19e 271 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 1 242 2.1E-94 T 23-04-2016 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 RD1_RS11045 aef482aec77410f7d7988f9dea7df19e 271 SUPERFAMILY SSF52540 2 234 3.48E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11045 aef482aec77410f7d7988f9dea7df19e 271 PANTHER PTHR24220:SF408 3 243 2.7E-109 T 23-04-2016 RD1_RS11805 64668fda1dda86d272bfca08bcf57f04 201 PIRSF PIRSF016661 16 201 3.1E-41 T 23-04-2016 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 RD1_RS11805 64668fda1dda86d272bfca08bcf57f04 201 PANTHER PTHR34295:SF1 23 196 1.9E-33 T 23-04-2016 RD1_RS11805 64668fda1dda86d272bfca08bcf57f04 201 Pfam PF02632 BioY family 50 194 6.5E-31 T 23-04-2016 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 RD1_RS11805 64668fda1dda86d272bfca08bcf57f04 201 PANTHER PTHR34295 23 196 1.9E-33 T 23-04-2016 RD1_RS04965 405129d8a9097f6f5e9f21675b6e41cf 216 Gene3D G3DSA:3.40.50.150 7 148 2.9E-4 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS04965 405129d8a9097f6f5e9f21675b6e41cf 216 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 20 26 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RD1_RS04965 405129d8a9097f6f5e9f21675b6e41cf 216 PANTHER PTHR12829 6 188 3.5E-26 T 23-04-2016 RD1_RS04965 405129d8a9097f6f5e9f21675b6e41cf 216 Pfam PF05063 MT-A70 17 188 2.0E-31 T 23-04-2016 IPR007757 MT-A70-like GO:0006139|GO:0008168 RD1_RS04965 405129d8a9097f6f5e9f21675b6e41cf 216 SUPERFAMILY SSF53335 7 185 1.29E-13 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS11905 b098efb7b43512e943c645b8f24f4d5a 242 PIRSF PIRSF005650 5 242 1.4E-89 T 23-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RD1_RS11905 b098efb7b43512e943c645b8f24f4d5a 242 PANTHER PTHR21499:SF23 5 234 6.9E-106 T 23-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RD1_RS11905 b098efb7b43512e943c645b8f24f4d5a 242 PANTHER PTHR21499 5 234 6.9E-106 T 23-04-2016 RD1_RS11905 b098efb7b43512e943c645b8f24f4d5a 242 Pfam PF00696 Amino acid kinase family 11 220 3.9E-25 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RD1_RS11905 b098efb7b43512e943c645b8f24f4d5a 242 Gene3D G3DSA:3.40.1160.10 5 240 1.3E-80 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RD1_RS11905 b098efb7b43512e943c645b8f24f4d5a 242 Hamap MF_01220_B Uridylate kinase [pyrH]. 8 241 43.098 T 23-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RD1_RS11905 b098efb7b43512e943c645b8f24f4d5a 242 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 11 240 2.1E-96 T 23-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RD1_RS11905 b098efb7b43512e943c645b8f24f4d5a 242 SUPERFAMILY SSF53633 10 240 4.06E-67 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 Pfam PF02824 TGS domain 7 63 4.2E-9 T 23-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 SMART SM00863 172 223 8.2E-22 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 69 644 32.103 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 PANTHER PTHR11451:SF31 3 638 0.0 T 23-04-2016 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 PANTHER PTHR11451 3 638 0.0 T 23-04-2016 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 Gene3D G3DSA:3.30.930.10 246 538 8.0E-116 T 23-04-2016 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 SUPERFAMILY SSF55186 66 245 2.75E-58 T 23-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 SUPERFAMILY SSF55681 247 536 6.01E-95 T 23-04-2016 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 PRINTS PR01047 Threonyl-tRNA synthetase signature 544 556 1.7E-50 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 PRINTS PR01047 Threonyl-tRNA synthetase signature 372 395 1.7E-50 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 PRINTS PR01047 Threonyl-tRNA synthetase signature 517 530 1.7E-50 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 PRINTS PR01047 Threonyl-tRNA synthetase signature 339 367 1.7E-50 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 PRINTS PR01047 Threonyl-tRNA synthetase signature 474 502 1.7E-50 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 333 538 3.4E-40 T 23-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 SUPERFAMILY SSF52954 540 639 7.25E-26 T 23-04-2016 IPR004154 Anticodon-binding RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 Gene3D G3DSA:3.30.54.20 135 189 3.4E-20 T 23-04-2016 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 Gene3D G3DSA:3.40.50.800 541 638 3.1E-27 T 23-04-2016 IPR004154 Anticodon-binding RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 Gene3D G3DSA:3.30.980.10 69 132 9.9E-38 T 23-04-2016 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 Gene3D G3DSA:3.30.980.10 190 227 9.9E-38 T 23-04-2016 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 SUPERFAMILY SSF81271 4 63 1.61E-14 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 Pfam PF03129 Anticodon binding domain 551 627 1.9E-14 T 23-04-2016 IPR004154 Anticodon-binding RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 Gene3D G3DSA:3.10.20.30 3 66 5.8E-18 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 75 634 8.6E-200 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RD1_RS08705 25755a0d84bf8bbbd035b74c0fccc5b1 648 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 173 223 5.4E-12 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RD1_RS13210 5294c803bfabd3d45ec1e912f31638c4 636 Pfam PF02449 Beta-galactosidase 12 397 2.8E-145 T 23-04-2016 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RD1_RS13210 5294c803bfabd3d45ec1e912f31638c4 636 PANTHER PTHR36447 10 593 1.4E-160 T 23-04-2016 RD1_RS13210 5294c803bfabd3d45ec1e912f31638c4 636 Gene3D G3DSA:3.20.20.80 9 400 8.2E-137 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RD1_RS13210 5294c803bfabd3d45ec1e912f31638c4 636 SUPERFAMILY SSF51445 8 378 1.78E-123 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RD1_RS13210 5294c803bfabd3d45ec1e912f31638c4 636 PANTHER PTHR36447:SF1 10 593 1.4E-160 T 23-04-2016 RD1_RS13210 5294c803bfabd3d45ec1e912f31638c4 636 Gene3D G3DSA:3.40.50.880 405 594 7.2E-40 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS13210 5294c803bfabd3d45ec1e912f31638c4 636 Pfam PF08532 Beta-galactosidase trimerisation domain 406 591 1.4E-18 T 23-04-2016 IPR013738 Beta-galactosidase trimerisation GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RD1_RS13210 5294c803bfabd3d45ec1e912f31638c4 636 SUPERFAMILY SSF52317 404 591 6.87E-43 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS13210 5294c803bfabd3d45ec1e912f31638c4 636 PIRSF PIRSF001084 5 625 9.4E-165 T 23-04-2016 IPR003476 Glycoside hydrolase, family 42 GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RD1_RS04450 9d8ea4756d69264faaf73fa0ce91e0ab 288 Gene3D G3DSA:1.10.10.10 202 286 8.6E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04450 9d8ea4756d69264faaf73fa0ce91e0ab 288 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 204 284 2.7E-30 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RD1_RS04450 9d8ea4756d69264faaf73fa0ce91e0ab 288 SUPERFAMILY SSF46689 17 66 6.57E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS04450 9d8ea4756d69264faaf73fa0ce91e0ab 288 Pfam PF12833 Helix-turn-helix domain 39 116 2.1E-13 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS04450 9d8ea4756d69264faaf73fa0ce91e0ab 288 PANTHER PTHR10815:SF5 92 287 8.3E-54 T 23-04-2016 RD1_RS04450 9d8ea4756d69264faaf73fa0ce91e0ab 288 Gene3D G3DSA:3.30.160.70 109 196 1.7E-23 T 23-04-2016 RD1_RS04450 9d8ea4756d69264faaf73fa0ce91e0ab 288 Gene3D G3DSA:1.10.10.60 15 71 7.0E-21 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS04450 9d8ea4756d69264faaf73fa0ce91e0ab 288 SUPERFAMILY SSF46767 203 284 4.45E-30 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RD1_RS04450 9d8ea4756d69264faaf73fa0ce91e0ab 288 SUPERFAMILY SSF53155 121 198 2.75E-18 T 23-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 RD1_RS04450 9d8ea4756d69264faaf73fa0ce91e0ab 288 PANTHER PTHR10815 92 287 8.3E-54 T 23-04-2016 RD1_RS04450 9d8ea4756d69264faaf73fa0ce91e0ab 288 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 204 282 2.2E-30 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RD1_RS04450 9d8ea4756d69264faaf73fa0ce91e0ab 288 SMART SM00342 33 115 3.2E-14 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS08315 4648e6c3b56a2cb2edceeb23a2abee9a 374 PANTHER PTHR21327 17 371 3.0E-125 T 23-04-2016 RD1_RS08315 4648e6c3b56a2cb2edceeb23a2abee9a 374 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 21 212 5.2E-80 T 23-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS08315 4648e6c3b56a2cb2edceeb23a2abee9a 374 PIRSF PIRSF001259 15 374 3.0E-103 T 23-04-2016 RD1_RS08315 4648e6c3b56a2cb2edceeb23a2abee9a 374 SUPERFAMILY SSF55821 15 217 4.58E-83 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RD1_RS08315 4648e6c3b56a2cb2edceeb23a2abee9a 374 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 18 213 2.5E-70 T 23-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS08315 4648e6c3b56a2cb2edceeb23a2abee9a 374 Pfam PF00925 GTP cyclohydrolase II 224 368 1.4E-18 T 23-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 RD1_RS08315 4648e6c3b56a2cb2edceeb23a2abee9a 374 SUPERFAMILY SSF142695 220 372 6.28E-33 T 23-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 RD1_RS08315 4648e6c3b56a2cb2edceeb23a2abee9a 374 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 15 217 37.179 T 23-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS08315 4648e6c3b56a2cb2edceeb23a2abee9a 374 PANTHER PTHR21327:SF6 17 371 3.0E-125 T 23-04-2016 RD1_RS08315 4648e6c3b56a2cb2edceeb23a2abee9a 374 Gene3D G3DSA:3.90.870.10 15 223 6.9E-94 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RD1_RS01845 8b2b09ac69552ffd108296ac508bbc54 85 Pfam PF00462 Glutaredoxin 4 64 1.1E-21 T 23-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RD1_RS01845 8b2b09ac69552ffd108296ac508bbc54 85 SUPERFAMILY SSF52833 1 84 1.73E-28 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS01845 8b2b09ac69552ffd108296ac508bbc54 85 PANTHER PTHR10168 4 83 3.1E-24 T 23-04-2016 RD1_RS01845 8b2b09ac69552ffd108296ac508bbc54 85 PRINTS PR00160 Glutaredoxin signature 47 60 2.4E-14 T 23-04-2016 IPR014025 Glutaredoxin subgroup RD1_RS01845 8b2b09ac69552ffd108296ac508bbc54 85 PRINTS PR00160 Glutaredoxin signature 61 74 2.4E-14 T 23-04-2016 IPR014025 Glutaredoxin subgroup RD1_RS01845 8b2b09ac69552ffd108296ac508bbc54 85 PRINTS PR00160 Glutaredoxin signature 4 22 2.4E-14 T 23-04-2016 IPR014025 Glutaredoxin subgroup RD1_RS01845 8b2b09ac69552ffd108296ac508bbc54 85 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 83 1.2E-35 T 23-04-2016 IPR011900 Glutaredoxin, GrxC GO:0045454 RD1_RS01845 8b2b09ac69552ffd108296ac508bbc54 85 Gene3D G3DSA:3.40.30.10 1 74 1.1E-27 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 PANTHER PTHR11632 1 591 0.0 T 23-04-2016 RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 PANTHER PTHR11632:SF51 1 591 0.0 T 23-04-2016 RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 Pfam PF00890 FAD binding domain 12 408 4.3E-120 T 23-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 Gene3D G3DSA:3.50.50.60 3 246 3.9E-120 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 Gene3D G3DSA:3.50.50.60 354 424 3.9E-120 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 Pfam PF02910 Fumarate reductase flavoprotein C-term 463 599 2.1E-41 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 46 55 - T 23-04-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 Gene3D G3DSA:3.90.700.10 247 352 7.7E-40 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 SUPERFAMILY SSF51905 362 441 6.95E-78 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 SUPERFAMILY SSF51905 4 263 6.95E-78 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 Gene3D G3DSA:4.10.80.40 543 601 2.8E-24 T 23-04-2016 RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 Gene3D G3DSA:1.20.58.100 437 542 8.3E-35 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 PIRSF PIRSF000171 1 585 1.1E-33 T 23-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 SUPERFAMILY SSF46977 454 600 1.57E-43 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 SUPERFAMILY SSF56425 240 358 3.44E-40 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 12 581 6.9E-228 T 23-04-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RD1_RS07520 1091e4a936176c32a77724e3fda1087d 601 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 9 585 3.7E-273 T 23-04-2016 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RD1_RS05835 d4d4ec92a124e138762017d92d556661 366 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 6 46 6.6E-10 T 23-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RD1_RS05835 d4d4ec92a124e138762017d92d556661 366 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 181 363 1.6E-29 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS05835 d4d4ec92a124e138762017d92d556661 366 PANTHER PTHR30325 114 366 2.2E-155 T 23-04-2016 RD1_RS05835 d4d4ec92a124e138762017d92d556661 366 PANTHER PTHR30325 1 86 2.2E-155 T 23-04-2016 RD1_RS05835 d4d4ec92a124e138762017d92d556661 366 Gene3D G3DSA:1.10.3720.10 155 361 1.4E-21 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS05835 d4d4ec92a124e138762017d92d556661 366 SUPERFAMILY SSF161098 161 346 3.92E-21 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS16885 72866e72d6702e8a56a42fe0fb5ec458 347 SUPERFAMILY SSF53686 20 332 8.51E-71 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS16885 72866e72d6702e8a56a42fe0fb5ec458 347 PANTHER PTHR10314:SF126 1 344 9.6E-178 T 23-04-2016 RD1_RS16885 72866e72d6702e8a56a42fe0fb5ec458 347 Gene3D G3DSA:3.40.50.1100 142 330 5.4E-36 T 23-04-2016 RD1_RS16885 72866e72d6702e8a56a42fe0fb5ec458 347 Gene3D G3DSA:3.40.50.1100 45 141 5.0E-21 T 23-04-2016 RD1_RS16885 72866e72d6702e8a56a42fe0fb5ec458 347 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 27 313 9.2E-46 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS16885 72866e72d6702e8a56a42fe0fb5ec458 347 PANTHER PTHR10314 1 344 9.6E-178 T 23-04-2016 RD1_RS13035 b2baa4985a7d3e7e9617178b315668c3 189 SMART SM00855 5 156 1.1E-19 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RD1_RS13035 b2baa4985a7d3e7e9617178b315668c3 189 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 173 8.2E-35 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RD1_RS13035 b2baa4985a7d3e7e9617178b315668c3 189 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 8 17 - T 23-04-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 RD1_RS13035 b2baa4985a7d3e7e9617178b315668c3 189 SUPERFAMILY SSF53254 1 181 8.64E-43 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RD1_RS13035 b2baa4985a7d3e7e9617178b315668c3 189 PIRSF PIRSF000709 3 184 2.1E-9 T 23-04-2016 RD1_RS13035 b2baa4985a7d3e7e9617178b315668c3 189 PANTHER PTHR23029 6 163 5.8E-28 T 23-04-2016 RD1_RS13035 b2baa4985a7d3e7e9617178b315668c3 189 Gene3D G3DSA:3.40.50.1240 2 184 3.8E-41 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RD1_RS02140 5bc19e33422d668edbe34da8d78fb8ff 184 SUPERFAMILY SSF52172 12 170 4.84E-32 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS02140 5bc19e33422d668edbe34da8d78fb8ff 184 PANTHER PTHR26402:SF344 13 124 2.0E-52 T 23-04-2016 RD1_RS02140 5bc19e33422d668edbe34da8d78fb8ff 184 Gene3D G3DSA:1.10.10.60 127 183 4.1E-31 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS02140 5bc19e33422d668edbe34da8d78fb8ff 184 SMART SM00448 13 124 4.3E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS02140 5bc19e33422d668edbe34da8d78fb8ff 184 Pfam PF02954 Bacterial regulatory protein, Fis family 148 176 6.6E-5 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RD1_RS02140 5bc19e33422d668edbe34da8d78fb8ff 184 Gene3D G3DSA:3.40.50.2300 14 126 1.5E-27 T 23-04-2016 RD1_RS02140 5bc19e33422d668edbe34da8d78fb8ff 184 Pfam PF00072 Response regulator receiver domain 15 124 6.2E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS02140 5bc19e33422d668edbe34da8d78fb8ff 184 PANTHER PTHR26402 13 124 2.0E-52 T 23-04-2016 RD1_RS02920 8e70119fa788834d6ca6899c1d5ae292 325 SUPERFAMILY SSF53448 9 257 8.91E-25 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS02920 8e70119fa788834d6ca6899c1d5ae292 325 Gene3D G3DSA:3.90.550.10 8 233 5.7E-16 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS02920 8e70119fa788834d6ca6899c1d5ae292 325 Pfam PF13641 Glycosyltransferase like family 2 15 234 6.9E-15 T 23-04-2016 RD1_RS02475 af2021dca371244accbbabe8da9b871e 356 SUPERFAMILY SSF51905 307 344 1.52E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02475 af2021dca371244accbbabe8da9b871e 356 SUPERFAMILY SSF51905 4 214 1.52E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02475 af2021dca371244accbbabe8da9b871e 356 Pfam PF01593 Flavin containing amine oxidoreductase 108 344 2.6E-28 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RD1_RS02475 af2021dca371244accbbabe8da9b871e 356 Gene3D G3DSA:3.40.50.720 4 36 6.2E-9 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02475 af2021dca371244accbbabe8da9b871e 356 Gene3D G3DSA:3.90.660.10 131 293 5.3E-36 T 23-04-2016 RD1_RS02475 af2021dca371244accbbabe8da9b871e 356 Pfam PF13450 NAD(P)-binding Rossmann-like domain 11 75 2.1E-16 T 23-04-2016 RD1_RS02475 af2021dca371244accbbabe8da9b871e 356 PANTHER PTHR10742 5 347 8.6E-40 T 23-04-2016 RD1_RS02475 af2021dca371244accbbabe8da9b871e 356 Gene3D G3DSA:3.90.660.10 37 104 5.1E-6 T 23-04-2016 RD1_RS02475 af2021dca371244accbbabe8da9b871e 356 SUPERFAMILY SSF54373 196 293 7.2E-22 T 23-04-2016 RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 Gene3D G3DSA:4.10.860.10 647 689 2.0E-16 T 23-04-2016 IPR001943 UVR domain GO:0005515 RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 Gene3D G3DSA:3.40.50.300 415 436 4.8E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 Gene3D G3DSA:3.40.50.300 305 365 4.8E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 Gene3D G3DSA:3.40.50.300 33 116 4.8E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 SMART SM00490 487 573 1.6E-17 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 Pfam PF04851 Type III restriction enzyme, res subunit 40 166 2.6E-11 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 Pfam PF00271 Helicase conserved C-terminal domain 462 572 7.8E-18 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 Gene3D G3DSA:3.40.50.300 446 609 6.7E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 SMART SM00487 36 453 1.0E-18 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 SUPERFAMILY SSF52540 31 441 1.17E-123 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 PANTHER PTHR24029 26 708 0.0 T 23-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 Gene3D G3DSA:3.30.2060.10 187 259 1.6E-12 T 23-04-2016 RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 SUPERFAMILY SSF52540 60 109 1.77E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 Pfam PF02151 UvrB/uvrC motif 653 685 2.8E-9 T 23-04-2016 IPR001943 UVR domain GO:0005515 RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 Pfam PF12344 Ultra-violet resistance protein B 579 620 4.4E-24 T 23-04-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 SUPERFAMILY SSF52540 486 610 1.77E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 Hamap MF_00204 UvrABC system protein B [uvrB]. 30 686 41.279 T 23-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 31 683 3.9E-303 T 23-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RD1_RS05785 4995d15cd26bd9871b0a745567988529 732 SUPERFAMILY SSF46600 643 686 6.8E-11 T 23-04-2016 IPR001943 UVR domain GO:0005515 RD1_RS15845 b56ac7899152d8fdccc4b868890389a7 363 SUPERFAMILY SSF52540 37 91 5.61E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15845 b56ac7899152d8fdccc4b868890389a7 363 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 30 80 2.4E-8 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RD1_RS15845 b56ac7899152d8fdccc4b868890389a7 363 Gene3D G3DSA:3.40.50.300 33 102 1.3E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04260 49e46ede2f7903d995845b2715ade72c 492 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 39 486 4.9E-211 T 23-04-2016 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 UniPathway: UPA00733 RD1_RS04260 49e46ede2f7903d995845b2715ade72c 492 PANTHER PTHR11699:SF49 1 491 1.2E-277 T 23-04-2016 RD1_RS04260 49e46ede2f7903d995845b2715ade72c 492 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 292 303 - T 23-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RD1_RS04260 49e46ede2f7903d995845b2715ade72c 492 Gene3D G3DSA:3.40.605.10 19 278 5.7E-94 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RD1_RS04260 49e46ede2f7903d995845b2715ade72c 492 SUPERFAMILY SSF53720 13 491 5.63E-163 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS04260 49e46ede2f7903d995845b2715ade72c 492 PANTHER PTHR11699 1 491 1.2E-277 T 23-04-2016 RD1_RS04260 49e46ede2f7903d995845b2715ade72c 492 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 264 271 - T 23-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 RD1_RS04260 49e46ede2f7903d995845b2715ade72c 492 Pfam PF00171 Aldehyde dehydrogenase family 29 487 1.3E-162 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RD1_RS04260 49e46ede2f7903d995845b2715ade72c 492 Gene3D G3DSA:3.40.309.10 279 455 7.3E-68 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RD1_RS06590 1a3a8f09ef23fba9ce49c216e5c91485 130 Gene3D G3DSA:3.30.1490.10 74 130 4.5E-26 T 23-04-2016 RD1_RS06590 1a3a8f09ef23fba9ce49c216e5c91485 130 Pfam PF00410 Ribosomal protein S8 3 130 4.3E-47 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RD1_RS06590 1a3a8f09ef23fba9ce49c216e5c91485 130 Gene3D G3DSA:3.30.1370.30 1 71 1.5E-24 T 23-04-2016 RD1_RS06590 1a3a8f09ef23fba9ce49c216e5c91485 130 PANTHER PTHR11758 1 130 8.0E-51 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RD1_RS06590 1a3a8f09ef23fba9ce49c216e5c91485 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RD1_RS06590 1a3a8f09ef23fba9ce49c216e5c91485 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 1 130 28.338 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RD1_RS06590 1a3a8f09ef23fba9ce49c216e5c91485 130 SUPERFAMILY SSF56047 1 130 3.53E-44 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RD1_RS17390 b77878f47a185fa2e6dd14ef0668fb00 273 PANTHER PTHR31118:SF9 50 273 2.9E-56 T 23-04-2016 RD1_RS17390 b77878f47a185fa2e6dd14ef0668fb00 273 Gene3D G3DSA:3.50.30.50 50 273 1.2E-56 T 23-04-2016 RD1_RS17390 b77878f47a185fa2e6dd14ef0668fb00 273 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 14 38 4.8E-8 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RD1_RS17390 b77878f47a185fa2e6dd14ef0668fb00 273 Pfam PF04199 Putative cyclase 51 216 5.9E-32 T 23-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 RD1_RS17390 b77878f47a185fa2e6dd14ef0668fb00 273 PANTHER PTHR31118 50 273 2.9E-56 T 23-04-2016 RD1_RS17390 b77878f47a185fa2e6dd14ef0668fb00 273 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 15 44 1.2E-5 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RD1_RS17390 b77878f47a185fa2e6dd14ef0668fb00 273 SUPERFAMILY SSF102198 50 273 3.27E-53 T 23-04-2016 RD1_RS09370 a73642766d9a69cc3132861b373a13d8 552 SUPERFAMILY SSF54373 290 472 3.83E-62 T 23-04-2016 RD1_RS09370 a73642766d9a69cc3132861b373a13d8 552 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 79 102 - T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS09370 a73642766d9a69cc3132861b373a13d8 552 Pfam PF05199 GMC oxidoreductase 387 523 4.2E-42 T 23-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 RD1_RS09370 a73642766d9a69cc3132861b373a13d8 552 PANTHER PTHR11552 4 550 6.4E-229 T 23-04-2016 RD1_RS09370 a73642766d9a69cc3132861b373a13d8 552 TIGRFAM TIGR01810 betA: choline dehydrogenase 4 534 6.0E-252 T 23-04-2016 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 RD1_RS09370 a73642766d9a69cc3132861b373a13d8 552 SUPERFAMILY SSF51905 471 531 8.78E-89 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS09370 a73642766d9a69cc3132861b373a13d8 552 SUPERFAMILY SSF51905 1 288 8.78E-89 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS09370 a73642766d9a69cc3132861b373a13d8 552 PANTHER PTHR11552:SF51 4 550 6.4E-229 T 23-04-2016 RD1_RS09370 a73642766d9a69cc3132861b373a13d8 552 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 254 268 - T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS09370 a73642766d9a69cc3132861b373a13d8 552 Gene3D G3DSA:3.50.50.60 465 530 4.1E-118 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS09370 a73642766d9a69cc3132861b373a13d8 552 Gene3D G3DSA:3.50.50.60 2 123 4.1E-118 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS09370 a73642766d9a69cc3132861b373a13d8 552 Gene3D G3DSA:3.50.50.60 188 313 4.1E-118 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS09370 a73642766d9a69cc3132861b373a13d8 552 Pfam PF00732 GMC oxidoreductase 4 295 1.7E-94 T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS09370 a73642766d9a69cc3132861b373a13d8 552 PIRSF PIRSF000137 2 540 1.2E-139 T 23-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 RD1_RS20435 89d22106fe1fff5295716b7496f4df0f 647 PANTHER PTHR22870 351 642 3.1E-57 T 23-04-2016 RD1_RS20435 89d22106fe1fff5295716b7496f4df0f 647 PANTHER PTHR22870 36 53 3.1E-57 T 23-04-2016 RD1_RS20435 89d22106fe1fff5295716b7496f4df0f 647 SUPERFAMILY SSF50985 368 629 1.05E-58 T 23-04-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II RD1_RS20435 89d22106fe1fff5295716b7496f4df0f 647 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 494 541 7.1E-14 T 23-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 RD1_RS20435 89d22106fe1fff5295716b7496f4df0f 647 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 441 490 4.3E-10 T 23-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 RD1_RS20435 89d22106fe1fff5295716b7496f4df0f 647 Gene3D G3DSA:2.130.10.30 333 631 1.4E-63 T 23-04-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II RD1_RS20435 89d22106fe1fff5295716b7496f4df0f 647 ProSitePatterns PS00018 EF-hand calcium-binding domain. 209 221 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site RD1_RS20435 89d22106fe1fff5295716b7496f4df0f 647 Gene3D G3DSA:1.10.238.10 209 275 7.6E-4 T 23-04-2016 IPR011992 EF-hand domain pair RD1_RS20435 89d22106fe1fff5295716b7496f4df0f 647 ProSitePatterns PS00626 Regulator of chromosome condensation (RCC1) signature 2. 428 438 - T 23-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 RD1_RS20435 89d22106fe1fff5295716b7496f4df0f 647 ProSitePatterns PS00626 Regulator of chromosome condensation (RCC1) signature 2. 531 541 - T 23-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 RD1_RS20435 89d22106fe1fff5295716b7496f4df0f 647 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 425 438 1.22E-9 T 23-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 RD1_RS20435 89d22106fe1fff5295716b7496f4df0f 647 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 495 511 1.22E-9 T 23-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 RD1_RS20435 89d22106fe1fff5295716b7496f4df0f 647 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 444 460 1.22E-9 T 23-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 RD1_RS20435 89d22106fe1fff5295716b7496f4df0f 647 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 531 547 1.22E-9 T 23-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 RD1_RS20435 89d22106fe1fff5295716b7496f4df0f 647 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 388 404 1.22E-9 T 23-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 RD1_RS09920 0d7c658419f5b8c0d351bd31e3723736 176 Pfam PF00156 Phosphoribosyl transferase domain 46 152 2.8E-15 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RD1_RS09920 0d7c658419f5b8c0d351bd31e3723736 176 Gene3D G3DSA:3.40.50.2020 2 174 2.0E-65 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS09920 0d7c658419f5b8c0d351bd31e3723736 176 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 4 173 37.275 T 23-04-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 RD1_RS09920 0d7c658419f5b8c0d351bd31e3723736 176 PANTHER PTHR32315 1 176 8.5E-82 T 23-04-2016 RD1_RS09920 0d7c658419f5b8c0d351bd31e3723736 176 SUPERFAMILY SSF53271 6 174 1.85E-51 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS09920 0d7c658419f5b8c0d351bd31e3723736 176 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 5 172 9.9E-67 T 23-04-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 RD1_RS14815 6332ef99184a77da1b68e94e5f6b80ce 342 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 3 336 37.071 T 23-04-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS14815 6332ef99184a77da1b68e94e5f6b80ce 342 PANTHER PTHR32338 5 342 3.8E-153 T 23-04-2016 RD1_RS14815 6332ef99184a77da1b68e94e5f6b80ce 342 Gene3D G3DSA:3.30.360.10 159 310 9.4E-50 T 23-04-2016 RD1_RS14815 6332ef99184a77da1b68e94e5f6b80ce 342 SUPERFAMILY SSF55347 149 310 2.88E-45 T 23-04-2016 RD1_RS14815 6332ef99184a77da1b68e94e5f6b80ce 342 Gene3D G3DSA:3.40.50.720 1 158 4.6E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS14815 6332ef99184a77da1b68e94e5f6b80ce 342 SMART SM00859 4 141 8.8E-50 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RD1_RS14815 6332ef99184a77da1b68e94e5f6b80ce 342 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 158 313 3.6E-16 T 23-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS14815 6332ef99184a77da1b68e94e5f6b80ce 342 PANTHER PTHR32338:SF8 5 342 3.8E-153 T 23-04-2016 RD1_RS14815 6332ef99184a77da1b68e94e5f6b80ce 342 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 4 342 3.3E-110 T 23-04-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS14815 6332ef99184a77da1b68e94e5f6b80ce 342 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 141 1.6E-27 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RD1_RS14815 6332ef99184a77da1b68e94e5f6b80ce 342 SUPERFAMILY SSF51735 3 172 4.7E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 PIRSF PIRSF001553 1 294 1.5E-129 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 PANTHER PTHR11117 1 294 3.0E-190 T 23-04-2016 RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 Pfam PF02629 CoA binding domain 6 99 2.7E-31 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 290 5.8E-139 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 Pfam PF00549 CoA-ligase 151 275 8.4E-19 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 Gene3D G3DSA:3.40.50.720 3 119 8.7E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 SUPERFAMILY SSF52210 123 290 2.35E-51 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 Gene3D G3DSA:3.40.50.261 120 291 1.8E-69 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 240 253 - T 23-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 SMART SM00881 4 100 2.6E-34 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 9.1E-40 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 9.1E-40 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 PRINTS PR01798 Succinyl-CoA synthase signature 244 261 9.1E-40 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 9.1E-40 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RD1_RS07435 86b82a310114dd4580c702522b65b40d 295 SUPERFAMILY SSF51735 1 122 2.95E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 Gene3D G3DSA:3.50.50.60 144 225 2.0E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 Gene3D G3DSA:3.50.50.60 4 85 2.0E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 Gene3D G3DSA:3.50.50.60 339 396 2.0E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 PANTHER PTHR13847:SF193 3 456 6.2E-123 T 23-04-2016 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 Pfam PF01266 FAD dependent oxidoreductase 9 376 4.6E-51 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 Pfam PF16350 FAD dependent oxidoreductase central domain 380 434 8.0E-16 T 23-04-2016 IPR032503 FAD dependent oxidoreductase, central domain RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 SUPERFAMILY SSF101790 728 816 7.85E-20 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 Gene3D G3DSA:3.30.9.10 226 337 2.2E-48 T 23-04-2016 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 Gene3D G3DSA:3.30.9.10 90 143 2.2E-48 T 23-04-2016 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 Gene3D G3DSA:2.40.30.110 724 801 1.2E-21 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 Gene3D G3DSA:3.30.1360.120 432 504 2.7E-28 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 Gene3D G3DSA:3.30.1360.120 591 680 2.7E-28 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 Pfam PF01571 Aminomethyltransferase folate-binding domain 439 702 6.6E-54 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 PANTHER PTHR13847 3 456 6.2E-123 T 23-04-2016 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 SUPERFAMILY SSF103025 429 726 7.53E-76 T 23-04-2016 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 Gene3D G3DSA:3.30.70.1400 505 579 8.0E-12 T 23-04-2016 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 SUPERFAMILY SSF54373 227 337 2.24E-30 T 23-04-2016 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 711 801 1.2E-21 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 SUPERFAMILY SSF51905 339 398 2.1E-58 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00090 b00d3a8294512c29b1595e6243e8de53 816 SUPERFAMILY SSF51905 8 225 2.1E-58 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10875 044bf923faa776d4d2194a4b3274473b 297 Pfam PF01522 Polysaccharide deacetylase 15 156 3.5E-12 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RD1_RS10875 044bf923faa776d4d2194a4b3274473b 297 PANTHER PTHR10587 15 172 2.2E-24 T 23-04-2016 RD1_RS10875 044bf923faa776d4d2194a4b3274473b 297 SUPERFAMILY SSF88713 4 270 2.37E-55 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RD1_RS10875 044bf923faa776d4d2194a4b3274473b 297 Gene3D G3DSA:3.20.20.370 4 270 1.1E-67 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RD1_RS10875 044bf923faa776d4d2194a4b3274473b 297 PANTHER PTHR10587:SF74 15 172 2.2E-24 T 23-04-2016 RD1_RS19205 f1265cda503656bb450912e60bd60129 224 PANTHER PTHR30625 8 220 7.7E-28 T 23-04-2016 RD1_RS19205 f1265cda503656bb450912e60bd60129 224 Pfam PF01618 MotA/TolQ/ExbB proton channel family 79 193 9.0E-29 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RD1_RS13315 50e5c29468432fb7b39b73e260e21bbe 396 PANTHER PTHR21152:SF21 8 387 7.6E-137 T 23-04-2016 RD1_RS13315 50e5c29468432fb7b39b73e260e21bbe 396 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 187 207 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RD1_RS13315 50e5c29468432fb7b39b73e260e21bbe 396 Pfam PF00266 Aminotransferase class-V 11 293 1.0E-33 T 23-04-2016 IPR000192 Aminotransferase class V domain RD1_RS13315 50e5c29468432fb7b39b73e260e21bbe 396 Gene3D G3DSA:3.90.1150.10 260 370 6.8E-36 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS13315 50e5c29468432fb7b39b73e260e21bbe 396 PIRSF PIRSF000524 1 390 1.1E-130 T 23-04-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RD1_RS13315 50e5c29468432fb7b39b73e260e21bbe 396 SUPERFAMILY SSF53383 8 369 3.63E-103 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS13315 50e5c29468432fb7b39b73e260e21bbe 396 PANTHER PTHR21152 8 387 7.6E-137 T 23-04-2016 RD1_RS13315 50e5c29468432fb7b39b73e260e21bbe 396 Gene3D G3DSA:3.40.640.10 17 259 1.8E-52 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 Gene3D G3DSA:2.40.50.100 64 95 1.5E-15 T 23-04-2016 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 Gene3D G3DSA:2.40.50.100 283 317 1.5E-15 T 23-04-2016 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 24 435 1.9E-105 T 23-04-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 PANTHER PTHR30386:SF4 22 116 6.5E-98 T 23-04-2016 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 PANTHER PTHR30386:SF4 162 435 6.5E-98 T 23-04-2016 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 PANTHER PTHR30386 22 116 6.5E-98 T 23-04-2016 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 PANTHER PTHR30386 162 435 6.5E-98 T 23-04-2016 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 ProSitePatterns PS00543 HlyD family secretion proteins signature. 399 421 - T 23-04-2016 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 399 414 2.4E-45 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 331 355 2.4E-45 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 31 54 2.4E-45 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 414 434 2.4E-45 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 298 319 2.4E-45 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 355 378 2.4E-45 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 73 93 2.4E-45 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS05160 4e1466823f3e3e42ba399d3e0c725787 435 Pfam PF13437 HlyD family secretion protein 286 389 8.9E-17 T 23-04-2016 RD1_RS16800 73f9d796e3d358c5249e13e646754332 416 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 124 409 8.3E-60 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RD1_RS16800 73f9d796e3d358c5249e13e646754332 416 TIGRFAM TIGR01266 fum_ac_acetase: fumarylacetoacetase 7 412 9.0E-149 T 23-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RD1_RS16800 73f9d796e3d358c5249e13e646754332 416 Gene3D G3DSA:2.30.30.230 7 120 1.7E-27 T 23-04-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RD1_RS16800 73f9d796e3d358c5249e13e646754332 416 PANTHER PTHR11820 118 413 5.1E-159 T 23-04-2016 RD1_RS16800 73f9d796e3d358c5249e13e646754332 416 PANTHER PTHR11820 2 91 5.1E-159 T 23-04-2016 RD1_RS16800 73f9d796e3d358c5249e13e646754332 416 Pfam PF09298 Fumarylacetoacetase N-terminal 22 118 1.4E-19 T 23-04-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RD1_RS16800 73f9d796e3d358c5249e13e646754332 416 PANTHER PTHR11820:SF1 118 413 5.1E-159 T 23-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RD1_RS16800 73f9d796e3d358c5249e13e646754332 416 PANTHER PTHR11820:SF1 2 91 5.1E-159 T 23-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RD1_RS16800 73f9d796e3d358c5249e13e646754332 416 Gene3D G3DSA:3.90.850.10 121 406 2.3E-104 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RD1_RS16800 73f9d796e3d358c5249e13e646754332 416 SUPERFAMILY SSF63433 6 118 1.44E-30 T 23-04-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RD1_RS16800 73f9d796e3d358c5249e13e646754332 416 SUPERFAMILY SSF56529 122 412 3.66E-96 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RD1_RS05975 f0affdc44e413383e7d775310f05ccee 471 Pfam PF01565 FAD binding domain 55 173 5.6E-25 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RD1_RS05975 f0affdc44e413383e7d775310f05ccee 471 Gene3D G3DSA:3.30.43.10 54 158 3.0E-21 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RD1_RS05975 f0affdc44e413383e7d775310f05ccee 471 SUPERFAMILY SSF56176 16 221 2.9E-36 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RD1_RS05975 f0affdc44e413383e7d775310f05ccee 471 PANTHER PTHR11748 11 241 3.3E-28 T 23-04-2016 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 SUPERFAMILY SSF55666 145 242 3.17E-26 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 Gene3D G3DSA:3.30.230.70 316 545 1.8E-86 T 23-04-2016 IPR027408 PNPase/RNase PH domain RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 Gene3D G3DSA:3.30.230.70 3 230 1.2E-82 T 23-04-2016 IPR027408 PNPase/RNase PH domain RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 Pfam PF00013 KH domain 559 616 2.4E-10 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 PIRSF PIRSF005499 1 711 7.2E-286 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 SUPERFAMILY SSF46915 245 324 1.41E-13 T 23-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 Pfam PF03725 3' exoribonuclease family, domain 2 147 217 9.0E-9 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 Pfam PF03725 3' exoribonuclease family, domain 2 462 532 9.1E-7 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 247 323 3.0E-12 T 23-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 SMART SM00316 623 693 3.6E-25 T 23-04-2016 IPR022967 RNA-binding domain, S1 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 Gene3D G3DSA:1.10.10.400 245 315 1.3E-17 T 23-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 SUPERFAMILY SSF55666 453 545 1.66E-26 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 SUPERFAMILY SSF50249 611 696 3.94E-22 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 SUPERFAMILY SSF54791 550 639 1.87E-18 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 SMART SM00322 555 620 2.4E-11 T 23-04-2016 IPR004087 K Homology domain GO:0003676 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 SUPERFAMILY SSF54211 301 492 2.78E-46 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 694 0.0 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 696 29.75 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 SUPERFAMILY SSF54211 2 144 2.63E-49 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 Pfam PF01138 3' exoribonuclease family, domain 1 326 459 2.7E-19 T 23-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 Pfam PF01138 3' exoribonuclease family, domain 1 16 144 2.7E-22 T 23-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 Pfam PF00575 S1 RNA binding domain 621 693 1.3E-19 T 23-04-2016 IPR003029 S1 domain GO:0003676 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 PANTHER PTHR11252 1 708 0.0 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 Gene3D G3DSA:2.40.50.140 622 698 4.7E-26 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 Gene3D G3DSA:3.30.1370.10 554 621 1.3E-23 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RD1_RS02930 c5f5a8b36717f363937d416f108d4687 711 PANTHER PTHR11252:SF0 1 708 0.0 T 23-04-2016 RD1_RS13620 4354f84e77fdd46270767be4d7d31ccc 248 Pfam PF00121 Triosephosphate isomerase 5 242 5.4E-77 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RD1_RS13620 4354f84e77fdd46270767be4d7d31ccc 248 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 245 37.332 T 23-04-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RD1_RS13620 4354f84e77fdd46270767be4d7d31ccc 248 PANTHER PTHR21139 1 245 1.9E-91 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RD1_RS13620 4354f84e77fdd46270767be4d7d31ccc 248 Gene3D G3DSA:3.20.20.70 1 246 2.1E-88 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS13620 4354f84e77fdd46270767be4d7d31ccc 248 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 7 235 6.1E-48 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RD1_RS13620 4354f84e77fdd46270767be4d7d31ccc 248 ProSitePatterns PS00171 Triosephosphate isomerase active site. 161 171 - T 23-04-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RD1_RS13620 4354f84e77fdd46270767be4d7d31ccc 248 SUPERFAMILY SSF51351 1 245 2.09E-83 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RD1_RS18170 b5d44e3a31d315c7c7ca8adeb1473319 382 Gene3D G3DSA:1.10.540.10 4 122 1.1E-35 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS18170 b5d44e3a31d315c7c7ca8adeb1473319 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 121 3.9E-32 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS18170 b5d44e3a31d315c7c7ca8adeb1473319 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 382 7.4E-43 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS18170 b5d44e3a31d315c7c7ca8adeb1473319 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 221 7.6E-25 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RD1_RS18170 b5d44e3a31d315c7c7ca8adeb1473319 382 SUPERFAMILY SSF47203 233 382 3.06E-48 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS18170 b5d44e3a31d315c7c7ca8adeb1473319 382 Gene3D G3DSA:2.40.110.10 124 220 3.3E-37 T 23-04-2016 RD1_RS18170 b5d44e3a31d315c7c7ca8adeb1473319 382 Gene3D G3DSA:1.20.140.10 221 382 5.4E-58 T 23-04-2016 RD1_RS18170 b5d44e3a31d315c7c7ca8adeb1473319 382 PIRSF PIRSF016578 2 382 4.6E-13 T 23-04-2016 RD1_RS18170 b5d44e3a31d315c7c7ca8adeb1473319 382 PANTHER PTHR10909:SF190 11 382 7.9E-179 T 23-04-2016 RD1_RS18170 b5d44e3a31d315c7c7ca8adeb1473319 382 PANTHER PTHR10909 11 382 7.9E-179 T 23-04-2016 RD1_RS18170 b5d44e3a31d315c7c7ca8adeb1473319 382 SUPERFAMILY SSF56645 5 246 2.09E-80 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RD1_RS18940 0457e125861d25ca11deaa9d6fe2b5c9 382 SUPERFAMILY SSF53187 302 380 1.23E-53 T 23-04-2016 RD1_RS18940 0457e125861d25ca11deaa9d6fe2b5c9 382 SUPERFAMILY SSF53187 5 176 1.23E-53 T 23-04-2016 RD1_RS18940 0457e125861d25ca11deaa9d6fe2b5c9 382 Gene3D G3DSA:3.40.630.10 321 381 1.2E-59 T 23-04-2016 RD1_RS18940 0457e125861d25ca11deaa9d6fe2b5c9 382 Gene3D G3DSA:3.40.630.10 6 185 1.2E-59 T 23-04-2016 RD1_RS18940 0457e125861d25ca11deaa9d6fe2b5c9 382 SUPERFAMILY SSF55031 177 288 6.41E-22 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS18940 0457e125861d25ca11deaa9d6fe2b5c9 382 Gene3D G3DSA:3.30.70.360 186 300 3.0E-23 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS18940 0457e125861d25ca11deaa9d6fe2b5c9 382 Pfam PF07687 Peptidase dimerisation domain 173 282 1.6E-20 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS18940 0457e125861d25ca11deaa9d6fe2b5c9 382 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 10 376 1.1E-103 T 23-04-2016 IPR010169 Acetylornithine deacetylase (ArgE) GO:0005737|GO:0006526|GO:0008270|GO:0008777|GO:0050897 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154|UniPathway: UPA00068 RD1_RS18940 0457e125861d25ca11deaa9d6fe2b5c9 382 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 103 140 - T 23-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RD1_RS18940 0457e125861d25ca11deaa9d6fe2b5c9 382 PANTHER PTHR11014 6 380 1.9E-68 T 23-04-2016 RD1_RS18940 0457e125861d25ca11deaa9d6fe2b5c9 382 Pfam PF01546 Peptidase family M20/M25/M40 69 378 2.9E-31 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 Gene3D G3DSA:3.40.50.300 283 445 1.2E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 PANTHER PTHR16305:SF28 72 808 2.8E-127 T 23-04-2016 RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 SUPERFAMILY SSF48452 775 976 5.22E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 Pfam PF12773 Double zinc ribbon 5 48 5.7E-8 T 23-04-2016 IPR025874 Double zinc ribbon RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 SMART SM00044 52 241 2.2E-13 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 SUPERFAMILY SSF55073 76 260 3.3E-51 T 23-04-2016 IPR029787 Nucleotide cyclase RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 Gene3D G3DSA:1.25.40.10 822 1084 6.0E-22 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 Gene3D G3DSA:1.25.40.10 702 810 4.7E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 PANTHER PTHR16305 72 808 2.8E-127 T 23-04-2016 RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 SUPERFAMILY SSF52540 402 543 2.25E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 SUPERFAMILY SSF52540 280 358 2.25E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 Gene3D G3DSA:3.30.70.1230 77 262 3.4E-40 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 80 255 5.9E-28 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 SMART SM00028 938 971 170.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 SMART SM00028 776 809 37.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 SMART SM00028 898 931 78.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 SMART SM00028 858 891 53.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 SMART SM00028 818 851 450.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS13475 cbe9456bb30d37341a9360865da5554c 1117 Pfam PF13191 AAA ATPase domain 281 467 7.0E-25 T 23-04-2016 RD1_RS14720 c9daea5796291e091aad74cc1ee4bbbe 681 Gene3D G3DSA:3.20.20.450 425 671 2.6E-79 T 23-04-2016 IPR001633 EAL domain RD1_RS14720 c9daea5796291e091aad74cc1ee4bbbe 681 PANTHER PTHR10799 1 68 3.9E-52 T 23-04-2016 RD1_RS14720 c9daea5796291e091aad74cc1ee4bbbe 681 PANTHER PTHR10799 281 518 3.9E-52 T 23-04-2016 RD1_RS14720 c9daea5796291e091aad74cc1ee4bbbe 681 SMART SM00267 237 409 7.3E-51 T 23-04-2016 IPR000160 GGDEF domain RD1_RS14720 c9daea5796291e091aad74cc1ee4bbbe 681 Pfam PF00563 EAL domain 426 660 3.1E-67 T 23-04-2016 IPR001633 EAL domain RD1_RS14720 c9daea5796291e091aad74cc1ee4bbbe 681 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 42 110 1.3E-8 T 23-04-2016 IPR029095 NarX-like, N-terminal RD1_RS14720 c9daea5796291e091aad74cc1ee4bbbe 681 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 246 406 1.6E-37 T 23-04-2016 IPR000160 GGDEF domain RD1_RS14720 c9daea5796291e091aad74cc1ee4bbbe 681 SUPERFAMILY SSF141868 425 673 3.27E-73 T 23-04-2016 IPR001633 EAL domain RD1_RS14720 c9daea5796291e091aad74cc1ee4bbbe 681 PANTHER PTHR10799:SF657 1 68 3.9E-52 T 23-04-2016 RD1_RS14720 c9daea5796291e091aad74cc1ee4bbbe 681 PANTHER PTHR10799:SF657 281 518 3.9E-52 T 23-04-2016 RD1_RS14720 c9daea5796291e091aad74cc1ee4bbbe 681 SUPERFAMILY SSF55073 253 410 2.75E-42 T 23-04-2016 IPR029787 Nucleotide cyclase RD1_RS14720 c9daea5796291e091aad74cc1ee4bbbe 681 Pfam PF00990 Diguanylate cyclase, GGDEF domain 248 405 1.6E-39 T 23-04-2016 IPR000160 GGDEF domain RD1_RS14720 c9daea5796291e091aad74cc1ee4bbbe 681 Gene3D G3DSA:3.30.70.270 249 416 3.1E-49 T 23-04-2016 RD1_RS14720 c9daea5796291e091aad74cc1ee4bbbe 681 SMART SM00052 419 665 3.6E-85 T 23-04-2016 IPR001633 EAL domain RD1_RS11975 b94cb25582ba1d2d71d138b71fc0b7e4 239 PANTHER PTHR26402:SF553 1 234 7.0E-108 T 23-04-2016 RD1_RS11975 b94cb25582ba1d2d71d138b71fc0b7e4 239 PANTHER PTHR26402 1 234 7.0E-108 T 23-04-2016 RD1_RS11975 b94cb25582ba1d2d71d138b71fc0b7e4 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 4.8E-20 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS11975 b94cb25582ba1d2d71d138b71fc0b7e4 239 Gene3D G3DSA:1.10.10.10 123 224 9.1E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11975 b94cb25582ba1d2d71d138b71fc0b7e4 239 SMART SM00448 1 112 9.7E-39 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS11975 b94cb25582ba1d2d71d138b71fc0b7e4 239 Pfam PF00072 Response regulator receiver domain 3 112 9.8E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS11975 b94cb25582ba1d2d71d138b71fc0b7e4 239 Gene3D G3DSA:3.40.50.2300 1 122 1.4E-35 T 23-04-2016 RD1_RS11975 b94cb25582ba1d2d71d138b71fc0b7e4 239 SMART SM00862 145 221 4.3E-19 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS11975 b94cb25582ba1d2d71d138b71fc0b7e4 239 SUPERFAMILY SSF52172 1 174 1.85E-39 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS17285 23bc71adc4638a5a574d7359af9104c1 127 TIGRFAM TIGR02425 decarb_PcaC: 4-carboxymuconolactone decarboxylase 2 122 2.1E-53 T 23-04-2016 IPR012788 4-carboxymuconolactone decarboxylase KEGG: 00362+4.1.1.44|UniPathway: UPA00157 RD1_RS17285 23bc71adc4638a5a574d7359af9104c1 127 SUPERFAMILY SSF69118 3 120 2.75E-29 T 23-04-2016 IPR029032 AhpD-like RD1_RS17285 23bc71adc4638a5a574d7359af9104c1 127 PANTHER PTHR33570:SF2 3 127 1.7E-37 T 23-04-2016 RD1_RS17285 23bc71adc4638a5a574d7359af9104c1 127 PANTHER PTHR33570 3 127 1.7E-37 T 23-04-2016 RD1_RS17285 23bc71adc4638a5a574d7359af9104c1 127 Pfam PF02627 Carboxymuconolactone decarboxylase family 35 116 5.6E-19 T 23-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RD1_RS17285 23bc71adc4638a5a574d7359af9104c1 127 Gene3D G3DSA:1.20.1290.10 6 123 1.6E-18 T 23-04-2016 IPR029032 AhpD-like RD1_RS14345 c8699911b81ce7c1eddcb163e1fafa9a 707 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 92 - T 23-04-2016 IPR010916 TonB box, conserved site RD1_RS14345 c8699911b81ce7c1eddcb163e1fafa9a 707 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 10 695 14.998 T 23-04-2016 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 RD1_RS14345 c8699911b81ce7c1eddcb163e1fafa9a 707 PANTHER PTHR30189 30 89 1.2E-23 T 23-04-2016 RD1_RS14345 c8699911b81ce7c1eddcb163e1fafa9a 707 PANTHER PTHR30189 114 672 1.2E-23 T 23-04-2016 RD1_RS14345 c8699911b81ce7c1eddcb163e1fafa9a 707 Gene3D G3DSA:2.60.450.10 27 112 8.9E-11 T 23-04-2016 RD1_RS14345 c8699911b81ce7c1eddcb163e1fafa9a 707 Gene3D G3DSA:2.60.450.10 146 181 8.9E-11 T 23-04-2016 RD1_RS14345 c8699911b81ce7c1eddcb163e1fafa9a 707 Pfam PF04453 Organic solvent tolerance protein 272 633 2.1E-40 T 23-04-2016 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 RD1_RS00190 35ea383e20ceb38d21884de9130fd199 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 4.6E-20 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS00190 35ea383e20ceb38d21884de9130fd199 228 PANTHER PTHR26402 5 226 7.7E-79 T 23-04-2016 RD1_RS00190 35ea383e20ceb38d21884de9130fd199 228 Gene3D G3DSA:1.10.10.10 128 227 7.5E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS00190 35ea383e20ceb38d21884de9130fd199 228 PANTHER PTHR26402:SF50 5 226 7.7E-79 T 23-04-2016 RD1_RS00190 35ea383e20ceb38d21884de9130fd199 228 SUPERFAMILY SSF52172 5 136 1.85E-37 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS00190 35ea383e20ceb38d21884de9130fd199 228 Gene3D G3DSA:3.40.50.2300 5 127 7.7E-35 T 23-04-2016 RD1_RS00190 35ea383e20ceb38d21884de9130fd199 228 SMART SM00862 151 226 8.8E-17 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS00190 35ea383e20ceb38d21884de9130fd199 228 Pfam PF00072 Response regulator receiver domain 7 117 1.5E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS00190 35ea383e20ceb38d21884de9130fd199 228 SUPERFAMILY SSF46894 126 227 1.42E-20 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RD1_RS00190 35ea383e20ceb38d21884de9130fd199 228 SMART SM00448 5 117 3.2E-38 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS12155 c2471c7da81b82256f999fc88eeea8e7 347 PANTHER PTHR24423 1 344 1.9E-93 T 23-04-2016 RD1_RS12155 c2471c7da81b82256f999fc88eeea8e7 347 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 225 343 3.6E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12155 c2471c7da81b82256f999fc88eeea8e7 347 Gene3D G3DSA:3.30.565.10 165 343 8.9E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12155 c2471c7da81b82256f999fc88eeea8e7 347 PANTHER PTHR24423:SF554 1 344 1.9E-93 T 23-04-2016 RD1_RS12155 c2471c7da81b82256f999fc88eeea8e7 347 Gene3D G3DSA:1.10.287.130 104 164 3.3E-22 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS12155 c2471c7da81b82256f999fc88eeea8e7 347 Pfam PF00512 His Kinase A (phospho-acceptor) domain 112 178 2.4E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS12155 c2471c7da81b82256f999fc88eeea8e7 347 SMART SM00388 112 179 1.6E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS12155 c2471c7da81b82256f999fc88eeea8e7 347 PRINTS PR00344 Bacterial sensor protein C-terminal signature 287 297 3.9E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12155 c2471c7da81b82256f999fc88eeea8e7 347 PRINTS PR00344 Bacterial sensor protein C-terminal signature 269 283 3.9E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12155 c2471c7da81b82256f999fc88eeea8e7 347 PRINTS PR00344 Bacterial sensor protein C-terminal signature 328 341 3.9E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12155 c2471c7da81b82256f999fc88eeea8e7 347 PRINTS PR00344 Bacterial sensor protein C-terminal signature 304 322 3.9E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS12155 c2471c7da81b82256f999fc88eeea8e7 347 SUPERFAMILY SSF55874 169 342 6.16E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12155 c2471c7da81b82256f999fc88eeea8e7 347 SMART SM00387 225 344 4.0E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS12155 c2471c7da81b82256f999fc88eeea8e7 347 Gene3D G3DSA:3.30.450.20 5 103 3.8E-5 T 23-04-2016 RD1_RS12155 c2471c7da81b82256f999fc88eeea8e7 347 SUPERFAMILY SSF47384 100 179 1.26E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS05300 7690051c2107b5ab68bd6dc0198ede31 297 Gene3D G3DSA:3.60.15.10 3 297 1.5E-93 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS05300 7690051c2107b5ab68bd6dc0198ede31 297 Pfam PF12706 Beta-lactamase superfamily domain 51 265 2.2E-44 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS05300 7690051c2107b5ab68bd6dc0198ede31 297 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 297 140.615 T 23-04-2016 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 UniPathway: UPA00539 RD1_RS05300 7690051c2107b5ab68bd6dc0198ede31 297 SUPERFAMILY SSF56281 4 296 1.45E-52 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS05300 7690051c2107b5ab68bd6dc0198ede31 297 TIGRFAM TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B 6 296 9.0E-115 T 23-04-2016 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 UniPathway: UPA00539 RD1_RS06375 4ee1a29c564dab10355fe1ffeb1a6c1e 138 SUPERFAMILY SSF53795 2 125 5.19E-20 T 23-04-2016 RD1_RS06375 4ee1a29c564dab10355fe1ffeb1a6c1e 138 Gene3D G3DSA:3.40.50.300 2 126 4.2E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06375 4ee1a29c564dab10355fe1ffeb1a6c1e 138 Pfam PF07475 HPr Serine kinase C-terminal domain 2 95 1.0E-19 T 23-04-2016 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 RD1_RS17640 92d30177f67ffea72601c9d41eea83a4 225 PANTHER PTHR30576:SF4 28 225 1.3E-82 T 23-04-2016 RD1_RS17640 92d30177f67ffea72601c9d41eea83a4 225 Pfam PF02397 Bacterial sugar transferase 30 220 2.6E-52 T 23-04-2016 IPR003362 Bacterial sugar transferase RD1_RS17640 92d30177f67ffea72601c9d41eea83a4 225 PANTHER PTHR30576 28 225 1.3E-82 T 23-04-2016 RD1_RS20065 7e0267662340f9a143bef670952df255 358 Gene3D G3DSA:3.30.1360.120 217 306 3.6E-29 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS20065 7e0267662340f9a143bef670952df255 358 Gene3D G3DSA:3.30.1360.120 58 130 3.6E-29 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS20065 7e0267662340f9a143bef670952df255 358 Pfam PF16350 FAD dependent oxidoreductase central domain 6 60 2.6E-16 T 23-04-2016 IPR032503 FAD dependent oxidoreductase, central domain RD1_RS20065 7e0267662340f9a143bef670952df255 358 Pfam PF01571 Aminomethyltransferase folate-binding domain 65 328 8.1E-55 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS20065 7e0267662340f9a143bef670952df255 358 Gene3D G3DSA:3.30.70.1400 131 205 2.3E-12 T 23-04-2016 RD1_RS20065 7e0267662340f9a143bef670952df255 358 SUPERFAMILY SSF103025 55 352 8.01E-77 T 23-04-2016 RD1_RS20065 7e0267662340f9a143bef670952df255 358 PIRSF PIRSF006487 32 358 3.9E-34 T 23-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS20065 7e0267662340f9a143bef670952df255 358 PANTHER PTHR13847:SF193 1 82 2.5E-16 T 23-04-2016 RD1_RS20065 7e0267662340f9a143bef670952df255 358 PANTHER PTHR13847 1 82 2.5E-16 T 23-04-2016 RD1_RS04635 1eaec8844ddc822f13624a1e88a910fd 103 SUPERFAMILY SSF158757 1 77 5.23E-35 T 23-04-2016 IPR023163 SMc04008-like domain RD1_RS04635 1eaec8844ddc822f13624a1e88a910fd 103 Pfam PF06844 Protein of unknown function (DUF1244) 28 93 4.2E-36 T 23-04-2016 IPR023163 SMc04008-like domain RD1_RS04635 1eaec8844ddc822f13624a1e88a910fd 103 Gene3D G3DSA:1.10.3340.10 1 85 4.8E-41 T 23-04-2016 IPR023163 SMc04008-like domain RD1_RS01520 fd54cd18e58f41931fbdaefc0275af71 413 PANTHER PTHR11360:SF115 4 247 3.9E-100 T 23-04-2016 RD1_RS01520 fd54cd18e58f41931fbdaefc0275af71 413 PANTHER PTHR11360:SF115 263 406 3.9E-100 T 23-04-2016 RD1_RS01520 fd54cd18e58f41931fbdaefc0275af71 413 PANTHER PTHR11360 263 406 3.9E-100 T 23-04-2016 RD1_RS01520 fd54cd18e58f41931fbdaefc0275af71 413 Pfam PF07690 Major Facilitator Superfamily 16 367 1.0E-35 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS01520 fd54cd18e58f41931fbdaefc0275af71 413 SUPERFAMILY SSF103473 5 404 8.63E-54 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS01520 fd54cd18e58f41931fbdaefc0275af71 413 PANTHER PTHR11360 4 247 3.9E-100 T 23-04-2016 RD1_RS01520 fd54cd18e58f41931fbdaefc0275af71 413 Gene3D G3DSA:1.20.1250.20 201 406 2.2E-16 T 23-04-2016 RD1_RS01520 fd54cd18e58f41931fbdaefc0275af71 413 Gene3D G3DSA:1.20.1250.20 11 186 3.0E-23 T 23-04-2016 RD1_RS18665 23bb555a975a3e201756599908b156a8 320 PANTHER PTHR11048 6 318 5.4E-102 T 23-04-2016 RD1_RS18665 23bb555a975a3e201756599908b156a8 320 PANTHER PTHR11048:SF28 6 318 5.4E-102 T 23-04-2016 RD1_RS18665 23bb555a975a3e201756599908b156a8 320 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 24 319 24.966 T 23-04-2016 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 UniPathway: UPA00232 RD1_RS18665 23bb555a975a3e201756599908b156a8 320 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 91 113 - T 23-04-2016 IPR030470 UbiA prenyltransferase conserved site RD1_RS18665 23bb555a975a3e201756599908b156a8 320 Pfam PF01040 UbiA prenyltransferase family 48 300 1.3E-53 T 23-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RD1_RS18665 23bb555a975a3e201756599908b156a8 320 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 30 318 1.2E-94 T 23-04-2016 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 UniPathway: UPA00232 RD1_RS00645 df145ff64d6a8025086c70453f1823e4 174 TIGRFAM TIGR02020 BchF: 2-vinyl bacteriochlorophyllide hydratase 14 155 3.1E-54 T 23-04-2016 IPR009905 2-vinyl bacteriochlorophyllide hydratase GO:0016836|GO:0019685|GO:0030494 KEGG: 00253+4.2.1.-|KEGG: 00300+4.2.1.-|KEGG: 00350+4.2.1.-|KEGG: 00362+4.2.1.-|KEGG: 00363+4.2.1.-|KEGG: 00400+4.2.1.-|KEGG: 00623+4.2.1.-|KEGG: 00626+4.2.1.-|KEGG: 00650+4.2.1.-|KEGG: 00860+4.2.1.-|KEGG: 00903+4.2.1.-|UniPathway: UPA00671 RD1_RS00645 df145ff64d6a8025086c70453f1823e4 174 Pfam PF07284 2-vinyl bacteriochlorophyllide hydratase (BCHF) 15 152 1.1E-59 T 23-04-2016 IPR009905 2-vinyl bacteriochlorophyllide hydratase GO:0016836|GO:0019685|GO:0030494 KEGG: 00253+4.2.1.-|KEGG: 00300+4.2.1.-|KEGG: 00350+4.2.1.-|KEGG: 00362+4.2.1.-|KEGG: 00363+4.2.1.-|KEGG: 00400+4.2.1.-|KEGG: 00623+4.2.1.-|KEGG: 00626+4.2.1.-|KEGG: 00650+4.2.1.-|KEGG: 00860+4.2.1.-|KEGG: 00903+4.2.1.-|UniPathway: UPA00671 RD1_RS05915 c4dad781e7d6896efc92aadb06515ad3 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 5.0E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05915 c4dad781e7d6896efc92aadb06515ad3 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 5.0E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05915 c4dad781e7d6896efc92aadb06515ad3 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 5.0E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05915 c4dad781e7d6896efc92aadb06515ad3 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 5.0E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05915 c4dad781e7d6896efc92aadb06515ad3 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.0E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05915 c4dad781e7d6896efc92aadb06515ad3 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 5.0E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05915 c4dad781e7d6896efc92aadb06515ad3 266 PANTHER PTHR24321 5 257 2.2E-38 T 23-04-2016 RD1_RS05915 c4dad781e7d6896efc92aadb06515ad3 266 PANTHER PTHR24321:SF6 5 257 2.2E-38 T 23-04-2016 RD1_RS05915 c4dad781e7d6896efc92aadb06515ad3 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 5.0E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05915 c4dad781e7d6896efc92aadb06515ad3 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 5.0E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05915 c4dad781e7d6896efc92aadb06515ad3 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 5.0E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05915 c4dad781e7d6896efc92aadb06515ad3 266 Gene3D G3DSA:3.40.50.720 1 257 4.7E-66 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05915 c4dad781e7d6896efc92aadb06515ad3 266 SUPERFAMILY SSF51735 7 257 5.75E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05915 c4dad781e7d6896efc92aadb06515ad3 266 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 254 4.7E-50 T 23-04-2016 RD1_RS08310 5a5b0618ed6973452d976a087d796b75 197 Pfam PF00677 Lumazine binding domain 98 182 8.1E-20 T 23-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS08310 5a5b0618ed6973452d976a087d796b75 197 Pfam PF00677 Lumazine binding domain 3 85 1.3E-20 T 23-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS08310 5a5b0618ed6973452d976a087d796b75 197 PIRSF PIRSF000498 1 197 1.7E-71 T 23-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS08310 5a5b0618ed6973452d976a087d796b75 197 SUPERFAMILY SSF63380 91 193 1.02E-31 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RD1_RS08310 5a5b0618ed6973452d976a087d796b75 197 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 191 2.2E-55 T 23-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS08310 5a5b0618ed6973452d976a087d796b75 197 PANTHER PTHR21098 1 194 6.8E-85 T 23-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS08310 5a5b0618ed6973452d976a087d796b75 197 Gene3D G3DSA:2.40.30.20 5 102 1.0E-30 T 23-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS08310 5a5b0618ed6973452d976a087d796b75 197 Gene3D G3DSA:2.40.30.20 103 193 1.3E-30 T 23-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS08310 5a5b0618ed6973452d976a087d796b75 197 SUPERFAMILY SSF63380 1 91 2.81E-24 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 SMART SM01007 27 229 2.7E-37 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 PANTHER PTHR24322:SF590 443 574 6.5E-45 T 23-04-2016 RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 PANTHER PTHR24322:SF590 590 621 6.5E-45 T 23-04-2016 RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 SUPERFAMILY SSF53639 24 236 1.92E-34 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 Gene3D G3DSA:3.40.225.10 25 237 1.3E-36 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 590 609 2.2E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 440 457 2.2E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 611 628 2.2E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 658 678 2.2E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 564 580 2.2E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 516 527 2.2E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 PANTHER PTHR24322 443 574 6.5E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 PANTHER PTHR24322 590 621 6.5E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 590 609 2.6E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 516 527 2.6E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 570 578 2.6E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 446 693 1.6E-49 T 23-04-2016 RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 TIGRFAM TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase 26 700 0.0 T 23-04-2016 IPR013454 Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 27 225 2.6E-23 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 SUPERFAMILY SSF51735 438 693 1.02E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS14170 076301c2aee2e016d0cf55b1c8621669 700 Gene3D G3DSA:3.40.50.720 427 694 5.0E-66 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS12760 4a30dd45cf9a582278b1df6cc09a22b9 287 SUPERFAMILY SSF103481 200 283 4.45E-10 T 23-04-2016 RD1_RS12760 4a30dd45cf9a582278b1df6cc09a22b9 287 SUPERFAMILY SSF103481 40 142 1.57E-13 T 23-04-2016 RD1_RS12760 4a30dd45cf9a582278b1df6cc09a22b9 287 PANTHER PTHR22911 1 286 4.0E-41 T 23-04-2016 RD1_RS12760 4a30dd45cf9a582278b1df6cc09a22b9 287 Pfam PF00892 EamA-like transporter family 6 138 6.9E-16 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS12760 4a30dd45cf9a582278b1df6cc09a22b9 287 Pfam PF00892 EamA-like transporter family 147 278 2.0E-9 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS03265 824380234d45062bfb1c84ea41838c42 234 SUPERFAMILY SSF53474 7 219 5.35E-17 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS03265 824380234d45062bfb1c84ea41838c42 234 Gene3D G3DSA:3.40.50.1820 18 212 1.7E-14 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08240 4ea35e773a5f922beb2c45f2b87ac2bc 477 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 94 108 9.4E-32 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 RD1_RS08240 4ea35e773a5f922beb2c45f2b87ac2bc 477 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 178 200 9.4E-32 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 RD1_RS08240 4ea35e773a5f922beb2c45f2b87ac2bc 477 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 357 368 9.4E-32 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 RD1_RS08240 4ea35e773a5f922beb2c45f2b87ac2bc 477 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 228 248 9.4E-32 T 23-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 RD1_RS08240 4ea35e773a5f922beb2c45f2b87ac2bc 477 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 42 167 1.9E-49 T 23-04-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 RD1_RS08240 4ea35e773a5f922beb2c45f2b87ac2bc 477 SUPERFAMILY SSF53223 12 189 6.08E-54 T 23-04-2016 RD1_RS08240 4ea35e773a5f922beb2c45f2b87ac2bc 477 Gene3D G3DSA:3.40.50.720 187 477 2.8E-89 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS08240 4ea35e773a5f922beb2c45f2b87ac2bc 477 PANTHER PTHR11606:SF13 18 477 1.7E-191 T 23-04-2016 RD1_RS08240 4ea35e773a5f922beb2c45f2b87ac2bc 477 SUPERFAMILY SSF51735 191 477 7.73E-70 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS08240 4ea35e773a5f922beb2c45f2b87ac2bc 477 PIRSF PIRSF000185 6 477 1.5E-143 T 23-04-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 RD1_RS08240 4ea35e773a5f922beb2c45f2b87ac2bc 477 SMART SM00839 189 476 7.0E-77 T 23-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 RD1_RS08240 4ea35e773a5f922beb2c45f2b87ac2bc 477 PANTHER PTHR11606 18 477 1.7E-191 T 23-04-2016 RD1_RS08240 4ea35e773a5f922beb2c45f2b87ac2bc 477 Gene3D G3DSA:3.40.192.10 48 185 1.1E-52 T 23-04-2016 RD1_RS08240 4ea35e773a5f922beb2c45f2b87ac2bc 477 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 187 379 6.4E-52 T 23-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 RD1_RS17260 80c9083e3d25aff42818e9ffa58fd4b4 323 Gene3D G3DSA:3.40.50.1820 63 181 2.7E-7 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS17260 80c9083e3d25aff42818e9ffa58fd4b4 323 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 52 285 5.4E-25 T 23-04-2016 IPR010297 Protein of unknown function DUF900, hydrolase-like RD1_RS14300 c6b1373015198e354f3054229cc9c433 140 SMART SM00562 3 140 5.1E-82 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS14300 c6b1373015198e354f3054229cc9c433 140 Gene3D G3DSA:3.30.70.141 1 139 3.2E-54 T 23-04-2016 RD1_RS14300 c6b1373015198e354f3054229cc9c433 140 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.255 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS14300 c6b1373015198e354f3054229cc9c433 140 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 23-04-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS14300 c6b1373015198e354f3054229cc9c433 140 Pfam PF00334 Nucleoside diphosphate kinase 4 137 8.0E-53 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS14300 c6b1373015198e354f3054229cc9c433 140 SUPERFAMILY SSF54919 1 139 2.62E-54 T 23-04-2016 RD1_RS14300 c6b1373015198e354f3054229cc9c433 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 8.5E-38 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS14300 c6b1373015198e354f3054229cc9c433 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 8.5E-38 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS14300 c6b1373015198e354f3054229cc9c433 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 8.5E-38 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS14300 c6b1373015198e354f3054229cc9c433 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 8.5E-38 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS14300 c6b1373015198e354f3054229cc9c433 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 8.5E-38 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS14300 c6b1373015198e354f3054229cc9c433 140 PANTHER PTHR11349 1 139 1.2E-65 T 23-04-2016 RD1_RS04335 534560ff1caf05ba0a6eaf6d012f1145 254 Gene3D G3DSA:3.20.20.190 14 232 1.5E-43 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RD1_RS04335 534560ff1caf05ba0a6eaf6d012f1145 254 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 26 239 1.1E-17 T 23-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RD1_RS04335 534560ff1caf05ba0a6eaf6d012f1145 254 SUPERFAMILY SSF51695 14 232 2.38E-46 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RD1_RS04335 534560ff1caf05ba0a6eaf6d012f1145 254 PANTHER PTHR23344 14 241 6.0E-35 T 23-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 RD1_RS04335 534560ff1caf05ba0a6eaf6d012f1145 254 PANTHER PTHR23344:SF20 14 241 6.0E-35 T 23-04-2016 RD1_RS14035 5cb8d8f74bc32c1a9f748b81127a1107 371 Pfam PF02541 Ppx/GppA phosphatase family 45 360 4.0E-45 T 23-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 RD1_RS14035 5cb8d8f74bc32c1a9f748b81127a1107 371 Gene3D G3DSA:3.30.420.40 26 148 1.9E-43 T 23-04-2016 RD1_RS14035 5cb8d8f74bc32c1a9f748b81127a1107 371 PANTHER PTHR30005 5 177 3.4E-67 T 23-04-2016 RD1_RS14035 5cb8d8f74bc32c1a9f748b81127a1107 371 PANTHER PTHR30005 206 371 3.4E-67 T 23-04-2016 RD1_RS14035 5cb8d8f74bc32c1a9f748b81127a1107 371 SUPERFAMILY SSF53067 31 151 8.2E-34 T 23-04-2016 RD1_RS14035 5cb8d8f74bc32c1a9f748b81127a1107 371 Gene3D G3DSA:3.30.420.150 155 362 1.1E-51 T 23-04-2016 RD1_RS14035 5cb8d8f74bc32c1a9f748b81127a1107 371 SUPERFAMILY SSF53067 155 177 1.21E-38 T 23-04-2016 RD1_RS14035 5cb8d8f74bc32c1a9f748b81127a1107 371 SUPERFAMILY SSF53067 206 361 1.21E-38 T 23-04-2016 RD1_RS06765 4fa8e2ef6a79e3ed02ffc5dd466a667d 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 9.0E-25 T 23-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06765 4fa8e2ef6a79e3ed02ffc5dd466a667d 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 42 4.0E-15 T 23-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06765 4fa8e2ef6a79e3ed02ffc5dd466a667d 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 23-04-2016 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06765 4fa8e2ef6a79e3ed02ffc5dd466a667d 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.553 T 23-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06765 4fa8e2ef6a79e3ed02ffc5dd466a667d 44 Pfam PF00468 Ribosomal protein L34 1 44 4.9E-24 T 23-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06765 4fa8e2ef6a79e3ed02ffc5dd466a667d 44 PANTHER PTHR14503 1 44 2.8E-21 T 23-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS04930 f1a91ad267133700ae74bd9ae3702218 520 SUPERFAMILY SSF48113 13 503 1.18E-121 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RD1_RS04930 f1a91ad267133700ae74bd9ae3702218 520 PANTHER PTHR11903 50 501 1.7E-51 T 23-04-2016 RD1_RS04930 f1a91ad267133700ae74bd9ae3702218 520 PRINTS PR00457 Animal haem peroxidase signature 413 433 6.7E-22 T 23-04-2016 IPR019791 Haem peroxidase, animal RD1_RS04930 f1a91ad267133700ae74bd9ae3702218 520 PRINTS PR00457 Animal haem peroxidase signature 258 284 6.7E-22 T 23-04-2016 IPR019791 Haem peroxidase, animal RD1_RS04930 f1a91ad267133700ae74bd9ae3702218 520 PRINTS PR00457 Animal haem peroxidase signature 215 233 6.7E-22 T 23-04-2016 IPR019791 Haem peroxidase, animal RD1_RS04930 f1a91ad267133700ae74bd9ae3702218 520 PRINTS PR00457 Animal haem peroxidase signature 311 321 6.7E-22 T 23-04-2016 IPR019791 Haem peroxidase, animal RD1_RS04930 f1a91ad267133700ae74bd9ae3702218 520 PRINTS PR00457 Animal haem peroxidase signature 65 76 6.7E-22 T 23-04-2016 IPR019791 Haem peroxidase, animal RD1_RS04930 f1a91ad267133700ae74bd9ae3702218 520 PRINTS PR00457 Animal haem peroxidase signature 233 253 6.7E-22 T 23-04-2016 IPR019791 Haem peroxidase, animal RD1_RS04930 f1a91ad267133700ae74bd9ae3702218 520 Pfam PF03098 Animal haem peroxidase 125 502 2.2E-39 T 23-04-2016 IPR019791 Haem peroxidase, animal RD1_RS04930 f1a91ad267133700ae74bd9ae3702218 520 Gene3D G3DSA:1.10.640.10 23 502 7.6E-75 T 23-04-2016 IPR019791 Haem peroxidase, animal RD1_RS05075 c8c24f3f68e72165fd0a5a87baf4039c 565 Gene3D G3DSA:2.30.38.10 382 455 3.3E-28 T 23-04-2016 RD1_RS05075 c8c24f3f68e72165fd0a5a87baf4039c 565 SUPERFAMILY SSF56801 21 559 6.02E-158 T 23-04-2016 RD1_RS05075 c8c24f3f68e72165fd0a5a87baf4039c 565 Pfam PF13193 AMP-binding enzyme C-terminal domain 473 548 3.0E-16 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RD1_RS05075 c8c24f3f68e72165fd0a5a87baf4039c 565 PANTHER PTHR24095 19 564 2.5E-192 T 23-04-2016 RD1_RS05075 c8c24f3f68e72165fd0a5a87baf4039c 565 Gene3D G3DSA:3.40.50.980 27 228 5.2E-40 T 23-04-2016 RD1_RS05075 c8c24f3f68e72165fd0a5a87baf4039c 565 ProSitePatterns PS00455 Putative AMP-binding domain signature. 214 225 - T 23-04-2016 IPR020845 AMP-binding, conserved site RD1_RS05075 c8c24f3f68e72165fd0a5a87baf4039c 565 Pfam PF00501 AMP-binding enzyme 33 463 2.2E-110 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RD1_RS05075 c8c24f3f68e72165fd0a5a87baf4039c 565 Gene3D G3DSA:3.30.300.30 461 560 2.4E-30 T 23-04-2016 RD1_RS05075 c8c24f3f68e72165fd0a5a87baf4039c 565 Gene3D G3DSA:3.40.50.980 229 374 2.7E-51 T 23-04-2016 RD1_RS06200 c6fc3a7b4e5a41247ae20ce3bc467c02 230 PANTHER PTHR30328 1 176 1.5E-14 T 23-04-2016 RD1_RS06200 c6fc3a7b4e5a41247ae20ce3bc467c02 230 SUPERFAMILY SSF46689 23 90 8.98E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS06200 c6fc3a7b4e5a41247ae20ce3bc467c02 230 PANTHER PTHR30328:SF27 1 176 1.5E-14 T 23-04-2016 RD1_RS06200 c6fc3a7b4e5a41247ae20ce3bc467c02 230 Gene3D G3DSA:1.10.357.10 25 176 1.1E-21 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RD1_RS06200 c6fc3a7b4e5a41247ae20ce3bc467c02 230 Pfam PF00440 Bacterial regulatory proteins, tetR family 31 75 1.8E-9 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS00010 404718a291c91b14dcb208b98f74a9f1 382 Gene3D G3DSA:2.40.30.110 294 361 3.3E-12 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS00010 404718a291c91b14dcb208b98f74a9f1 382 Gene3D G3DSA:3.30.70.1400 61 129 3.3E-18 T 23-04-2016 RD1_RS00010 404718a291c91b14dcb208b98f74a9f1 382 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 280 365 1.7E-9 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS00010 404718a291c91b14dcb208b98f74a9f1 382 SUPERFAMILY SSF101790 294 375 2.62E-14 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RD1_RS00010 404718a291c91b14dcb208b98f74a9f1 382 SUPERFAMILY SSF103025 5 284 3.53E-65 T 23-04-2016 RD1_RS00010 404718a291c91b14dcb208b98f74a9f1 382 Gene3D G3DSA:3.30.1360.120 6 60 7.3E-33 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS00010 404718a291c91b14dcb208b98f74a9f1 382 Gene3D G3DSA:3.30.1360.120 144 236 7.3E-33 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS00010 404718a291c91b14dcb208b98f74a9f1 382 PIRSF PIRSF006487 1 381 1.3E-92 T 23-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS00010 404718a291c91b14dcb208b98f74a9f1 382 Pfam PF01571 Aminomethyltransferase folate-binding domain 11 255 9.4E-58 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS02510 2d45b7bfe0a491e1c28983b1df514a78 326 PANTHER PTHR30482 2 324 2.8E-77 T 23-04-2016 RD1_RS02510 2d45b7bfe0a491e1c28983b1df514a78 326 PANTHER PTHR30482:SF2 2 324 2.8E-77 T 23-04-2016 RD1_RS02510 2d45b7bfe0a491e1c28983b1df514a78 326 Pfam PF02653 Branched-chain amino acid transport system / permease component 30 307 5.6E-35 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS08215 a3074620ce854af82230881ffc6107dc 447 SMART SM00564 297 328 8.5E-6 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RD1_RS08215 a3074620ce854af82230881ffc6107dc 447 SMART SM00564 335 366 760.0 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RD1_RS08215 a3074620ce854af82230881ffc6107dc 447 SMART SM00564 386 418 0.56 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RD1_RS08215 a3074620ce854af82230881ffc6107dc 447 SMART SM00564 115 145 120.0 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RD1_RS08215 a3074620ce854af82230881ffc6107dc 447 SMART SM00564 201 232 2.5 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RD1_RS08215 a3074620ce854af82230881ffc6107dc 447 SMART SM00564 160 192 0.048 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RD1_RS08215 a3074620ce854af82230881ffc6107dc 447 Pfam PF13570 PQQ-like domain 383 410 9.6E-4 T 23-04-2016 IPR025666 Pyrrolo-quinoline quinone-like domain RD1_RS08215 a3074620ce854af82230881ffc6107dc 447 Pfam PF13570 PQQ-like domain 417 446 3.1E-6 T 23-04-2016 IPR025666 Pyrrolo-quinoline quinone-like domain RD1_RS08215 a3074620ce854af82230881ffc6107dc 447 PANTHER PTHR32303 34 332 4.1E-13 T 23-04-2016 RD1_RS08215 a3074620ce854af82230881ffc6107dc 447 PANTHER PTHR32303 353 421 4.1E-13 T 23-04-2016 RD1_RS08215 a3074620ce854af82230881ffc6107dc 447 SUPERFAMILY SSF50998 63 441 2.83E-70 T 23-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RD1_RS08215 a3074620ce854af82230881ffc6107dc 447 Pfam PF13360 PQQ-like domain 129 363 1.3E-48 T 23-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RD1_RS08215 a3074620ce854af82230881ffc6107dc 447 Gene3D G3DSA:2.140.10.10 14 26 1.7E-67 T 23-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RD1_RS08215 a3074620ce854af82230881ffc6107dc 447 Gene3D G3DSA:2.140.10.10 65 446 1.7E-67 T 23-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RD1_RS06105 9cb2dc54eef6085ca5c0db45d9db960e 74 Pfam PF00137 ATP synthase subunit C 8 70 8.2E-11 T 23-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RD1_RS06105 9cb2dc54eef6085ca5c0db45d9db960e 74 PANTHER PTHR10031 8 74 4.7E-12 T 23-04-2016 RD1_RS06105 9cb2dc54eef6085ca5c0db45d9db960e 74 Hamap MF_01396 ATP synthase subunit c [atpH]. 6 73 14.072 T 23-04-2016 RD1_RS06105 9cb2dc54eef6085ca5c0db45d9db960e 74 Gene3D G3DSA:1.20.20.10 7 72 8.2E-18 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RD1_RS06105 9cb2dc54eef6085ca5c0db45d9db960e 74 SUPERFAMILY SSF81333 5 73 4.84E-16 T 23-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RD1_RS06105 9cb2dc54eef6085ca5c0db45d9db960e 74 PRINTS PR00124 ATP synthase C subunit signature 46 71 9.3E-21 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RD1_RS06105 9cb2dc54eef6085ca5c0db45d9db960e 74 PRINTS PR00124 ATP synthase C subunit signature 8 27 9.3E-21 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RD1_RS06105 9cb2dc54eef6085ca5c0db45d9db960e 74 PRINTS PR00124 ATP synthase C subunit signature 29 44 9.3E-21 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RD1_RS00730 72fe6bab13039bf785d2d8e0cd2514fb 262 SUPERFAMILY SSF158837 8 245 9.29E-71 T 23-04-2016 IPR023157 AGR-C-984p-like domain RD1_RS00730 72fe6bab13039bf785d2d8e0cd2514fb 262 Gene3D G3DSA:1.10.3700.10 2 243 9.7E-68 T 23-04-2016 IPR023157 AGR-C-984p-like domain RD1_RS00730 72fe6bab13039bf785d2d8e0cd2514fb 262 Pfam PF06748 Protein of unknown function (DUF1217) 67 212 9.5E-40 T 23-04-2016 IPR010626 Protein of unknown function DUF1217 RD1_RS11105 547d7e59d6013b56e4e8a0a953ed087b 349 Gene3D G3DSA:3.40.190.10 136 272 1.0E-16 T 23-04-2016 RD1_RS11105 547d7e59d6013b56e4e8a0a953ed087b 349 Gene3D G3DSA:3.40.190.10 7 130 3.5E-8 T 23-04-2016 RD1_RS11105 547d7e59d6013b56e4e8a0a953ed087b 349 Gene3D G3DSA:3.40.190.10 273 316 3.5E-8 T 23-04-2016 RD1_RS11105 547d7e59d6013b56e4e8a0a953ed087b 349 PANTHER PTHR30006 12 347 3.0E-22 T 23-04-2016 RD1_RS11105 547d7e59d6013b56e4e8a0a953ed087b 349 Pfam PF13343 Bacterial extracellular solute-binding protein 80 331 4.4E-14 T 23-04-2016 RD1_RS11105 547d7e59d6013b56e4e8a0a953ed087b 349 SUPERFAMILY SSF53850 50 346 2.96E-37 T 23-04-2016 RD1_RS08480 8f56caea5fd3acb2411cd08ecdbe4bea 364 PANTHER PTHR10314:SF105 26 346 9.0E-98 T 23-04-2016 RD1_RS08480 8f56caea5fd3acb2411cd08ecdbe4bea 364 PANTHER PTHR10314 26 346 9.0E-98 T 23-04-2016 RD1_RS08480 8f56caea5fd3acb2411cd08ecdbe4bea 364 PIRSF PIRSF006278 20 363 3.9E-114 T 23-04-2016 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase RD1_RS08480 8f56caea5fd3acb2411cd08ecdbe4bea 364 TIGRFAM TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 37 355 3.9E-97 T 23-04-2016 IPR005966 D-cysteine desulfhydrase GO:0003824 KEGG: 00270+4.4.1.15 RD1_RS08480 8f56caea5fd3acb2411cd08ecdbe4bea 364 Gene3D G3DSA:3.40.50.1100 146 357 8.4E-66 T 23-04-2016 RD1_RS08480 8f56caea5fd3acb2411cd08ecdbe4bea 364 SUPERFAMILY SSF53686 31 356 2.74E-88 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS08480 8f56caea5fd3acb2411cd08ecdbe4bea 364 Gene3D G3DSA:3.40.50.1100 45 145 1.2E-5 T 23-04-2016 RD1_RS08480 8f56caea5fd3acb2411cd08ecdbe4bea 364 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 36 345 3.3E-57 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS08665 6d6cd0ef5f3cfdcb17244f540af34103 277 Hamap MF_00008 Thymidylate synthase [thyA]. 1 277 43.876 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RD1_RS08665 6d6cd0ef5f3cfdcb17244f540af34103 277 Pfam PF00303 Thymidylate synthase 2 277 3.0E-117 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RD1_RS08665 6d6cd0ef5f3cfdcb17244f540af34103 277 SUPERFAMILY SSF55831 2 277 1.31E-123 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RD1_RS08665 6d6cd0ef5f3cfdcb17244f540af34103 277 Gene3D G3DSA:3.30.572.10 2 277 8.4E-126 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RD1_RS08665 6d6cd0ef5f3cfdcb17244f540af34103 277 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 2.6E-38 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RD1_RS08665 6d6cd0ef5f3cfdcb17244f540af34103 277 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 277 5.6E-83 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RD1_RS08665 6d6cd0ef5f3cfdcb17244f540af34103 277 PRINTS PR00108 Thymidylate synthase family signature 154 169 1.5E-46 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RD1_RS08665 6d6cd0ef5f3cfdcb17244f540af34103 277 PRINTS PR00108 Thymidylate synthase family signature 42 63 1.5E-46 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RD1_RS08665 6d6cd0ef5f3cfdcb17244f540af34103 277 PRINTS PR00108 Thymidylate synthase family signature 128 147 1.5E-46 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RD1_RS08665 6d6cd0ef5f3cfdcb17244f540af34103 277 PRINTS PR00108 Thymidylate synthase family signature 172 198 1.5E-46 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RD1_RS08665 6d6cd0ef5f3cfdcb17244f540af34103 277 PRINTS PR00108 Thymidylate synthase family signature 210 227 1.5E-46 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RD1_RS08665 6d6cd0ef5f3cfdcb17244f540af34103 277 PANTHER PTHR11548 2 277 1.3E-178 T 23-04-2016 RD1_RS19075 915d9f0b5c5ea04f88beb9af3ac0820c 555 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 310 538 2.7E-93 T 23-04-2016 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 RD1_RS19075 915d9f0b5c5ea04f88beb9af3ac0820c 555 Gene3D G3DSA:3.40.50.300 289 510 1.7E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS19075 915d9f0b5c5ea04f88beb9af3ac0820c 555 SMART SM00382 31 212 1.6E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS19075 915d9f0b5c5ea04f88beb9af3ac0820c 555 SMART SM00382 318 500 1.4E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS19075 915d9f0b5c5ea04f88beb9af3ac0820c 555 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS19075 915d9f0b5c5ea04f88beb9af3ac0820c 555 Pfam PF00005 ABC transporter 310 450 3.9E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS19075 915d9f0b5c5ea04f88beb9af3ac0820c 555 Pfam PF00005 ABC transporter 22 163 8.4E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS19075 915d9f0b5c5ea04f88beb9af3ac0820c 555 SUPERFAMILY SSF52540 290 514 1.0E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS19075 915d9f0b5c5ea04f88beb9af3ac0820c 555 PANTHER PTHR24220:SF457 291 543 8.7E-115 T 23-04-2016 RD1_RS19075 915d9f0b5c5ea04f88beb9af3ac0820c 555 PANTHER PTHR24220 291 543 8.7E-115 T 23-04-2016 RD1_RS19075 915d9f0b5c5ea04f88beb9af3ac0820c 555 SUPERFAMILY SSF52540 6 215 4.69E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS19075 915d9f0b5c5ea04f88beb9af3ac0820c 555 Gene3D G3DSA:3.40.50.300 5 210 1.3E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13840 b1e6d94866b63dc90ac85613adbe02b7 336 SUPERFAMILY SSF52518 8 331 7.12E-110 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS13840 b1e6d94866b63dc90ac85613adbe02b7 336 Gene3D G3DSA:3.40.50.970 7 333 1.0E-143 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS13840 b1e6d94866b63dc90ac85613adbe02b7 336 Pfam PF00676 Dehydrogenase E1 component 23 320 8.2E-107 T 23-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 RD1_RS13840 b1e6d94866b63dc90ac85613adbe02b7 336 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 15 329 4.2E-156 T 23-04-2016 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RD1_RS13840 b1e6d94866b63dc90ac85613adbe02b7 336 PANTHER PTHR11516 12 336 2.4E-183 T 23-04-2016 RD1_RS13840 b1e6d94866b63dc90ac85613adbe02b7 336 PANTHER PTHR11516:SF40 12 336 2.4E-183 T 23-04-2016 RD1_RS12980 e15f8c78dce3e12fcb8deea180c2765b 451 PANTHER PTHR22726:SF10 37 320 1.6E-29 T 23-04-2016 RD1_RS12980 e15f8c78dce3e12fcb8deea180c2765b 451 PANTHER PTHR22726 37 320 1.6E-29 T 23-04-2016 RD1_RS12980 e15f8c78dce3e12fcb8deea180c2765b 451 SUPERFAMILY SSF48452 280 429 5.18E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS12980 e15f8c78dce3e12fcb8deea180c2765b 451 Gene3D G3DSA:1.25.40.10 275 435 4.0E-22 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS12980 e15f8c78dce3e12fcb8deea180c2765b 451 Pfam PF01435 Peptidase family M48 47 231 2.9E-25 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RD1_RS12980 e15f8c78dce3e12fcb8deea180c2765b 451 Pfam PF14559 Tetratricopeptide repeat 323 373 4.3E-6 T 23-04-2016 RD1_RS12980 e15f8c78dce3e12fcb8deea180c2765b 451 Gene3D G3DSA:3.30.2010.10 40 121 3.4E-16 T 23-04-2016 RD1_RS12980 e15f8c78dce3e12fcb8deea180c2765b 451 SMART SM00028 312 345 0.33 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS12980 e15f8c78dce3e12fcb8deea180c2765b 451 SMART SM00028 278 311 19.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS08300 580572baf17c679682bf6ee83f8505ac 155 PANTHER PTHR30455 2 155 5.4E-57 T 23-04-2016 RD1_RS08300 580572baf17c679682bf6ee83f8505ac 155 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 82.367 T 23-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 RD1_RS08300 580572baf17c679682bf6ee83f8505ac 155 PANTHER PTHR30455:SF2 2 155 5.4E-57 T 23-04-2016 RD1_RS08300 580572baf17c679682bf6ee83f8505ac 155 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 145 2.9E-48 T 23-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 RD1_RS08300 580572baf17c679682bf6ee83f8505ac 155 Pfam PF03477 ATP cone domain 50 135 2.2E-16 T 23-04-2016 IPR005144 ATP-cone domain RD1_RS02685 64e14677c8f62c75668ef304f62d0274 481 PANTHER PTHR30033:SF1 1 327 1.4E-48 T 23-04-2016 RD1_RS02685 64e14677c8f62c75668ef304f62d0274 481 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 6 480 2.3E-62 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RD1_RS02685 64e14677c8f62c75668ef304f62d0274 481 PANTHER PTHR30033 1 327 1.4E-48 T 23-04-2016 RD1_RS02685 64e14677c8f62c75668ef304f62d0274 481 SUPERFAMILY SSF64518 126 480 8.24E-16 T 23-04-2016 RD1_RS02685 64e14677c8f62c75668ef304f62d0274 481 Pfam PF00460 Flagella basal body rod protein 7 36 2.5E-5 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RD1_RS02685 64e14677c8f62c75668ef304f62d0274 481 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 432 480 1.4E-8 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RD1_RS13335 c8f4256264a10b33faf36288fbba13f7 198 PRINTS PR00354 7Fe ferredoxin signature 66 76 8.6E-6 T 23-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RD1_RS13335 c8f4256264a10b33faf36288fbba13f7 198 PRINTS PR00354 7Fe ferredoxin signature 83 100 8.6E-6 T 23-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RD1_RS13335 c8f4256264a10b33faf36288fbba13f7 198 PRINTS PR00354 7Fe ferredoxin signature 56 66 8.6E-6 T 23-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RD1_RS13335 c8f4256264a10b33faf36288fbba13f7 198 PANTHER PTHR11938 3 124 6.6E-93 T 23-04-2016 RD1_RS13335 c8f4256264a10b33faf36288fbba13f7 198 PANTHER PTHR11938 142 178 6.6E-93 T 23-04-2016 RD1_RS13335 c8f4256264a10b33faf36288fbba13f7 198 Pfam PF00037 4Fe-4S binding domain 9 25 9.7E-5 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS13335 c8f4256264a10b33faf36288fbba13f7 198 SUPERFAMILY SSF54862 4 181 1.67E-49 T 23-04-2016 RD1_RS13335 c8f4256264a10b33faf36288fbba13f7 198 Pfam PF13247 4Fe-4S dicluster domain 53 165 1.3E-11 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS13335 c8f4256264a10b33faf36288fbba13f7 198 PANTHER PTHR11938:SF96 3 124 6.6E-93 T 23-04-2016 RD1_RS13335 c8f4256264a10b33faf36288fbba13f7 198 PANTHER PTHR11938:SF96 142 178 6.6E-93 T 23-04-2016 RD1_RS13335 c8f4256264a10b33faf36288fbba13f7 198 Gene3D G3DSA:3.30.70.20 64 119 1.7E-21 T 23-04-2016 RD1_RS13335 c8f4256264a10b33faf36288fbba13f7 198 Gene3D G3DSA:3.30.70.20 120 169 1.2E-22 T 23-04-2016 RD1_RS13335 c8f4256264a10b33faf36288fbba13f7 198 Gene3D G3DSA:3.30.70.20 5 63 1.2E-22 T 23-04-2016 RD1_RS13335 c8f4256264a10b33faf36288fbba13f7 198 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 88 99 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS04865 d161b70f6ade83fae5a3609f078887b7 263 Pfam PF00005 ABC transporter 18 174 1.6E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS04865 d161b70f6ade83fae5a3609f078887b7 263 PANTHER PTHR24220 3 245 1.2E-91 T 23-04-2016 RD1_RS04865 d161b70f6ade83fae5a3609f078887b7 263 Gene3D G3DSA:3.40.50.300 1 235 4.2E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04865 d161b70f6ade83fae5a3609f078887b7 263 SUPERFAMILY SSF52540 1 236 3.47E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04865 d161b70f6ade83fae5a3609f078887b7 263 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 1 243 4.0E-97 T 23-04-2016 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 RD1_RS04865 d161b70f6ade83fae5a3609f078887b7 263 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS04865 d161b70f6ade83fae5a3609f078887b7 263 PANTHER PTHR24220:SF408 3 245 1.2E-91 T 23-04-2016 RD1_RS04865 d161b70f6ade83fae5a3609f078887b7 263 SMART SM00382 27 231 2.5E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS09825 c3def0a5faff64bc4f54fa207b9ca137 275 Pfam PF01464 Transglycosylase SLT domain 134 228 3.5E-25 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 RD1_RS09825 c3def0a5faff64bc4f54fa207b9ca137 275 SUPERFAMILY SSF53955 116 251 4.3E-43 T 23-04-2016 IPR023346 Lysozyme-like domain RD1_RS09825 c3def0a5faff64bc4f54fa207b9ca137 275 PANTHER PTHR21666 103 249 2.1E-31 T 23-04-2016 RD1_RS09825 c3def0a5faff64bc4f54fa207b9ca137 275 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 149 177 - T 23-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 RD1_RS09825 c3def0a5faff64bc4f54fa207b9ca137 275 Gene3D G3DSA:1.10.530.10 131 259 5.0E-43 T 23-04-2016 RD1_RS18075 e7b253f313cde6d0bd01c8cacbebdbe3 176 Gene3D G3DSA:3.10.450.50 21 163 4.0E-40 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS18075 e7b253f313cde6d0bd01c8cacbebdbe3 176 SUPERFAMILY SSF54427 21 156 6.98E-36 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS18075 e7b253f313cde6d0bd01c8cacbebdbe3 176 Pfam PF07366 SnoaL-like polyketide cyclase 26 151 8.5E-21 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 Gene3D G3DSA:3.30.460.10 185 332 3.1E-46 T 23-04-2016 RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 Pfam PF13291 ACT domain 630 705 1.8E-14 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 PANTHER PTHR21262:SF0 1 708 6.2E-270 T 23-04-2016 RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 SUPERFAMILY SSF81271 382 454 8.28E-19 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 SUPERFAMILY SSF81301 188 399 2.29E-57 T 23-04-2016 RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 SMART SM00471 48 160 8.6E-9 T 23-04-2016 IPR003607 HD/PDEase domain RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 33 704 3.2E-202 T 23-04-2016 IPR004811 RelA/SpoT family GO:0015969 RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 SUPERFAMILY SSF109604 11 198 5.65E-67 T 23-04-2016 RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 Gene3D G3DSA:3.30.70.260 631 699 6.6E-6 T 23-04-2016 RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 Pfam PF13328 HD domain 33 182 1.1E-48 T 23-04-2016 IPR003607 HD/PDEase domain RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 PANTHER PTHR21262 1 708 6.2E-270 T 23-04-2016 RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 Pfam PF04607 Region found in RelA / SpoT proteins 242 350 2.3E-38 T 23-04-2016 IPR007685 RelA/SpoT GO:0015969 RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 Pfam PF02824 TGS domain 396 454 2.9E-18 T 23-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 Gene3D G3DSA:3.10.20.30 394 456 9.1E-21 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 SUPERFAMILY SSF55021 632 705 4.58E-6 T 23-04-2016 RD1_RS06280 294a11f56ebc0699e949fa26ddc253a5 718 SMART SM00954 242 352 3.5E-62 T 23-04-2016 IPR007685 RelA/SpoT GO:0015969 RD1_RS11610 9a62f77f4bb200db7e22b0718ea52e85 489 Gene3D G3DSA:1.10.1040.10 186 254 1.2E-8 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS11610 9a62f77f4bb200db7e22b0718ea52e85 489 Gene3D G3DSA:3.10.129.10 337 470 1.2E-45 T 23-04-2016 IPR029069 HotDog domain RD1_RS11610 9a62f77f4bb200db7e22b0718ea52e85 489 SUPERFAMILY SSF48179 185 260 1.47E-11 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS11610 9a62f77f4bb200db7e22b0718ea52e85 489 SUPERFAMILY SSF51735 4 180 1.53E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11610 9a62f77f4bb200db7e22b0718ea52e85 489 Pfam PF13279 Thioesterase-like superfamily 347 462 5.1E-14 T 23-04-2016 RD1_RS11610 9a62f77f4bb200db7e22b0718ea52e85 489 PANTHER PTHR23309 6 440 1.1E-70 T 23-04-2016 RD1_RS11610 9a62f77f4bb200db7e22b0718ea52e85 489 PANTHER PTHR23309:SF17 6 440 1.1E-70 T 23-04-2016 RD1_RS11610 9a62f77f4bb200db7e22b0718ea52e85 489 Hamap MF_02129 L-carnitine dehydrogenase [lcdH]. 3 314 54.055 T 23-04-2016 IPR026578 L-carnitine dehydrogenase KEGG: 00040+1.1.1.10|MetaCyc: PWY-3602|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7472|UniPathway: UPA00117 RD1_RS11610 9a62f77f4bb200db7e22b0718ea52e85 489 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5 178 1.8E-38 T 23-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RD1_RS11610 9a62f77f4bb200db7e22b0718ea52e85 489 Gene3D G3DSA:3.40.50.720 3 185 4.8E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11610 9a62f77f4bb200db7e22b0718ea52e85 489 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 185 251 3.2E-12 T 23-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RD1_RS11610 9a62f77f4bb200db7e22b0718ea52e85 489 SUPERFAMILY SSF54637 338 484 1.47E-40 T 23-04-2016 IPR029069 HotDog domain RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 Gene3D G3DSA:1.10.287.130 221 276 2.9E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 383 1.7E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 441 1.7E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 397 1.7E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 422 1.7E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 Pfam PF00512 His Kinase A (phospho-acceptor) domain 215 279 6.2E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 SMART SM00448 460 569 4.2E-7 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 SMART SM00448 616 731 1.6E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 Gene3D G3DSA:3.40.50.2300 613 733 7.1E-37 T 23-04-2016 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 SMART SM00387 327 444 1.9E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 PANTHER PTHR24423 77 447 7.5E-148 T 23-04-2016 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 PANTHER PTHR24423 4 20 7.5E-148 T 23-04-2016 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 PANTHER PTHR24423 538 734 7.5E-148 T 23-04-2016 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 Gene3D G3DSA:3.40.50.2300 460 567 3.3E-17 T 23-04-2016 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 327 442 7.5E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 SUPERFAMILY SSF52172 461 545 9.39E-17 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 SUPERFAMILY SSF52172 614 733 1.71E-31 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 SUPERFAMILY SSF55874 269 442 1.83E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 SMART SM00388 215 280 2.7E-23 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 SUPERFAMILY SSF47384 201 281 1.45E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 Pfam PF12860 PAS fold 85 200 3.5E-9 T 23-04-2016 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 Pfam PF00072 Response regulator receiver domain 462 540 7.6E-12 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 Pfam PF00072 Response regulator receiver domain 618 731 1.0E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 Gene3D G3DSA:3.30.450.20 185 220 2.3E-4 T 23-04-2016 RD1_RS01670 94319d85170050522f17e2b95726d1f2 752 Gene3D G3DSA:3.30.565.10 281 444 1.1E-46 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS02690 057b08388ee2815fa3858a3930e037ae 436 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 23-04-2016 IPR019776 Flagellar basal body rod protein, conserved site RD1_RS02690 057b08388ee2815fa3858a3930e037ae 436 PANTHER PTHR30435:SF1 1 133 3.4E-44 T 23-04-2016 RD1_RS02690 057b08388ee2815fa3858a3930e037ae 436 PANTHER PTHR30435:SF1 313 436 3.4E-44 T 23-04-2016 RD1_RS02690 057b08388ee2815fa3858a3930e037ae 436 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 380 433 2.1E-14 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RD1_RS02690 057b08388ee2815fa3858a3930e037ae 436 Pfam PF00460 Flagella basal body rod protein 7 37 4.2E-6 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RD1_RS02690 057b08388ee2815fa3858a3930e037ae 436 PANTHER PTHR30435 1 133 3.4E-44 T 23-04-2016 RD1_RS02690 057b08388ee2815fa3858a3930e037ae 436 PANTHER PTHR30435 313 436 3.4E-44 T 23-04-2016 RD1_RS02690 057b08388ee2815fa3858a3930e037ae 436 SUPERFAMILY SSF117143 80 396 3.53E-56 T 23-04-2016 RD1_RS02690 057b08388ee2815fa3858a3930e037ae 436 Pfam PF07559 Flagellar basal body protein FlaE 192 315 3.0E-5 T 23-04-2016 IPR011491 Flagellar hook protein FlgE RD1_RS02690 057b08388ee2815fa3858a3930e037ae 436 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 6 417 9.0E-75 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RD1_RS18215 f809eb2bc88741888eebe641e55a0b39 129 TIGRFAM TIGR01354 cyt_deam_tetra: cytidine deaminase 3 126 5.4E-38 T 23-04-2016 IPR006262 Cytidine deaminase, homotetrameric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 RD1_RS18215 f809eb2bc88741888eebe641e55a0b39 129 SUPERFAMILY SSF53927 3 127 1.99E-38 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RD1_RS18215 f809eb2bc88741888eebe641e55a0b39 129 Gene3D G3DSA:3.40.140.10 3 127 5.9E-42 T 23-04-2016 RD1_RS18215 f809eb2bc88741888eebe641e55a0b39 129 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 6 99 8.4E-12 T 23-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 RD1_RS18215 f809eb2bc88741888eebe641e55a0b39 129 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 50 90 - T 23-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RD1_RS18215 f809eb2bc88741888eebe641e55a0b39 129 PANTHER PTHR11644 3 127 3.1E-37 T 23-04-2016 RD1_RS02760 fd40d1ab4a383ea8de39615725d4170f 289 PANTHER PTHR12715 1 289 1.4E-42 T 23-04-2016 RD1_RS02760 fd40d1ab4a383ea8de39615725d4170f 289 SUPERFAMILY SSF103481 38 138 1.7E-14 T 23-04-2016 RD1_RS02760 fd40d1ab4a383ea8de39615725d4170f 289 SUPERFAMILY SSF103481 183 285 1.57E-13 T 23-04-2016 RD1_RS02760 fd40d1ab4a383ea8de39615725d4170f 289 Pfam PF00892 EamA-like transporter family 5 137 2.2E-20 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS02760 fd40d1ab4a383ea8de39615725d4170f 289 Pfam PF00892 EamA-like transporter family 148 281 7.0E-14 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS07295 d23365a109424b8fcbb1847de380793c 474 Pfam PF13440 Polysaccharide biosynthesis protein 27 316 1.7E-41 T 23-04-2016 RD1_RS00800 cffed1f8c88fbbc964f87a9b27679807 465 PIRSF PIRSF000521 26 451 2.1E-29 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS00800 cffed1f8c88fbbc964f87a9b27679807 465 PANTHER PTHR11986 38 456 1.5E-152 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS00800 cffed1f8c88fbbc964f87a9b27679807 465 SUPERFAMILY SSF53383 9 451 9.76E-122 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS00800 cffed1f8c88fbbc964f87a9b27679807 465 Pfam PF00202 Aminotransferase class-III 36 448 1.2E-100 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS00800 cffed1f8c88fbbc964f87a9b27679807 465 Gene3D G3DSA:3.40.640.10 72 345 8.2E-82 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS00800 cffed1f8c88fbbc964f87a9b27679807 465 Gene3D G3DSA:3.90.1150.10 10 71 4.7E-45 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS00800 cffed1f8c88fbbc964f87a9b27679807 465 Gene3D G3DSA:3.90.1150.10 346 451 4.7E-45 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS00800 cffed1f8c88fbbc964f87a9b27679807 465 PANTHER PTHR11986:SF81 38 456 1.5E-152 T 23-04-2016 RD1_RS00800 cffed1f8c88fbbc964f87a9b27679807 465 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 259 296 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS19395 00d53536ba1d71233f09957493bb3c2d 281 Pfam PF00892 EamA-like transporter family 3 133 4.0E-12 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS19395 00d53536ba1d71233f09957493bb3c2d 281 Pfam PF00892 EamA-like transporter family 149 280 3.1E-8 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS19395 00d53536ba1d71233f09957493bb3c2d 281 SUPERFAMILY SSF103481 187 279 3.27E-8 T 23-04-2016 RD1_RS19395 00d53536ba1d71233f09957493bb3c2d 281 PANTHER PTHR22911 3 281 2.5E-17 T 23-04-2016 RD1_RS19395 00d53536ba1d71233f09957493bb3c2d 281 SUPERFAMILY SSF103481 48 136 8.89E-5 T 23-04-2016 RD1_RS15000 346c267e0609181fa1ff2839de3dbb59 253 Pfam PF03099 Biotin/lipoate A/B protein ligase family 21 142 1.1E-12 T 23-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 RD1_RS15000 346c267e0609181fa1ff2839de3dbb59 253 SUPERFAMILY SSF55681 7 204 9.11E-42 T 23-04-2016 RD1_RS15000 346c267e0609181fa1ff2839de3dbb59 253 Gene3D G3DSA:3.30.930.10 8 205 3.4E-45 T 23-04-2016 RD1_RS15000 346c267e0609181fa1ff2839de3dbb59 253 PANTHER PTHR12835 17 253 7.8E-39 T 23-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RD1_RS15000 346c267e0609181fa1ff2839de3dbb59 253 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 18 252 4.3E-34 T 23-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RD1_RS15000 346c267e0609181fa1ff2839de3dbb59 253 Gene3D G3DSA:2.30.30.100 216 251 9.0E-4 T 23-04-2016 RD1_RS02340 68c63c34864e3ead799537fa5524aa2d 381 SUPERFAMILY SSF56645 4 239 1.31E-76 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RD1_RS02340 68c63c34864e3ead799537fa5524aa2d 381 PANTHER PTHR10909:SF305 1 377 3.9E-143 T 23-04-2016 RD1_RS02340 68c63c34864e3ead799537fa5524aa2d 381 SUPERFAMILY SSF47203 225 376 4.99E-53 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS02340 68c63c34864e3ead799537fa5524aa2d 381 Gene3D G3DSA:2.40.110.10 119 214 1.8E-38 T 23-04-2016 RD1_RS02340 68c63c34864e3ead799537fa5524aa2d 381 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 226 374 8.8E-45 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS02340 68c63c34864e3ead799537fa5524aa2d 381 Gene3D G3DSA:1.10.540.10 4 114 3.4E-33 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS02340 68c63c34864e3ead799537fa5524aa2d 381 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 121 133 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RD1_RS02340 68c63c34864e3ead799537fa5524aa2d 381 Gene3D G3DSA:1.20.140.10 215 378 3.8E-63 T 23-04-2016 RD1_RS02340 68c63c34864e3ead799537fa5524aa2d 381 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 113 1.9E-29 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS02340 68c63c34864e3ead799537fa5524aa2d 381 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 119 214 1.5E-26 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RD1_RS02340 68c63c34864e3ead799537fa5524aa2d 381 PIRSF PIRSF016578 2 380 2.8E-20 T 23-04-2016 RD1_RS02340 68c63c34864e3ead799537fa5524aa2d 381 PANTHER PTHR10909 1 377 3.9E-143 T 23-04-2016 RD1_RS07600 ca74ecbf4d7e749620e04dd1943b0767 322 PANTHER PTHR32196:SF40 4 322 1.8E-95 T 23-04-2016 RD1_RS07600 ca74ecbf4d7e749620e04dd1943b0767 322 PANTHER PTHR32196 4 322 1.8E-95 T 23-04-2016 RD1_RS07600 ca74ecbf4d7e749620e04dd1943b0767 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 268 6.0E-35 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 Gene3D G3DSA:1.10.10.60 404 470 6.4E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 SUPERFAMILY SSF55785 146 234 2.62E-7 T 23-04-2016 IPR000014 PAS domain RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 Pfam PF13188 PAS domain 157 198 4.0E-4 T 23-04-2016 IPR000014 PAS domain RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 SMART SM00091 20 86 33.0 T 23-04-2016 IPR000014 PAS domain RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 SMART SM00091 157 224 5.5E-5 T 23-04-2016 IPR000014 PAS domain RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 SMART SM00091 276 345 0.068 T 23-04-2016 IPR000014 PAS domain RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 281 391 2.2E-6 T 23-04-2016 IPR000014 PAS domain RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 SUPERFAMILY SSF46689 404 470 1.21E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 TIGRFAM TIGR02040 PpsR-CrtJ: transcriptional regulator PpsR 26 470 7.1E-120 T 23-04-2016 IPR011785 Transcription regulator PpsR UniPathway: UPA00683 RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 SUPERFAMILY SSF55785 279 386 1.74E-7 T 23-04-2016 IPR000014 PAS domain RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 Pfam PF02954 Bacterial regulatory protein, Fis family 431 468 9.0E-13 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 434 451 1.4E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 451 471 1.4E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 Gene3D G3DSA:3.30.450.20 281 386 3.6E-7 T 23-04-2016 RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 Pfam PF13426 PAS domain 287 386 8.7E-9 T 23-04-2016 IPR000014 PAS domain RD1_RS00655 2b194a65ef8406c485ca0991003065cc 475 Gene3D G3DSA:3.30.450.20 150 237 3.2E-7 T 23-04-2016 RD1_RS04290 c7241e846d100ac7d46522aeb8c4e93f 162 Hamap MF_00023 SsrA-binding protein [smpB]. 1 162 64.849 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 RD1_RS04290 c7241e846d100ac7d46522aeb8c4e93f 162 PANTHER PTHR30308 4 162 2.2E-73 T 23-04-2016 RD1_RS04290 c7241e846d100ac7d46522aeb8c4e93f 162 Gene3D G3DSA:2.40.280.10 15 136 1.4E-48 T 23-04-2016 IPR023620 Small protein B RD1_RS04290 c7241e846d100ac7d46522aeb8c4e93f 162 PANTHER PTHR30308:SF2 4 162 2.2E-73 T 23-04-2016 RD1_RS04290 c7241e846d100ac7d46522aeb8c4e93f 162 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 17 141 3.0E-54 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 RD1_RS04290 c7241e846d100ac7d46522aeb8c4e93f 162 Pfam PF01668 SmpB protein 16 79 1.8E-28 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 RD1_RS04290 c7241e846d100ac7d46522aeb8c4e93f 162 ProSitePatterns PS01317 SsrA-binding protein. 35 47 - T 23-04-2016 IPR020081 SsrA-binding protein, conserved site RD1_RS04290 c7241e846d100ac7d46522aeb8c4e93f 162 TIGRFAM TIGR00086 smpB: SsrA-binding protein 17 159 1.7E-53 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 RD1_RS04290 c7241e846d100ac7d46522aeb8c4e93f 162 SUPERFAMILY SSF74982 10 141 6.8E-48 T 23-04-2016 IPR023620 Small protein B RD1_RS05985 79b646759430a5fbc53718132da1b32c 129 Pfam PF01042 Endoribonuclease L-PSP 11 127 2.1E-16 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family RD1_RS05985 79b646759430a5fbc53718132da1b32c 129 Gene3D G3DSA:3.30.1330.40 2 128 2.8E-33 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RD1_RS05985 79b646759430a5fbc53718132da1b32c 129 SUPERFAMILY SSF55298 2 128 2.36E-26 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RD1_RS05985 79b646759430a5fbc53718132da1b32c 129 PANTHER PTHR11803 1 127 4.1E-22 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family RD1_RS13535 1f983a95f32fbed52613d71c625ae4b6 359 Gene3D G3DSA:3.40.50.1100 54 154 1.6E-38 T 23-04-2016 RD1_RS13535 1f983a95f32fbed52613d71c625ae4b6 359 SUPERFAMILY SSF53686 15 337 1.83E-82 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS13535 1f983a95f32fbed52613d71c625ae4b6 359 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 21 324 1.8E-59 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS13535 1f983a95f32fbed52613d71c625ae4b6 359 PANTHER PTHR10314 1 344 8.5E-94 T 23-04-2016 RD1_RS13535 1f983a95f32fbed52613d71c625ae4b6 359 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 44 62 - T 23-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RD1_RS13535 1f983a95f32fbed52613d71c625ae4b6 359 PANTHER PTHR10314:SF110 1 344 8.5E-94 T 23-04-2016 RD1_RS13535 1f983a95f32fbed52613d71c625ae4b6 359 Gene3D G3DSA:3.40.50.1100 160 342 3.7E-61 T 23-04-2016 RD1_RS13535 1f983a95f32fbed52613d71c625ae4b6 359 Gene3D G3DSA:3.40.50.1100 15 53 3.7E-61 T 23-04-2016 RD1_RS08875 b8b8898588d08ab14751fbda017a780f 262 PANTHER PTHR11934 1 241 1.9E-88 T 23-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RD1_RS08875 b8b8898588d08ab14751fbda017a780f 262 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 57 231 1.0E-57 T 23-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RD1_RS08875 b8b8898588d08ab14751fbda017a780f 262 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 13 232 6.1E-76 T 23-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RD1_RS08875 b8b8898588d08ab14751fbda017a780f 262 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 8 235 31.044 T 23-04-2016 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RD1_RS08875 b8b8898588d08ab14751fbda017a780f 262 SUPERFAMILY SSF100950 8 150 2.09E-41 T 23-04-2016 RD1_RS08875 b8b8898588d08ab14751fbda017a780f 262 Gene3D G3DSA:3.30.70.260 143 206 4.8E-24 T 23-04-2016 RD1_RS08875 b8b8898588d08ab14751fbda017a780f 262 SUPERFAMILY SSF75445 134 218 4.58E-20 T 23-04-2016 RD1_RS08875 b8b8898588d08ab14751fbda017a780f 262 Gene3D G3DSA:3.40.50.1360 9 142 1.4E-54 T 23-04-2016 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 PANTHER PTHR30222 20 342 1.9E-83 T 23-04-2016 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 Gene3D G3DSA:3.40.190.10 266 306 3.9E-47 T 23-04-2016 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 Gene3D G3DSA:3.40.190.10 20 127 3.9E-47 T 23-04-2016 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 Pfam PF13416 Bacterial extracellular solute-binding protein 37 304 7.1E-21 T 23-04-2016 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 Gene3D G3DSA:3.40.190.10 129 265 4.0E-16 T 23-04-2016 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 PANTHER PTHR30222:SF9 20 342 1.9E-83 T 23-04-2016 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 SUPERFAMILY SSF53850 21 337 8.5E-74 T 23-04-2016 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 244 263 5.4E-31 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 200 219 5.4E-31 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 43 64 5.4E-31 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 289 315 5.4E-31 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 118 134 5.4E-31 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 27 43 5.4E-31 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 163 182 5.4E-31 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 71 85 5.4E-31 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS18885 0cbe958253c082885fc121473763e9b4 342 PIRSF PIRSF019574 1 342 5.2E-84 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RD1_RS03765 242321bc8be92c2041fb84485a3a90d9 119 Gene3D G3DSA:3.30.70.900 3 78 7.9E-15 T 23-04-2016 RD1_RS03765 242321bc8be92c2041fb84485a3a90d9 119 SUPERFAMILY SSF54909 1 92 1.73E-11 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS03765 242321bc8be92c2041fb84485a3a90d9 119 Pfam PF03992 Antibiotic biosynthesis monooxygenase 10 76 5.6E-11 T 23-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain RD1_RS13230 f1dd901d3056cd683127b3ef691ade3c 479 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 2 475 2.1E-165 T 23-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 RD1_RS13230 f1dd901d3056cd683127b3ef691ade3c 479 PANTHER PTHR12526 1 477 2.4E-128 T 23-04-2016 RD1_RS13230 f1dd901d3056cd683127b3ef691ade3c 479 Hamap MF_00484 Glycogen synthase [glgA]. 1 476 45.882 T 23-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 RD1_RS13230 f1dd901d3056cd683127b3ef691ade3c 479 Pfam PF08323 Starch synthase catalytic domain 2 235 6.9E-77 T 23-04-2016 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 RD1_RS13230 f1dd901d3056cd683127b3ef691ade3c 479 SUPERFAMILY SSF53756 3 478 1.01E-116 T 23-04-2016 RD1_RS13230 f1dd901d3056cd683127b3ef691ade3c 479 Pfam PF00534 Glycosyl transferases group 1 283 438 1.2E-14 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RD1_RS13230 f1dd901d3056cd683127b3ef691ade3c 479 PANTHER PTHR12526:SF295 1 477 2.4E-128 T 23-04-2016 RD1_RS13230 f1dd901d3056cd683127b3ef691ade3c 479 Gene3D G3DSA:3.40.50.2000 249 457 2.8E-65 T 23-04-2016 RD1_RS20085 9384fcf0745c12dae5a7e6fc504356e9 293 PANTHER PTHR18919:SF110 1 290 1.5E-148 T 23-04-2016 RD1_RS20085 9384fcf0745c12dae5a7e6fc504356e9 293 PANTHER PTHR18919 1 290 1.5E-148 T 23-04-2016 RD1_RS20085 9384fcf0745c12dae5a7e6fc504356e9 293 Pfam PF00108 Thiolase, N-terminal domain 1 180 4.2E-56 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RD1_RS20085 9384fcf0745c12dae5a7e6fc504356e9 293 SUPERFAMILY SSF53901 192 293 1.0E-33 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS20085 9384fcf0745c12dae5a7e6fc504356e9 293 Gene3D G3DSA:3.40.47.10 1 43 1.4E-36 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS20085 9384fcf0745c12dae5a7e6fc504356e9 293 Gene3D G3DSA:3.40.47.10 115 195 1.4E-36 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS20085 9384fcf0745c12dae5a7e6fc504356e9 293 Pfam PF02803 Thiolase, C-terminal domain 190 292 3.8E-34 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RD1_RS20085 9384fcf0745c12dae5a7e6fc504356e9 293 Gene3D G3DSA:3.40.47.10 196 293 3.8E-48 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS20085 9384fcf0745c12dae5a7e6fc504356e9 293 Gene3D G3DSA:3.40.47.10 62 114 3.8E-48 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS20085 9384fcf0745c12dae5a7e6fc504356e9 293 SUPERFAMILY SSF53901 1 188 1.13E-50 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS20085 9384fcf0745c12dae5a7e6fc504356e9 293 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 1 293 3.5E-90 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RD1_RS17755 e7f3999abe2ecd85dd1361ff9d1313c4 314 Pfam PF00294 pfkB family carbohydrate kinase 7 295 4.0E-46 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RD1_RS17755 e7f3999abe2ecd85dd1361ff9d1313c4 314 SUPERFAMILY SSF53613 5 307 1.36E-64 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS17755 e7f3999abe2ecd85dd1361ff9d1313c4 314 PANTHER PTHR10584 1 303 5.9E-55 T 23-04-2016 RD1_RS17755 e7f3999abe2ecd85dd1361ff9d1313c4 314 Gene3D G3DSA:3.40.1190.20 2 309 1.7E-65 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS18340 4d8a085396c85c309e2a91ad83a9dbe0 244 Pfam PF00227 Proteasome subunit 4 186 3.2E-7 T 23-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 RD1_RS18340 4d8a085396c85c309e2a91ad83a9dbe0 244 SUPERFAMILY SSF56235 2 240 9.82E-36 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS18340 4d8a085396c85c309e2a91ad83a9dbe0 244 PIRSF PIRSF009120 1 243 1.1E-96 T 23-04-2016 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 RD1_RS18340 4d8a085396c85c309e2a91ad83a9dbe0 244 Gene3D G3DSA:3.60.20.10 2 215 4.5E-19 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS17470 ba7388a51d71b0d5622aae6aef1233cf 207 SUPERFAMILY SSF55469 5 197 2.36E-41 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RD1_RS17470 ba7388a51d71b0d5622aae6aef1233cf 207 Gene3D G3DSA:3.40.109.10 5 189 1.8E-37 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RD1_RS17470 ba7388a51d71b0d5622aae6aef1233cf 207 Pfam PF00881 Nitroreductase family 16 181 9.3E-26 T 23-04-2016 IPR029479 Nitroreductase RD1_RS17470 ba7388a51d71b0d5622aae6aef1233cf 207 PANTHER PTHR21712:SF31 3 198 4.3E-24 T 23-04-2016 RD1_RS17470 ba7388a51d71b0d5622aae6aef1233cf 207 PANTHER PTHR21712 3 198 4.3E-24 T 23-04-2016 RD1_RS17470 ba7388a51d71b0d5622aae6aef1233cf 207 TIGRFAM TIGR02476 BluB: 5,6-dimethylbenzimidazole synthase 6 205 8.6E-84 T 23-04-2016 IPR012825 5,6-dimethylbenzimidazole synthase BluB KEGG: 00740+1.13.11.79|MetaCyc: PWY-5508|MetaCyc: PWY-5523 RD1_RS16500 2a163f4b4715d4103dba2672c2af927f 244 PANTHER PTHR24220 5 239 2.3E-86 T 23-04-2016 RD1_RS16500 2a163f4b4715d4103dba2672c2af927f 244 SMART SM00382 28 213 1.0E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS16500 2a163f4b4715d4103dba2672c2af927f 244 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS16500 2a163f4b4715d4103dba2672c2af927f 244 SUPERFAMILY SSF52540 6 228 1.13E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16500 2a163f4b4715d4103dba2672c2af927f 244 PANTHER PTHR24220:SF568 5 239 2.3E-86 T 23-04-2016 RD1_RS16500 2a163f4b4715d4103dba2672c2af927f 244 Pfam PF00005 ABC transporter 19 164 5.7E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS16500 2a163f4b4715d4103dba2672c2af927f 244 Gene3D G3DSA:3.40.50.300 6 233 3.3E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11915 1213aba4ad72f00e7c03ce1626911f3e 224 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 166 183 - T 23-04-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 RD1_RS11915 1213aba4ad72f00e7c03ce1626911f3e 224 Gene3D G3DSA:3.40.1180.10 1 223 3.7E-91 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RD1_RS11915 1213aba4ad72f00e7c03ce1626911f3e 224 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 1 221 35.269 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RD1_RS11915 1213aba4ad72f00e7c03ce1626911f3e 224 Pfam PF01255 Putative undecaprenyl diphosphate synthase 1 220 3.9E-80 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RD1_RS11915 1213aba4ad72f00e7c03ce1626911f3e 224 SUPERFAMILY SSF64005 1 216 7.98E-81 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RD1_RS11915 1213aba4ad72f00e7c03ce1626911f3e 224 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 1 220 7.0E-80 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RD1_RS11915 1213aba4ad72f00e7c03ce1626911f3e 224 PANTHER PTHR10291 1 224 6.7E-115 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RD1_RS06550 c58c1b177c2578209d02876a5b7c1b80 308 Pfam PF00491 Arginase family 5 295 2.9E-68 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS06550 c58c1b177c2578209d02876a5b7c1b80 308 Gene3D G3DSA:3.40.800.10 3 303 3.6E-78 T 23-04-2016 IPR023696 Ureohydrolase domain RD1_RS06550 c58c1b177c2578209d02876a5b7c1b80 308 PIRSF PIRSF036979 1 300 3.4E-27 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS06550 c58c1b177c2578209d02876a5b7c1b80 308 PANTHER PTHR11358:SF2 2 307 3.1E-90 T 23-04-2016 RD1_RS06550 c58c1b177c2578209d02876a5b7c1b80 308 PANTHER PTHR11358 2 307 3.1E-90 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS06550 c58c1b177c2578209d02876a5b7c1b80 308 TIGRFAM TIGR01229 rocF_arginase: arginase 8 298 5.5E-88 T 23-04-2016 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: REACT_13|UniPathway: UPA00158 RD1_RS06550 c58c1b177c2578209d02876a5b7c1b80 308 SUPERFAMILY SSF52768 4 306 1.58E-82 T 23-04-2016 RD1_RS06550 c58c1b177c2578209d02876a5b7c1b80 308 ProSitePatterns PS01053 Arginase family signature. 225 246 - T 23-04-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Reactome: REACT_13 RD1_RS06550 c58c1b177c2578209d02876a5b7c1b80 308 PRINTS PR00116 Arginase signature 94 109 5.5E-47 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS06550 c58c1b177c2578209d02876a5b7c1b80 308 PRINTS PR00116 Arginase signature 222 251 5.5E-47 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS06550 c58c1b177c2578209d02876a5b7c1b80 308 PRINTS PR00116 Arginase signature 121 148 5.5E-47 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS06550 c58c1b177c2578209d02876a5b7c1b80 308 PRINTS PR00116 Arginase signature 173 191 5.5E-47 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS06550 c58c1b177c2578209d02876a5b7c1b80 308 PRINTS PR00116 Arginase signature 257 271 5.5E-47 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS06700 975a36903e80adea59ca5ca3d6f9d207 432 PANTHER PTHR30085:SF3 214 432 6.3E-75 T 23-04-2016 RD1_RS06700 975a36903e80adea59ca5ca3d6f9d207 432 PANTHER PTHR30085:SF3 76 159 6.3E-75 T 23-04-2016 RD1_RS06700 975a36903e80adea59ca5ca3d6f9d207 432 PANTHER PTHR30085 214 432 6.3E-75 T 23-04-2016 RD1_RS06700 975a36903e80adea59ca5ca3d6f9d207 432 PANTHER PTHR30085 76 159 6.3E-75 T 23-04-2016 RD1_RS06700 975a36903e80adea59ca5ca3d6f9d207 432 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 240 426 1.4E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS06700 975a36903e80adea59ca5ca3d6f9d207 432 Gene3D G3DSA:1.10.3720.10 224 428 4.3E-37 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS06700 975a36903e80adea59ca5ca3d6f9d207 432 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 224 318 1.9E-15 T 23-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RD1_RS06700 975a36903e80adea59ca5ca3d6f9d207 432 SUPERFAMILY SSF161098 222 413 2.09E-32 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08230 25469234ac82e0143397d8530e17838d 376 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 4 290 5.4E-71 T 23-04-2016 IPR018712 Domain of unknown function DUF2235 RD1_RS08230 25469234ac82e0143397d8530e17838d 376 SUPERFAMILY SSF53474 27 240 2.58E-7 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08230 25469234ac82e0143397d8530e17838d 376 PANTHER PTHR33840 4 301 3.4E-67 T 23-04-2016 RD1_RS08230 25469234ac82e0143397d8530e17838d 376 PANTHER PTHR33840:SF1 4 301 3.4E-67 T 23-04-2016 RD1_RS01660 000c350f6e2b783d2efe2ea3fd0a9405 925 TIGRFAM TIGR02226 two_anch: N-terminal double-transmembrane domain 9 86 1.4E-16 T 23-04-2016 IPR011933 Double transmembrane domain RD1_RS01660 000c350f6e2b783d2efe2ea3fd0a9405 925 Pfam PF07584 Aerotolerance regulator N-terminal 8 81 1.6E-18 T 23-04-2016 IPR024163 Aerotolerance regulator, N-terminal RD1_RS01660 000c350f6e2b783d2efe2ea3fd0a9405 925 SUPERFAMILY SSF52317 315 515 5.49E-8 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS01660 000c350f6e2b783d2efe2ea3fd0a9405 925 Pfam PF13709 Domain of unknown function (DUF4159) 687 905 1.2E-54 T 23-04-2016 IPR025297 Domain of unknown function DUF4159 RD1_RS14695 33c8f923a5f997e955f8ab13d3c933d6 176 Gene3D G3DSA:3.40.50.2020 15 170 7.6E-38 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS14695 33c8f923a5f997e955f8ab13d3c933d6 176 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 11 176 40.004 T 23-04-2016 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22|UniPathway: UPA00602 RD1_RS14695 33c8f923a5f997e955f8ab13d3c933d6 176 SUPERFAMILY SSF53271 11 168 4.97E-29 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS14695 33c8f923a5f997e955f8ab13d3c933d6 176 Pfam PF00156 Phosphoribosyl transferase domain 19 168 7.1E-19 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RD1_RS14695 33c8f923a5f997e955f8ab13d3c933d6 176 PANTHER PTHR39563 12 175 9.3E-44 T 23-04-2016 RD1_RS03320 2d72b9e20f2dd86cbf2719adf50ac81f 216 Gene3D G3DSA:3.40.50.1000 90 211 1.2E-39 T 23-04-2016 IPR023214 HAD-like domain RD1_RS03320 2d72b9e20f2dd86cbf2719adf50ac81f 216 Gene3D G3DSA:3.40.50.1000 2 19 1.2E-39 T 23-04-2016 IPR023214 HAD-like domain RD1_RS03320 2d72b9e20f2dd86cbf2719adf50ac81f 216 Gene3D G3DSA:1.10.150.240 20 83 5.2E-7 T 23-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RD1_RS03320 2d72b9e20f2dd86cbf2719adf50ac81f 216 SUPERFAMILY SSF56784 6 214 1.57E-47 T 23-04-2016 IPR023214 HAD-like domain RD1_RS03320 2d72b9e20f2dd86cbf2719adf50ac81f 216 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 78 186 2.9E-16 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS03320 2d72b9e20f2dd86cbf2719adf50ac81f 216 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 185 1.7E-22 T 23-04-2016 IPR023214 HAD-like domain RD1_RS03320 2d72b9e20f2dd86cbf2719adf50ac81f 216 PANTHER PTHR18901:SF9 1 211 2.2E-48 T 23-04-2016 RD1_RS03320 2d72b9e20f2dd86cbf2719adf50ac81f 216 PANTHER PTHR18901 1 211 2.2E-48 T 23-04-2016 RD1_RS08305 15c9f6d7658fe74a370cd5d0f6db6f97 358 PANTHER PTHR11079:SF10 1 214 2.1E-56 T 23-04-2016 RD1_RS08305 15c9f6d7658fe74a370cd5d0f6db6f97 358 Pfam PF01872 RibD C-terminal domain 141 349 1.2E-40 T 23-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RD1_RS08305 15c9f6d7658fe74a370cd5d0f6db6f97 358 SUPERFAMILY SSF53927 1 136 1.56E-41 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RD1_RS08305 15c9f6d7658fe74a370cd5d0f6db6f97 358 Gene3D G3DSA:3.40.140.10 1 122 6.7E-29 T 23-04-2016 RD1_RS08305 15c9f6d7658fe74a370cd5d0f6db6f97 358 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 17 93 2.0E-15 T 23-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 RD1_RS08305 15c9f6d7658fe74a370cd5d0f6db6f97 358 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 1 351 7.6E-102 T 23-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 RD1_RS08305 15c9f6d7658fe74a370cd5d0f6db6f97 358 PIRSF PIRSF006769 1 357 3.4E-120 T 23-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 RD1_RS08305 15c9f6d7658fe74a370cd5d0f6db6f97 358 PANTHER PTHR11079 1 214 2.1E-56 T 23-04-2016 RD1_RS08305 15c9f6d7658fe74a370cd5d0f6db6f97 358 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 140 350 1.3E-50 T 23-04-2016 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 RD1_RS08305 15c9f6d7658fe74a370cd5d0f6db6f97 358 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 44 82 - T 23-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RD1_RS08305 15c9f6d7658fe74a370cd5d0f6db6f97 358 SUPERFAMILY SSF53597 139 353 7.32E-57 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain RD1_RS08305 15c9f6d7658fe74a370cd5d0f6db6f97 358 Gene3D G3DSA:3.40.430.10 123 354 3.5E-69 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain RD1_RS14355 6faa54dd025b74a26c7de869d0b78b1a 326 PANTHER PTHR30004 2 324 6.1E-121 T 23-04-2016 RD1_RS14355 6faa54dd025b74a26c7de869d0b78b1a 326 Gene3D G3DSA:3.40.718.10 4 324 6.4E-120 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RD1_RS14355 6faa54dd025b74a26c7de869d0b78b1a 326 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 61 318 5.0E-101 T 23-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 RD1_RS14355 6faa54dd025b74a26c7de869d0b78b1a 326 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 4 322 32.186 T 23-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 RD1_RS14355 6faa54dd025b74a26c7de869d0b78b1a 326 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 8 322 6.9E-124 T 23-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 RD1_RS14355 6faa54dd025b74a26c7de869d0b78b1a 326 PANTHER PTHR30004:SF6 2 324 6.1E-121 T 23-04-2016 RD1_RS14355 6faa54dd025b74a26c7de869d0b78b1a 326 SUPERFAMILY SSF53659 7 323 4.53E-102 T 23-04-2016 RD1_RS17750 b368eb1d609f65fa7913ff5ad7b2df63 236 Pfam PF08547 Complex I intermediate-associated protein 30 (CIA30) 86 220 5.2E-16 T 23-04-2016 IPR013857 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 RD1_RS17750 b368eb1d609f65fa7913ff5ad7b2df63 236 SUPERFAMILY SSF49785 77 235 6.04E-17 T 23-04-2016 IPR008979 Galactose-binding domain-like RD1_RS00785 8d2c42c46035d35ccaeab6ab122e00ef 375 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS00785 8d2c42c46035d35ccaeab6ab122e00ef 375 Pfam PF00005 ABC transporter 34 175 1.2E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS00785 8d2c42c46035d35ccaeab6ab122e00ef 375 Pfam PF08402 TOBE domain 293 373 3.7E-19 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS00785 8d2c42c46035d35ccaeab6ab122e00ef 375 PANTHER PTHR24220:SF481 19 312 4.3E-141 T 23-04-2016 RD1_RS00785 8d2c42c46035d35ccaeab6ab122e00ef 375 PANTHER PTHR24220 19 312 4.3E-141 T 23-04-2016 RD1_RS00785 8d2c42c46035d35ccaeab6ab122e00ef 375 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 48 371 8.6E-118 T 23-04-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 RD1_RS00785 8d2c42c46035d35ccaeab6ab122e00ef 375 SMART SM00382 42 225 1.1E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS00785 8d2c42c46035d35ccaeab6ab122e00ef 375 Gene3D G3DSA:3.40.50.300 11 252 8.4E-79 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00785 8d2c42c46035d35ccaeab6ab122e00ef 375 SUPERFAMILY SSF50331 250 373 1.28E-17 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS00785 8d2c42c46035d35ccaeab6ab122e00ef 375 SUPERFAMILY SSF52540 17 255 8.38E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00505 706edb536cbb6b4e6175e97b517231ae 313 Gene3D G3DSA:3.90.180.10 4 163 7.1E-19 T 23-04-2016 IPR011032 GroES-like RD1_RS00505 706edb536cbb6b4e6175e97b517231ae 313 PANTHER PTHR11695:SF38 14 311 1.8E-20 T 23-04-2016 RD1_RS00505 706edb536cbb6b4e6175e97b517231ae 313 SUPERFAMILY SSF51735 127 268 8.97E-10 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00505 706edb536cbb6b4e6175e97b517231ae 313 Gene3D G3DSA:3.40.50.720 164 252 1.7E-8 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00505 706edb536cbb6b4e6175e97b517231ae 313 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 94 1.1E-5 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RD1_RS00505 706edb536cbb6b4e6175e97b517231ae 313 SUPERFAMILY SSF50129 4 154 2.36E-24 T 23-04-2016 IPR011032 GroES-like RD1_RS00505 706edb536cbb6b4e6175e97b517231ae 313 TIGRFAM TIGR01202 bchC: chlorophyll synthesis pathway protein BchC 3 308 1.0E-140 T 23-04-2016 IPR005903 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a dehydrogenase GO:0016491|GO:0030494|GO:0036354|GO:0055114 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.-|UniPathway: UPA00671 RD1_RS00505 706edb536cbb6b4e6175e97b517231ae 313 PANTHER PTHR11695 14 311 1.8E-20 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS10495 238e6c28d69d8784c864af50d9cffa81 463 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 23-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 RD1_RS10495 238e6c28d69d8784c864af50d9cffa81 463 SUPERFAMILY SSF48557 4 462 7.07E-156 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 RD1_RS10495 238e6c28d69d8784c864af50d9cffa81 463 Pfam PF00206 Lyase 12 342 2.8E-115 T 23-04-2016 IPR022761 Fumarate lyase, N-terminal RD1_RS10495 238e6c28d69d8784c864af50d9cffa81 463 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 462 87.889 T 23-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS10495 238e6c28d69d8784c864af50d9cffa81 463 PANTHER PTHR11444:SF1 1 463 6.4E-250 T 23-04-2016 RD1_RS10495 238e6c28d69d8784c864af50d9cffa81 463 Pfam PF10415 Fumarase C C-terminus 408 461 7.4E-22 T 23-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS10495 238e6c28d69d8784c864af50d9cffa81 463 PANTHER PTHR11444 1 463 6.4E-250 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS10495 238e6c28d69d8784c864af50d9cffa81 463 Gene3D G3DSA:1.10.275.10 3 138 3.2E-61 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal RD1_RS10495 238e6c28d69d8784c864af50d9cffa81 463 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 5 461 7.3E-221 T 23-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS10495 238e6c28d69d8784c864af50d9cffa81 463 Gene3D G3DSA:1.20.200.10 139 402 6.3E-104 T 23-04-2016 RD1_RS10495 238e6c28d69d8784c864af50d9cffa81 463 Gene3D G3DSA:1.10.40.30 405 463 5.3E-29 T 23-04-2016 RD1_RS10495 238e6c28d69d8784c864af50d9cffa81 463 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 9.3E-35 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS10495 238e6c28d69d8784c864af50d9cffa81 463 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 9.3E-35 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS10495 238e6c28d69d8784c864af50d9cffa81 463 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 9.3E-35 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS10495 238e6c28d69d8784c864af50d9cffa81 463 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 9.3E-35 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS14460 aa35070b03ddde2753d17c06ec0af620 377 SUPERFAMILY SSF53067 64 109 4.66E-14 T 23-04-2016 RD1_RS14460 aa35070b03ddde2753d17c06ec0af620 377 SUPERFAMILY SSF53067 139 323 4.66E-14 T 23-04-2016 RD1_RS14460 aa35070b03ddde2753d17c06ec0af620 377 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 11 367 33.097 T 23-04-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 RD1_RS14460 aa35070b03ddde2753d17c06ec0af620 377 Pfam PF03702 Uncharacterised protein family (UPF0075) 14 365 5.6E-73 T 23-04-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 RD1_RS14460 aa35070b03ddde2753d17c06ec0af620 377 PANTHER PTHR30605 5 372 6.7E-91 T 23-04-2016 RD1_RS14460 aa35070b03ddde2753d17c06ec0af620 377 Gene3D G3DSA:3.30.420.40 141 327 1.5E-53 T 23-04-2016 RD1_RS12200 c684e8e5d9c2f74dcedf017ffce78cc4 145 Gene3D G3DSA:3.40.50.9100 2 144 2.9E-66 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RD1_RS12200 c684e8e5d9c2f74dcedf017ffce78cc4 145 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 23-04-2016 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RD1_RS12200 c684e8e5d9c2f74dcedf017ffce78cc4 145 PANTHER PTHR21272 1 144 2.0E-85 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RD1_RS12200 c684e8e5d9c2f74dcedf017ffce78cc4 145 PIRSF PIRSF001399 1 145 8.2E-63 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RD1_RS12200 c684e8e5d9c2f74dcedf017ffce78cc4 145 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 17 132 4.0E-43 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RD1_RS12200 c684e8e5d9c2f74dcedf017ffce78cc4 145 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 142 3.5E-62 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RD1_RS12200 c684e8e5d9c2f74dcedf017ffce78cc4 145 Pfam PF01220 Dehydroquinase class II 4 139 1.7E-60 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RD1_RS12200 c684e8e5d9c2f74dcedf017ffce78cc4 145 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 145 69.361 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RD1_RS12200 c684e8e5d9c2f74dcedf017ffce78cc4 145 SUPERFAMILY SSF52304 3 143 4.06E-61 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RD1_RS10785 8bbc13f23be0f063a0c102447b3a68a7 346 SUPERFAMILY SSF53756 20 343 6.73E-56 T 23-04-2016 RD1_RS10785 8bbc13f23be0f063a0c102447b3a68a7 346 Pfam PF00534 Glycosyl transferases group 1 164 318 9.0E-27 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RD1_RS10785 8bbc13f23be0f063a0c102447b3a68a7 346 PANTHER PTHR12526 89 344 1.7E-43 T 23-04-2016 RD1_RS10785 8bbc13f23be0f063a0c102447b3a68a7 346 Gene3D G3DSA:3.40.50.2000 165 315 3.4E-25 T 23-04-2016 RD1_RS10785 8bbc13f23be0f063a0c102447b3a68a7 346 Pfam PF13439 Glycosyltransferase Family 4 87 157 1.0E-6 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RD1_RS02845 fcdd957b6866c8c38354fd6da617313a 122 Pfam PF02410 Ribosomal silencing factor during starvation 16 111 4.4E-29 T 23-04-2016 RD1_RS02845 fcdd957b6866c8c38354fd6da617313a 122 Gene3D G3DSA:3.30.460.10 10 112 4.5E-39 T 23-04-2016 RD1_RS02845 fcdd957b6866c8c38354fd6da617313a 122 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 14 111 1.5E-36 T 23-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RD1_RS02845 fcdd957b6866c8c38354fd6da617313a 122 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 10 112 24.625 T 23-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RD1_RS02845 fcdd957b6866c8c38354fd6da617313a 122 PANTHER PTHR21043 4 111 1.0E-38 T 23-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RD1_RS02845 fcdd957b6866c8c38354fd6da617313a 122 SUPERFAMILY SSF81301 10 112 1.36E-36 T 23-04-2016 RD1_RS14010 bffa6b1df874f57a1a08c1bb6b2635a8 443 PIRSF PIRSF003095 1 439 1.2E-120 T 23-04-2016 IPR005215 Trigger factor GO:0015031 RD1_RS14010 bffa6b1df874f57a1a08c1bb6b2635a8 443 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 9.0E-32 T 23-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RD1_RS14010 bffa6b1df874f57a1a08c1bb6b2635a8 443 Gene3D G3DSA:3.10.50.40 157 218 1.1E-8 T 23-04-2016 RD1_RS14010 bffa6b1df874f57a1a08c1bb6b2635a8 443 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 265 418 6.8E-37 T 23-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RD1_RS14010 bffa6b1df874f57a1a08c1bb6b2635a8 443 SUPERFAMILY SSF54534 101 247 4.52E-34 T 23-04-2016 RD1_RS14010 bffa6b1df874f57a1a08c1bb6b2635a8 443 PANTHER PTHR30560:SF3 1 436 5.5E-88 T 23-04-2016 RD1_RS14010 bffa6b1df874f57a1a08c1bb6b2635a8 443 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 161 239 2.6E-15 T 23-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 RD1_RS14010 bffa6b1df874f57a1a08c1bb6b2635a8 443 SUPERFAMILY SSF102735 1 132 1.7E-33 T 23-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RD1_RS14010 bffa6b1df874f57a1a08c1bb6b2635a8 443 SUPERFAMILY SSF109998 252 435 1.29E-46 T 23-04-2016 IPR027304 Trigger factor/SurA domain RD1_RS14010 bffa6b1df874f57a1a08c1bb6b2635a8 443 Hamap MF_00303 Trigger factor [tig]. 1 424 19.849 T 23-04-2016 IPR005215 Trigger factor GO:0015031 RD1_RS14010 bffa6b1df874f57a1a08c1bb6b2635a8 443 Gene3D G3DSA:3.30.70.1050 1 117 6.9E-30 T 23-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RD1_RS14010 bffa6b1df874f57a1a08c1bb6b2635a8 443 PANTHER PTHR30560 1 436 5.5E-88 T 23-04-2016 RD1_RS14010 bffa6b1df874f57a1a08c1bb6b2635a8 443 TIGRFAM TIGR00115 tig: trigger factor 11 417 7.0E-122 T 23-04-2016 IPR005215 Trigger factor GO:0015031 RD1_RS14010 bffa6b1df874f57a1a08c1bb6b2635a8 443 Gene3D G3DSA:1.10.3120.10 219 393 6.4E-53 T 23-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RD1_RS12070 ccb2460f24e9b48086a67140259d4ff2 85 SUPERFAMILY SSF47336 4 83 2.62E-15 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain RD1_RS12070 ccb2460f24e9b48086a67140259d4ff2 85 Gene3D G3DSA:1.10.1200.10 4 84 1.4E-23 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain RD1_RS12070 ccb2460f24e9b48086a67140259d4ff2 85 Pfam PF00550 Phosphopantetheine attachment site 5 56 7.6E-10 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain RD1_RS14835 98c06280b85dbb4889941977e0b5d731 301 SUPERFAMILY SSF46785 1 111 4.79E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS14835 98c06280b85dbb4889941977e0b5d731 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.9E-21 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS14835 98c06280b85dbb4889941977e0b5d731 301 Gene3D G3DSA:1.10.10.10 1 87 6.7E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS14835 98c06280b85dbb4889941977e0b5d731 301 Pfam PF03466 LysR substrate binding domain 88 287 2.6E-37 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS14835 98c06280b85dbb4889941977e0b5d731 301 PANTHER PTHR30537 1 288 6.1E-82 T 23-04-2016 RD1_RS14835 98c06280b85dbb4889941977e0b5d731 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.0E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS14835 98c06280b85dbb4889941977e0b5d731 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.0E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS14835 98c06280b85dbb4889941977e0b5d731 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.0E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS14835 98c06280b85dbb4889941977e0b5d731 301 Gene3D G3DSA:3.40.190.10 91 190 8.3E-26 T 23-04-2016 RD1_RS14835 98c06280b85dbb4889941977e0b5d731 301 SUPERFAMILY SSF53850 91 288 4.89E-40 T 23-04-2016 RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 398 416 9.7E-6 T 23-04-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 961 982 9.7E-6 T 23-04-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 SUPERFAMILY SSF51120 5 128 9.59E-6 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 Gene3D G3DSA:2.150.10.10 221 375 3.0E-7 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 Gene3D G3DSA:2.150.10.10 910 1071 1.1E-25 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 Gene3D G3DSA:2.150.10.10 481 620 8.7E-9 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 Gene3D G3DSA:2.150.10.10 111 125 3.0E-7 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 Gene3D G3DSA:2.150.10.10 168 169 3.0E-7 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 Gene3D G3DSA:2.150.10.10 5 75 3.0E-7 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 Gene3D G3DSA:2.150.10.10 729 856 6.1E-5 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 SUPERFAMILY SSF51120 729 845 1.45E-5 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 SUPERFAMILY SSF51120 932 1071 7.33E-22 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 PRINTS PR00313 NodO calcium binding signature 958 969 2.1E-8 T 23-04-2016 RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 PRINTS PR00313 NodO calcium binding signature 979 987 2.1E-8 T 23-04-2016 RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 PRINTS PR00313 NodO calcium binding signature 1015 1024 2.1E-8 T 23-04-2016 RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 PRINTS PR00313 NodO calcium binding signature 988 996 2.1E-8 T 23-04-2016 RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 59 73 0.026 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 779 791 21.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 295 310 0.43 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 539 554 1.4 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1006 1022 3.8 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 969 986 0.0016 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 952 968 0.22 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 948 966 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 957 975 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 975 993 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS02225 ca8397deecf98020c543ed0b6bbab99f 1098 SUPERFAMILY SSF51120 478 615 3.14E-7 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS13805 ad9f9207b923008ab7e3c238ec4a6b5e 269 PANTHER PTHR21496:SF6 4 268 5.0E-97 T 23-04-2016 RD1_RS13805 ad9f9207b923008ab7e3c238ec4a6b5e 269 SUPERFAMILY SSF47240 75 249 6.43E-15 T 23-04-2016 IPR009078 Ferritin-like superfamily RD1_RS13805 ad9f9207b923008ab7e3c238ec4a6b5e 269 PIRSF PIRSF012318 1 269 4.4E-91 T 23-04-2016 IPR011197 Uncharacterised conserved protein UCP012318 RD1_RS13805 ad9f9207b923008ab7e3c238ec4a6b5e 269 PANTHER PTHR21496 4 268 5.0E-97 T 23-04-2016 RD1_RS13805 ad9f9207b923008ab7e3c238ec4a6b5e 269 Pfam PF04305 Protein of unknown function (DUF455) 14 262 1.4E-94 T 23-04-2016 IPR007402 Protein of unknown function DUF455 RD1_RS05615 e4d5cb37894bfb1b29dd96832301bf39 309 PANTHER PTHR23200:SF42 4 283 9.9E-46 T 23-04-2016 RD1_RS05615 e4d5cb37894bfb1b29dd96832301bf39 309 Gene3D G3DSA:3.60.15.10 39 306 1.1E-39 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS05615 e4d5cb37894bfb1b29dd96832301bf39 309 SMART SM00849 96 282 4.7E-9 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS05615 e4d5cb37894bfb1b29dd96832301bf39 309 Pfam PF00753 Metallo-beta-lactamase superfamily 100 275 6.6E-14 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS05615 e4d5cb37894bfb1b29dd96832301bf39 309 SUPERFAMILY SSF56281 34 302 7.73E-39 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS05615 e4d5cb37894bfb1b29dd96832301bf39 309 PANTHER PTHR23200 4 283 9.9E-46 T 23-04-2016 RD1_RS08860 1555bb4bef86c09ca992b2130d1c5f64 236 Gene3D G3DSA:2.60.120.320 116 205 8.1E-8 T 23-04-2016 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|UniPathway: UPA00060 RD1_RS08860 1555bb4bef86c09ca992b2130d1c5f64 236 SMART SM00983 130 200 1.1E-7 T 23-04-2016 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|UniPathway: UPA00060 RD1_RS08860 1555bb4bef86c09ca992b2130d1c5f64 236 Pfam PF04263 Thiamin pyrophosphokinase, catalytic domain 29 123 1.5E-14 T 23-04-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356 RD1_RS08860 1555bb4bef86c09ca992b2130d1c5f64 236 Gene3D G3DSA:3.40.50.10240 9 115 2.8E-23 T 23-04-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356 RD1_RS08860 1555bb4bef86c09ca992b2130d1c5f64 236 Pfam PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain 148 200 1.0E-4 T 23-04-2016 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|UniPathway: UPA00060 RD1_RS08860 1555bb4bef86c09ca992b2130d1c5f64 236 SUPERFAMILY SSF63862 127 206 2.49E-9 T 23-04-2016 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|UniPathway: UPA00060 RD1_RS08860 1555bb4bef86c09ca992b2130d1c5f64 236 PANTHER PTHR13622 14 214 1.0E-16 T 23-04-2016 RD1_RS08860 1555bb4bef86c09ca992b2130d1c5f64 236 TIGRFAM TIGR01378 thi_PPkinase: thiamine pyrophosphokinase 14 204 4.4E-29 T 23-04-2016 IPR006282 Thiamin pyrophosphokinase GO:0004788|GO:0006772 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|UniPathway: UPA00060 RD1_RS08860 1555bb4bef86c09ca992b2130d1c5f64 236 SUPERFAMILY SSF63999 7 128 1.23E-27 T 23-04-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356 RD1_RS05540 1169783e495d1b0b0d5391e6b6558466 353 Pfam PF00899 ThiF family 108 342 3.0E-61 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RD1_RS05540 1169783e495d1b0b0d5391e6b6558466 353 PANTHER PTHR10953:SF153 22 346 2.3E-87 T 23-04-2016 RD1_RS05540 1169783e495d1b0b0d5391e6b6558466 353 Gene3D G3DSA:3.40.50.720 104 346 9.2E-71 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05540 1169783e495d1b0b0d5391e6b6558466 353 PANTHER PTHR10953 22 346 2.3E-87 T 23-04-2016 RD1_RS05540 1169783e495d1b0b0d5391e6b6558466 353 SUPERFAMILY SSF69572 101 346 1.44E-83 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RD1_RS03465 412e05348f1801d2de96e0d11cdbb144 247 PANTHER PTHR30151:SF21 13 243 1.9E-68 T 23-04-2016 RD1_RS03465 412e05348f1801d2de96e0d11cdbb144 247 Gene3D G3DSA:1.10.3720.10 48 237 1.1E-17 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS03465 412e05348f1801d2de96e0d11cdbb144 247 PANTHER PTHR30151 13 243 1.9E-68 T 23-04-2016 RD1_RS03465 412e05348f1801d2de96e0d11cdbb144 247 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 68 229 9.3E-27 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS03465 412e05348f1801d2de96e0d11cdbb144 247 SUPERFAMILY SSF161098 49 229 7.85E-30 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08905 d2c0ce5ae98e77f13b691b6b07b40fe7 131 Pfam PF01336 OB-fold nucleic acid binding domain 41 116 4.2E-12 T 23-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RD1_RS08905 d2c0ce5ae98e77f13b691b6b07b40fe7 131 SUPERFAMILY SSF50249 29 103 6.15E-5 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS08905 d2c0ce5ae98e77f13b691b6b07b40fe7 131 PANTHER PTHR32294:SF4 26 121 2.1E-26 T 23-04-2016 RD1_RS08905 d2c0ce5ae98e77f13b691b6b07b40fe7 131 PANTHER PTHR32294 26 121 2.1E-26 T 23-04-2016 RD1_RS08905 d2c0ce5ae98e77f13b691b6b07b40fe7 131 Gene3D G3DSA:2.40.50.140 30 104 6.5E-7 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS14880 5900e455a461adcea85c3392f535ed8a 257 PANTHER PTHR30188:SF4 1 255 5.9E-78 T 23-04-2016 RD1_RS14880 5900e455a461adcea85c3392f535ed8a 257 Pfam PF02405 Permease MlaE 43 251 2.1E-66 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 RD1_RS14880 5900e455a461adcea85c3392f535ed8a 257 PANTHER PTHR30188 1 255 5.9E-78 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 RD1_RS03310 13cec5ffec3168520956af79df5ad815 161 SUPERFAMILY SSF82153 26 160 3.92E-42 T 23-04-2016 IPR000782 FAS1 domain RD1_RS03310 13cec5ffec3168520956af79df5ad815 161 Pfam PF02469 Fasciclin domain 37 158 4.3E-37 T 23-04-2016 IPR000782 FAS1 domain RD1_RS03310 13cec5ffec3168520956af79df5ad815 161 PANTHER PTHR10900 24 159 5.3E-49 T 23-04-2016 RD1_RS03310 13cec5ffec3168520956af79df5ad815 161 SMART SM00554 61 159 9.1E-34 T 23-04-2016 IPR000782 FAS1 domain RD1_RS03310 13cec5ffec3168520956af79df5ad815 161 Gene3D G3DSA:2.30.180.10 26 159 9.1E-44 T 23-04-2016 IPR000782 FAS1 domain RD1_RS15105 49c922b4dc5df2b8ab343bde2467c0e3 322 SUPERFAMILY SSF52540 118 271 5.31E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15105 49c922b4dc5df2b8ab343bde2467c0e3 322 SUPERFAMILY SSF52540 24 66 5.31E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15105 49c922b4dc5df2b8ab343bde2467c0e3 322 Gene3D G3DSA:3.40.50.300 119 264 1.3E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15105 49c922b4dc5df2b8ab343bde2467c0e3 322 Gene3D G3DSA:3.40.50.300 24 69 1.3E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15105 49c922b4dc5df2b8ab343bde2467c0e3 322 Pfam PF13469 Sulfotransferase family 24 261 2.5E-15 T 23-04-2016 RD1_RS01995 6ff1140953af4abfd94c3c7035ee05d7 385 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 12 355 7.4E-89 T 23-04-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.- RD1_RS01995 6ff1140953af4abfd94c3c7035ee05d7 385 SUPERFAMILY SSF102114 6 383 9.81E-100 T 23-04-2016 RD1_RS01995 6ff1140953af4abfd94c3c7035ee05d7 385 Pfam PF06969 HemN C-terminal domain 312 372 1.5E-9 T 23-04-2016 IPR010723 HemN, C-terminal RD1_RS01995 6ff1140953af4abfd94c3c7035ee05d7 385 SMART SM00729 9 228 2.9E-46 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RD1_RS01995 6ff1140953af4abfd94c3c7035ee05d7 385 Gene3D G3DSA:3.80.30.20 12 232 1.4E-26 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RD1_RS01995 6ff1140953af4abfd94c3c7035ee05d7 385 PANTHER PTHR13932 10 384 8.4E-117 T 23-04-2016 RD1_RS01995 6ff1140953af4abfd94c3c7035ee05d7 385 Pfam PF04055 Radical SAM superfamily 15 178 1.5E-14 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RD1_RS14235 9489450b097f1d2137c9f892ccc535b6 280 SUPERFAMILY SSF161098 91 257 1.6E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS14235 9489450b097f1d2137c9f892ccc535b6 280 PANTHER PTHR30151 34 275 1.7E-48 T 23-04-2016 RD1_RS14235 9489450b097f1d2137c9f892ccc535b6 280 Gene3D G3DSA:1.10.3720.10 91 272 3.2E-10 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS14235 9489450b097f1d2137c9f892ccc535b6 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 273 9.1E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS14235 9489450b097f1d2137c9f892ccc535b6 280 PANTHER PTHR30151:SF9 34 275 1.7E-48 T 23-04-2016 RD1_RS10025 647e1a6988fba07611e22a79e78bd9ca 456 PANTHER PTHR11699 1 454 1.4E-212 T 23-04-2016 RD1_RS10025 647e1a6988fba07611e22a79e78bd9ca 456 Gene3D G3DSA:3.40.309.10 241 424 3.1E-60 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RD1_RS10025 647e1a6988fba07611e22a79e78bd9ca 456 SUPERFAMILY SSF53720 2 453 2.09E-129 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS10025 647e1a6988fba07611e22a79e78bd9ca 456 Pfam PF00171 Aldehyde dehydrogenase family 2 450 6.9E-120 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RD1_RS10025 647e1a6988fba07611e22a79e78bd9ca 456 Gene3D G3DSA:3.40.605.10 2 240 2.5E-61 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RD1_RS10025 647e1a6988fba07611e22a79e78bd9ca 456 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 226 233 - T 23-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 RD1_RS10025 647e1a6988fba07611e22a79e78bd9ca 456 PANTHER PTHR11699:SF65 1 454 1.4E-212 T 23-04-2016 RD1_RS13545 ac2b95ff94ea8956fb137beb51952321 454 PANTHER PTHR24423 1 15 4.8E-59 T 23-04-2016 RD1_RS13545 ac2b95ff94ea8956fb137beb51952321 454 PANTHER PTHR24423 181 454 4.8E-59 T 23-04-2016 RD1_RS13545 ac2b95ff94ea8956fb137beb51952321 454 SUPERFAMILY SSF47384 222 300 6.28E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS13545 ac2b95ff94ea8956fb137beb51952321 454 Pfam PF00512 His Kinase A (phospho-acceptor) domain 241 304 1.3E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS13545 ac2b95ff94ea8956fb137beb51952321 454 Pfam PF08521 Two-component sensor kinase N-terminal 24 163 7.5E-25 T 23-04-2016 IPR013727 Two-component sensor kinase, N-terminal RD1_RS13545 ac2b95ff94ea8956fb137beb51952321 454 Gene3D G3DSA:1.10.287.130 231 298 1.4E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS13545 ac2b95ff94ea8956fb137beb51952321 454 SMART SM00387 349 454 5.5E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS13545 ac2b95ff94ea8956fb137beb51952321 454 Gene3D G3DSA:3.30.565.10 307 454 1.6E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS13545 ac2b95ff94ea8956fb137beb51952321 454 PANTHER PTHR24423:SF474 1 15 4.8E-59 T 23-04-2016 RD1_RS13545 ac2b95ff94ea8956fb137beb51952321 454 PANTHER PTHR24423:SF474 181 454 4.8E-59 T 23-04-2016 RD1_RS13545 ac2b95ff94ea8956fb137beb51952321 454 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 350 453 1.2E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS13545 ac2b95ff94ea8956fb137beb51952321 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 399 1.3E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS13545 ac2b95ff94ea8956fb137beb51952321 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 436 1.3E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS13545 ac2b95ff94ea8956fb137beb51952321 454 SUPERFAMILY SSF55874 294 454 8.38E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS13545 ac2b95ff94ea8956fb137beb51952321 454 SMART SM00388 239 308 0.0026 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS18065 a44af1f69104abdc3370f09cf619de88 349 SUPERFAMILY SSF54427 206 332 4.3E-23 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS18065 a44af1f69104abdc3370f09cf619de88 349 SUPERFAMILY SSF54427 7 158 9.21E-27 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS18065 a44af1f69104abdc3370f09cf619de88 349 Pfam PF07366 SnoaL-like polyketide cyclase 206 323 7.5E-9 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RD1_RS18065 a44af1f69104abdc3370f09cf619de88 349 Pfam PF07366 SnoaL-like polyketide cyclase 29 144 8.2E-12 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RD1_RS18065 a44af1f69104abdc3370f09cf619de88 349 Gene3D G3DSA:3.10.450.50 205 327 1.2E-20 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS18065 a44af1f69104abdc3370f09cf619de88 349 Gene3D G3DSA:3.10.450.50 25 152 1.6E-19 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS00435 985bce6332831926381b90f50516226e 166 Pfam PF13673 Acetyltransferase (GNAT) domain 60 145 6.6E-10 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS00435 985bce6332831926381b90f50516226e 166 Gene3D G3DSA:3.40.630.30 4 149 1.5E-19 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS00435 985bce6332831926381b90f50516226e 166 SUPERFAMILY SSF55729 3 146 9.79E-20 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS13975 51ab501688e2c0a6f445f15561236710 399 PANTHER PTHR30529:SF5 2 189 6.6E-47 T 23-04-2016 RD1_RS13975 51ab501688e2c0a6f445f15561236710 399 PANTHER PTHR30529 2 189 6.6E-47 T 23-04-2016 RD1_RS13975 51ab501688e2c0a6f445f15561236710 399 SMART SM00867 241 396 3.2E-23 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS13975 51ab501688e2c0a6f445f15561236710 399 SUPERFAMILY SSF101874 242 397 6.8E-28 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS13975 51ab501688e2c0a6f445f15561236710 399 Pfam PF04264 YceI-like domain 249 395 5.9E-19 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS13975 51ab501688e2c0a6f445f15561236710 399 Pfam PF01292 Prokaryotic cytochrome b561 9 186 3.6E-26 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RD1_RS13975 51ab501688e2c0a6f445f15561236710 399 SUPERFAMILY SSF81342 5 197 1.88E-31 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RD1_RS13975 51ab501688e2c0a6f445f15561236710 399 Gene3D G3DSA:2.40.128.110 248 396 1.5E-23 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS05800 fd9094a8d1e34d7b401de288903a21eb 623 PRINTS PR01607 Apyrase family signature 16 34 2.6E-19 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS05800 fd9094a8d1e34d7b401de288903a21eb 623 PRINTS PR01607 Apyrase family signature 237 260 2.6E-19 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS05800 fd9094a8d1e34d7b401de288903a21eb 623 PRINTS PR01607 Apyrase family signature 516 535 2.6E-19 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS05800 fd9094a8d1e34d7b401de288903a21eb 623 PRINTS PR01607 Apyrase family signature 277 297 2.6E-19 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS05800 fd9094a8d1e34d7b401de288903a21eb 623 PRINTS PR01607 Apyrase family signature 416 439 2.6E-19 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS05800 fd9094a8d1e34d7b401de288903a21eb 623 PRINTS PR01607 Apyrase family signature 209 226 2.6E-19 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS05800 fd9094a8d1e34d7b401de288903a21eb 623 Pfam PF02872 5'-nucleotidase, C-terminal domain 346 542 7.1E-25 T 23-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RD1_RS05800 fd9094a8d1e34d7b401de288903a21eb 623 PANTHER PTHR11575 11 564 2.9E-93 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RD1_RS05800 fd9094a8d1e34d7b401de288903a21eb 623 PANTHER PTHR11575:SF6 11 564 2.9E-93 T 23-04-2016 RD1_RS05800 fd9094a8d1e34d7b401de288903a21eb 623 Pfam PF00149 Calcineurin-like phosphoesterase 18 254 3.2E-9 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RD1_RS05800 fd9094a8d1e34d7b401de288903a21eb 623 SUPERFAMILY SSF56300 14 343 3.99E-67 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS05800 fd9094a8d1e34d7b401de288903a21eb 623 SUPERFAMILY SSF55816 342 576 7.98E-26 T 23-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RD1_RS05800 fd9094a8d1e34d7b401de288903a21eb 623 Gene3D G3DSA:3.90.780.10 346 564 8.6E-24 T 23-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RD1_RS05800 fd9094a8d1e34d7b401de288903a21eb 623 Gene3D G3DSA:3.60.21.10 13 341 4.7E-71 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS14700 6ba9de43be91d62f0adf3596449a36ad 377 PANTHER PTHR11751 1 372 6.0E-76 T 23-04-2016 RD1_RS14700 6ba9de43be91d62f0adf3596449a36ad 377 Gene3D G3DSA:3.40.640.10 31 241 5.8E-56 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS14700 6ba9de43be91d62f0adf3596449a36ad 377 Gene3D G3DSA:3.90.1150.10 242 372 3.0E-11 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS14700 6ba9de43be91d62f0adf3596449a36ad 377 Pfam PF00155 Aminotransferase class I and II 25 371 4.3E-39 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS14700 6ba9de43be91d62f0adf3596449a36ad 377 SUPERFAMILY SSF53383 13 374 8.7E-82 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS14700 6ba9de43be91d62f0adf3596449a36ad 377 PANTHER PTHR11751:SF405 1 372 6.0E-76 T 23-04-2016 RD1_RS19440 cb64dc95a37f9303cd3f2ab6199052f3 871 Gene3D G3DSA:1.20.1440.90 328 371 6.0E-4 T 23-04-2016 RD1_RS19440 cb64dc95a37f9303cd3f2ab6199052f3 871 PANTHER PTHR30523 63 871 1.1E-199 T 23-04-2016 RD1_RS19440 cb64dc95a37f9303cd3f2ab6199052f3 871 PANTHER PTHR30523:SF0 63 871 1.1E-199 T 23-04-2016 RD1_RS19440 cb64dc95a37f9303cd3f2ab6199052f3 871 SUPERFAMILY SSF51621 16 871 1.18E-229 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS19440 cb64dc95a37f9303cd3f2ab6199052f3 871 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 170 186 3.2E-49 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RD1_RS19440 cb64dc95a37f9303cd3f2ab6199052f3 871 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 700 726 3.2E-49 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RD1_RS19440 cb64dc95a37f9303cd3f2ab6199052f3 871 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 568 597 3.2E-49 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RD1_RS19440 cb64dc95a37f9303cd3f2ab6199052f3 871 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 369 389 3.2E-49 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RD1_RS19440 cb64dc95a37f9303cd3f2ab6199052f3 871 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 121 134 3.2E-49 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RD1_RS19440 cb64dc95a37f9303cd3f2ab6199052f3 871 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 228 243 3.2E-49 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RD1_RS19440 cb64dc95a37f9303cd3f2ab6199052f3 871 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 526 546 3.2E-49 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RD1_RS19440 cb64dc95a37f9303cd3f2ab6199052f3 871 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 528 540 - T 23-04-2016 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RD1_RS19440 cb64dc95a37f9303cd3f2ab6199052f3 871 Pfam PF00311 Phosphoenolpyruvate carboxylase 117 871 1.3E-195 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RD1_RS11330 1d1cfb00228ffe2e877b7a512b12a208 216 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 1.1E-13 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RD1_RS11330 1d1cfb00228ffe2e877b7a512b12a208 216 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 1.1E-13 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RD1_RS11330 1d1cfb00228ffe2e877b7a512b12a208 216 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 1.1E-13 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RD1_RS11330 1d1cfb00228ffe2e877b7a512b12a208 216 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 1.1E-13 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RD1_RS11330 1d1cfb00228ffe2e877b7a512b12a208 216 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 1.1E-13 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RD1_RS11330 1d1cfb00228ffe2e877b7a512b12a208 216 Gene3D G3DSA:3.40.50.720 1 132 3.8E-31 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11330 1d1cfb00228ffe2e877b7a512b12a208 216 Pfam PF02254 TrkA-N domain 3 109 3.8E-19 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RD1_RS11330 1d1cfb00228ffe2e877b7a512b12a208 216 SUPERFAMILY SSF51735 1 132 2.24E-26 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11330 1d1cfb00228ffe2e877b7a512b12a208 216 PANTHER PTHR13789:SF225 1 90 1.5E-19 T 23-04-2016 RD1_RS11330 1d1cfb00228ffe2e877b7a512b12a208 216 Pfam PF02080 TrkA-C domain 148 213 1.4E-7 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS11330 1d1cfb00228ffe2e877b7a512b12a208 216 PANTHER PTHR13789 1 90 1.5E-19 T 23-04-2016 RD1_RS11330 1d1cfb00228ffe2e877b7a512b12a208 216 SUPERFAMILY SSF116726 141 213 1.24E-6 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS05770 e42a091266fe97e2a4dc575ab00104ca 162 Pfam PF13883 Pyridoxamine 5'-phosphate oxidase 13 155 1.9E-6 T 23-04-2016 RD1_RS05770 e42a091266fe97e2a4dc575ab00104ca 162 Gene3D G3DSA:2.30.110.10 3 158 1.1E-45 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS05770 e42a091266fe97e2a4dc575ab00104ca 162 PANTHER PTHR13343 18 161 2.1E-22 T 23-04-2016 RD1_RS05770 e42a091266fe97e2a4dc575ab00104ca 162 PIRSF PIRSF004633 10 161 2.1E-12 T 23-04-2016 IPR014419 Heme utilization protein with pyridoxamine 5'-phosphate domain RD1_RS05770 e42a091266fe97e2a4dc575ab00104ca 162 SUPERFAMILY SSF50475 13 159 3.54E-32 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS05770 e42a091266fe97e2a4dc575ab00104ca 162 PANTHER PTHR13343:SF4 18 161 2.1E-22 T 23-04-2016 RD1_RS18410 c1d3f530319f891bbd3e8a4ee847cd08 141 Gene3D G3DSA:3.30.1550.10 2 72 1.0E-35 T 23-04-2016 IPR020784 Ribosomal protein L11, N-terminal RD1_RS18410 c1d3f530319f891bbd3e8a4ee847cd08 141 SUPERFAMILY SSF54747 3 73 2.22E-28 T 23-04-2016 IPR020784 Ribosomal protein L11, N-terminal RD1_RS18410 c1d3f530319f891bbd3e8a4ee847cd08 141 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 141 29.43 T 23-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RD1_RS18410 c1d3f530319f891bbd3e8a4ee847cd08 141 SUPERFAMILY SSF46906 69 140 1.31E-25 T 23-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RD1_RS18410 c1d3f530319f891bbd3e8a4ee847cd08 141 SMART SM00649 9 141 5.9E-79 T 23-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RD1_RS18410 c1d3f530319f891bbd3e8a4ee847cd08 141 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 8.4E-28 T 23-04-2016 IPR020784 Ribosomal protein L11, N-terminal RD1_RS18410 c1d3f530319f891bbd3e8a4ee847cd08 141 Gene3D G3DSA:1.10.10.250 73 141 8.4E-31 T 23-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RD1_RS18410 c1d3f530319f891bbd3e8a4ee847cd08 141 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 1.4E-25 T 23-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RD1_RS18410 c1d3f530319f891bbd3e8a4ee847cd08 141 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 3.0E-64 T 23-04-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 RD1_RS18410 c1d3f530319f891bbd3e8a4ee847cd08 141 PANTHER PTHR11661 1 140 8.7E-64 T 23-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RD1_RS18410 c1d3f530319f891bbd3e8a4ee847cd08 141 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 2.0E-16 T 23-04-2016 RD1_RS16360 513058910c7a4b6793e1b899a9d7ca66 212 PIRSF PIRSF000495 1 212 5.1E-64 T 23-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 RD1_RS16360 513058910c7a4b6793e1b899a9d7ca66 212 Gene3D G3DSA:3.40.50.880 4 210 4.1E-67 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS16360 513058910c7a4b6793e1b899a9d7ca66 212 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4 209 1.2E-58 T 23-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 RD1_RS16360 513058910c7a4b6793e1b899a9d7ca66 212 PANTHER PTHR21235 5 210 6.9E-72 T 23-04-2016 RD1_RS16360 513058910c7a4b6793e1b899a9d7ca66 212 Pfam PF00117 Glutamine amidotransferase class-I 57 208 3.2E-17 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RD1_RS16360 513058910c7a4b6793e1b899a9d7ca66 212 SUPERFAMILY SSF52317 4 202 1.78E-52 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS16360 513058910c7a4b6793e1b899a9d7ca66 212 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 2 210 32.271 T 23-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 RD1_RS16360 513058910c7a4b6793e1b899a9d7ca66 212 PANTHER PTHR21235:SF1 5 210 6.9E-72 T 23-04-2016 RD1_RS02555 75ead9e41ba79c887dccd6cd1ec15d8a 233 Gene3D G3DSA:1.10.10.10 132 232 3.0E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS02555 75ead9e41ba79c887dccd6cd1ec15d8a 233 SMART SM00448 6 116 2.6E-41 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS02555 75ead9e41ba79c887dccd6cd1ec15d8a 233 SMART SM00862 154 230 1.5E-16 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS02555 75ead9e41ba79c887dccd6cd1ec15d8a 233 PANTHER PTHR26402:SF292 6 233 5.3E-79 T 23-04-2016 RD1_RS02555 75ead9e41ba79c887dccd6cd1ec15d8a 233 SUPERFAMILY SSF46894 131 231 9.92E-22 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RD1_RS02555 75ead9e41ba79c887dccd6cd1ec15d8a 233 PANTHER PTHR26402 6 233 5.3E-79 T 23-04-2016 RD1_RS02555 75ead9e41ba79c887dccd6cd1ec15d8a 233 SUPERFAMILY SSF52172 6 145 3.7E-39 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS02555 75ead9e41ba79c887dccd6cd1ec15d8a 233 Pfam PF00072 Response regulator receiver domain 9 116 2.6E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS02555 75ead9e41ba79c887dccd6cd1ec15d8a 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 230 7.1E-21 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RD1_RS02555 75ead9e41ba79c887dccd6cd1ec15d8a 233 Gene3D G3DSA:3.40.50.2300 6 123 6.1E-39 T 23-04-2016 RD1_RS07065 2da87863c393c2e15e477a4fbb8f9038 641 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 32 628 9.2E-169 T 23-04-2016 IPR011853 TRAP transporter, 4TM/12TM fusion protein RD1_RS07065 2da87863c393c2e15e477a4fbb8f9038 641 PANTHER PTHR33362 17 626 5.5E-154 T 23-04-2016 RD1_RS07065 2da87863c393c2e15e477a4fbb8f9038 641 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 124 556 1.3E-82 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS07065 2da87863c393c2e15e477a4fbb8f9038 641 PANTHER PTHR33362:SF1 17 626 5.5E-154 T 23-04-2016 RD1_RS04890 e292c6891b58aa05b57389a3b86deb70 187 SUPERFAMILY SSF53254 1 165 1.35E-24 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RD1_RS04890 e292c6891b58aa05b57389a3b86deb70 187 Gene3D G3DSA:3.40.50.1240 1 186 4.9E-54 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RD1_RS04890 e292c6891b58aa05b57389a3b86deb70 187 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 17 163 1.0E-19 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RD1_RS00990 0750d7aa46e02c28b2e7c7f704d25cf1 237 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 7 171 7.6E-15 T 23-04-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 RD1_RS00990 0750d7aa46e02c28b2e7c7f704d25cf1 237 PANTHER PTHR31272 3 224 8.2E-22 T 23-04-2016 RD1_RS02235 fc7a51e327f7e99c9a8c0da156d66532 136 Pfam PF09722 Protein of unknown function (DUF2384) 83 134 5.4E-13 T 23-04-2016 IPR024467 Domain of unknown function DUF2384 RD1_RS02235 fc7a51e327f7e99c9a8c0da156d66532 136 ProDom PD080812 PLASMID Y4OB BMEII097 AGR_L_107P MLL2216 BMEII0977 ATU4831 21 130 2.0E-42 T 23-04-2016 IPR020358 Uncharacterised protein family Y4oB RD1_RS15095 979edea4dac14fb6094b5097430a34a2 406 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 133 406 1.9E-119 T 23-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 RD1_RS15095 979edea4dac14fb6094b5097430a34a2 406 PANTHER PTHR11993:SF10 14 401 2.3E-237 T 23-04-2016 RD1_RS15095 979edea4dac14fb6094b5097430a34a2 406 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 19 406 1.2E-172 T 23-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 RD1_RS15095 979edea4dac14fb6094b5097430a34a2 406 PANTHER PTHR11993 14 401 2.3E-237 T 23-04-2016 RD1_RS15095 979edea4dac14fb6094b5097430a34a2 406 Gene3D G3DSA:1.10.645.10 18 398 3.0E-64 T 23-04-2016 IPR029014 NiFe hydrogenase-like RD1_RS15095 979edea4dac14fb6094b5097430a34a2 406 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 8 406 48.042 T 23-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 RD1_RS15095 979edea4dac14fb6094b5097430a34a2 406 SUPERFAMILY SSF56762 29 406 1.06E-135 T 23-04-2016 IPR029014 NiFe hydrogenase-like RD1_RS15095 979edea4dac14fb6094b5097430a34a2 406 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 56 67 - T 23-04-2016 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 RD1_RS15185 2a6ef96ce727b8bdcd05a45d51287439 606 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 606 5.7E-234 T 23-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 RD1_RS15185 2a6ef96ce727b8bdcd05a45d51287439 606 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 606 38.057 T 23-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 RD1_RS15185 2a6ef96ce727b8bdcd05a45d51287439 606 Gene3D G3DSA:3.60.20.10 2 239 1.5E-70 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS15185 2a6ef96ce727b8bdcd05a45d51287439 606 Pfam PF01380 SIS domain 290 413 2.7E-25 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RD1_RS15185 2a6ef96ce727b8bdcd05a45d51287439 606 Pfam PF01380 SIS domain 457 588 2.0E-23 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RD1_RS15185 2a6ef96ce727b8bdcd05a45d51287439 606 SUPERFAMILY SSF56235 2 233 1.89E-72 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS15185 2a6ef96ce727b8bdcd05a45d51287439 606 Gene3D G3DSA:3.40.50.10490 243 437 5.8E-55 T 23-04-2016 RD1_RS15185 2a6ef96ce727b8bdcd05a45d51287439 606 PANTHER PTHR10937:SF0 1 606 2.5E-299 T 23-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 RD1_RS15185 2a6ef96ce727b8bdcd05a45d51287439 606 Gene3D G3DSA:3.40.50.10490 438 606 8.2E-67 T 23-04-2016 RD1_RS15185 2a6ef96ce727b8bdcd05a45d51287439 606 PANTHER PTHR10937 1 606 2.5E-299 T 23-04-2016 RD1_RS15185 2a6ef96ce727b8bdcd05a45d51287439 606 SUPERFAMILY SSF53697 244 606 3.09E-105 T 23-04-2016 RD1_RS15185 2a6ef96ce727b8bdcd05a45d51287439 606 Pfam PF13522 Glutamine amidotransferase domain 66 191 2.3E-18 T 23-04-2016 RD1_RS17395 d931c4bb3b71e3b85b7bf818db930e8a 131 Gene3D G3DSA:1.20.1290.10 1 129 2.2E-37 T 23-04-2016 IPR029032 AhpD-like RD1_RS17395 d931c4bb3b71e3b85b7bf818db930e8a 131 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 60 107 1.3E-15 T 23-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RD1_RS17395 d931c4bb3b71e3b85b7bf818db930e8a 131 Pfam PF02627 Carboxymuconolactone decarboxylase family 43 123 4.5E-18 T 23-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RD1_RS17395 d931c4bb3b71e3b85b7bf818db930e8a 131 PANTHER PTHR35446 1 129 6.4E-34 T 23-04-2016 RD1_RS17395 d931c4bb3b71e3b85b7bf818db930e8a 131 SUPERFAMILY SSF69118 1 129 1.31E-36 T 23-04-2016 IPR029032 AhpD-like RD1_RS17500 dccf909c34aa422fbc0a9b627c73fa6e 399 SUPERFAMILY SSF53790 6 207 1.83E-39 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS17500 dccf909c34aa422fbc0a9b627c73fa6e 399 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 7 186 6.8E-16 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS17500 dccf909c34aa422fbc0a9b627c73fa6e 399 PANTHER PTHR14741 222 353 5.3E-41 T 23-04-2016 RD1_RS17500 dccf909c34aa422fbc0a9b627c73fa6e 399 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 232 351 9.0E-31 T 23-04-2016 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.196|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 RD1_RS17500 dccf909c34aa422fbc0a9b627c73fa6e 399 Gene3D G3DSA:3.40.50.150 231 367 5.0E-15 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS17500 dccf909c34aa422fbc0a9b627c73fa6e 399 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 9 202 6.6E-34 T 23-04-2016 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 RD1_RS17500 dccf909c34aa422fbc0a9b627c73fa6e 399 Gene3D G3DSA:3.30.950.10 109 207 8.8E-15 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RD1_RS17500 dccf909c34aa422fbc0a9b627c73fa6e 399 SUPERFAMILY SSF53335 211 367 1.06E-23 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS17500 dccf909c34aa422fbc0a9b627c73fa6e 399 PANTHER PTHR14741:SF34 222 353 5.3E-41 T 23-04-2016 RD1_RS17500 dccf909c34aa422fbc0a9b627c73fa6e 399 Gene3D G3DSA:3.40.1010.10 5 108 1.1E-19 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RD1_RS17500 dccf909c34aa422fbc0a9b627c73fa6e 399 PIRSF PIRSF036428 2 399 1.3E-119 T 23-04-2016 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|KEGG: 00860+2.1.1.132|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00148 RD1_RS00755 dacafaa49a449fa31b13b0ebde5c42d7 93 ProDom PD351196 CJ1463 JHP0230 HP0245 16 90 4.0E-4 T 23-04-2016 RD1_RS00755 dacafaa49a449fa31b13b0ebde5c42d7 93 Pfam PF10135 Rod binding protein 37 85 9.4E-10 T 23-04-2016 IPR019301 Flagellar protein FlgJ, N-terminal RD1_RS15675 59e2af35e5c65aff0546944826b135d4 44 Gene3D G3DSA:1.20.5.160 1 42 2.9E-23 T 23-04-2016 IPR012422 Cytochrome c oxidase, subunit IV, bacterial aa3 type KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 RD1_RS15675 59e2af35e5c65aff0546944826b135d4 44 Pfam PF07835 Bacterial aa3 type cytochrome c oxidase subunit IV 4 43 8.5E-18 T 23-04-2016 IPR012422 Cytochrome c oxidase, subunit IV, bacterial aa3 type KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 RD1_RS15675 59e2af35e5c65aff0546944826b135d4 44 SUPERFAMILY SSF81469 2 43 2.62E-16 T 23-04-2016 IPR012422 Cytochrome c oxidase, subunit IV, bacterial aa3 type KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 RD1_RS13565 854c284ba0b88742397e33acb2585563 503 PANTHER PTHR35342 1 501 2.0E-207 T 23-04-2016 RD1_RS13565 854c284ba0b88742397e33acb2585563 503 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 18 439 3.1E-128 T 23-04-2016 IPR002823 Protein of unknown function DUF112, transmembrane RD1_RS13565 854c284ba0b88742397e33acb2585563 503 PANTHER PTHR35342:SF2 1 501 2.0E-207 T 23-04-2016 RD1_RS16900 11f0b9d618a5301a54bcfff0b8e25b91 397 Gene3D G3DSA:3.20.20.140 68 345 5.6E-39 T 23-04-2016 RD1_RS16900 11f0b9d618a5301a54bcfff0b8e25b91 397 PANTHER PTHR22642 1 397 4.5E-133 T 23-04-2016 RD1_RS16900 11f0b9d618a5301a54bcfff0b8e25b91 397 PANTHER PTHR22642:SF1 1 397 4.5E-133 T 23-04-2016 RD1_RS16900 11f0b9d618a5301a54bcfff0b8e25b91 397 Hamap MF_00372 Imidazolonepropionase [hutI]. 2 397 40.731 T 23-04-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RD1_RS16900 11f0b9d618a5301a54bcfff0b8e25b91 397 Gene3D G3DSA:2.30.40.10 2 67 2.1E-12 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS16900 11f0b9d618a5301a54bcfff0b8e25b91 397 SUPERFAMILY SSF51338 360 396 5.5E-30 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS16900 11f0b9d618a5301a54bcfff0b8e25b91 397 SUPERFAMILY SSF51338 2 60 5.5E-30 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS16900 11f0b9d618a5301a54bcfff0b8e25b91 397 TIGRFAM TIGR01224 hutI: imidazolonepropionase 20 397 7.9E-141 T 23-04-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RD1_RS16900 11f0b9d618a5301a54bcfff0b8e25b91 397 Gene3D G3DSA:2.30.40.10 346 395 1.7E-6 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS16900 11f0b9d618a5301a54bcfff0b8e25b91 397 SUPERFAMILY SSF51556 60 357 3.74E-82 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS16900 11f0b9d618a5301a54bcfff0b8e25b91 397 Pfam PF07969 Amidohydrolase family 214 373 1.0E-10 T 23-04-2016 IPR013108 Amidohydrolase 3 RD1_RS14145 a58921f64385a32ccabe9226c056a052 333 Pfam PF02653 Branched-chain amino acid transport system / permease component 63 317 9.7E-41 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS14145 a58921f64385a32ccabe9226c056a052 333 PANTHER PTHR32196 20 323 2.9E-83 T 23-04-2016 RD1_RS14145 a58921f64385a32ccabe9226c056a052 333 PANTHER PTHR32196:SF24 20 323 2.9E-83 T 23-04-2016 RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 Gene3D G3DSA:3.30.2090.10 186 266 6.0E-8 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 SUPERFAMILY SSF82714 738 809 3.66E-6 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 SUPERFAMILY SSF82866 299 490 3.53E-36 T 23-04-2016 RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 Gene3D G3DSA:1.10.3850.10 817 1031 9.2E-46 T 23-04-2016 RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 PANTHER PTHR32063 9 1078 4.9E-191 T 23-04-2016 RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 Pfam PF00873 AcrB/AcrD/AcrF family 13 1030 3.2E-147 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 PRINTS PR00702 Acriflavin resistance protein family signature 19 43 4.7E-17 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 4.7E-17 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 4.7E-17 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 PRINTS PR00702 Acriflavin resistance protein family signature 440 463 4.7E-17 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 PRINTS PR00702 Acriflavin resistance protein family signature 47 65 4.7E-17 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 Gene3D G3DSA:1.20.1640.10 288 499 9.8E-45 T 23-04-2016 RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 SUPERFAMILY SSF82693 52 141 2.67E-14 T 23-04-2016 RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 SUPERFAMILY SSF82866 811 1034 1.2E-37 T 23-04-2016 RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 Gene3D G3DSA:3.30.70.1430 52 143 4.9E-13 T 23-04-2016 RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 SUPERFAMILY SSF82714 186 266 8.24E-8 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS15710 3e92e0054208829286b10d34d32eedc2 1129 Gene3D G3DSA:3.30.2090.10 738 809 2.4E-5 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 SMART SM00490 538 619 4.5E-26 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 Gene3D G3DSA:3.40.50.300 1494 1559 1.1E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 Gene3D G3DSA:3.40.50.300 1302 1416 1.1E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 Pfam PF00270 DEAD/DEAH box helicase 298 468 2.8E-21 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 Pfam PF00580 UvrD/REP helicase N-terminal domain 1090 1182 1.0E-16 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 Pfam PF00580 UvrD/REP helicase N-terminal domain 1188 1288 8.1E-14 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 Gene3D G3DSA:3.40.50.300 275 477 1.1E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 Gene3D G3DSA:3.40.50.300 1089 1301 5.6E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 Pfam PF13538 UvrD-like helicase C-terminal domain 1504 1554 9.6E-12 T 23-04-2016 IPR027785 UvrD-like helicase C-terminal domain RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 SMART SM00487 1067 1284 0.1 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 SMART SM00487 291 500 7.3E-27 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 SUPERFAMILY SSF52540 1080 1560 4.82E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 PANTHER PTHR13710:SF81 1668 1681 6.9E-124 T 23-04-2016 RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 PANTHER PTHR13710:SF81 297 638 6.9E-124 T 23-04-2016 RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 Pfam PF00271 Helicase conserved C-terminal domain 522 617 1.2E-16 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 PANTHER PTHR13710 1668 1681 6.9E-124 T 23-04-2016 RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 PANTHER PTHR13710 297 638 6.9E-124 T 23-04-2016 RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 297 636 5.0E-94 T 23-04-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 SUPERFAMILY SSF52540 339 636 4.27E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16295 3287d50b67a67d29f386283933514a57 1699 Gene3D G3DSA:3.40.50.300 491 635 1.5E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15215 fd38220b76021dcf532aef2d6c9fb2fe 387 Gene3D G3DSA:3.40.630.10 327 387 1.8E-54 T 23-04-2016 RD1_RS15215 fd38220b76021dcf532aef2d6c9fb2fe 387 Gene3D G3DSA:3.40.630.10 7 185 1.8E-54 T 23-04-2016 RD1_RS15215 fd38220b76021dcf532aef2d6c9fb2fe 387 Pfam PF07687 Peptidase dimerisation domain 174 286 8.0E-16 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS15215 fd38220b76021dcf532aef2d6c9fb2fe 387 Pfam PF01546 Peptidase family M20/M25/M40 70 383 3.8E-32 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RD1_RS15215 fd38220b76021dcf532aef2d6c9fb2fe 387 Gene3D G3DSA:3.30.70.360 186 289 1.0E-18 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS15215 fd38220b76021dcf532aef2d6c9fb2fe 387 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 10 382 2.0E-114 T 23-04-2016 IPR010169 Acetylornithine deacetylase (ArgE) GO:0005737|GO:0006526|GO:0008270|GO:0008777|GO:0050897 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154|UniPathway: UPA00068 RD1_RS15215 fd38220b76021dcf532aef2d6c9fb2fe 387 PANTHER PTHR11014 1 387 1.0E-69 T 23-04-2016 RD1_RS15215 fd38220b76021dcf532aef2d6c9fb2fe 387 SUPERFAMILY SSF53187 308 386 1.77E-54 T 23-04-2016 RD1_RS15215 fd38220b76021dcf532aef2d6c9fb2fe 387 SUPERFAMILY SSF53187 7 176 1.77E-54 T 23-04-2016 RD1_RS15215 fd38220b76021dcf532aef2d6c9fb2fe 387 SUPERFAMILY SSF55031 180 288 9.27E-18 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS15215 fd38220b76021dcf532aef2d6c9fb2fe 387 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 103 140 - T 23-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RD1_RS15215 fd38220b76021dcf532aef2d6c9fb2fe 387 PANTHER PTHR11014:SF80 1 387 1.0E-69 T 23-04-2016 RD1_RS04570 fcfc64f192b3d599037d55ae5e9c0dd9 400 SUPERFAMILY SSF51395 3 352 1.7E-85 T 23-04-2016 RD1_RS04570 fcfc64f192b3d599037d55ae5e9c0dd9 400 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 15 324 9.4E-44 T 23-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RD1_RS04570 fcfc64f192b3d599037d55ae5e9c0dd9 400 Gene3D G3DSA:3.20.20.70 2 331 4.9E-89 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS04570 fcfc64f192b3d599037d55ae5e9c0dd9 400 PANTHER PTHR22893 5 327 3.5E-88 T 23-04-2016 RD1_RS04570 fcfc64f192b3d599037d55ae5e9c0dd9 400 PANTHER PTHR22893:SF6 5 327 3.5E-88 T 23-04-2016 RD1_RS16175 f519d5c6086d671901cdab5886c06e98 282 Pfam PF00892 EamA-like transporter family 144 272 9.4E-16 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS16175 f519d5c6086d671901cdab5886c06e98 282 PANTHER PTHR32322:SF9 9 276 5.0E-29 T 23-04-2016 RD1_RS16175 f519d5c6086d671901cdab5886c06e98 282 PANTHER PTHR32322 9 276 5.0E-29 T 23-04-2016 RD1_RS16175 f519d5c6086d671901cdab5886c06e98 282 SUPERFAMILY SSF103481 179 274 3.14E-11 T 23-04-2016 RD1_RS16175 f519d5c6086d671901cdab5886c06e98 282 SUPERFAMILY SSF103481 40 136 3.27E-6 T 23-04-2016 RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 SUPERFAMILY SSF51412 214 472 3.01E-120 T 23-04-2016 RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 SUPERFAMILY SSF51412 2 88 3.01E-120 T 23-04-2016 RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 SMART SM00116 155 203 0.0083 T 23-04-2016 IPR000644 CBS domain RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 SMART SM00116 94 142 2.7E-8 T 23-04-2016 IPR000644 CBS domain RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 6 481 79.958 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 292 304 - T 23-04-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 PIRSF PIRSF000130 1 482 6.0E-194 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 PANTHER PTHR11911:SF6 1 279 6.6E-216 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 PANTHER PTHR11911:SF6 297 480 6.6E-216 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 6 468 9.9E-154 T 23-04-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 PANTHER PTHR11911 1 279 6.6E-216 T 23-04-2016 RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 PANTHER PTHR11911 297 480 6.6E-216 T 23-04-2016 RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 SMART SM01240 5 468 2.9E-302 T 23-04-2016 RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 Pfam PF00571 CBS domain 155 197 1.5E-4 T 23-04-2016 IPR000644 CBS domain RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 Pfam PF00571 CBS domain 94 140 1.8E-9 T 23-04-2016 IPR000644 CBS domain RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 SUPERFAMILY SSF54631 93 202 2.53E-24 T 23-04-2016 RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 Gene3D G3DSA:3.20.20.70 3 480 1.1E-188 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS12470 87a4ef86817fac664150a6ded0b7e0ee 482 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 6 449 5.7E-180 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RD1_RS08115 6687a13bb045e3394703d48a95138f29 160 PANTHER PTHR12418 16 159 3.2E-36 T 23-04-2016 RD1_RS08115 6687a13bb045e3394703d48a95138f29 160 PANTHER PTHR12418:SF25 16 159 3.2E-36 T 23-04-2016 RD1_RS08115 6687a13bb045e3394703d48a95138f29 160 SUPERFAMILY SSF54637 8 155 1.71E-34 T 23-04-2016 IPR029069 HotDog domain RD1_RS08115 6687a13bb045e3394703d48a95138f29 160 Pfam PF03061 Thioesterase superfamily 70 144 1.2E-11 T 23-04-2016 IPR006683 Thioesterase domain RD1_RS08115 6687a13bb045e3394703d48a95138f29 160 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 39 155 1.5E-16 T 23-04-2016 IPR003736 Phenylacetic acid degradation-related domain RD1_RS08115 6687a13bb045e3394703d48a95138f29 160 Gene3D G3DSA:3.10.129.10 20 159 5.5E-43 T 23-04-2016 IPR029069 HotDog domain RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PANTHER PTHR22912 7 449 2.1E-130 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 Gene3D G3DSA:3.50.50.60 138 326 3.1E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 SUPERFAMILY SSF51905 4 361 1.05E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PIRSF PIRSF000350 1 451 1.1E-93 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 398 413 2.6E-57 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 136 145 2.6E-57 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.6E-57 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 334 355 2.6E-57 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 256 270 2.6E-57 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 2.6E-57 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 2.6E-57 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 2.6E-57 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 420 440 2.6E-57 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 338 444 3.1E-25 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 23-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 SUPERFAMILY SSF55424 336 453 8.08E-32 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PANTHER PTHR22912:SF29 7 449 2.1E-130 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 318 3.9E-58 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 Gene3D G3DSA:3.50.50.60 6 137 1.2E-28 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 Gene3D G3DSA:3.30.390.30 334 448 5.2E-34 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 1.3E-27 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 1.3E-27 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 255 271 1.3E-27 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.3E-27 T 23-04-2016 RD1_RS06775 709335e741506ea8f6fef44e7170b5a9 472 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 133 151 1.3E-27 T 23-04-2016 RD1_RS02405 f703ddf99cd83ff7f8dd0421b66cd831 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 291 6.3E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS02405 f703ddf99cd83ff7f8dd0421b66cd831 297 SUPERFAMILY SSF161098 59 285 6.54E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS02405 f703ddf99cd83ff7f8dd0421b66cd831 297 PANTHER PTHR30193:SF29 12 296 4.9E-118 T 23-04-2016 RD1_RS02405 f703ddf99cd83ff7f8dd0421b66cd831 297 Gene3D G3DSA:1.10.3720.10 65 290 4.8E-56 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS02405 f703ddf99cd83ff7f8dd0421b66cd831 297 PANTHER PTHR30193 12 296 4.9E-118 T 23-04-2016 RD1_RS01930 fae635d8c9fd623ecbbb229501de417f 110 SUPERFAMILY SSF47226 1 102 5.36E-20 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RD1_RS01930 fae635d8c9fd623ecbbb229501de417f 110 Pfam PF01627 Hpt domain 21 94 3.1E-10 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RD1_RS01930 fae635d8c9fd623ecbbb229501de417f 110 Gene3D G3DSA:1.20.120.160 1 100 1.6E-21 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RD1_RS05115 f39d3978391607533ab7ca372f048498 600 Pfam PF00474 Sodium:solute symporter family 33 303 1.2E-33 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RD1_RS05115 f39d3978391607533ab7ca372f048498 600 Pfam PF00474 Sodium:solute symporter family 401 516 1.9E-15 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RD1_RS05115 f39d3978391607533ab7ca372f048498 600 PANTHER PTHR11819:SF159 364 594 2.2E-186 T 23-04-2016 RD1_RS05115 f39d3978391607533ab7ca372f048498 600 PANTHER PTHR11819:SF159 4 312 2.2E-186 T 23-04-2016 RD1_RS05115 f39d3978391607533ab7ca372f048498 600 PANTHER PTHR11819 364 594 2.2E-186 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RD1_RS05115 f39d3978391607533ab7ca372f048498 600 PANTHER PTHR11819 4 312 2.2E-186 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RD1_RS05115 f39d3978391607533ab7ca372f048498 600 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 498 518 - T 23-04-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 RD1_RS05115 f39d3978391607533ab7ca372f048498 600 TIGRFAM TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily 8 591 1.9E-246 T 23-04-2016 IPR019899 Sodium/solute symporter, VC2705 subfamily RD1_RS00865 23d848ffb16db3224aed19ecb4eab770 275 PANTHER PTHR19136 17 274 9.2E-115 T 23-04-2016 RD1_RS00865 23d848ffb16db3224aed19ecb4eab770 275 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 5 71 7.4E-24 T 23-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RD1_RS00865 23d848ffb16db3224aed19ecb4eab770 275 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 6 274 6.0E-128 T 23-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RD1_RS00865 23d848ffb16db3224aed19ecb4eab770 275 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 137 170 0.0011 T 23-04-2016 IPR001451 Hexapeptide repeat RD1_RS00865 23d848ffb16db3224aed19ecb4eab770 275 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 179 214 5.1E-11 T 23-04-2016 IPR001451 Hexapeptide repeat RD1_RS00865 23d848ffb16db3224aed19ecb4eab770 275 Gene3D G3DSA:1.10.166.10 4 72 9.7E-27 T 23-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RD1_RS00865 23d848ffb16db3224aed19ecb4eab770 275 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 138 166 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RD1_RS00865 23d848ffb16db3224aed19ecb4eab770 275 PANTHER PTHR19136:SF52 17 274 9.2E-115 T 23-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RD1_RS00865 23d848ffb16db3224aed19ecb4eab770 275 Gene3D G3DSA:2.160.10.10 93 258 2.0E-58 T 23-04-2016 RD1_RS00865 23d848ffb16db3224aed19ecb4eab770 275 SUPERFAMILY SSF51161 5 258 2.36E-66 T 23-04-2016 IPR011004 Trimeric LpxA-like RD1_RS00865 23d848ffb16db3224aed19ecb4eab770 275 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 3 275 54.735 T 23-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RD1_RS08745 4d62f4f032500d5338e764d0a86901d5 434 Pfam PF01266 FAD dependent oxidoreductase 38 388 7.4E-56 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS08745 4d62f4f032500d5338e764d0a86901d5 434 Gene3D G3DSA:3.50.50.60 352 395 1.3E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08745 4d62f4f032500d5338e764d0a86901d5 434 Gene3D G3DSA:3.50.50.60 30 127 1.3E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08745 4d62f4f032500d5338e764d0a86901d5 434 Gene3D G3DSA:3.50.50.60 181 260 1.3E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08745 4d62f4f032500d5338e764d0a86901d5 434 PANTHER PTHR13847 1 431 3.3E-117 T 23-04-2016 RD1_RS08745 4d62f4f032500d5338e764d0a86901d5 434 PANTHER PTHR13847:SF210 1 431 3.3E-117 T 23-04-2016 RD1_RS08745 4d62f4f032500d5338e764d0a86901d5 434 SUPERFAMILY SSF51905 185 320 1.51E-49 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08745 4d62f4f032500d5338e764d0a86901d5 434 SUPERFAMILY SSF51905 12 130 1.51E-49 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS01585 15fb143c315564b5073431ced35f9d11 622 Pfam PF02914 Bacteriophage Mu transposase 215 422 3.1E-17 T 23-04-2016 IPR004189 Bacteriophage Mu, transposase GO:0003677|GO:0004803|GO:0006313|GO:0015074 RD1_RS01585 15fb143c315564b5073431ced35f9d11 622 Gene3D G3DSA:1.10.10.60 132 201 6.0E-9 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS01585 15fb143c315564b5073431ced35f9d11 622 Pfam PF09039 Mu DNA binding, I gamma subdomain 110 214 1.6E-8 T 23-04-2016 IPR015126 Mu DNA binding, I gamma subdomain RD1_RS01585 15fb143c315564b5073431ced35f9d11 622 Gene3D G3DSA:3.30.420.10 207 437 1.9E-41 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS01585 15fb143c315564b5073431ced35f9d11 622 SUPERFAMILY SSF53098 219 430 5.31E-44 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS01585 15fb143c315564b5073431ced35f9d11 622 ProDom PD223702 DNA TRANSPOSASE DNA-BINDING TRANSPOSABLE INTEGRATION ELEMENT RECOMBINATION TRANSPOSASE EXCISION TRANSPOSITION 224 430 1.0E-14 T 23-04-2016 RD1_RS07485 39ad7731ae607de64a4260cfd8a7c2ba 185 Pfam PF07298 NnrU protein 4 182 1.6E-44 T 23-04-2016 IPR009915 NnrU domain RD1_RS11545 5b58e1b335167480f8500683a5693011 165 ProSitePatterns PS00519 AsnC-type HTH domain signature. 33 59 - T 23-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RD1_RS11545 5b58e1b335167480f8500683a5693011 165 Pfam PF01037 Lrp/AsnC ligand binding domain 81 154 3.1E-21 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS11545 5b58e1b335167480f8500683a5693011 165 Gene3D G3DSA:3.30.70.920 68 160 1.4E-32 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS11545 5b58e1b335167480f8500683a5693011 165 Gene3D G3DSA:1.10.10.10 12 66 6.3E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11545 5b58e1b335167480f8500683a5693011 165 PANTHER PTHR30154 7 160 2.0E-57 T 23-04-2016 RD1_RS11545 5b58e1b335167480f8500683a5693011 165 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 42 61 1.1E-17 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS11545 5b58e1b335167480f8500683a5693011 165 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 15 31 1.1E-17 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS11545 5b58e1b335167480f8500683a5693011 165 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 42 1.1E-17 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS11545 5b58e1b335167480f8500683a5693011 165 SUPERFAMILY SSF54909 75 160 2.82E-20 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS11545 5b58e1b335167480f8500683a5693011 165 SMART SM00344 15 124 5.0E-46 T 23-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RD1_RS11545 5b58e1b335167480f8500683a5693011 165 PANTHER PTHR30154:SF0 7 160 2.0E-57 T 23-04-2016 RD1_RS11545 5b58e1b335167480f8500683a5693011 165 SUPERFAMILY SSF46785 11 105 4.15E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11545 5b58e1b335167480f8500683a5693011 165 Pfam PF13412 Winged helix-turn-helix DNA-binding 16 61 2.1E-16 T 23-04-2016 RD1_RS04375 2a9df8db019d1c48055153626916191d 294 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 201 219 - T 23-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RD1_RS04375 2a9df8db019d1c48055153626916191d 294 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 117 283 9.3E-61 T 23-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RD1_RS04375 2a9df8db019d1c48055153626916191d 294 Hamap MF_01974 Methionine aminopeptidase [map]. 18 284 36.241 T 23-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RD1_RS04375 2a9df8db019d1c48055153626916191d 294 SUPERFAMILY SSF55920 19 288 1.2E-78 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS04375 2a9df8db019d1c48055153626916191d 294 PANTHER PTHR10804 13 99 4.2E-109 T 23-04-2016 RD1_RS04375 2a9df8db019d1c48055153626916191d 294 PANTHER PTHR10804 117 285 4.2E-109 T 23-04-2016 RD1_RS04375 2a9df8db019d1c48055153626916191d 294 Gene3D G3DSA:3.90.230.10 22 285 1.5E-84 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS04375 2a9df8db019d1c48055153626916191d 294 Pfam PF00557 Metallopeptidase family M24 28 275 1.4E-44 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS04375 2a9df8db019d1c48055153626916191d 294 PANTHER PTHR10804:SF82 13 99 4.2E-109 T 23-04-2016 RD1_RS04375 2a9df8db019d1c48055153626916191d 294 PANTHER PTHR10804:SF82 117 285 4.2E-109 T 23-04-2016 RD1_RS04375 2a9df8db019d1c48055153626916191d 294 PRINTS PR00599 Methionine aminopeptidase-1 signature 83 96 8.3E-7 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RD1_RS04375 2a9df8db019d1c48055153626916191d 294 PRINTS PR00599 Methionine aminopeptidase-1 signature 226 238 8.3E-7 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RD1_RS01015 f2cf56edc94d18aa8a46f1747c2e1ef6 280 PANTHER PTHR39193 26 279 5.8E-41 T 23-04-2016 RD1_RS01015 f2cf56edc94d18aa8a46f1747c2e1ef6 280 Gene3D G3DSA:2.60.120.10 25 116 1.6E-14 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS01015 f2cf56edc94d18aa8a46f1747c2e1ef6 280 Gene3D G3DSA:2.60.120.10 117 269 7.4E-45 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS01015 f2cf56edc94d18aa8a46f1747c2e1ef6 280 SUPERFAMILY SSF51182 24 248 6.53E-39 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS01015 f2cf56edc94d18aa8a46f1747c2e1ef6 280 PANTHER PTHR39193:SF1 26 279 5.8E-41 T 23-04-2016 RD1_RS01015 f2cf56edc94d18aa8a46f1747c2e1ef6 280 Pfam PF04962 KduI/IolB family 11 264 3.6E-73 T 23-04-2016 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 RD1_RS01015 f2cf56edc94d18aa8a46f1747c2e1ef6 280 PIRSF PIRSF036628 5 270 1.1E-43 T 23-04-2016 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30|UniPathway: UPA00076 RD1_RS17690 ca666d40ee4ad171959cd16c0993ba17 346 Pfam PF13416 Bacterial extracellular solute-binding protein 46 306 7.2E-37 T 23-04-2016 RD1_RS17690 ca666d40ee4ad171959cd16c0993ba17 346 Gene3D G3DSA:3.40.190.10 23 128 3.5E-9 T 23-04-2016 RD1_RS17690 ca666d40ee4ad171959cd16c0993ba17 346 PANTHER PTHR30222 8 343 2.1E-83 T 23-04-2016 RD1_RS17690 ca666d40ee4ad171959cd16c0993ba17 346 SUPERFAMILY SSF53850 22 344 2.03E-60 T 23-04-2016 RD1_RS17690 ca666d40ee4ad171959cd16c0993ba17 346 Gene3D G3DSA:3.40.190.10 129 282 2.3E-33 T 23-04-2016 RD1_RS17690 ca666d40ee4ad171959cd16c0993ba17 346 PANTHER PTHR30222:SF2 8 343 2.1E-83 T 23-04-2016 RD1_RS16670 fa08d5204bf49ee42b5da22ea6c343c7 344 SUPERFAMILY SSF50129 3 175 4.41E-47 T 23-04-2016 IPR011032 GroES-like RD1_RS16670 fa08d5204bf49ee42b5da22ea6c343c7 344 Gene3D G3DSA:3.90.180.10 3 169 6.9E-41 T 23-04-2016 IPR011032 GroES-like RD1_RS16670 fa08d5204bf49ee42b5da22ea6c343c7 344 PANTHER PTHR11695 13 330 2.1E-105 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS16670 fa08d5204bf49ee42b5da22ea6c343c7 344 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 135 2.6E-23 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RD1_RS16670 fa08d5204bf49ee42b5da22ea6c343c7 344 Pfam PF00107 Zinc-binding dehydrogenase 177 304 2.4E-18 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RD1_RS16670 fa08d5204bf49ee42b5da22ea6c343c7 344 SUPERFAMILY SSF51735 140 309 9.79E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS16670 fa08d5204bf49ee42b5da22ea6c343c7 344 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 RD1_RS16670 fa08d5204bf49ee42b5da22ea6c343c7 344 SMART SM00829 11 334 2.2E-4 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RD1_RS16670 fa08d5204bf49ee42b5da22ea6c343c7 344 Gene3D G3DSA:3.40.50.720 170 289 1.6E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS16670 fa08d5204bf49ee42b5da22ea6c343c7 344 PANTHER PTHR11695:SF451 13 330 2.1E-105 T 23-04-2016 RD1_RS13920 40fa628340742665221b457b51cbb5fc 185 TIGRFAM TIGR01543 proheadase_HK97: phage prohead protease, HK97 family 25 158 4.5E-33 T 23-04-2016 IPR006433 Prohead protease RD1_RS13920 40fa628340742665221b457b51cbb5fc 185 Gene3D G3DSA:3.20.16.10 26 149 6.3E-5 T 23-04-2016 RD1_RS13920 40fa628340742665221b457b51cbb5fc 185 SUPERFAMILY SSF50789 26 142 1.27E-7 T 23-04-2016 RD1_RS13920 40fa628340742665221b457b51cbb5fc 185 Pfam PF04586 Caudovirus prohead serine protease 22 161 7.9E-33 T 23-04-2016 IPR006433 Prohead protease RD1_RS12790 7702422dfba39133a65b6b0b90b208f2 289 PANTHER PTHR34383 25 266 6.6E-111 T 23-04-2016 RD1_RS12790 7702422dfba39133a65b6b0b90b208f2 289 Gene3D G3DSA:3.40.50.300 22 276 1.5E-98 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12790 7702422dfba39133a65b6b0b90b208f2 289 SUPERFAMILY SSF52540 77 263 5.32E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12790 7702422dfba39133a65b6b0b90b208f2 289 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 43 271 1.9E-111 T 23-04-2016 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 RD1_RS12790 7702422dfba39133a65b6b0b90b208f2 289 PIRSF PIRSF028756 12 281 8.3E-109 T 23-04-2016 IPR016898 Polyphosphate kinase 2 RD1_RS12790 7702422dfba39133a65b6b0b90b208f2 289 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 44 269 2.1E-95 T 23-04-2016 IPR022488 Polyphosphate kinase-2-related RD1_RS12790 7702422dfba39133a65b6b0b90b208f2 289 PANTHER PTHR34383:SF1 25 266 6.6E-111 T 23-04-2016 RD1_RS11635 d547c5edf20e9e45812e6590bb6d2489 94 Pfam PF12096 Protein of unknown function (DUF3572) 5 87 1.4E-31 T 23-04-2016 IPR021955 Protein of unknown function DUF3572 RD1_RS09610 c0b189b145c9686485479187a408e219 151 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 114 120 - T 23-04-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 RD1_RS09610 c0b189b145c9686485479187a408e219 151 Gene3D G3DSA:1.10.10.10 65 146 8.6E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS09610 c0b189b145c9686485479187a408e219 151 SUPERFAMILY SSF53155 1 70 9.81E-8 T 23-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 RD1_RS09610 c0b189b145c9686485479187a408e219 151 PANTHER PTHR10815 25 146 2.3E-37 T 23-04-2016 RD1_RS09610 c0b189b145c9686485479187a408e219 151 SUPERFAMILY SSF46767 65 145 1.44E-27 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RD1_RS09610 c0b189b145c9686485479187a408e219 151 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 67 144 1.4E-24 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RD1_RS09610 c0b189b145c9686485479187a408e219 151 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 67 145 8.7E-28 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RD1_RS09610 c0b189b145c9686485479187a408e219 151 PANTHER PTHR10815:SF5 25 146 2.3E-37 T 23-04-2016 RD1_RS19015 91eb5220a304d22b795758e60ff57cfa 314 PANTHER PTHR37418 9 122 1.8E-77 T 23-04-2016 RD1_RS19015 91eb5220a304d22b795758e60ff57cfa 314 PANTHER PTHR37418 145 309 1.8E-77 T 23-04-2016 RD1_RS19015 91eb5220a304d22b795758e60ff57cfa 314 PANTHER PTHR37418:SF2 9 122 1.8E-77 T 23-04-2016 RD1_RS19015 91eb5220a304d22b795758e60ff57cfa 314 PANTHER PTHR37418:SF2 145 309 1.8E-77 T 23-04-2016 RD1_RS19015 91eb5220a304d22b795758e60ff57cfa 314 Gene3D G3DSA:3.20.20.70 10 308 2.0E-108 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS19015 91eb5220a304d22b795758e60ff57cfa 314 Pfam PF05853 beta-keto acid cleavage enzyme 10 306 1.5E-104 T 23-04-2016 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24|UniPathway: UPA00870 RD1_RS07585 9a75b0b6ae6609bc83861386becaf047 511 Pfam PF13538 UvrD-like helicase C-terminal domain 419 477 5.4E-21 T 23-04-2016 IPR027785 UvrD-like helicase C-terminal domain RD1_RS07585 9a75b0b6ae6609bc83861386becaf047 511 Pfam PF13604 AAA domain 40 276 2.1E-25 T 23-04-2016 RD1_RS07585 9a75b0b6ae6609bc83861386becaf047 511 SUPERFAMILY SSF52540 419 476 3.44E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07585 9a75b0b6ae6609bc83861386becaf047 511 SUPERFAMILY SSF52540 45 390 3.44E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07585 9a75b0b6ae6609bc83861386becaf047 511 Gene3D G3DSA:3.40.50.300 187 257 3.6E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07585 9a75b0b6ae6609bc83861386becaf047 511 Gene3D G3DSA:3.40.50.300 7 134 3.6E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07585 9a75b0b6ae6609bc83861386becaf047 511 Gene3D G3DSA:3.40.50.300 422 480 6.8E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04960 a606e54478e89244dec6cf97b63d9bd0 97 Gene3D G3DSA:3.40.50.150 3 62 5.9E-10 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS04960 a606e54478e89244dec6cf97b63d9bd0 97 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 26 32 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RD1_RS04960 a606e54478e89244dec6cf97b63d9bd0 97 SUPERFAMILY SSF53335 3 80 2.45E-9 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 SUPERFAMILY SSF64484 1127 1361 0.0 T 23-04-2016 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 SUPERFAMILY SSF64484 17 941 0.0 T 23-04-2016 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 PANTHER PTHR19376:SF32 6 940 0.0 T 23-04-2016 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 PANTHER PTHR19376:SF32 966 1151 0.0 T 23-04-2016 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 PANTHER PTHR19376:SF32 1298 1357 0.0 T 23-04-2016 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 PANTHER PTHR19376:SF32 1172 1257 0.0 T 23-04-2016 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 Gene3D G3DSA:2.40.40.20 420 492 5.2E-37 T 23-04-2016 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 Gene3D G3DSA:2.40.40.20 352 379 5.2E-37 T 23-04-2016 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 PANTHER PTHR19376 6 940 0.0 T 23-04-2016 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 PANTHER PTHR19376 966 1151 0.0 T 23-04-2016 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 PANTHER PTHR19376 1298 1357 0.0 T 23-04-2016 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 PANTHER PTHR19376 1172 1257 0.0 T 23-04-2016 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 Pfam PF04983 RNA polymerase Rpb1, domain 3 492 645 2.7E-22 T 23-04-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 17 1371 10.356 T 23-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 21 1015 0.0 T 23-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 Hamap MF_01323 DNA-directed RNA polymerase subunit gamma [rpoC1]. 15 671 32.26 T 23-04-2016 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 SMART SM00663 238 517 4.3E-180 T 23-04-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 760 4.3E-16 T 23-04-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 Pfam PF00623 RNA polymerase Rpb1, domain 2 347 401 1.7E-8 T 23-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 Pfam PF00623 RNA polymerase Rpb1, domain 2 398 488 1.9E-26 T 23-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 Pfam PF04997 RNA polymerase Rpb1, domain 1 17 345 1.6E-89 T 23-04-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 Gene3D G3DSA:2.40.50.100 1149 1204 1.3E-8 T 23-04-2016 RD1_RS18380 c2dcdc2faf5efbfb5dc618e6bd461442 1414 Pfam PF04998 RNA polymerase Rpb1, domain 5 763 1310 7.4E-70 T 23-04-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS13140 49ed90732099bba180aa803a322b5a8a 127 PANTHER PTHR12910 7 127 5.0E-26 T 23-04-2016 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 RD1_RS13140 49ed90732099bba180aa803a322b5a8a 127 PANTHER PTHR12910:SF3 7 127 5.0E-26 T 23-04-2016 RD1_RS13140 49ed90732099bba180aa803a322b5a8a 127 Pfam PF05071 NADH ubiquinone oxidoreductase subunit NDUFA12 29 126 1.2E-26 T 23-04-2016 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 RD1_RS17225 935ed7e1d7c1eb08fff791274ffe31dc 495 PANTHER PTHR10196 1 489 3.5E-118 T 23-04-2016 RD1_RS17225 935ed7e1d7c1eb08fff791274ffe31dc 495 Gene3D G3DSA:3.30.420.40 254 490 5.9E-53 T 23-04-2016 RD1_RS17225 935ed7e1d7c1eb08fff791274ffe31dc 495 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 359 379 - T 23-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RD1_RS17225 935ed7e1d7c1eb08fff791274ffe31dc 495 Gene3D G3DSA:3.30.420.40 2 248 1.1E-57 T 23-04-2016 RD1_RS17225 935ed7e1d7c1eb08fff791274ffe31dc 495 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 248 7.3E-47 T 23-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RD1_RS17225 935ed7e1d7c1eb08fff791274ffe31dc 495 SUPERFAMILY SSF53067 251 489 1.97E-55 T 23-04-2016 RD1_RS17225 935ed7e1d7c1eb08fff791274ffe31dc 495 SUPERFAMILY SSF53067 1 248 8.6E-59 T 23-04-2016 RD1_RS17225 935ed7e1d7c1eb08fff791274ffe31dc 495 PIRSF PIRSF000538 1 495 9.9E-133 T 23-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RD1_RS17225 935ed7e1d7c1eb08fff791274ffe31dc 495 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 291 446 6.2E-32 T 23-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RD1_RS03855 c64b88589ab830d11e10d4e7ef142ab3 192 SUPERFAMILY SSF47413 4 69 7.24E-17 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS03855 c64b88589ab830d11e10d4e7ef142ab3 192 SUPERFAMILY SSF51182 49 190 2.12E-25 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS03855 c64b88589ab830d11e10d4e7ef142ab3 192 PANTHER PTHR10245:SF42 5 190 4.4E-61 T 23-04-2016 RD1_RS03855 c64b88589ab830d11e10d4e7ef142ab3 192 SMART SM00530 9 64 1.1E-13 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS03855 c64b88589ab830d11e10d4e7ef142ab3 192 PANTHER PTHR10245 5 190 4.4E-61 T 23-04-2016 RD1_RS03855 c64b88589ab830d11e10d4e7ef142ab3 192 Pfam PF07883 Cupin domain 117 185 2.3E-18 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RD1_RS03855 c64b88589ab830d11e10d4e7ef142ab3 192 Pfam PF01381 Helix-turn-helix 10 63 1.0E-13 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS03855 c64b88589ab830d11e10d4e7ef142ab3 192 Gene3D G3DSA:1.10.260.40 5 69 2.6E-21 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS03855 c64b88589ab830d11e10d4e7ef142ab3 192 Gene3D G3DSA:2.60.120.10 99 191 1.7E-19 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 SUPERFAMILY SSF51735 5 177 3.81E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 Gene3D G3DSA:3.40.50.720 5 158 1.3E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 5 150 7.6E-44 T 23-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 SMART SM00846 1 150 1.8E-59 T 23-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 311 1.3E-59 T 23-04-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 Gene3D G3DSA:3.30.360.10 159 313 4.3E-69 T 23-04-2016 RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 PIRSF PIRSF000149 1 331 3.9E-111 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 148 155 - T 23-04-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 PANTHER PTHR10836:SF37 5 328 2.2E-186 T 23-04-2016 RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 106 119 1.5E-30 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 227 244 1.5E-30 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 1.5E-30 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 267 282 1.5E-30 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 1.5E-30 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 PANTHER PTHR10836 5 328 2.2E-186 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 SUPERFAMILY SSF55347 150 312 6.25E-65 T 23-04-2016 RD1_RS11020 28b78584aba796fc6fe3e922b3e4da09 332 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 5 323 2.5E-115 T 23-04-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS01415 dded3d5eb05958507625524ade80d402 256 PANTHER PTHR30502 6 242 5.7E-92 T 23-04-2016 RD1_RS01415 dded3d5eb05958507625524ade80d402 256 SUPERFAMILY SSF51621 2 254 1.85E-79 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS01415 dded3d5eb05958507625524ade80d402 256 PANTHER PTHR30502:SF5 6 242 5.7E-92 T 23-04-2016 RD1_RS01415 dded3d5eb05958507625524ade80d402 256 Gene3D G3DSA:3.20.20.60 4 244 1.3E-75 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS01415 dded3d5eb05958507625524ade80d402 256 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 19 244 1.8E-54 T 23-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 RD1_RS12690 e14b0f79e9a0b75f0ca1f142aa66e759 327 PIRSF PIRSF006621 2 324 2.4E-100 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RD1_RS12690 e14b0f79e9a0b75f0ca1f142aa66e759 327 SUPERFAMILY SSF51395 12 318 8.79E-80 T 23-04-2016 RD1_RS12690 e14b0f79e9a0b75f0ca1f142aa66e759 327 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 96 114 - T 23-04-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RD1_RS12690 e14b0f79e9a0b75f0ca1f142aa66e759 327 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 7 319 1.1E-106 T 23-04-2016 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 RD1_RS12690 e14b0f79e9a0b75f0ca1f142aa66e759 327 Gene3D G3DSA:3.20.20.70 9 248 4.0E-78 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS12690 e14b0f79e9a0b75f0ca1f142aa66e759 327 Gene3D G3DSA:1.10.1200.80 258 318 1.6E-11 T 23-04-2016 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 RD1_RS12690 e14b0f79e9a0b75f0ca1f142aa66e759 327 Pfam PF01207 Dihydrouridine synthase (Dus) 16 311 1.9E-101 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RD1_RS12690 e14b0f79e9a0b75f0ca1f142aa66e759 327 PANTHER PTHR11082:SF25 7 307 2.7E-116 T 23-04-2016 RD1_RS12690 e14b0f79e9a0b75f0ca1f142aa66e759 327 PANTHER PTHR11082 7 307 2.7E-116 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RD1_RS18650 014591594f3d45048700080c385a9e59 456 PANTHER PTHR34378 15 456 2.1E-226 T 23-04-2016 RD1_RS18650 014591594f3d45048700080c385a9e59 456 TIGRFAM TIGR01436 glu_cys_lig_pln: glutamate--cysteine ligase 10 456 6.3E-195 T 23-04-2016 IPR011556 Glutamate--cysteine ligase, plant GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 RD1_RS18650 014591594f3d45048700080c385a9e59 456 PIRSF PIRSF017901 3 456 4.0E-176 T 23-04-2016 RD1_RS18650 014591594f3d45048700080c385a9e59 456 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 51 356 3.9E-93 T 23-04-2016 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RD1_RS18650 014591594f3d45048700080c385a9e59 456 SUPERFAMILY SSF55931 304 453 5.0E-70 T 23-04-2016 RD1_RS18650 014591594f3d45048700080c385a9e59 456 SUPERFAMILY SSF55931 23 265 5.0E-70 T 23-04-2016 RD1_RS18650 014591594f3d45048700080c385a9e59 456 PANTHER PTHR34378:SF1 15 456 2.1E-226 T 23-04-2016 RD1_RS02780 5742f870764db30f4bb45b2e58ab9462 600 Gene3D G3DSA:2.30.40.10 18 124 1.7E-14 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS02780 5742f870764db30f4bb45b2e58ab9462 600 PANTHER PTHR11113:SF2 418 589 6.5E-157 T 23-04-2016 RD1_RS02780 5742f870764db30f4bb45b2e58ab9462 600 PANTHER PTHR11113:SF2 13 370 6.5E-157 T 23-04-2016 RD1_RS02780 5742f870764db30f4bb45b2e58ab9462 600 SUPERFAMILY SSF51556 84 333 1.63E-20 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS02780 5742f870764db30f4bb45b2e58ab9462 600 PANTHER PTHR11113 418 589 6.5E-157 T 23-04-2016 RD1_RS02780 5742f870764db30f4bb45b2e58ab9462 600 PANTHER PTHR11113 13 370 6.5E-157 T 23-04-2016 RD1_RS02780 5742f870764db30f4bb45b2e58ab9462 600 TIGRFAM TIGR01178 ade: adenine deaminase 27 593 1.4E-145 T 23-04-2016 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 RD1_RS02780 5742f870764db30f4bb45b2e58ab9462 600 SUPERFAMILY SSF51338 18 84 2.24E-17 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS02780 5742f870764db30f4bb45b2e58ab9462 600 SUPERFAMILY SSF51338 337 381 2.24E-17 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS02780 5742f870764db30f4bb45b2e58ab9462 600 Pfam PF13382 Adenine deaminase C-terminal domain 426 591 1.9E-58 T 23-04-2016 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 RD1_RS02780 5742f870764db30f4bb45b2e58ab9462 600 Hamap MF_01518 Adenine deaminase [ade]. 27 594 35.416 T 23-04-2016 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 RD1_RS02780 5742f870764db30f4bb45b2e58ab9462 600 Gene3D G3DSA:2.30.40.10 282 373 3.4E-16 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS02780 5742f870764db30f4bb45b2e58ab9462 600 Pfam PF01979 Amidohydrolase family 80 368 2.3E-23 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RD1_RS06935 1c7467199c153078fa411e62d5b0d4b8 269 SUPERFAMILY SSF53187 23 266 3.77E-62 T 23-04-2016 RD1_RS06935 1c7467199c153078fa411e62d5b0d4b8 269 Gene3D G3DSA:3.40.630.40 31 266 3.0E-65 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RD1_RS06935 1c7467199c153078fa411e62d5b0d4b8 269 Pfam PF05013 N-formylglutamate amidohydrolase 40 242 4.9E-31 T 23-04-2016 IPR007709 N-formylglutamate amidohydrolase RD1_RS06935 1c7467199c153078fa411e62d5b0d4b8 269 PIRSF PIRSF029730 19 268 7.5E-77 T 23-04-2016 IPR011227 Uncharacterised conserved protein UCP029730 RD1_RS13530 57e7eaed59f70951de924ec66af10bee 431 SUPERFAMILY SSF53850 22 420 4.35E-69 T 23-04-2016 RD1_RS13530 57e7eaed59f70951de924ec66af10bee 431 PANTHER PTHR30061 1 426 4.4E-122 T 23-04-2016 RD1_RS13530 57e7eaed59f70951de924ec66af10bee 431 Gene3D G3DSA:3.40.190.10 142 350 3.9E-41 T 23-04-2016 RD1_RS13530 57e7eaed59f70951de924ec66af10bee 431 Pfam PF13416 Bacterial extracellular solute-binding protein 40 352 4.0E-40 T 23-04-2016 RD1_RS13530 57e7eaed59f70951de924ec66af10bee 431 PANTHER PTHR30061:SF7 1 426 4.4E-122 T 23-04-2016 RD1_RS10080 c2fd7bcddb776c17696ee9788537a3fa 269 PANTHER PTHR30614 1 269 1.1E-48 T 23-04-2016 RD1_RS10080 c2fd7bcddb776c17696ee9788537a3fa 269 SUPERFAMILY SSF161098 60 257 3.79E-30 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10080 c2fd7bcddb776c17696ee9788537a3fa 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 260 1.0E-12 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10080 c2fd7bcddb776c17696ee9788537a3fa 269 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 57 160 1.9E-14 T 23-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RD1_RS10080 c2fd7bcddb776c17696ee9788537a3fa 269 Gene3D G3DSA:1.10.3720.10 68 263 1.9E-32 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17010 490cb78e9b2db9ade97b7ab6a6fcc8a7 433 Hamap MF_00455 Xylose isomerase [xylA]. 11 433 51.841 T 23-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RD1_RS17010 490cb78e9b2db9ade97b7ab6a6fcc8a7 433 PANTHER PTHR32176:SF0 3 433 7.6E-231 T 23-04-2016 RD1_RS17010 490cb78e9b2db9ade97b7ab6a6fcc8a7 433 Gene3D G3DSA:3.20.20.150 3 433 2.5E-198 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS17010 490cb78e9b2db9ade97b7ab6a6fcc8a7 433 PANTHER PTHR32176 3 433 7.6E-231 T 23-04-2016 RD1_RS17010 490cb78e9b2db9ade97b7ab6a6fcc8a7 433 TIGRFAM TIGR02630 xylose_isom_A: xylose isomerase 4 433 6.7E-205 T 23-04-2016 IPR013452 Xylose isomerase, bacterial-type GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RD1_RS17010 490cb78e9b2db9ade97b7ab6a6fcc8a7 433 PRINTS PR00688 Xylose isomerase signature 227 251 4.1E-79 T 23-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RD1_RS17010 490cb78e9b2db9ade97b7ab6a6fcc8a7 433 PRINTS PR00688 Xylose isomerase signature 269 296 4.1E-79 T 23-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RD1_RS17010 490cb78e9b2db9ade97b7ab6a6fcc8a7 433 PRINTS PR00688 Xylose isomerase signature 178 199 4.1E-79 T 23-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RD1_RS17010 490cb78e9b2db9ade97b7ab6a6fcc8a7 433 PRINTS PR00688 Xylose isomerase signature 331 342 4.1E-79 T 23-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RD1_RS17010 490cb78e9b2db9ade97b7ab6a6fcc8a7 433 PRINTS PR00688 Xylose isomerase signature 131 151 4.1E-79 T 23-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RD1_RS17010 490cb78e9b2db9ade97b7ab6a6fcc8a7 433 PRINTS PR00688 Xylose isomerase signature 154 173 4.1E-79 T 23-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RD1_RS17010 490cb78e9b2db9ade97b7ab6a6fcc8a7 433 PRINTS PR00688 Xylose isomerase signature 90 112 4.1E-79 T 23-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RD1_RS17010 490cb78e9b2db9ade97b7ab6a6fcc8a7 433 PRINTS PR00688 Xylose isomerase signature 205 224 4.1E-79 T 23-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RD1_RS17010 490cb78e9b2db9ade97b7ab6a6fcc8a7 433 PRINTS PR00688 Xylose isomerase signature 298 309 4.1E-79 T 23-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RD1_RS17010 490cb78e9b2db9ade97b7ab6a6fcc8a7 433 SUPERFAMILY SSF51658 3 433 8.78E-168 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS01285 b6c0b5ebe98585ff3390616b3a4e5961 361 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS01285 b6c0b5ebe98585ff3390616b3a4e5961 361 SMART SM00382 32 215 5.7E-20 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS01285 b6c0b5ebe98585ff3390616b3a4e5961 361 SUPERFAMILY SSF52540 7 245 7.98E-88 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01285 b6c0b5ebe98585ff3390616b3a4e5961 361 PANTHER PTHR24220 9 259 3.3E-131 T 23-04-2016 RD1_RS01285 b6c0b5ebe98585ff3390616b3a4e5961 361 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 39 359 1.7E-107 T 23-04-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 RD1_RS01285 b6c0b5ebe98585ff3390616b3a4e5961 361 PANTHER PTHR24220:SF150 9 259 3.3E-131 T 23-04-2016 RD1_RS01285 b6c0b5ebe98585ff3390616b3a4e5961 361 Pfam PF00005 ABC transporter 23 165 1.8E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS01285 b6c0b5ebe98585ff3390616b3a4e5961 361 Gene3D G3DSA:3.40.50.300 5 239 1.6E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01285 b6c0b5ebe98585ff3390616b3a4e5961 361 SUPERFAMILY SSF50331 240 358 2.55E-8 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS09055 c3d218bffdd1117f2cbe7e791f30dccd 399 Pfam PF01494 FAD binding domain 6 346 3.8E-30 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 RD1_RS09055 c3d218bffdd1117f2cbe7e791f30dccd 399 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 7 396 6.6E-80 T 23-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 RD1_RS09055 c3d218bffdd1117f2cbe7e791f30dccd 399 PANTHER PTHR13789:SF5 4 397 2.4E-61 T 23-04-2016 RD1_RS09055 c3d218bffdd1117f2cbe7e791f30dccd 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 290 305 4.1E-17 T 23-04-2016 RD1_RS09055 c3d218bffdd1117f2cbe7e791f30dccd 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 305 321 4.1E-17 T 23-04-2016 RD1_RS09055 c3d218bffdd1117f2cbe7e791f30dccd 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 162 177 4.1E-17 T 23-04-2016 RD1_RS09055 c3d218bffdd1117f2cbe7e791f30dccd 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 4.1E-17 T 23-04-2016 RD1_RS09055 c3d218bffdd1117f2cbe7e791f30dccd 399 Gene3D G3DSA:3.50.50.60 278 361 2.9E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS09055 c3d218bffdd1117f2cbe7e791f30dccd 399 Gene3D G3DSA:3.50.50.60 6 188 2.9E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS09055 c3d218bffdd1117f2cbe7e791f30dccd 399 PANTHER PTHR13789 4 397 2.4E-61 T 23-04-2016 RD1_RS09055 c3d218bffdd1117f2cbe7e791f30dccd 399 SUPERFAMILY SSF51905 6 183 2.22E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS09055 c3d218bffdd1117f2cbe7e791f30dccd 399 SUPERFAMILY SSF51905 277 392 2.22E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08885 ed9ff83f263bfececb5e7afa6c866850 387 PANTHER PTHR10264:SF51 18 364 1.4E-96 T 23-04-2016 IPR010201 HflK GO:0016021 RD1_RS08885 ed9ff83f263bfececb5e7afa6c866850 387 Pfam PF01145 SPFH domain / Band 7 family 121 285 2.3E-22 T 23-04-2016 IPR001107 Band 7 domain RD1_RS08885 ed9ff83f263bfececb5e7afa6c866850 387 SUPERFAMILY SSF117892 148 277 1.96E-21 T 23-04-2016 IPR001107 Band 7 domain RD1_RS08885 ed9ff83f263bfececb5e7afa6c866850 387 SMART SM00244 105 270 1.6E-17 T 23-04-2016 IPR001107 Band 7 domain RD1_RS08885 ed9ff83f263bfececb5e7afa6c866850 387 TIGRFAM TIGR01933 hflK: HflK protein 107 360 3.9E-74 T 23-04-2016 IPR010201 HflK GO:0016021 RD1_RS08885 ed9ff83f263bfececb5e7afa6c866850 387 PANTHER PTHR10264 18 364 1.4E-96 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RD1_RS10325 82300c15a5f342360d0f6144bb33491b 322 Gene3D G3DSA:3.90.660.10 185 281 1.7E-45 T 23-04-2016 RD1_RS10325 82300c15a5f342360d0f6144bb33491b 322 Gene3D G3DSA:3.90.660.10 44 108 1.7E-45 T 23-04-2016 RD1_RS10325 82300c15a5f342360d0f6144bb33491b 322 Pfam PF13450 NAD(P)-binding Rossmann-like domain 9 70 6.8E-15 T 23-04-2016 RD1_RS10325 82300c15a5f342360d0f6144bb33491b 322 SUPERFAMILY SSF51905 2 194 8.42E-30 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10325 82300c15a5f342360d0f6144bb33491b 322 SUPERFAMILY SSF51905 284 320 8.42E-30 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10325 82300c15a5f342360d0f6144bb33491b 322 Gene3D G3DSA:3.50.50.60 109 184 6.0E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10325 82300c15a5f342360d0f6144bb33491b 322 Gene3D G3DSA:3.50.50.60 5 42 6.0E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10325 82300c15a5f342360d0f6144bb33491b 322 Gene3D G3DSA:3.50.50.60 284 320 6.0E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10325 82300c15a5f342360d0f6144bb33491b 322 PANTHER PTHR16128 4 321 2.1E-60 T 23-04-2016 RD1_RS13070 a085f99a7be4005467b1e1a5237e1f88 127 Pfam PF00072 Response regulator receiver domain 5 116 9.2E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS13070 a085f99a7be4005467b1e1a5237e1f88 127 SMART SM00448 3 116 7.2E-36 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS13070 a085f99a7be4005467b1e1a5237e1f88 127 SUPERFAMILY SSF52172 2 122 3.13E-36 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS13070 a085f99a7be4005467b1e1a5237e1f88 127 PANTHER PTHR26402 3 120 1.3E-38 T 23-04-2016 RD1_RS13070 a085f99a7be4005467b1e1a5237e1f88 127 Gene3D G3DSA:3.40.50.2300 2 124 4.7E-38 T 23-04-2016 RD1_RS13425 0ff4bd8ef41b057a43ee88ccf0c102d3 365 Pfam PF00005 ABC transporter 25 160 3.4E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS13425 0ff4bd8ef41b057a43ee88ccf0c102d3 365 Gene3D G3DSA:3.40.50.300 19 225 3.1E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13425 0ff4bd8ef41b057a43ee88ccf0c102d3 365 PANTHER PTHR24220 274 303 7.0E-93 T 23-04-2016 RD1_RS13425 0ff4bd8ef41b057a43ee88ccf0c102d3 365 PANTHER PTHR24220 1 252 7.0E-93 T 23-04-2016 RD1_RS13425 0ff4bd8ef41b057a43ee88ccf0c102d3 365 PANTHER PTHR24220:SF284 274 303 7.0E-93 T 23-04-2016 RD1_RS13425 0ff4bd8ef41b057a43ee88ccf0c102d3 365 PANTHER PTHR24220:SF284 1 252 7.0E-93 T 23-04-2016 RD1_RS13425 0ff4bd8ef41b057a43ee88ccf0c102d3 365 SMART SM00382 23 210 1.5E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS13425 0ff4bd8ef41b057a43ee88ccf0c102d3 365 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 3 353 1.4E-121 T 23-04-2016 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 RD1_RS13425 0ff4bd8ef41b057a43ee88ccf0c102d3 365 SUPERFAMILY SSF52540 9 225 2.92E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13425 0ff4bd8ef41b057a43ee88ccf0c102d3 365 Pfam PF03459 TOBE domain 293 353 7.6E-13 T 23-04-2016 IPR005116 Transport-associated OB, type 1 RD1_RS13425 0ff4bd8ef41b057a43ee88ccf0c102d3 365 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS13425 0ff4bd8ef41b057a43ee88ccf0c102d3 365 SUPERFAMILY SSF50331 238 353 1.97E-20 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS13425 0ff4bd8ef41b057a43ee88ccf0c102d3 365 Gene3D G3DSA:2.40.50.100 279 351 7.9E-19 T 23-04-2016 RD1_RS02575 2ecfeb2fbf161167115c90a54f7e910b 324 PANTHER PTHR22911 7 305 1.4E-44 T 23-04-2016 RD1_RS02575 2ecfeb2fbf161167115c90a54f7e910b 324 Pfam PF00892 EamA-like transporter family 162 301 8.7E-7 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS02575 2ecfeb2fbf161167115c90a54f7e910b 324 Pfam PF00892 EamA-like transporter family 13 145 1.0E-13 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS02575 2ecfeb2fbf161167115c90a54f7e910b 324 SUPERFAMILY SSF103481 220 305 3.27E-10 T 23-04-2016 RD1_RS02575 2ecfeb2fbf161167115c90a54f7e910b 324 SUPERFAMILY SSF103481 46 148 7.32E-13 T 23-04-2016 RD1_RS15340 d8f41ffb4e529d2b21e4b8271d0de472 328 Gene3D G3DSA:3.40.50.300 57 229 3.3E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15340 d8f41ffb4e529d2b21e4b8271d0de472 328 SUPERFAMILY SSF52540 56 292 1.26E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15340 d8f41ffb4e529d2b21e4b8271d0de472 328 TIGRFAM TIGR01650 PD_CobS: cobaltochelatase, CobS subunit 7 324 3.3E-176 T 23-04-2016 IPR006537 Cobaltochelatase subunit CobS KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RD1_RS15340 d8f41ffb4e529d2b21e4b8271d0de472 328 Pfam PF07728 AAA domain (dynein-related subfamily) 67 189 3.2E-12 T 23-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RD1_RS15340 d8f41ffb4e529d2b21e4b8271d0de472 328 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 241 293 1.1E-4 T 23-04-2016 IPR013615 CbbQ/NirQ/NorQ, C-terminal RD1_RS15340 d8f41ffb4e529d2b21e4b8271d0de472 328 Pfam PF12556 Cobaltochelatase CobS subunit N terminal 7 40 6.1E-14 T 23-04-2016 IPR025865 Cobaltochelatase subunit CobS N-terminal domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RD1_RS07900 9bb1eb1314d627eb1d9caa72cd25b158 392 PANTHER PTHR10909:SF10 19 383 3.8E-90 T 23-04-2016 RD1_RS07900 9bb1eb1314d627eb1d9caa72cd25b158 392 SUPERFAMILY SSF47203 230 387 1.34E-41 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS07900 9bb1eb1314d627eb1d9caa72cd25b158 392 PANTHER PTHR10909 19 383 3.8E-90 T 23-04-2016 RD1_RS07900 9bb1eb1314d627eb1d9caa72cd25b158 392 Gene3D G3DSA:2.40.110.10 113 214 3.0E-26 T 23-04-2016 RD1_RS07900 9bb1eb1314d627eb1d9caa72cd25b158 392 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 381 1.5E-37 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS07900 9bb1eb1314d627eb1d9caa72cd25b158 392 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 113 214 1.2E-20 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RD1_RS07900 9bb1eb1314d627eb1d9caa72cd25b158 392 SUPERFAMILY SSF56645 10 223 8.38E-50 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RD1_RS07900 9bb1eb1314d627eb1d9caa72cd25b158 392 Gene3D G3DSA:1.20.140.10 215 384 1.9E-43 T 23-04-2016 RD1_RS07900 9bb1eb1314d627eb1d9caa72cd25b158 392 Gene3D G3DSA:1.10.540.10 5 101 1.9E-23 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS07900 9bb1eb1314d627eb1d9caa72cd25b158 392 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 109 8.9E-16 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS10030 26714e2c0abf3e7ca0363619f3f52ae4 454 SUPERFAMILY SSF54368 7 112 7.59E-19 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS10030 26714e2c0abf3e7ca0363619f3f52ae4 454 Pfam PF00120 Glutamine synthetase, catalytic domain 118 448 1.3E-99 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS10030 26714e2c0abf3e7ca0363619f3f52ae4 454 PANTHER PTHR20852 9 454 1.2E-145 T 23-04-2016 RD1_RS10030 26714e2c0abf3e7ca0363619f3f52ae4 454 SUPERFAMILY SSF55931 117 452 2.26E-106 T 23-04-2016 RD1_RS10030 26714e2c0abf3e7ca0363619f3f52ae4 454 PANTHER PTHR20852:SF35 9 454 1.2E-145 T 23-04-2016 RD1_RS10030 26714e2c0abf3e7ca0363619f3f52ae4 454 Gene3D G3DSA:3.30.590.10 120 441 7.1E-95 T 23-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 RD1_RS10030 26714e2c0abf3e7ca0363619f3f52ae4 454 Gene3D G3DSA:3.10.20.70 8 118 3.9E-9 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS10030 26714e2c0abf3e7ca0363619f3f52ae4 454 SMART SM01230 117 371 2.2E-99 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RD1_RS07965 e4405fbec52233cdbc90df1cc3a6f4ea 297 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 10 269 1.6E-24 T 23-04-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type RD1_RS07965 e4405fbec52233cdbc90df1cc3a6f4ea 297 PANTHER PTHR12862 8 234 5.6E-39 T 23-04-2016 RD1_RS07965 e4405fbec52233cdbc90df1cc3a6f4ea 297 SUPERFAMILY SSF53067 117 286 5.02E-39 T 23-04-2016 RD1_RS07965 e4405fbec52233cdbc90df1cc3a6f4ea 297 SUPERFAMILY SSF53067 6 114 3.79E-19 T 23-04-2016 RD1_RS07965 e4405fbec52233cdbc90df1cc3a6f4ea 297 PANTHER PTHR12862:SF5 8 234 5.6E-39 T 23-04-2016 RD1_RS07965 e4405fbec52233cdbc90df1cc3a6f4ea 297 Gene3D G3DSA:3.30.420.40 7 87 0.001 T 23-04-2016 RD1_RS13460 9b713c2a4011200d5ddd62373b482333 342 Pfam PF13377 Periplasmic binding protein-like domain 175 337 8.1E-30 T 23-04-2016 RD1_RS13460 9b713c2a4011200d5ddd62373b482333 342 Gene3D G3DSA:1.10.260.40 11 67 2.5E-17 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS13460 9b713c2a4011200d5ddd62373b482333 342 SMART SM00354 8 78 4.0E-21 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS13460 9b713c2a4011200d5ddd62373b482333 342 SUPERFAMILY SSF53822 68 338 2.52E-64 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS13460 9b713c2a4011200d5ddd62373b482333 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 55 1.7E-12 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS13460 9b713c2a4011200d5ddd62373b482333 342 Gene3D G3DSA:3.40.50.2300 68 174 4.1E-37 T 23-04-2016 RD1_RS13460 9b713c2a4011200d5ddd62373b482333 342 Gene3D G3DSA:3.40.50.2300 175 338 3.5E-45 T 23-04-2016 RD1_RS13460 9b713c2a4011200d5ddd62373b482333 342 SUPERFAMILY SSF47413 8 64 4.97E-13 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS13460 9b713c2a4011200d5ddd62373b482333 342 PANTHER PTHR30146 8 337 1.2E-91 T 23-04-2016 RD1_RS02380 d98d62080bb3e456bbec2558b37ec0d1 189 PANTHER PTHR36448 1 165 1.3E-40 T 23-04-2016 RD1_RS02380 d98d62080bb3e456bbec2558b37ec0d1 189 PANTHER PTHR36448:SF2 1 165 1.3E-40 T 23-04-2016 RD1_RS02380 d98d62080bb3e456bbec2558b37ec0d1 189 PIRSF PIRSF019307 1 168 1.7E-39 T 23-04-2016 IPR014500 Uncharacterised conserved protein UCP019307, cupin-type RD1_RS02380 d98d62080bb3e456bbec2558b37ec0d1 189 SUPERFAMILY SSF51182 12 131 1.92E-16 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS02380 d98d62080bb3e456bbec2558b37ec0d1 189 Pfam PF03079 ARD/ARD' family 71 118 6.7E-5 T 23-04-2016 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|UniPathway: UPA00904 RD1_RS02380 d98d62080bb3e456bbec2558b37ec0d1 189 Gene3D G3DSA:2.60.120.10 6 131 1.9E-19 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 PANTHER PTHR24322 159 190 1.6E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 PANTHER PTHR24322 7 134 1.6E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 1.3E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 1.3E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.3E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 6.6E-27 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 6.6E-27 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 6.6E-27 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 6.6E-27 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 6.6E-27 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 6.6E-27 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 250 5.2E-45 T 23-04-2016 RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 190 0.0066 T 23-04-2016 RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 SUPERFAMILY SSF51735 3 252 9.85E-61 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02335 6b2cf2fd0941614b16ad075ef04797a9 255 Gene3D G3DSA:3.40.50.720 3 251 1.3E-61 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS04435 6697057096c5c87018f490a942854c54 198 PANTHER PTHR23091 49 175 9.7E-19 T 23-04-2016 RD1_RS04435 6697057096c5c87018f490a942854c54 198 Gene3D G3DSA:3.40.630.30 74 172 4.9E-12 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS04435 6697057096c5c87018f490a942854c54 198 PANTHER PTHR23091:SF236 49 175 9.7E-19 T 23-04-2016 RD1_RS04435 6697057096c5c87018f490a942854c54 198 SUPERFAMILY SSF55729 50 175 7.2E-16 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS13385 af1d5cf00a69cc4a21817c767c419c27 234 Pfam PF14563 Domain of unknown function (DUF4444) 191 232 7.7E-25 T 23-04-2016 IPR028044 Domain of unknown function DUF4444 RD1_RS13385 af1d5cf00a69cc4a21817c767c419c27 234 Gene3D G3DSA:2.30.30.100 190 232 3.8E-19 T 23-04-2016 RD1_RS13385 af1d5cf00a69cc4a21817c767c419c27 234 SUPERFAMILY SSF55681 46 186 1.07E-5 T 23-04-2016 RD1_RS13385 af1d5cf00a69cc4a21817c767c419c27 234 Pfam PF16917 Biotin/lipoate A/B protein ligase family 6 185 9.1E-78 T 23-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 RD1_RS13385 af1d5cf00a69cc4a21817c767c419c27 234 Gene3D G3DSA:3.30.930.10 16 189 1.1E-63 T 23-04-2016 RD1_RS05640 a0d35ab700e5ac55da4295c3011053e6 119 SUPERFAMILY SSF51230 1 118 2.09E-43 T 23-04-2016 IPR011053 Single hybrid motif RD1_RS05640 a0d35ab700e5ac55da4295c3011053e6 119 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 1 119 25.355 T 23-04-2016 IPR002930 Glycine cleavage system H-protein RD1_RS05640 a0d35ab700e5ac55da4295c3011053e6 119 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 1 117 5.0E-44 T 23-04-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 RD1_RS05640 a0d35ab700e5ac55da4295c3011053e6 119 Gene3D G3DSA:2.40.50.100 1 118 4.4E-48 T 23-04-2016 RD1_RS05640 a0d35ab700e5ac55da4295c3011053e6 119 PANTHER PTHR11715 2 118 1.3E-58 T 23-04-2016 IPR002930 Glycine cleavage system H-protein RD1_RS05640 a0d35ab700e5ac55da4295c3011053e6 119 Pfam PF01597 Glycine cleavage H-protein 2 117 3.9E-42 T 23-04-2016 IPR002930 Glycine cleavage system H-protein RD1_RS05640 a0d35ab700e5ac55da4295c3011053e6 119 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 41 70 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RD1_RS03560 f90ac0dc7fa5d2fa1873d29617a0bf09 292 Pfam PF01435 Peptidase family M48 64 273 3.4E-39 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RD1_RS03560 f90ac0dc7fa5d2fa1873d29617a0bf09 292 Gene3D G3DSA:3.30.2010.10 55 144 9.5E-35 T 23-04-2016 RD1_RS03560 f90ac0dc7fa5d2fa1873d29617a0bf09 292 PANTHER PTHR10120:SF19 1 287 1.5E-97 T 23-04-2016 RD1_RS03560 f90ac0dc7fa5d2fa1873d29617a0bf09 292 Hamap MF_00188 Protease HtpX [htpX]. 1 273 27.972 T 23-04-2016 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 RD1_RS03560 f90ac0dc7fa5d2fa1873d29617a0bf09 292 PANTHER PTHR10120 1 287 1.5E-97 T 23-04-2016 RD1_RS04040 f894503095a4bb5f920cb5296771fd1d 385 PANTHER PTHR40252:SF2 5 385 1.5E-57 T 23-04-2016 RD1_RS04040 f894503095a4bb5f920cb5296771fd1d 385 SMART SM01204 234 364 3.0E-29 T 23-04-2016 IPR019494 FIST, C-domain RD1_RS04040 f894503095a4bb5f920cb5296771fd1d 385 SMART SM00897 36 233 2.3E-51 T 23-04-2016 IPR013702 FIST domain, N-terminal RD1_RS04040 f894503095a4bb5f920cb5296771fd1d 385 Pfam PF08495 FIST N domain 39 231 2.7E-32 T 23-04-2016 IPR013702 FIST domain, N-terminal RD1_RS04040 f894503095a4bb5f920cb5296771fd1d 385 Pfam PF10442 FIST C domain 234 361 4.1E-12 T 23-04-2016 IPR019494 FIST, C-domain RD1_RS04040 f894503095a4bb5f920cb5296771fd1d 385 PANTHER PTHR40252 5 385 1.5E-57 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 SUPERFAMILY SSF51905 1 57 4.86E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 SUPERFAMILY SSF51905 217 241 4.86E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 SUPERFAMILY SSF51905 102 188 4.86E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 SUPERFAMILY SSF51905 273 388 4.86E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PANTHER PTHR22912 2 241 3.9E-179 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PANTHER PTHR22912 272 481 3.9E-179 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PIRSF PIRSF000350 1 478 1.9E-67 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PANTHER PTHR22912:SF106 2 241 3.9E-179 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PANTHER PTHR22912:SF106 272 481 3.9E-179 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 41 51 - T 23-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 Gene3D G3DSA:3.30.390.30 358 478 4.1E-42 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 350 1.7E-60 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 SUPERFAMILY SSF55424 367 478 8.76E-35 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 Gene3D G3DSA:3.50.50.60 141 239 4.6E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 Gene3D G3DSA:3.50.50.60 276 357 4.6E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 171 196 3.5E-62 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 452 472 3.5E-62 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 330 337 3.5E-62 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 3.5E-62 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 445 3.5E-62 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 366 387 3.5E-62 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 146 3.5E-62 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 3.5E-62 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 9.2E-31 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 315 337 9.2E-31 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 9.2E-31 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 286 302 9.2E-31 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 171 189 9.2E-31 T 23-04-2016 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 370 477 2.5E-34 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RD1_RS08880 75f009f579287c9e6aaaaa608c31c8ec 484 Gene3D G3DSA:3.50.50.60 4 140 4.0E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS06990 e0bff864dc36e63fcbef7f5a8491203d 187 Gene3D G3DSA:3.40.30.10 36 168 6.3E-26 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS06990 e0bff864dc36e63fcbef7f5a8491203d 187 Pfam PF13098 Thioredoxin-like domain 49 132 1.2E-11 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS06990 e0bff864dc36e63fcbef7f5a8491203d 187 SUPERFAMILY SSF52833 38 176 1.08E-10 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS10560 1caacd8f5c8fcded50a368256678d471 612 PANTHER PTHR30047 396 595 3.1E-130 T 23-04-2016 RD1_RS10560 1caacd8f5c8fcded50a368256678d471 612 PANTHER PTHR30047 26 334 3.1E-130 T 23-04-2016 RD1_RS10560 1caacd8f5c8fcded50a368256678d471 612 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 27 593 1.6E-168 T 23-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 RD1_RS10560 1caacd8f5c8fcded50a368256678d471 612 PANTHER PTHR30047:SF2 396 595 3.1E-130 T 23-04-2016 RD1_RS10560 1caacd8f5c8fcded50a368256678d471 612 PANTHER PTHR30047:SF2 26 334 3.1E-130 T 23-04-2016 RD1_RS04505 9672e74619a97a906fd7d27ab2ddb6d0 592 Gene3D G3DSA:3.40.50.970 351 564 6.9E-44 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS04505 9672e74619a97a906fd7d27ab2ddb6d0 592 Gene3D G3DSA:3.40.50.1220 181 333 1.2E-46 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS04505 9672e74619a97a906fd7d27ab2ddb6d0 592 SUPERFAMILY SSF52518 380 584 1.83E-41 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS04505 9672e74619a97a906fd7d27ab2ddb6d0 592 TIGRFAM TIGR03457 sulphoacet_xsc: sulfoacetaldehyde acetyltransferase 2 579 2.0E-274 T 23-04-2016 IPR017820 Sulphoacetaldehyde acetyltransferase GO:0000287|GO:0005737|GO:0019529|GO:0030976|GO:0050487 KEGG: 00430+2.3.3.15|MetaCyc: PWY-1281|MetaCyc: PWY-6637|UniPathway: UPA00336 RD1_RS04505 9672e74619a97a906fd7d27ab2ddb6d0 592 PANTHER PTHR18968 1 561 1.2E-103 T 23-04-2016 RD1_RS04505 9672e74619a97a906fd7d27ab2ddb6d0 592 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 323 1.5E-33 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RD1_RS04505 9672e74619a97a906fd7d27ab2ddb6d0 592 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 169 1.0E-44 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RD1_RS04505 9672e74619a97a906fd7d27ab2ddb6d0 592 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 405 556 5.0E-26 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RD1_RS04505 9672e74619a97a906fd7d27ab2ddb6d0 592 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 442 461 - T 23-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RD1_RS04505 9672e74619a97a906fd7d27ab2ddb6d0 592 SUPERFAMILY SSF52467 153 358 7.28E-41 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS04505 9672e74619a97a906fd7d27ab2ddb6d0 592 SUPERFAMILY SSF52518 1 176 4.02E-44 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS04505 9672e74619a97a906fd7d27ab2ddb6d0 592 Gene3D G3DSA:3.40.50.970 1 174 2.4E-51 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS08385 b6ad39660d92653ab6110fdff1ac428d 532 PANTHER PTHR10459 222 527 2.5E-68 T 23-04-2016 RD1_RS08385 b6ad39660d92653ab6110fdff1ac428d 532 Pfam PF04675 DNA ligase N terminus 2 159 2.2E-21 T 23-04-2016 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 RD1_RS08385 b6ad39660d92653ab6110fdff1ac428d 532 SUPERFAMILY SSF56091 201 403 7.67E-57 T 23-04-2016 RD1_RS08385 b6ad39660d92653ab6110fdff1ac428d 532 Gene3D G3DSA:3.30.1490.70 360 403 6.8E-21 T 23-04-2016 RD1_RS08385 b6ad39660d92653ab6110fdff1ac428d 532 Gene3D G3DSA:3.30.1490.70 200 230 6.8E-21 T 23-04-2016 RD1_RS08385 b6ad39660d92653ab6110fdff1ac428d 532 PANTHER PTHR10459:SF10 222 527 2.5E-68 T 23-04-2016 RD1_RS08385 b6ad39660d92653ab6110fdff1ac428d 532 Pfam PF01068 ATP dependent DNA ligase domain 220 403 1.2E-30 T 23-04-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 RD1_RS08385 b6ad39660d92653ab6110fdff1ac428d 532 TIGRFAM TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family 2 528 6.0E-198 T 23-04-2016 IPR026333 ATP-dependent DNA ligase, PP_1105 family RD1_RS08385 b6ad39660d92653ab6110fdff1ac428d 532 SUPERFAMILY SSF117018 3 176 1.44E-5 T 23-04-2016 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 RD1_RS08385 b6ad39660d92653ab6110fdff1ac428d 532 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 226 234 - T 23-04-2016 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 Reactome: REACT_216 RD1_RS08385 b6ad39660d92653ab6110fdff1ac428d 532 Gene3D G3DSA:3.30.470.30 231 347 1.1E-28 T 23-04-2016 RD1_RS08385 b6ad39660d92653ab6110fdff1ac428d 532 Pfam PF04679 ATP dependent DNA ligase C terminal region 424 513 2.8E-12 T 23-04-2016 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 RD1_RS08385 b6ad39660d92653ab6110fdff1ac428d 532 SUPERFAMILY SSF50249 408 529 1.71E-31 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS08385 b6ad39660d92653ab6110fdff1ac428d 532 Gene3D G3DSA:2.40.50.140 408 529 1.8E-35 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS09710 8df62467bdba91a9093d9276add89041 170 PANTHER PTHR30128:SF18 56 163 5.7E-43 T 23-04-2016 RD1_RS09710 8df62467bdba91a9093d9276add89041 170 Pfam PF00691 OmpA family 63 158 4.2E-23 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS09710 8df62467bdba91a9093d9276add89041 170 SUPERFAMILY SSF103088 52 162 1.83E-33 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS09710 8df62467bdba91a9093d9276add89041 170 PANTHER PTHR30128 56 163 5.7E-43 T 23-04-2016 RD1_RS09710 8df62467bdba91a9093d9276add89041 170 PRINTS PR01021 OMPA domain signature 64 86 1.8E-15 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RD1_RS09710 8df62467bdba91a9093d9276add89041 170 PRINTS PR01021 OMPA domain signature 109 125 1.8E-15 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RD1_RS09710 8df62467bdba91a9093d9276add89041 170 PRINTS PR01021 OMPA domain signature 94 109 1.8E-15 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RD1_RS09710 8df62467bdba91a9093d9276add89041 170 Gene3D G3DSA:3.30.1330.60 57 163 1.2E-33 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS09710 8df62467bdba91a9093d9276add89041 170 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 62 163 7.8E-41 T 23-04-2016 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 RD1_RS09710 8df62467bdba91a9093d9276add89041 170 ProSitePatterns PS01068 OmpA-like domain. 96 140 - T 23-04-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 RD1_RS14075 27a74446803ebf03600fe4da42567086 294 SUPERFAMILY SSF53335 80 262 4.83E-53 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS14075 27a74446803ebf03600fe4da42567086 294 PIRSF PIRSF000410 1 281 2.3E-107 T 23-04-2016 IPR026024 Chemotaxis protein methyltransferase CheR RD1_RS14075 27a74446803ebf03600fe4da42567086 294 PANTHER PTHR24422:SF13 1 262 5.1E-69 T 23-04-2016 RD1_RS14075 27a74446803ebf03600fe4da42567086 294 Gene3D G3DSA:3.40.50.150 79 275 3.5E-65 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS14075 27a74446803ebf03600fe4da42567086 294 Pfam PF01739 CheR methyltransferase, SAM binding domain 80 262 2.6E-64 T 23-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RD1_RS14075 27a74446803ebf03600fe4da42567086 294 PANTHER PTHR24422 1 262 5.1E-69 T 23-04-2016 RD1_RS14075 27a74446803ebf03600fe4da42567086 294 PRINTS PR00996 Glutamate methyltransferase family signature 113 133 2.5E-42 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RD1_RS14075 27a74446803ebf03600fe4da42567086 294 PRINTS PR00996 Glutamate methyltransferase family signature 34 47 2.5E-42 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RD1_RS14075 27a74446803ebf03600fe4da42567086 294 PRINTS PR00996 Glutamate methyltransferase family signature 219 233 2.5E-42 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RD1_RS14075 27a74446803ebf03600fe4da42567086 294 PRINTS PR00996 Glutamate methyltransferase family signature 73 85 2.5E-42 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RD1_RS14075 27a74446803ebf03600fe4da42567086 294 PRINTS PR00996 Glutamate methyltransferase family signature 148 164 2.5E-42 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RD1_RS14075 27a74446803ebf03600fe4da42567086 294 PRINTS PR00996 Glutamate methyltransferase family signature 238 261 2.5E-42 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RD1_RS14075 27a74446803ebf03600fe4da42567086 294 Pfam PF03705 CheR methyltransferase, all-alpha domain 15 61 4.0E-10 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RD1_RS14075 27a74446803ebf03600fe4da42567086 294 SMART SM00138 12 280 2.4E-93 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RD1_RS14075 27a74446803ebf03600fe4da42567086 294 Gene3D G3DSA:1.10.155.10 7 78 2.5E-15 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RD1_RS14075 27a74446803ebf03600fe4da42567086 294 SUPERFAMILY SSF47757 5 79 1.7E-12 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RD1_RS03810 8826b0a708beb78a6ee540156205cd7c 593 Gene3D G3DSA:3.40.50.970 370 567 4.8E-47 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS03810 8826b0a708beb78a6ee540156205cd7c 593 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 405 558 4.6E-27 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RD1_RS03810 8826b0a708beb78a6ee540156205cd7c 593 SUPERFAMILY SSF52467 153 351 1.64E-40 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS03810 8826b0a708beb78a6ee540156205cd7c 593 SUPERFAMILY SSF52518 380 588 2.03E-44 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS03810 8826b0a708beb78a6ee540156205cd7c 593 PANTHER PTHR18968 1 561 1.4E-105 T 23-04-2016 RD1_RS03810 8826b0a708beb78a6ee540156205cd7c 593 Gene3D G3DSA:3.40.50.1220 179 331 1.3E-48 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RD1_RS03810 8826b0a708beb78a6ee540156205cd7c 593 TIGRFAM TIGR03457 sulphoacet_xsc: sulfoacetaldehyde acetyltransferase 2 579 6.6E-279 T 23-04-2016 IPR017820 Sulphoacetaldehyde acetyltransferase GO:0000287|GO:0005737|GO:0019529|GO:0030976|GO:0050487 KEGG: 00430+2.3.3.15|MetaCyc: PWY-1281|MetaCyc: PWY-6637|UniPathway: UPA00336 RD1_RS03810 8826b0a708beb78a6ee540156205cd7c 593 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 168 1.3E-40 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RD1_RS03810 8826b0a708beb78a6ee540156205cd7c 593 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 442 461 - T 23-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RD1_RS03810 8826b0a708beb78a6ee540156205cd7c 593 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 325 6.3E-33 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RD1_RS03810 8826b0a708beb78a6ee540156205cd7c 593 SUPERFAMILY SSF52518 1 178 1.43E-42 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS03810 8826b0a708beb78a6ee540156205cd7c 593 Gene3D G3DSA:3.40.50.970 1 178 2.5E-49 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS00850 938ddbb94b5f5b6d57e10b53004c5122 381 SUPERFAMILY SSF55031 182 291 4.34E-27 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS00850 938ddbb94b5f5b6d57e10b53004c5122 381 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 4 381 46.081 T 23-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 RD1_RS00850 938ddbb94b5f5b6d57e10b53004c5122 381 PANTHER PTHR11014 7 381 9.5E-71 T 23-04-2016 RD1_RS00850 938ddbb94b5f5b6d57e10b53004c5122 381 Pfam PF01546 Peptidase family M20/M25/M40 67 377 5.2E-39 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RD1_RS00850 938ddbb94b5f5b6d57e10b53004c5122 381 Gene3D G3DSA:3.30.70.360 191 292 2.9E-28 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS00850 938ddbb94b5f5b6d57e10b53004c5122 381 Pfam PF07687 Peptidase dimerisation domain 178 281 1.9E-20 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS00850 938ddbb94b5f5b6d57e10b53004c5122 381 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 8 377 1.3E-114 T 23-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 RD1_RS00850 938ddbb94b5f5b6d57e10b53004c5122 381 SUPERFAMILY SSF53187 6 181 7.43E-59 T 23-04-2016 RD1_RS00850 938ddbb94b5f5b6d57e10b53004c5122 381 SUPERFAMILY SSF53187 299 379 7.43E-59 T 23-04-2016 RD1_RS00850 938ddbb94b5f5b6d57e10b53004c5122 381 Gene3D G3DSA:3.40.630.10 323 379 2.0E-65 T 23-04-2016 RD1_RS00850 938ddbb94b5f5b6d57e10b53004c5122 381 Gene3D G3DSA:3.40.630.10 7 190 2.0E-65 T 23-04-2016 RD1_RS00850 938ddbb94b5f5b6d57e10b53004c5122 381 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 101 138 - T 23-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RD1_RS05865 bd01bb5c71844f943a3de28709f23e79 241 PANTHER PTHR10422 22 163 3.0E-77 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS05865 bd01bb5c71844f943a3de28709f23e79 241 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 7 230 4.2E-95 T 23-04-2016 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO RD1_RS05865 bd01bb5c71844f943a3de28709f23e79 241 Gene3D G3DSA:1.10.760.10 18 227 2.2E-34 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS05865 bd01bb5c71844f943a3de28709f23e79 241 SUPERFAMILY SSF46626 215 226 2.57E-27 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS05865 bd01bb5c71844f943a3de28709f23e79 241 SUPERFAMILY SSF46626 18 173 2.57E-27 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS05865 bd01bb5c71844f943a3de28709f23e79 241 PANTHER PTHR10422:SF23 22 163 3.0E-77 T 23-04-2016 RD1_RS05865 bd01bb5c71844f943a3de28709f23e79 241 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 7 236 3.8E-111 T 23-04-2016 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO RD1_RS14645 f006e3b0350625e4e72c561b91a633f4 77 SUPERFAMILY SSF47473 24 68 1.37E-7 T 23-04-2016 IPR011992 EF-hand domain pair RD1_RS14645 f006e3b0350625e4e72c561b91a633f4 77 ProSitePatterns PS00018 EF-hand calcium-binding domain. 26 38 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site RD1_RS14645 f006e3b0350625e4e72c561b91a633f4 77 ProSitePatterns PS00018 EF-hand calcium-binding domain. 54 66 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site RD1_RS14645 f006e3b0350625e4e72c561b91a633f4 77 Pfam PF13202 EF hand 49 65 0.0038 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 RD1_RS14645 f006e3b0350625e4e72c561b91a633f4 77 Pfam PF13202 EF hand 24 42 0.0096 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 RD1_RS14645 f006e3b0350625e4e72c561b91a633f4 77 Gene3D G3DSA:1.10.238.10 23 69 2.1E-7 T 23-04-2016 IPR011992 EF-hand domain pair RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 SUPERFAMILY SSF52540 56 343 2.63E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 Pfam PF00271 Helicase conserved C-terminal domain 223 322 2.7E-15 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 Pfam PF16124 RecQ zinc-binding 335 394 2.7E-10 T 23-04-2016 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 Gene3D G3DSA:3.40.50.300 6 188 5.9E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 PANTHER PTHR13710:SF81 6 592 1.9E-237 T 23-04-2016 RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 SUPERFAMILY SSF46785 394 519 1.77E-39 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 Pfam PF00570 HRDC domain 526 591 8.6E-20 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 SUPERFAMILY SSF47819 518 594 5.45E-22 T 23-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 Pfam PF00270 DEAD/DEAH box helicase 19 177 9.0E-17 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 Gene3D G3DSA:1.10.10.10 336 507 5.5E-48 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 7 454 6.6E-137 T 23-04-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 SMART SM00490 241 322 2.5E-26 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 6 592 1.3E-209 T 23-04-2016 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 Gene3D G3DSA:1.10.150.80 523 592 2.6E-16 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 SMART SM00341 521 601 1.5E-14 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 SMART SM00956 402 505 5.3E-48 T 23-04-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 PANTHER PTHR13710 6 592 1.9E-237 T 23-04-2016 RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 Pfam PF09382 RQC domain 397 506 6.8E-33 T 23-04-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 Gene3D G3DSA:3.40.50.300 198 335 6.8E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01680 b2efcf187a472e5e017bcbfcd0e530c6 680 SMART SM00487 13 207 3.8E-29 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD1_RS20550 4bfa3f9dc0a4036eeb6117ea4c6d5e9d 388 Gene3D G3DSA:3.40.720.10 14 342 2.9E-75 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RD1_RS20550 4bfa3f9dc0a4036eeb6117ea4c6d5e9d 388 Gene3D G3DSA:3.30.1120.10 343 386 1.4E-6 T 23-04-2016 RD1_RS20550 4bfa3f9dc0a4036eeb6117ea4c6d5e9d 388 Pfam PF00884 Sulfatase 13 316 5.1E-52 T 23-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 RD1_RS20550 4bfa3f9dc0a4036eeb6117ea4c6d5e9d 388 PANTHER PTHR10342 16 128 1.6E-131 T 23-04-2016 RD1_RS20550 4bfa3f9dc0a4036eeb6117ea4c6d5e9d 388 PANTHER PTHR10342 153 385 1.6E-131 T 23-04-2016 RD1_RS20550 4bfa3f9dc0a4036eeb6117ea4c6d5e9d 388 PANTHER PTHR10342:SF241 16 128 1.6E-131 T 23-04-2016 RD1_RS20550 4bfa3f9dc0a4036eeb6117ea4c6d5e9d 388 PANTHER PTHR10342:SF241 153 385 1.6E-131 T 23-04-2016 RD1_RS20550 4bfa3f9dc0a4036eeb6117ea4c6d5e9d 388 SUPERFAMILY SSF53649 8 116 9.89E-87 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RD1_RS20550 4bfa3f9dc0a4036eeb6117ea4c6d5e9d 388 SUPERFAMILY SSF53649 143 377 9.89E-87 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RD1_RS00310 c112f8e2e6d4cba7b11ff379e1c6feac 287 Pfam PF03625 Domain of unknown function DUF302 52 111 1.7E-6 T 23-04-2016 IPR005180 Domain of unknown function DUF302 RD1_RS00310 c112f8e2e6d4cba7b11ff379e1c6feac 287 Pfam PF03625 Domain of unknown function DUF302 193 255 4.0E-8 T 23-04-2016 IPR005180 Domain of unknown function DUF302 RD1_RS00310 c112f8e2e6d4cba7b11ff379e1c6feac 287 SUPERFAMILY SSF103247 160 267 4.45E-15 T 23-04-2016 IPR005180 Domain of unknown function DUF302 RD1_RS00310 c112f8e2e6d4cba7b11ff379e1c6feac 287 SUPERFAMILY SSF103247 27 139 4.45E-17 T 23-04-2016 IPR005180 Domain of unknown function DUF302 RD1_RS00310 c112f8e2e6d4cba7b11ff379e1c6feac 287 Gene3D G3DSA:3.30.310.70 27 138 6.6E-14 T 23-04-2016 IPR005180 Domain of unknown function DUF302 RD1_RS00310 c112f8e2e6d4cba7b11ff379e1c6feac 287 Gene3D G3DSA:3.30.310.70 162 263 1.5E-9 T 23-04-2016 IPR005180 Domain of unknown function DUF302 RD1_RS10985 0625d9b39110c8377bd4e6c5205c6afd 256 TIGRFAM TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK 3 254 1.0E-117 T 23-04-2016 IPR012700 Phosphonate C-P lyase system, PhnK RD1_RS10985 0625d9b39110c8377bd4e6c5205c6afd 256 Gene3D G3DSA:3.40.50.300 2 253 4.4E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10985 0625d9b39110c8377bd4e6c5205c6afd 256 Pfam PF00005 ABC transporter 22 177 8.7E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS10985 0625d9b39110c8377bd4e6c5205c6afd 256 SUPERFAMILY SSF52540 3 252 1.54E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10985 0625d9b39110c8377bd4e6c5205c6afd 256 PANTHER PTHR24220 6 255 1.7E-126 T 23-04-2016 RD1_RS10985 0625d9b39110c8377bd4e6c5205c6afd 256 PIRSF PIRSF037116 1 256 2.0E-143 T 23-04-2016 IPR012700 Phosphonate C-P lyase system, PhnK RD1_RS10985 0625d9b39110c8377bd4e6c5205c6afd 256 SMART SM00382 29 227 3.9E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS10985 0625d9b39110c8377bd4e6c5205c6afd 256 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS10985 0625d9b39110c8377bd4e6c5205c6afd 256 PANTHER PTHR24220:SF554 6 255 1.7E-126 T 23-04-2016 RD1_RS10110 79b2493f5294963c19f231ef79ea9803 681 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 603 619 3.9E-6 T 23-04-2016 RD1_RS10110 79b2493f5294963c19f231ef79ea9803 681 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 471 489 3.9E-6 T 23-04-2016 RD1_RS10110 79b2493f5294963c19f231ef79ea9803 681 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 389 408 3.9E-6 T 23-04-2016 RD1_RS10110 79b2493f5294963c19f231ef79ea9803 681 SUPERFAMILY SSF51395 1 370 1.53E-86 T 23-04-2016 RD1_RS10110 79b2493f5294963c19f231ef79ea9803 681 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 655 662 1.3E-5 T 23-04-2016 RD1_RS10110 79b2493f5294963c19f231ef79ea9803 681 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 388 410 1.3E-5 T 23-04-2016 RD1_RS10110 79b2493f5294963c19f231ef79ea9803 681 SUPERFAMILY SSF51905 366 679 3.37E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10110 79b2493f5294963c19f231ef79ea9803 681 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 341 1.9E-47 T 23-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RD1_RS10110 79b2493f5294963c19f231ef79ea9803 681 Gene3D G3DSA:3.20.20.70 2 377 1.3E-91 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS10110 79b2493f5294963c19f231ef79ea9803 681 PANTHER PTHR22893:SF25 6 429 9.5E-103 T 23-04-2016 RD1_RS10110 79b2493f5294963c19f231ef79ea9803 681 Pfam PF13450 NAD(P)-binding Rossmann-like domain 391 426 1.1E-7 T 23-04-2016 RD1_RS10110 79b2493f5294963c19f231ef79ea9803 681 Gene3D G3DSA:3.50.50.60 620 680 6.6E-23 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10110 79b2493f5294963c19f231ef79ea9803 681 Gene3D G3DSA:3.50.50.60 388 480 6.6E-23 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10110 79b2493f5294963c19f231ef79ea9803 681 Gene3D G3DSA:3.50.50.60 481 619 1.1E-20 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10110 79b2493f5294963c19f231ef79ea9803 681 PANTHER PTHR22893 6 429 9.5E-103 T 23-04-2016 RD1_RS17445 600c21b1c7f28c63ac1749cf9f7fbfcb 335 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 125 5.4E-26 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RD1_RS17445 600c21b1c7f28c63ac1749cf9f7fbfcb 335 Gene3D G3DSA:3.90.180.10 1 176 6.8E-45 T 23-04-2016 IPR011032 GroES-like RD1_RS17445 600c21b1c7f28c63ac1749cf9f7fbfcb 335 Pfam PF00107 Zinc-binding dehydrogenase 171 291 3.1E-8 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RD1_RS17445 600c21b1c7f28c63ac1749cf9f7fbfcb 335 PANTHER PTHR11695:SF429 12 335 6.2E-64 T 23-04-2016 RD1_RS17445 600c21b1c7f28c63ac1749cf9f7fbfcb 335 Gene3D G3DSA:3.40.50.720 177 278 2.1E-12 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17445 600c21b1c7f28c63ac1749cf9f7fbfcb 335 PANTHER PTHR11695 12 335 6.2E-64 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS17445 600c21b1c7f28c63ac1749cf9f7fbfcb 335 SUPERFAMILY SSF50129 1 170 1.67E-43 T 23-04-2016 IPR011032 GroES-like RD1_RS17445 600c21b1c7f28c63ac1749cf9f7fbfcb 335 SUPERFAMILY SSF51735 134 294 1.88E-20 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00335 bfbe7678fcdcfd43915371ef391ec294 573 SUPERFAMILY SSF56176 4 265 9.27E-70 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RD1_RS00335 bfbe7678fcdcfd43915371ef391ec294 573 PANTHER PTHR11748 235 310 3.5E-54 T 23-04-2016 RD1_RS00335 bfbe7678fcdcfd43915371ef391ec294 573 PANTHER PTHR11748 13 184 3.5E-54 T 23-04-2016 RD1_RS00335 bfbe7678fcdcfd43915371ef391ec294 573 Gene3D G3DSA:3.30.1370.20 426 510 2.7E-43 T 23-04-2016 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 RD1_RS00335 bfbe7678fcdcfd43915371ef391ec294 573 PIRSF PIRSF000101 1 560 1.0E-266 T 23-04-2016 IPR012256 D-lactate dehydrogenase GO:0004457|GO:0005887|GO:0006089|GO:0050660|GO:0051287 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 RD1_RS00335 bfbe7678fcdcfd43915371ef391ec294 573 Pfam PF09330 D-lactate dehydrogenase, membrane binding 271 558 2.1E-135 T 23-04-2016 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 RD1_RS00335 bfbe7678fcdcfd43915371ef391ec294 573 PANTHER PTHR11748:SF82 235 310 3.5E-54 T 23-04-2016 RD1_RS00335 bfbe7678fcdcfd43915371ef391ec294 573 PANTHER PTHR11748:SF82 13 184 3.5E-54 T 23-04-2016 RD1_RS00335 bfbe7678fcdcfd43915371ef391ec294 573 Gene3D G3DSA:3.30.465.10 100 261 3.2E-77 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RD1_RS00335 bfbe7678fcdcfd43915371ef391ec294 573 Gene3D G3DSA:3.30.43.10 2 96 1.0E-8 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RD1_RS00335 bfbe7678fcdcfd43915371ef391ec294 573 Gene3D G3DSA:3.30.70.610 262 303 7.3E-31 T 23-04-2016 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 RD1_RS00335 bfbe7678fcdcfd43915371ef391ec294 573 Gene3D G3DSA:3.30.70.610 370 425 7.3E-31 T 23-04-2016 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 RD1_RS00335 bfbe7678fcdcfd43915371ef391ec294 573 SUPERFAMILY SSF55103 269 558 4.8E-108 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RD1_RS00335 bfbe7678fcdcfd43915371ef391ec294 573 Pfam PF01565 FAD binding domain 42 159 3.6E-7 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RD1_RS04015 05f48ad54ded75dfcdc4af0afd08e433 320 PANTHER PTHR22550 1 312 2.1E-62 T 23-04-2016 RD1_RS04015 05f48ad54ded75dfcdc4af0afd08e433 320 SMART SM00327 90 285 1.3E-18 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS04015 05f48ad54ded75dfcdc4af0afd08e433 320 PANTHER PTHR22550:SF12 1 312 2.1E-62 T 23-04-2016 RD1_RS04015 05f48ad54ded75dfcdc4af0afd08e433 320 Gene3D G3DSA:3.40.50.410 90 276 1.6E-20 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS04015 05f48ad54ded75dfcdc4af0afd08e433 320 SUPERFAMILY SSF53300 88 262 1.63E-32 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS04015 05f48ad54ded75dfcdc4af0afd08e433 320 Pfam PF00092 von Willebrand factor type A domain 92 273 2.7E-22 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 PIRSF PIRSF002583 2 621 1.2E-212 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 184 4.5E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 PRINTS PR00775 90kDa heat shock protein signature 78 95 1.4E-62 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 PRINTS PR00775 90kDa heat shock protein signature 191 209 1.4E-62 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 PRINTS PR00775 90kDa heat shock protein signature 96 113 1.4E-62 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 PRINTS PR00775 90kDa heat shock protein signature 173 190 1.4E-62 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 PRINTS PR00775 90kDa heat shock protein signature 123 145 1.4E-62 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 PRINTS PR00775 90kDa heat shock protein signature 8 28 1.4E-62 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 PRINTS PR00775 90kDa heat shock protein signature 29 51 1.4E-62 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 SUPERFAMILY SSF110942 500 617 1.7E-29 T 23-04-2016 RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 28 37 - T 23-04-2016 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 Gene3D G3DSA:3.30.565.10 8 226 6.5E-83 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 Hamap MF_00505 Chaperone protein HtpG [htpG]. 5 618 30.642 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 PANTHER PTHR11528 7 621 1.7E-288 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 Pfam PF00183 Hsp90 protein 212 620 1.2E-118 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 PANTHER PTHR11528:SF44 7 621 1.7E-288 T 23-04-2016 RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 SUPERFAMILY SSF54211 219 471 1.14E-91 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 SMART SM00387 30 185 1.9E-6 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16970 8831f39f38f642d6a14e826aaea00f73 621 SUPERFAMILY SSF55874 8 216 7.73E-66 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS08575 19c636ca4019dc5a1f8e1661d5177b57 140 Pfam PF02082 Transcriptional regulator 1 82 1.2E-24 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type RD1_RS08575 19c636ca4019dc5a1f8e1661d5177b57 140 Gene3D G3DSA:1.10.10.10 1 134 1.0E-38 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS08575 19c636ca4019dc5a1f8e1661d5177b57 140 SUPERFAMILY SSF46785 3 134 3.91E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS08575 19c636ca4019dc5a1f8e1661d5177b57 140 PANTHER PTHR33221 2 131 3.2E-32 T 23-04-2016 RD1_RS14250 dda355960e1ce2dc937923736744971e 484 PANTHER PTHR11647:SF69 1 484 1.1E-269 T 23-04-2016 RD1_RS14250 dda355960e1ce2dc937923736744971e 484 Gene3D G3DSA:2.30.40.10 3 65 4.8E-30 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS14250 dda355960e1ce2dc937923736744971e 484 Gene3D G3DSA:3.20.20.140 66 373 3.7E-123 T 23-04-2016 RD1_RS14250 dda355960e1ce2dc937923736744971e 484 SUPERFAMILY SSF51338 346 453 2.47E-37 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS14250 dda355960e1ce2dc937923736744971e 484 PANTHER PTHR11647 1 484 1.1E-269 T 23-04-2016 RD1_RS14250 dda355960e1ce2dc937923736744971e 484 TIGRFAM TIGR02033 D-hydantoinase: dihydropyrimidinase 4 452 4.3E-182 T 23-04-2016 IPR011778 Hydantoinase/dihydropyrimidinase GO:0005737 Reactome: REACT_18266 RD1_RS14250 dda355960e1ce2dc937923736744971e 484 SUPERFAMILY SSF51556 51 380 2.58E-109 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS14250 dda355960e1ce2dc937923736744971e 484 SUPERFAMILY SSF51338 1 64 2.27E-16 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS14250 dda355960e1ce2dc937923736744971e 484 Pfam PF01979 Amidohydrolase family 47 420 1.3E-27 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RD1_RS14250 dda355960e1ce2dc937923736744971e 484 Gene3D G3DSA:2.30.40.10 374 453 2.5E-14 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS12390 6dab52744570b140d93586996667ed07 251 Pfam PF00005 ABC transporter 19 174 4.8E-19 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS12390 6dab52744570b140d93586996667ed07 251 PANTHER PTHR24220 3 250 3.9E-122 T 23-04-2016 RD1_RS12390 6dab52744570b140d93586996667ed07 251 PANTHER PTHR24220:SF85 3 250 3.9E-122 T 23-04-2016 RD1_RS12390 6dab52744570b140d93586996667ed07 251 SMART SM00382 28 232 0.0041 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS12390 6dab52744570b140d93586996667ed07 251 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS12390 6dab52744570b140d93586996667ed07 251 Gene3D G3DSA:3.40.50.300 1 241 4.3E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12390 6dab52744570b140d93586996667ed07 251 SUPERFAMILY SSF52540 2 238 9.16E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12390 6dab52744570b140d93586996667ed07 251 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 245 1.0E-107 T 23-04-2016 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 RD1_RS05590 5363445caf4f3c053472352b649509f2 221 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 156 1.2E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05590 5363445caf4f3c053472352b649509f2 221 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 1.2E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05590 5363445caf4f3c053472352b649509f2 221 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 38 206 7.5E-10 T 23-04-2016 RD1_RS05590 5363445caf4f3c053472352b649509f2 221 SUPERFAMILY SSF51735 1 221 1.1E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05590 5363445caf4f3c053472352b649509f2 221 PANTHER PTHR24322 137 170 6.8E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05590 5363445caf4f3c053472352b649509f2 221 PANTHER PTHR24322 6 117 6.8E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05590 5363445caf4f3c053472352b649509f2 221 Gene3D G3DSA:3.40.50.720 1 221 2.8E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05590 5363445caf4f3c053472352b649509f2 221 PANTHER PTHR24322:SF540 137 170 6.8E-28 T 23-04-2016 RD1_RS05590 5363445caf4f3c053472352b649509f2 221 PANTHER PTHR24322:SF540 6 117 6.8E-28 T 23-04-2016 RD1_RS14395 96e6c29d2ad91d8db40e87abd7108055 322 Gene3D G3DSA:3.40.800.10 24 314 2.4E-98 T 23-04-2016 IPR023696 Ureohydrolase domain RD1_RS14395 96e6c29d2ad91d8db40e87abd7108055 322 Pfam PF00491 Arginase family 46 311 1.1E-83 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS14395 96e6c29d2ad91d8db40e87abd7108055 322 PIRSF PIRSF036979 26 317 2.9E-85 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS14395 96e6c29d2ad91d8db40e87abd7108055 322 TIGRFAM TIGR01230 agmatinase: agmatinase 44 312 2.4E-63 T 23-04-2016 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|UniPathway: UPA00534 RD1_RS14395 96e6c29d2ad91d8db40e87abd7108055 322 PANTHER PTHR11358 46 314 7.2E-84 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS14395 96e6c29d2ad91d8db40e87abd7108055 322 SUPERFAMILY SSF52768 27 314 1.48E-88 T 23-04-2016 RD1_RS14395 96e6c29d2ad91d8db40e87abd7108055 322 ProSitePatterns PS01053 Arginase family signature. 242 263 - T 23-04-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Reactome: REACT_13 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 298 5.5E-46 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 23-04-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PANTHER PTHR22912 1 312 9.5E-151 T 23-04-2016 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 Gene3D G3DSA:3.50.50.60 120 234 4.3E-33 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 Gene3D G3DSA:3.50.50.60 6 119 3.7E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 Gene3D G3DSA:3.50.50.60 235 309 8.5E-18 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 3.1E-39 T 23-04-2016 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 3.1E-39 T 23-04-2016 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 3.1E-39 T 23-04-2016 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 235 251 3.1E-39 T 23-04-2016 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 3.1E-39 T 23-04-2016 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 SUPERFAMILY SSF51905 3 308 2.3E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 309 1.5E-117 T 23-04-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PANTHER PTHR22912:SF48 1 312 9.5E-151 T 23-04-2016 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 7.9E-72 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 7.9E-72 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 196 212 7.9E-72 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 7.9E-72 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 7.9E-72 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 7.9E-72 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 7.9E-72 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 272 290 7.9E-72 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RD1_RS16125 4ae36bb4e5fd22fe0649bba13556b960 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 237 258 7.9E-72 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RD1_RS09770 8b5b437e06f8dd388c9abf71b574de0e 285 SMART SM00028 237 270 93.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS09770 8b5b437e06f8dd388c9abf71b574de0e 285 SMART SM00028 174 207 0.44 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS09770 8b5b437e06f8dd388c9abf71b574de0e 285 SMART SM00028 73 106 94.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS09770 8b5b437e06f8dd388c9abf71b574de0e 285 SMART SM00028 140 173 370.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS09770 8b5b437e06f8dd388c9abf71b574de0e 285 SUPERFAMILY SSF48452 44 225 4.9E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS09770 8b5b437e06f8dd388c9abf71b574de0e 285 Gene3D G3DSA:1.25.40.10 150 284 3.3E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS09770 8b5b437e06f8dd388c9abf71b574de0e 285 Pfam PF13432 Tetratricopeptide repeat 54 97 5.5E-6 T 23-04-2016 RD1_RS09770 8b5b437e06f8dd388c9abf71b574de0e 285 PANTHER PTHR23083 249 285 2.4E-17 T 23-04-2016 RD1_RS09770 8b5b437e06f8dd388c9abf71b574de0e 285 PANTHER PTHR23083 54 219 2.4E-17 T 23-04-2016 RD1_RS09770 8b5b437e06f8dd388c9abf71b574de0e 285 Gene3D G3DSA:1.25.40.10 45 133 3.5E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS16915 2ad050c7cb6753b4f9ef8d394e4f28be 388 Gene3D G3DSA:3.30.1540.10 219 301 5.2E-27 T 23-04-2016 RD1_RS16915 2ad050c7cb6753b4f9ef8d394e4f28be 388 PANTHER PTHR24023 67 244 1.6E-28 T 23-04-2016 RD1_RS16915 2ad050c7cb6753b4f9ef8d394e4f28be 388 PANTHER PTHR24023:SF593 67 244 1.6E-28 T 23-04-2016 RD1_RS16915 2ad050c7cb6753b4f9ef8d394e4f28be 388 Gene3D G3DSA:3.40.50.10540 2 213 3.1E-103 T 23-04-2016 IPR023606 CoA-transferase family III domain RD1_RS16915 2ad050c7cb6753b4f9ef8d394e4f28be 388 Gene3D G3DSA:3.40.50.10540 302 387 3.1E-103 T 23-04-2016 IPR023606 CoA-transferase family III domain RD1_RS16915 2ad050c7cb6753b4f9ef8d394e4f28be 388 Pfam PF02515 CoA-transferase family III 4 362 9.1E-120 T 23-04-2016 IPR003673 CoA-transferase family III GO:0003824 RD1_RS16915 2ad050c7cb6753b4f9ef8d394e4f28be 388 SUPERFAMILY SSF89796 1 387 1.03E-123 T 23-04-2016 IPR023606 CoA-transferase family III domain RD1_RS15440 8ee3225ab14a4469f23b2700623155fc 476 Pfam PF01225 Mur ligase family, catalytic domain 24 80 7.2E-7 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15440 8ee3225ab14a4469f23b2700623155fc 476 Pfam PF02875 Mur ligase family, glutamate ligase domain 334 398 4.9E-8 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RD1_RS15440 8ee3225ab14a4469f23b2700623155fc 476 SUPERFAMILY SSF53623 102 311 7.33E-48 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15440 8ee3225ab14a4469f23b2700623155fc 476 SUPERFAMILY SSF53244 334 464 5.95E-30 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RD1_RS15440 8ee3225ab14a4469f23b2700623155fc 476 Gene3D G3DSA:3.40.1390.10 2 79 1.0E-18 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15440 8ee3225ab14a4469f23b2700623155fc 476 Gene3D G3DSA:3.90.190.20 334 468 6.7E-37 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RD1_RS15440 8ee3225ab14a4469f23b2700623155fc 476 SUPERFAMILY SSF63418 3 95 3.01E-18 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15440 8ee3225ab14a4469f23b2700623155fc 476 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 1 466 30.614 T 23-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15440 8ee3225ab14a4469f23b2700623155fc 476 PANTHER PTHR23135 10 466 3.4E-121 T 23-04-2016 RD1_RS15440 8ee3225ab14a4469f23b2700623155fc 476 Gene3D G3DSA:3.40.1190.10 83 308 3.2E-55 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15440 8ee3225ab14a4469f23b2700623155fc 476 Pfam PF08245 Mur ligase middle domain 106 294 1.7E-42 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15440 8ee3225ab14a4469f23b2700623155fc 476 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 28 464 7.1E-106 T 23-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS15440 8ee3225ab14a4469f23b2700623155fc 476 PANTHER PTHR23135:SF3 10 466 3.4E-121 T 23-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS05595 d3ecdfd8c2c9004cfbcbc298e98f86d3 509 Gene3D G3DSA:1.25.40.80 222 315 5.9E-11 T 23-04-2016 RD1_RS05595 d3ecdfd8c2c9004cfbcbc298e98f86d3 509 PANTHER PTHR38657:SF1 1 508 1.9E-211 T 23-04-2016 RD1_RS05595 d3ecdfd8c2c9004cfbcbc298e98f86d3 509 PANTHER PTHR38657 1 508 1.9E-211 T 23-04-2016 RD1_RS05595 d3ecdfd8c2c9004cfbcbc298e98f86d3 509 Pfam PF04244 Deoxyribodipyrimidine photo-lyase-related protein 6 224 8.4E-80 T 23-04-2016 IPR007357 Deoxyribodipyrimidine photolyase-related protein RD1_RS05595 d3ecdfd8c2c9004cfbcbc298e98f86d3 509 SUPERFAMILY SSF48173 228 491 1.83E-57 T 23-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain RD1_RS09205 03597923bf4f7a5530954651abe8d8b0 294 Pfam PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein 122 282 1.2E-22 T 23-04-2016 IPR018770 5-bromo-4-chloroindolyl phosphate hydrolysis protein RD1_RS01295 08e9ec6c1951b52e1db2f7f0ae9f3244 325 SUPERFAMILY SSF161098 41 317 9.03E-48 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS01295 08e9ec6c1951b52e1db2f7f0ae9f3244 325 PANTHER PTHR30193 18 325 2.1E-74 T 23-04-2016 RD1_RS01295 08e9ec6c1951b52e1db2f7f0ae9f3244 325 Gene3D G3DSA:1.10.3720.10 46 321 5.7E-44 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS01295 08e9ec6c1951b52e1db2f7f0ae9f3244 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 124 317 9.7E-9 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS01295 08e9ec6c1951b52e1db2f7f0ae9f3244 325 PANTHER PTHR30193:SF10 18 325 2.1E-74 T 23-04-2016 RD1_RS18405 0095d0309375f5380dfa214088997559 232 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 4.0E-97 T 23-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RD1_RS18405 0095d0309375f5380dfa214088997559 232 SUPERFAMILY SSF56808 6 225 9.29E-79 T 23-04-2016 IPR023674 Ribosomal protein L1-like RD1_RS18405 0095d0309375f5380dfa214088997559 232 Gene3D G3DSA:3.40.50.790 69 159 2.5E-41 T 23-04-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich RD1_RS18405 0095d0309375f5380dfa214088997559 232 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 41.63 T 23-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RD1_RS18405 0095d0309375f5380dfa214088997559 232 ProSitePatterns PS01199 Ribosomal protein L1 signature. 120 139 - T 23-04-2016 IPR023673 Ribosomal protein L1, conserved site RD1_RS18405 0095d0309375f5380dfa214088997559 232 Gene3D G3DSA:3.30.190.20 161 226 7.2E-44 T 23-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 RD1_RS18405 0095d0309375f5380dfa214088997559 232 Gene3D G3DSA:3.30.190.20 19 68 7.2E-44 T 23-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 RD1_RS18405 0095d0309375f5380dfa214088997559 232 PANTHER PTHR23105:SF51 23 227 5.1E-82 T 23-04-2016 RD1_RS18405 0095d0309375f5380dfa214088997559 232 Pfam PF00687 Ribosomal protein L1p/L10e family 31 220 6.2E-54 T 23-04-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein RD1_RS18405 0095d0309375f5380dfa214088997559 232 PIRSF PIRSF002155 1 227 2.9E-76 T 23-04-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 RD1_RS18405 0095d0309375f5380dfa214088997559 232 PANTHER PTHR23105 23 227 5.1E-82 T 23-04-2016 RD1_RS05705 ce32e972aaa0f552063023395a3be2df 551 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 5 548 1.3E-280 T 23-04-2016 IPR022374 ABC transporter, ATP-binding protein, ChvD RD1_RS05705 ce32e972aaa0f552063023395a3be2df 551 Gene3D G3DSA:3.40.50.300 10 284 5.6E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05705 ce32e972aaa0f552063023395a3be2df 551 SMART SM00382 33 230 3.0E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS05705 ce32e972aaa0f552063023395a3be2df 551 SMART SM00382 344 513 1.7E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS05705 ce32e972aaa0f552063023395a3be2df 551 PANTHER PTHR19211:SF7 5 551 0.0 T 23-04-2016 RD1_RS05705 ce32e972aaa0f552063023395a3be2df 551 SUPERFAMILY SSF52540 10 241 2.41E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05705 ce32e972aaa0f552063023395a3be2df 551 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS05705 ce32e972aaa0f552063023395a3be2df 551 PANTHER PTHR19211 5 551 0.0 T 23-04-2016 RD1_RS05705 ce32e972aaa0f552063023395a3be2df 551 SUPERFAMILY SSF52540 324 516 2.71E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05705 ce32e972aaa0f552063023395a3be2df 551 Gene3D G3DSA:3.40.50.300 318 528 6.6E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05705 ce32e972aaa0f552063023395a3be2df 551 Pfam PF00005 ABC transporter 336 469 3.9E-22 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS05705 ce32e972aaa0f552063023395a3be2df 551 Pfam PF00005 ABC transporter 25 187 4.4E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS05705 ce32e972aaa0f552063023395a3be2df 551 Pfam PF12848 ABC transporter 226 299 9.5E-13 T 23-04-2016 IPR032781 ABC-transporter extension domain RD1_RS03850 7f2a720dd113d9a76ff7ac5a8cfa3028 241 PANTHER PTHR30269 8 228 3.1E-14 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RD1_RS03850 7f2a720dd113d9a76ff7ac5a8cfa3028 241 PANTHER PTHR30269:SF14 8 228 3.1E-14 T 23-04-2016 RD1_RS03850 7f2a720dd113d9a76ff7ac5a8cfa3028 241 Pfam PF01925 Sulfite exporter TauE/SafE 16 230 6.8E-24 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RD1_RS12500 9612cdec855479aaa10d79758346c138 223 PANTHER PTHR11054 2 221 1.2E-27 T 23-04-2016 RD1_RS12500 9612cdec855479aaa10d79758346c138 223 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 10 221 2.0E-49 T 23-04-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 RD1_RS12500 9612cdec855479aaa10d79758346c138 223 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 6 222 4.3E-45 T 23-04-2016 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31|UniPathway: UPA00115 RD1_RS12500 9612cdec855479aaa10d79758346c138 223 Gene3D G3DSA:3.40.50.1360 1 221 1.9E-46 T 23-04-2016 RD1_RS12500 9612cdec855479aaa10d79758346c138 223 SUPERFAMILY SSF100950 1 222 5.23E-52 T 23-04-2016 RD1_RS10005 33952ffd221058a028fd3e36526a5680 653 Pfam PF02653 Branched-chain amino acid transport system / permease component 365 634 1.9E-54 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS10005 33952ffd221058a028fd3e36526a5680 653 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 363 649 2.2E-114 T 23-04-2016 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type RD1_RS10005 33952ffd221058a028fd3e36526a5680 653 PANTHER PTHR11795:SF349 125 652 3.7E-113 T 23-04-2016 RD1_RS10005 33952ffd221058a028fd3e36526a5680 653 PANTHER PTHR11795 125 652 3.7E-113 T 23-04-2016 RD1_RS01195 db2695a06fac7ccf52d0254fafe5e80f 237 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 5 120 3.6E-37 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RD1_RS01195 db2695a06fac7ccf52d0254fafe5e80f 237 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 6 215 2.3E-62 T 23-04-2016 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 RD1_RS01195 db2695a06fac7ccf52d0254fafe5e80f 237 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 164 232 2.7E-15 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RD1_RS01195 db2695a06fac7ccf52d0254fafe5e80f 237 SUPERFAMILY SSF117143 78 196 9.81E-24 T 23-04-2016 RD1_RS01195 db2695a06fac7ccf52d0254fafe5e80f 237 PANTHER PTHR30435 1 232 1.2E-45 T 23-04-2016 RD1_RS01195 db2695a06fac7ccf52d0254fafe5e80f 237 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 23-04-2016 IPR019776 Flagellar basal body rod protein, conserved site RD1_RS01195 db2695a06fac7ccf52d0254fafe5e80f 237 Pfam PF00460 Flagella basal body rod protein 17 35 2.2E-5 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RD1_RS02905 56eae6f2ff88bfb9e124c843ebcfac9e 449 SUPERFAMILY SSF51905 252 380 6.48E-7 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02905 56eae6f2ff88bfb9e124c843ebcfac9e 449 Pfam PF00743 Flavin-binding monooxygenase-like 4 228 3.5E-31 T 23-04-2016 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 RD1_RS02905 56eae6f2ff88bfb9e124c843ebcfac9e 449 Pfam PF00743 Flavin-binding monooxygenase-like 245 382 1.4E-8 T 23-04-2016 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 RD1_RS02905 56eae6f2ff88bfb9e124c843ebcfac9e 449 PANTHER PTHR23023 1 382 1.1E-104 T 23-04-2016 RD1_RS02905 56eae6f2ff88bfb9e124c843ebcfac9e 449 SUPERFAMILY SSF51905 1 244 6.29E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02905 56eae6f2ff88bfb9e124c843ebcfac9e 449 Gene3D G3DSA:3.50.50.60 170 272 6.4E-24 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02905 56eae6f2ff88bfb9e124c843ebcfac9e 449 PANTHER PTHR23023:SF124 1 382 1.1E-104 T 23-04-2016 RD1_RS02905 56eae6f2ff88bfb9e124c843ebcfac9e 449 Gene3D G3DSA:3.50.50.60 273 424 3.2E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02905 56eae6f2ff88bfb9e124c843ebcfac9e 449 Gene3D G3DSA:3.50.50.60 2 169 3.2E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 Gene3D G3DSA:3.40.50.620 618 647 5.2E-148 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 Gene3D G3DSA:3.40.50.620 431 583 5.2E-148 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 Gene3D G3DSA:3.40.50.620 2 225 5.2E-148 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 SUPERFAMILY SSF50677 225 422 1.36E-40 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 Pfam PF09334 tRNA synthetases class I (M) 36 171 1.7E-14 T 23-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 3 848 21.679 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 PANTHER PTHR11946:SF7 618 848 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 PANTHER PTHR11946:SF7 242 267 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 PANTHER PTHR11946:SF7 287 584 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 PANTHER PTHR11946:SF7 3 205 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 41 52 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 SUPERFAMILY SSF47323 667 848 3.74E-29 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 220 403 4.1E-56 T 23-04-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 Pfam PF08264 Anticodon-binding domain of tRNA 692 811 1.8E-13 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 Gene3D G3DSA:3.90.740.10 226 430 7.8E-37 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 PRINTS PR00985 Leucyl-tRNA synthetase signature 494 512 2.2E-43 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 PRINTS PR00985 Leucyl-tRNA synthetase signature 184 197 2.2E-43 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 PRINTS PR00985 Leucyl-tRNA synthetase signature 214 233 2.2E-43 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 PRINTS PR00985 Leucyl-tRNA synthetase signature 126 143 2.2E-43 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 PRINTS PR00985 Leucyl-tRNA synthetase signature 567 577 2.2E-43 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 PRINTS PR00985 Leucyl-tRNA synthetase signature 532 554 2.2E-43 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 PRINTS PR00985 Leucyl-tRNA synthetase signature 152 168 2.2E-43 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 Gene3D G3DSA:1.10.730.10 648 784 1.8E-33 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 619 658 1.0E-7 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 425 582 2.3E-6 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 848 8.7E-286 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 PANTHER PTHR11946 618 848 0.0 T 23-04-2016 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 PANTHER PTHR11946 242 267 0.0 T 23-04-2016 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 PANTHER PTHR11946 287 584 0.0 T 23-04-2016 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 PANTHER PTHR11946 3 205 0.0 T 23-04-2016 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 SUPERFAMILY SSF52374 3 225 4.38E-142 T 23-04-2016 RD1_RS00220 1e43b7b751e01f16e066f80f11c56e22 848 SUPERFAMILY SSF52374 423 666 4.38E-142 T 23-04-2016 RD1_RS04060 1bf396fbffd91b9a439d97ab644290ab 270 Gene3D G3DSA:2.60.40.10 161 262 1.3E-37 T 23-04-2016 IPR013783 Immunoglobulin-like fold RD1_RS04060 1bf396fbffd91b9a439d97ab644290ab 270 Pfam PF13501 Sulfur oxidation protein SoxY 41 146 3.7E-26 T 23-04-2016 IPR032711 Ig-like SoxY domain RD1_RS04060 1bf396fbffd91b9a439d97ab644290ab 270 SUPERFAMILY SSF81296 161 263 1.96E-28 T 23-04-2016 IPR014756 Immunoglobulin E-set RD1_RS04060 1bf396fbffd91b9a439d97ab644290ab 270 Pfam PF08770 Sulphur oxidation protein SoxZ 180 262 9.5E-25 T 23-04-2016 IPR014880 Sulphur oxidation protein SoxZ RD1_RS04060 1bf396fbffd91b9a439d97ab644290ab 270 TIGRFAM TIGR04557 fuse_rel_SoxYZ: quinoprotein dehydrogenase-associated SoxYZ-like carrier 35 261 3.1E-85 T 23-04-2016 IPR030831 Quinoprotein dehydrogenase-associated SoxYZ-like carrier RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 Gene3D G3DSA:3.30.1360.120 575 671 2.5E-34 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 Gene3D G3DSA:3.30.1360.120 419 488 2.5E-34 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 Gene3D G3DSA:3.30.9.10 220 322 2.0E-43 T 23-04-2016 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 Gene3D G3DSA:3.30.9.10 86 140 2.0E-43 T 23-04-2016 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 PANTHER PTHR13847:SF193 3 443 7.3E-128 T 23-04-2016 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 Pfam PF16350 FAD dependent oxidoreductase central domain 368 420 8.1E-16 T 23-04-2016 IPR032503 FAD dependent oxidoreductase, central domain RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 Gene3D G3DSA:3.30.70.1400 490 555 3.8E-8 T 23-04-2016 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 Gene3D G3DSA:2.40.30.110 714 793 7.5E-18 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 Pfam PF01266 FAD dependent oxidoreductase 7 364 1.1E-54 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 SUPERFAMILY SSF103025 416 711 7.53E-84 T 23-04-2016 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 700 793 2.6E-15 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 SUPERFAMILY SSF51905 6 220 1.0E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 SUPERFAMILY SSF51905 326 385 1.0E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 PANTHER PTHR13847 3 443 7.3E-128 T 23-04-2016 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 Pfam PF01571 Aminomethyltransferase folate-binding domain 423 693 4.6E-61 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 SUPERFAMILY SSF101790 732 807 7.03E-18 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 Gene3D G3DSA:3.50.50.60 2 82 3.3E-57 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 Gene3D G3DSA:3.50.50.60 141 219 3.3E-57 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 Gene3D G3DSA:3.50.50.60 326 383 3.3E-57 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS14215 83663ae0cb143c057bd65c162e20a26b 807 SUPERFAMILY SSF54373 220 324 5.1E-30 T 23-04-2016 RD1_RS11195 28402beb7db9f767ab35233f941aaee7 102 Gene3D G3DSA:1.20.1290.10 10 99 5.4E-14 T 23-04-2016 IPR029032 AhpD-like RD1_RS11195 28402beb7db9f767ab35233f941aaee7 102 Pfam PF02627 Carboxymuconolactone decarboxylase family 16 99 6.3E-9 T 23-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RD1_RS11195 28402beb7db9f767ab35233f941aaee7 102 PANTHER PTHR33930 1 100 1.2E-19 T 23-04-2016 RD1_RS11195 28402beb7db9f767ab35233f941aaee7 102 PANTHER PTHR33930:SF2 1 100 1.2E-19 T 23-04-2016 RD1_RS11195 28402beb7db9f767ab35233f941aaee7 102 SUPERFAMILY SSF69118 2 100 2.22E-16 T 23-04-2016 IPR029032 AhpD-like RD1_RS09150 3ffc172a236ef35d9ddd522099c9ca84 270 SUPERFAMILY SSF161098 61 260 1.83E-22 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS09150 3ffc172a236ef35d9ddd522099c9ca84 270 PANTHER PTHR30465 7 256 3.1E-62 T 23-04-2016 RD1_RS09150 3ffc172a236ef35d9ddd522099c9ca84 270 PANTHER PTHR30465:SF10 7 256 3.1E-62 T 23-04-2016 RD1_RS09150 3ffc172a236ef35d9ddd522099c9ca84 270 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 6 31 7.9E-6 T 23-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RD1_RS09150 3ffc172a236ef35d9ddd522099c9ca84 270 Gene3D G3DSA:1.10.3720.10 61 262 3.0E-22 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS09150 3ffc172a236ef35d9ddd522099c9ca84 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 259 1.3E-28 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08270 3c7ae0100f1e0dc02f920906765649c5 651 Pfam PF10410 DnaB-helicase binding domain of primase 375 418 2.5E-5 T 23-04-2016 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 RD1_RS08270 3c7ae0100f1e0dc02f920906765649c5 651 Pfam PF01807 CHC2 zinc finger 7 102 5.6E-26 T 23-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RD1_RS08270 3c7ae0100f1e0dc02f920906765649c5 651 Gene3D G3DSA:3.40.1360.10 244 369 1.0E-43 T 23-04-2016 RD1_RS08270 3c7ae0100f1e0dc02f920906765649c5 651 SMART SM00400 39 93 4.0E-26 T 23-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RD1_RS08270 3c7ae0100f1e0dc02f920906765649c5 651 Pfam PF13155 Toprim-like 265 353 9.8E-15 T 23-04-2016 RD1_RS08270 3c7ae0100f1e0dc02f920906765649c5 651 SUPERFAMILY SSF57783 2 104 3.91E-30 T 23-04-2016 RD1_RS08270 3c7ae0100f1e0dc02f920906765649c5 651 Gene3D G3DSA:3.90.580.10 3 104 1.3E-32 T 23-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RD1_RS08270 3c7ae0100f1e0dc02f920906765649c5 651 SUPERFAMILY SSF56731 117 421 2.22E-100 T 23-04-2016 RD1_RS08270 3c7ae0100f1e0dc02f920906765649c5 651 Pfam PF08275 DNA primase catalytic core, N-terminal domain 127 254 1.6E-40 T 23-04-2016 IPR013264 DNA primase, catalytic core, N-terminal RD1_RS08270 3c7ae0100f1e0dc02f920906765649c5 651 PANTHER PTHR30313 1 438 1.9E-117 T 23-04-2016 RD1_RS08270 3c7ae0100f1e0dc02f920906765649c5 651 TIGRFAM TIGR01391 dnaG: DNA primase 5 420 1.1E-121 T 23-04-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 RD1_RS08270 3c7ae0100f1e0dc02f920906765649c5 651 SMART SM00493 262 333 4.2E-10 T 23-04-2016 IPR006171 Toprim domain RD1_RS08270 3c7ae0100f1e0dc02f920906765649c5 651 Hamap MF_00974 DNA primase [dnaG]. 2 543 24.17 T 23-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RD1_RS08270 3c7ae0100f1e0dc02f920906765649c5 651 Gene3D G3DSA:3.90.980.10 116 243 1.3E-40 T 23-04-2016 IPR013264 DNA primase, catalytic core, N-terminal RD1_RS08270 3c7ae0100f1e0dc02f920906765649c5 651 PIRSF PIRSF002811 1 614 1.2E-131 T 23-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 110 192 7.7E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 206 281 2.3E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 6 288 6.1E-123 T 23-04-2016 IPR004678 Cytochrome c oxidase cbb3-type, subunit III UniPathway: UPA00705 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 SUPERFAMILY SSF46626 199 287 5.65E-25 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 PANTHER PTHR33751:SF1 74 288 1.5E-71 T 23-04-2016 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 PANTHER PTHR33751:SF1 1 54 1.5E-71 T 23-04-2016 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 PRINTS PR00605 Class IC cytochrome C signature 215 226 1.4E-6 T 23-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 PRINTS PR00605 Class IC cytochrome C signature 259 281 1.4E-6 T 23-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 Gene3D G3DSA:1.10.760.10 200 287 1.2E-24 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 Gene3D G3DSA:1.10.760.10 35 57 7.9E-28 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 Gene3D G3DSA:1.10.760.10 104 197 7.9E-28 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 PANTHER PTHR33751 74 288 1.5E-71 T 23-04-2016 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 PANTHER PTHR33751 1 54 1.5E-71 T 23-04-2016 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 PIRSF PIRSF000006 2 288 3.2E-111 T 23-04-2016 IPR004678 Cytochrome c oxidase cbb3-type, subunit III UniPathway: UPA00705 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 13 56 1.3E-24 T 23-04-2016 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal UniPathway: UPA00705 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 SUPERFAMILY SSF46626 100 197 5.47E-29 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS05875 aa63ab0342ba2cb8f9bc9d81ba46da2b 288 SUPERFAMILY SSF46626 30 64 5.47E-29 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07670 cdb8406074c04e2f4c6bab48dbeb7256 459 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 28 453 1.9E-162 T 23-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 RD1_RS07670 cdb8406074c04e2f4c6bab48dbeb7256 459 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 27 455 57.216 T 23-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 RD1_RS07670 cdb8406074c04e2f4c6bab48dbeb7256 459 SMART SM00729 158 379 7.8E-39 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RD1_RS07670 cdb8406074c04e2f4c6bab48dbeb7256 459 Pfam PF04055 Radical SAM superfamily 164 337 2.4E-25 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RD1_RS07670 cdb8406074c04e2f4c6bab48dbeb7256 459 Gene3D G3DSA:2.40.50.140 395 455 1.4E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS07670 cdb8406074c04e2f4c6bab48dbeb7256 459 PANTHER PTHR11918 22 455 5.5E-206 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RD1_RS07670 cdb8406074c04e2f4c6bab48dbeb7256 459 PANTHER PTHR11918:SF57 22 455 5.5E-206 T 23-04-2016 RD1_RS07670 cdb8406074c04e2f4c6bab48dbeb7256 459 SUPERFAMILY SSF102114 140 383 6.02E-41 T 23-04-2016 RD1_RS07670 cdb8406074c04e2f4c6bab48dbeb7256 459 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 29 453 1.6E-91 T 23-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 RD1_RS07670 cdb8406074c04e2f4c6bab48dbeb7256 459 Pfam PF00919 Uncharacterized protein family UPF0004 30 116 1.8E-17 T 23-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 RD1_RS07670 cdb8406074c04e2f4c6bab48dbeb7256 459 Gene3D G3DSA:3.80.30.20 156 388 4.1E-61 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RD1_RS05530 b6bd600b05477d5a8b7e45f0fa8ecf99 397 Pfam PF02441 Flavoprotein 5 133 1.5E-31 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 RD1_RS05530 b6bd600b05477d5a8b7e45f0fa8ecf99 397 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 184 368 2.0E-66 T 23-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 RD1_RS05530 b6bd600b05477d5a8b7e45f0fa8ecf99 397 Gene3D G3DSA:3.40.50.1950 2 184 3.9E-64 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 RD1_RS05530 b6bd600b05477d5a8b7e45f0fa8ecf99 397 SUPERFAMILY SSF102645 182 396 1.09E-71 T 23-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 RD1_RS05530 b6bd600b05477d5a8b7e45f0fa8ecf99 397 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 3 390 4.9E-123 T 23-04-2016 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|UniPathway: UPA00241|UniPathway: UPA00241 RD1_RS05530 b6bd600b05477d5a8b7e45f0fa8ecf99 397 Gene3D G3DSA:3.40.50.10300 185 396 2.1E-80 T 23-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 RD1_RS05530 b6bd600b05477d5a8b7e45f0fa8ecf99 397 PANTHER PTHR14359 1 396 9.3E-160 T 23-04-2016 RD1_RS05530 b6bd600b05477d5a8b7e45f0fa8ecf99 397 SUPERFAMILY SSF52507 1 180 1.96E-58 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 RD1_RS05530 b6bd600b05477d5a8b7e45f0fa8ecf99 397 PANTHER PTHR14359:SF20 1 396 9.3E-160 T 23-04-2016 RD1_RS06930 26b8e34cebf8e6eb51df5d65f4a2ed09 285 Pfam PF01380 SIS domain 130 256 1.9E-18 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RD1_RS06930 26b8e34cebf8e6eb51df5d65f4a2ed09 285 PANTHER PTHR30514:SF4 4 249 7.4E-35 T 23-04-2016 RD1_RS06930 26b8e34cebf8e6eb51df5d65f4a2ed09 285 SUPERFAMILY SSF46689 3 80 1.97E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS06930 26b8e34cebf8e6eb51df5d65f4a2ed09 285 Pfam PF01418 Helix-turn-helix domain, rpiR family 4 78 1.7E-15 T 23-04-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 RD1_RS06930 26b8e34cebf8e6eb51df5d65f4a2ed09 285 PANTHER PTHR30514 4 249 7.4E-35 T 23-04-2016 RD1_RS06930 26b8e34cebf8e6eb51df5d65f4a2ed09 285 Gene3D G3DSA:3.40.50.10490 109 261 7.2E-11 T 23-04-2016 RD1_RS06930 26b8e34cebf8e6eb51df5d65f4a2ed09 285 SUPERFAMILY SSF53697 107 275 1.64E-15 T 23-04-2016 RD1_RS06930 26b8e34cebf8e6eb51df5d65f4a2ed09 285 Gene3D G3DSA:1.10.10.10 3 79 2.3E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS00110 4a2c18dd13d3fd24abc813be2fc8bbb5 390 Gene3D G3DSA:3.40.47.10 140 192 3.3E-55 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS00110 4a2c18dd13d3fd24abc813be2fc8bbb5 390 Gene3D G3DSA:3.40.47.10 274 389 3.3E-55 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS00110 4a2c18dd13d3fd24abc813be2fc8bbb5 390 Gene3D G3DSA:3.40.47.10 3 121 7.5E-64 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS00110 4a2c18dd13d3fd24abc813be2fc8bbb5 390 Gene3D G3DSA:3.40.47.10 193 273 7.5E-64 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS00110 4a2c18dd13d3fd24abc813be2fc8bbb5 390 ProSitePatterns PS00099 Thiolases active site. 371 384 - T 23-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 RD1_RS00110 4a2c18dd13d3fd24abc813be2fc8bbb5 390 Pfam PF02803 Thiolase, C-terminal domain 268 389 1.9E-42 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RD1_RS00110 4a2c18dd13d3fd24abc813be2fc8bbb5 390 PIRSF PIRSF000429 1 390 2.7E-108 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RD1_RS00110 4a2c18dd13d3fd24abc813be2fc8bbb5 390 PANTHER PTHR18919 1 390 4.7E-201 T 23-04-2016 RD1_RS00110 4a2c18dd13d3fd24abc813be2fc8bbb5 390 Pfam PF00108 Thiolase, N-terminal domain 4 258 2.0E-80 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RD1_RS00110 4a2c18dd13d3fd24abc813be2fc8bbb5 390 PANTHER PTHR18919:SF110 1 390 4.7E-201 T 23-04-2016 RD1_RS00110 4a2c18dd13d3fd24abc813be2fc8bbb5 390 SUPERFAMILY SSF53901 270 389 4.28E-40 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS00110 4a2c18dd13d3fd24abc813be2fc8bbb5 390 SUPERFAMILY SSF53901 3 266 3.16E-73 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS00110 4a2c18dd13d3fd24abc813be2fc8bbb5 390 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 388 8.4E-119 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RD1_RS15835 6b92b2a99e4cce79c99f867ab187d262 356 PANTHER PTHR10245:SF22 4 265 6.2E-16 T 23-04-2016 RD1_RS15835 6b92b2a99e4cce79c99f867ab187d262 356 PANTHER PTHR10245 4 265 6.2E-16 T 23-04-2016 RD1_RS15835 6b92b2a99e4cce79c99f867ab187d262 356 Pfam PF01381 Helix-turn-helix 7 60 1.5E-12 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS15835 6b92b2a99e4cce79c99f867ab187d262 356 SUPERFAMILY SSF47413 4 66 1.03E-12 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS15835 6b92b2a99e4cce79c99f867ab187d262 356 SMART SM00530 6 60 3.5E-11 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS15835 6b92b2a99e4cce79c99f867ab187d262 356 Pfam PF06114 Domain of unknown function (DUF955) 150 264 1.3E-22 T 23-04-2016 IPR010359 HTH domain, IrrE-type RD1_RS15835 6b92b2a99e4cce79c99f867ab187d262 356 Gene3D G3DSA:1.10.260.40 5 69 2.6E-15 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS06415 adf0a3606f99b10877dd7004b0284bbe 252 PANTHER PTHR21294 1 252 3.0E-151 T 23-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 RD1_RS06415 adf0a3606f99b10877dd7004b0284bbe 252 PIRSF PIRSF000090 1 252 5.8E-85 T 23-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 RD1_RS06415 adf0a3606f99b10877dd7004b0284bbe 252 Pfam PF01012 Electron transfer flavoprotein domain 29 210 3.1E-45 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RD1_RS06415 adf0a3606f99b10877dd7004b0284bbe 252 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 159 179 - T 23-04-2016 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 RD1_RS06415 adf0a3606f99b10877dd7004b0284bbe 252 Gene3D G3DSA:3.40.50.620 1 248 1.5E-104 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS06415 adf0a3606f99b10877dd7004b0284bbe 252 SUPERFAMILY SSF52402 1 246 2.23E-87 T 23-04-2016 RD1_RS06415 adf0a3606f99b10877dd7004b0284bbe 252 SMART SM00893 23 215 1.5E-66 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RD1_RS06415 adf0a3606f99b10877dd7004b0284bbe 252 PANTHER PTHR21294:SF8 1 252 3.0E-151 T 23-04-2016 RD1_RS13305 26c7d48f310ebd933a9a770496e48dd6 387 Pfam PF01168 Alanine racemase, N-terminal domain 34 263 1.2E-27 T 23-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RD1_RS13305 26c7d48f310ebd933a9a770496e48dd6 387 PANTHER PTHR28004 16 387 1.9E-130 T 23-04-2016 RD1_RS13305 26c7d48f310ebd933a9a770496e48dd6 387 SMART SM01119 284 370 5.8E-34 T 23-04-2016 IPR026956 D-serine dehydratase-like domain RD1_RS13305 26c7d48f310ebd933a9a770496e48dd6 387 SUPERFAMILY SSF51419 34 267 1.5E-36 T 23-04-2016 IPR029066 PLP-binding barrel RD1_RS13305 26c7d48f310ebd933a9a770496e48dd6 387 Pfam PF14031 Putative serine dehydratase domain 284 369 1.5E-21 T 23-04-2016 IPR026956 D-serine dehydratase-like domain RD1_RS13305 26c7d48f310ebd933a9a770496e48dd6 387 Gene3D G3DSA:3.20.20.10 74 267 1.7E-16 T 23-04-2016 IPR029066 PLP-binding barrel RD1_RS13305 26c7d48f310ebd933a9a770496e48dd6 387 PANTHER PTHR28004:SF3 16 387 1.9E-130 T 23-04-2016 RD1_RS17110 fdfde8bfc22fa6fd5b48a33e620931f7 254 Gene3D G3DSA:2.120.10.30 79 229 3.9E-15 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RD1_RS17110 fdfde8bfc22fa6fd5b48a33e620931f7 254 SUPERFAMILY SSF50956 27 248 5.23E-21 T 23-04-2016 RD1_RS11230 542b9eaabdb4f3ed148d43fe4bd3d64e 234 Pfam PF02613 Nitrate reductase delta subunit 36 160 5.1E-13 T 23-04-2016 IPR020945 DMSO/Nitrate reductase chaperone RD1_RS11230 542b9eaabdb4f3ed148d43fe4bd3d64e 234 PANTHER PTHR30598:SF1 4 220 6.1E-47 T 23-04-2016 RD1_RS11230 542b9eaabdb4f3ed148d43fe4bd3d64e 234 SUPERFAMILY SSF89155 4 165 1.12E-30 T 23-04-2016 IPR020945 DMSO/Nitrate reductase chaperone RD1_RS11230 542b9eaabdb4f3ed148d43fe4bd3d64e 234 Gene3D G3DSA:1.10.3480.10 45 124 2.3E-5 T 23-04-2016 IPR020945 DMSO/Nitrate reductase chaperone RD1_RS11230 542b9eaabdb4f3ed148d43fe4bd3d64e 234 TIGRFAM TIGR00684 narJ: nitrate reductase molybdenum cofactor assembly chaperone 9 162 2.1E-32 T 23-04-2016 IPR003765 Nitrate reductase chaperone, NarJ GO:0051082|GO:0051131 RD1_RS11230 542b9eaabdb4f3ed148d43fe4bd3d64e 234 PANTHER PTHR30598 4 220 6.1E-47 T 23-04-2016 RD1_RS11470 172ddaa143c0a518e5f7c8bbd63e394f 184 Gene3D G3DSA:1.10.357.10 3 63 1.5E-23 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RD1_RS11470 172ddaa143c0a518e5f7c8bbd63e394f 184 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 56 - T 23-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RD1_RS11470 172ddaa143c0a518e5f7c8bbd63e394f 184 PANTHER PTHR30328:SF18 6 173 7.5E-28 T 23-04-2016 RD1_RS11470 172ddaa143c0a518e5f7c8bbd63e394f 184 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 1.1E-10 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS11470 172ddaa143c0a518e5f7c8bbd63e394f 184 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 1.1E-10 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS11470 172ddaa143c0a518e5f7c8bbd63e394f 184 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 7.7E-18 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS11470 172ddaa143c0a518e5f7c8bbd63e394f 184 Gene3D G3DSA:1.10.357.10 64 175 2.5E-24 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RD1_RS11470 172ddaa143c0a518e5f7c8bbd63e394f 184 SUPERFAMILY SSF46689 3 71 8.48E-20 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS11470 172ddaa143c0a518e5f7c8bbd63e394f 184 PANTHER PTHR30328 6 173 7.5E-28 T 23-04-2016 RD1_RS11470 172ddaa143c0a518e5f7c8bbd63e394f 184 SUPERFAMILY SSF48498 78 173 3.71E-14 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RD1_RS11305 36a72545218e358283532d787867b982 149 SUPERFAMILY SSF58113 12 69 1.83E-7 T 23-04-2016 RD1_RS11305 36a72545218e358283532d787867b982 149 Pfam PF09537 Domain of unknown function (DUF2383) 14 121 5.4E-24 T 23-04-2016 IPR019052 Domain of unknown function DUF2383 RD1_RS11305 36a72545218e358283532d787867b982 149 Gene3D G3DSA:1.20.120.20 11 67 6.8E-7 T 23-04-2016 RD1_RS11240 02566a7587b6a41f890db05109c0cd52 276 Gene3D G3DSA:3.10.50.40 108 236 1.1E-27 T 23-04-2016 RD1_RS11240 02566a7587b6a41f890db05109c0cd52 276 PANTHER PTHR10657:SF11 91 256 2.0E-25 T 23-04-2016 RD1_RS11240 02566a7587b6a41f890db05109c0cd52 276 Pfam PF00639 PPIC-type PPIASE domain 119 213 6.7E-22 T 23-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 RD1_RS11240 02566a7587b6a41f890db05109c0cd52 276 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 153 173 - T 23-04-2016 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site RD1_RS11240 02566a7587b6a41f890db05109c0cd52 276 SUPERFAMILY SSF109998 9 137 3.81E-5 T 23-04-2016 IPR027304 Trigger factor/SurA domain RD1_RS11240 02566a7587b6a41f890db05109c0cd52 276 SUPERFAMILY SSF54534 109 213 1.37E-22 T 23-04-2016 RD1_RS11240 02566a7587b6a41f890db05109c0cd52 276 PANTHER PTHR10657 91 256 2.0E-25 T 23-04-2016 RD1_RS05435 b6515be54c8efcd8c3162ca9527f0780 134 SUPERFAMILY SSF54593 1 133 1.75E-36 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS05435 b6515be54c8efcd8c3162ca9527f0780 134 TIGRFAM TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase 4 133 6.8E-50 T 23-04-2016 IPR017515 Methylmalonyl-CoA epimerase KEGG: 00280+5.1.99.1|KEGG: 00630+5.1.99.1|KEGG: 00640+5.1.99.1|KEGG: 00720+5.1.99.1|MetaCyc: PWY-5741|MetaCyc: PWY-5743|MetaCyc: PWY-5789|MetaCyc: PWY-6728|MetaCyc: PWY-7384 RD1_RS05435 b6515be54c8efcd8c3162ca9527f0780 134 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 118 1.7E-20 T 23-04-2016 RD1_RS05435 b6515be54c8efcd8c3162ca9527f0780 134 PANTHER PTHR21366:SF9 1 133 5.8E-69 T 23-04-2016 RD1_RS05435 b6515be54c8efcd8c3162ca9527f0780 134 PANTHER PTHR21366 1 133 5.8E-69 T 23-04-2016 RD1_RS05435 b6515be54c8efcd8c3162ca9527f0780 134 Gene3D G3DSA:3.10.180.10 1 133 1.2E-44 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS06310 a8856262be1a8c56a7eb1a86cacc181e 228 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 10 224 8.1E-70 T 23-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 RD1_RS06310 a8856262be1a8c56a7eb1a86cacc181e 228 SUPERFAMILY SSF69065 4 160 8.37E-42 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RD1_RS06310 a8856262be1a8c56a7eb1a86cacc181e 228 Pfam PF14622 Ribonuclease-III-like 22 142 1.3E-29 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RD1_RS06310 a8856262be1a8c56a7eb1a86cacc181e 228 SUPERFAMILY SSF54768 115 224 9.11E-26 T 23-04-2016 RD1_RS06310 a8856262be1a8c56a7eb1a86cacc181e 228 ProSitePatterns PS00517 Ribonuclease III family signature. 42 50 - T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RD1_RS06310 a8856262be1a8c56a7eb1a86cacc181e 228 Gene3D G3DSA:1.10.1520.10 6 152 1.8E-38 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RD1_RS06310 a8856262be1a8c56a7eb1a86cacc181e 228 SMART SM00358 158 225 1.4E-25 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain RD1_RS06310 a8856262be1a8c56a7eb1a86cacc181e 228 Hamap MF_00104 Ribonuclease 3 [rnc]. 10 221 26.548 T 23-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 RD1_RS06310 a8856262be1a8c56a7eb1a86cacc181e 228 Pfam PF00035 Double-stranded RNA binding motif 158 224 3.4E-15 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain RD1_RS06310 a8856262be1a8c56a7eb1a86cacc181e 228 Gene3D G3DSA:3.30.160.20 157 224 3.2E-24 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain RD1_RS06310 a8856262be1a8c56a7eb1a86cacc181e 228 PANTHER PTHR11207 4 228 3.9E-71 T 23-04-2016 RD1_RS06310 a8856262be1a8c56a7eb1a86cacc181e 228 SMART SM00535 22 153 1.3E-43 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 6.4E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 6.4E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 6.4E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 PANTHER PTHR24322:SF459 156 188 2.8E-61 T 23-04-2016 RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 PANTHER PTHR24322:SF459 15 140 2.8E-61 T 23-04-2016 RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 Gene3D G3DSA:3.40.50.720 5 250 1.8E-81 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.0E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 2.0E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.0E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 2.0E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.0E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.0E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 PANTHER PTHR24322 156 188 2.8E-61 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 PANTHER PTHR24322 15 140 2.8E-61 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 249 2.1E-58 T 23-04-2016 RD1_RS05090 2da4f1329fcab2edc9f238fd30fde18d 252 SUPERFAMILY SSF51735 6 250 8.15E-78 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS06710 26b137fb8fcbd70a718f26aeb549b89c 165 PANTHER PTHR20935 1 62 3.8E-13 T 23-04-2016 RD1_RS06710 26b137fb8fcbd70a718f26aeb549b89c 165 Gene3D G3DSA:3.40.50.1240 1 163 1.4E-48 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RD1_RS06710 26b137fb8fcbd70a718f26aeb549b89c 165 SMART SM00855 3 112 3.6E-7 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RD1_RS06710 26b137fb8fcbd70a718f26aeb549b89c 165 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 64 9.0E-10 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RD1_RS06710 26b137fb8fcbd70a718f26aeb549b89c 165 SUPERFAMILY SSF53254 1 163 4.86E-30 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RD1_RS04720 3da82829166fc86c652640b95b638c07 635 Gene3D G3DSA:3.40.50.410 218 352 2.3E-5 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS04720 3da82829166fc86c652640b95b638c07 635 SUPERFAMILY SSF53300 217 416 5.72E-14 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS05340 77fac157004b454ee109a3dd855ce60d 412 PANTHER PTHR21152:SF21 17 389 1.1E-30 T 23-04-2016 RD1_RS05340 77fac157004b454ee109a3dd855ce60d 412 SUPERFAMILY SSF53383 15 389 4.03E-60 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS05340 77fac157004b454ee109a3dd855ce60d 412 Pfam PF00266 Aminotransferase class-V 122 200 3.8E-7 T 23-04-2016 IPR000192 Aminotransferase class V domain RD1_RS05340 77fac157004b454ee109a3dd855ce60d 412 Gene3D G3DSA:3.40.640.10 36 276 1.3E-32 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS05340 77fac157004b454ee109a3dd855ce60d 412 PIRSF PIRSF000524 6 411 1.3E-40 T 23-04-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RD1_RS05340 77fac157004b454ee109a3dd855ce60d 412 PANTHER PTHR21152 17 389 1.1E-30 T 23-04-2016 RD1_RS05340 77fac157004b454ee109a3dd855ce60d 412 Gene3D G3DSA:3.90.1150.10 277 390 1.2E-7 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS02460 6a32997acf0d6d8c44ebea44c5dc5ba3 148 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 7 145 5.4E-41 T 23-04-2016 IPR010419 Carbon monoxide dehydrogenase subunit G RD1_RS02460 6a32997acf0d6d8c44ebea44c5dc5ba3 148 PANTHER PTHR38588 2 148 3.1E-37 T 23-04-2016 RD1_RS02460 6a32997acf0d6d8c44ebea44c5dc5ba3 148 PANTHER PTHR38588:SF1 2 148 3.1E-37 T 23-04-2016 RD1_RS02460 6a32997acf0d6d8c44ebea44c5dc5ba3 148 SUPERFAMILY SSF55961 1 145 3.93E-43 T 23-04-2016 RD1_RS02460 6a32997acf0d6d8c44ebea44c5dc5ba3 148 Gene3D G3DSA:3.30.530.20 1 147 7.2E-56 T 23-04-2016 IPR023393 START-like domain RD1_RS02885 c0f2942f0b920bca5c44520e71306993 273 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 62 67 - T 23-04-2016 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 RD1_RS02885 c0f2942f0b920bca5c44520e71306993 273 Gene3D G3DSA:2.40.10.10 135 223 2.1E-6 T 23-04-2016 RD1_RS02885 c0f2942f0b920bca5c44520e71306993 273 SUPERFAMILY SSF50494 6 226 2.16E-29 T 23-04-2016 IPR009003 Peptidase S1, PA clan RD1_RS02885 c0f2942f0b920bca5c44520e71306993 273 SMART SM00020 38 234 0.0014 T 23-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RD1_RS02885 c0f2942f0b920bca5c44520e71306993 273 Gene3D G3DSA:2.40.10.10 37 134 1.2E-18 T 23-04-2016 RD1_RS02885 c0f2942f0b920bca5c44520e71306993 273 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 118 132 9.8E-5 T 23-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RD1_RS02885 c0f2942f0b920bca5c44520e71306993 273 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 52 67 9.8E-5 T 23-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RD1_RS02885 c0f2942f0b920bca5c44520e71306993 273 Pfam PF00089 Trypsin 34 171 2.0E-14 T 23-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RD1_RS04380 96924d0326720f5041c0b8bf66afeeb7 235 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 235 54.17 T 23-04-2016 IPR005224 Sugar fermentation stimulation protein RD1_RS04380 96924d0326720f5041c0b8bf66afeeb7 235 PANTHER PTHR30545:SF2 7 235 1.3E-73 T 23-04-2016 RD1_RS04380 96924d0326720f5041c0b8bf66afeeb7 235 PANTHER PTHR30545 7 235 1.3E-73 T 23-04-2016 RD1_RS04380 96924d0326720f5041c0b8bf66afeeb7 235 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 6 230 2.2E-65 T 23-04-2016 IPR005224 Sugar fermentation stimulation protein RD1_RS04380 96924d0326720f5041c0b8bf66afeeb7 235 Pfam PF03749 Sugar fermentation stimulation protein 14 226 4.8E-72 T 23-04-2016 IPR005224 Sugar fermentation stimulation protein RD1_RS08120 cb918d8e509f3026ad9d2b9b1457f56b 289 PANTHER PTHR21091:SF31 136 265 1.7E-33 T 23-04-2016 RD1_RS08120 cb918d8e509f3026ad9d2b9b1457f56b 289 Pfam PF02219 Methylenetetrahydrofolate reductase 5 277 3.0E-81 T 23-04-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 RD1_RS08120 cb918d8e509f3026ad9d2b9b1457f56b 289 SUPERFAMILY SSF51730 4 278 3.14E-91 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like RD1_RS08120 cb918d8e509f3026ad9d2b9b1457f56b 289 Gene3D G3DSA:3.20.20.220 4 280 3.8E-94 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like RD1_RS08120 cb918d8e509f3026ad9d2b9b1457f56b 289 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 6 276 5.6E-94 T 23-04-2016 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 RD1_RS08120 cb918d8e509f3026ad9d2b9b1457f56b 289 PANTHER PTHR21091 136 265 1.7E-33 T 23-04-2016 RD1_RS01550 43aa0c0227af3b1e13843824966345a5 587 SUPERFAMILY SSF143975 6 392 1.07E-126 T 23-04-2016 RD1_RS01550 43aa0c0227af3b1e13843824966345a5 587 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 24 573 1.9E-198 T 23-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS01550 43aa0c0227af3b1e13843824966345a5 587 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 11 574 44.167 T 23-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS01550 43aa0c0227af3b1e13843824966345a5 587 PANTHER PTHR21000:SF5 13 574 1.1E-279 T 23-04-2016 RD1_RS01550 43aa0c0227af3b1e13843824966345a5 587 PANTHER PTHR21000 13 574 1.1E-279 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS01550 43aa0c0227af3b1e13843824966345a5 587 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 481 492 - T 23-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS01550 43aa0c0227af3b1e13843824966345a5 587 Pfam PF00920 Dehydratase family 41 571 1.1E-199 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS01550 43aa0c0227af3b1e13843824966345a5 587 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 129 139 - T 23-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS01550 43aa0c0227af3b1e13843824966345a5 587 SUPERFAMILY SSF52016 393 574 5.73E-57 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RD1_RS03175 b8d6a64fdbd8a3b8c9bff9132d2be8fb 217 SUPERFAMILY SSF51182 95 213 1.05E-21 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS03175 b8d6a64fdbd8a3b8c9bff9132d2be8fb 217 TIGRFAM TIGR02451 anti_sig_ChrR: anti-sigma factor, putative, ChrR family 7 216 9.6E-62 T 23-04-2016 IPR012807 Anti-sigma factor ChrR, putative RD1_RS03175 b8d6a64fdbd8a3b8c9bff9132d2be8fb 217 Pfam PF12973 ChrR Cupin-like domain 111 194 1.5E-13 T 23-04-2016 IPR025979 ChrR-like cupin domain RD1_RS03175 b8d6a64fdbd8a3b8c9bff9132d2be8fb 217 Gene3D G3DSA:2.60.120.10 108 203 1.8E-15 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS10215 a8edc74f39941c1c54f8877d4627b899 353 PANTHER PTHR32196 8 350 7.0E-72 T 23-04-2016 RD1_RS10215 a8edc74f39941c1c54f8877d4627b899 353 PANTHER PTHR32196:SF21 8 350 7.0E-72 T 23-04-2016 RD1_RS10215 a8edc74f39941c1c54f8877d4627b899 353 Pfam PF02653 Branched-chain amino acid transport system / permease component 71 342 2.6E-47 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS07680 02a34486318b48b19ab773422d92f55d 277 Pfam PF00793 DAHP synthetase I family 8 267 1.0E-67 T 23-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RD1_RS07680 02a34486318b48b19ab773422d92f55d 277 PANTHER PTHR21057 1 271 9.6E-149 T 23-04-2016 RD1_RS07680 02a34486318b48b19ab773422d92f55d 277 SUPERFAMILY SSF51569 2 272 6.96E-105 T 23-04-2016 RD1_RS07680 02a34486318b48b19ab773422d92f55d 277 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 11 273 49.977 T 23-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RD1_RS07680 02a34486318b48b19ab773422d92f55d 277 Gene3D G3DSA:3.20.20.70 15 271 8.9E-107 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS07680 02a34486318b48b19ab773422d92f55d 277 PANTHER PTHR21057:SF2 1 271 9.6E-149 T 23-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RD1_RS07680 02a34486318b48b19ab773422d92f55d 277 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 16 271 1.3E-116 T 23-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RD1_RS02875 c0284f98e6527545933f2154b6be13b3 381 SUPERFAMILY SSF56176 2 173 7.01E-29 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RD1_RS02875 c0284f98e6527545933f2154b6be13b3 381 Pfam PF01565 FAD binding domain 2 134 2.3E-13 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RD1_RS02875 c0284f98e6527545933f2154b6be13b3 381 Gene3D G3DSA:3.30.465.10 50 173 3.1E-21 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RD1_RS02875 c0284f98e6527545933f2154b6be13b3 381 SUPERFAMILY SSF55103 188 373 8.07E-20 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RD1_RS02875 c0284f98e6527545933f2154b6be13b3 381 PANTHER PTHR11748:SF1 38 373 1.9E-65 T 23-04-2016 RD1_RS02875 c0284f98e6527545933f2154b6be13b3 381 PANTHER PTHR11748 38 373 1.9E-65 T 23-04-2016 RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 SUPERFAMILY SSF54292 2 83 1.7E-20 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 345 444 3.0E-31 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 176 338 6.7E-46 T 23-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 56 6.6E-7 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 Gene3D G3DSA:3.30.390.50 344 444 1.0E-35 T 23-04-2016 RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 SMART SM01092 344 445 8.3E-33 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 Gene3D G3DSA:3.30.465.10 226 338 2.8E-37 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 Gene3D G3DSA:3.10.20.30 2 79 9.7E-29 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 SUPERFAMILY SSF56176 173 338 1.25E-50 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 SUPERFAMILY SSF47741 90 154 1.2E-27 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 SUPERFAMILY SSF55447 342 446 7.06E-31 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 PIRSF PIRSF036557 1 457 9.6E-190 T 23-04-2016 IPR012175 Xanthine dehydrogenase, small subunit, bacteria RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 3 444 6.1E-174 T 23-04-2016 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 PANTHER PTHR11908 1 444 6.7E-114 T 23-04-2016 RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 Gene3D G3DSA:1.10.150.120 80 155 3.8E-29 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 Gene3D G3DSA:3.30.43.10 177 225 2.4E-23 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RD1_RS18610 959fe734ad1d8d3017ef8b5213f09fd8 457 Pfam PF01799 [2Fe-2S] binding domain 78 147 1.6E-25 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RD1_RS12860 a758506b9646057f5d32f8f2b7586b1f 407 Gene3D G3DSA:3.30.750.80 89 192 8.3E-29 T 23-04-2016 RD1_RS12860 a758506b9646057f5d32f8f2b7586b1f 407 SUPERFAMILY SSF53335 96 404 1.12E-64 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS12860 a758506b9646057f5d32f8f2b7586b1f 407 Gene3D G3DSA:2.30.130.10 17 87 1.9E-6 T 23-04-2016 IPR015947 PUA-like domain RD1_RS12860 a758506b9646057f5d32f8f2b7586b1f 407 PANTHER PTHR11061:SF12 27 406 8.3E-66 T 23-04-2016 RD1_RS12860 a758506b9646057f5d32f8f2b7586b1f 407 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 144 353 2.7E-18 T 23-04-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 RD1_RS12860 a758506b9646057f5d32f8f2b7586b1f 407 SUPERFAMILY SSF88697 16 86 2.49E-7 T 23-04-2016 IPR015947 PUA-like domain RD1_RS12860 a758506b9646057f5d32f8f2b7586b1f 407 PANTHER PTHR11061 27 406 8.3E-66 T 23-04-2016 RD1_RS12860 a758506b9646057f5d32f8f2b7586b1f 407 Gene3D G3DSA:3.40.50.150 196 406 1.2E-51 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS06725 c8b4159602782eabe783cfe96b91fad1 282 SUPERFAMILY SSF53633 3 281 1.2E-89 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RD1_RS06725 c8b4159602782eabe783cfe96b91fad1 282 Gene3D G3DSA:3.40.1160.10 24 280 1.0E-99 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RD1_RS06725 c8b4159602782eabe783cfe96b91fad1 282 TIGRFAM TIGR00761 argB: acetylglutamate kinase 26 256 2.4E-80 T 23-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS06725 c8b4159602782eabe783cfe96b91fad1 282 Hamap MF_00082_B Acetylglutamate kinase [argB]. 23 281 35.024 T 23-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS06725 c8b4159602782eabe783cfe96b91fad1 282 PRINTS PR00474 Glutamate 5-kinase family signature 56 70 4.88E-9 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RD1_RS06725 c8b4159602782eabe783cfe96b91fad1 282 PRINTS PR00474 Glutamate 5-kinase family signature 181 208 4.88E-9 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RD1_RS06725 c8b4159602782eabe783cfe96b91fad1 282 PRINTS PR00474 Glutamate 5-kinase family signature 231 251 4.88E-9 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RD1_RS06725 c8b4159602782eabe783cfe96b91fad1 282 PIRSF PIRSF000728 10 281 1.0E-106 T 23-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS06725 c8b4159602782eabe783cfe96b91fad1 282 Pfam PF00696 Amino acid kinase family 26 257 2.0E-47 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RD1_RS06725 c8b4159602782eabe783cfe96b91fad1 282 PANTHER PTHR23342 3 280 8.1E-107 T 23-04-2016 RD1_RS08985 5fcdd0c7c881ecfd0b1948dcbb769af4 590 Gene3D G3DSA:2.40.10.10 454 527 5.9E-6 T 23-04-2016 RD1_RS08985 5fcdd0c7c881ecfd0b1948dcbb769af4 590 SUPERFAMILY SSF47090 164 223 2.88E-13 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS08985 5fcdd0c7c881ecfd0b1948dcbb769af4 590 Pfam PF01471 Putative peptidoglycan binding domain 171 222 1.2E-9 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS08985 5fcdd0c7c881ecfd0b1948dcbb769af4 590 Gene3D G3DSA:1.10.101.10 171 227 1.3E-11 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS08985 5fcdd0c7c881ecfd0b1948dcbb769af4 590 SUPERFAMILY SSF50494 389 535 8.3E-18 T 23-04-2016 IPR009003 Peptidase S1, PA clan RD1_RS08985 5fcdd0c7c881ecfd0b1948dcbb769af4 590 Gene3D G3DSA:2.40.10.10 391 450 7.4E-6 T 23-04-2016 RD1_RS08985 5fcdd0c7c881ecfd0b1948dcbb769af4 590 Pfam PF13365 Trypsin-like peptidase domain 397 526 1.2E-11 T 23-04-2016 RD1_RS10425 75a86479aff287355d65b87d1b562a36 232 Gene3D G3DSA:3.40.50.280 89 230 7.3E-53 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS10425 75a86479aff287355d65b87d1b562a36 232 Pfam PF02607 B12 binding domain 19 91 4.5E-15 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RD1_RS10425 75a86479aff287355d65b87d1b562a36 232 Gene3D G3DSA:1.10.1240.10 11 88 2.0E-21 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RD1_RS10425 75a86479aff287355d65b87d1b562a36 232 SMART SM01018 15 98 2.4E-26 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RD1_RS10425 75a86479aff287355d65b87d1b562a36 232 SUPERFAMILY SSF47644 12 96 2.62E-21 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RD1_RS10425 75a86479aff287355d65b87d1b562a36 232 Pfam PF02310 B12 binding domain 104 209 3.8E-23 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS10425 75a86479aff287355d65b87d1b562a36 232 SUPERFAMILY SSF52242 83 227 1.23E-44 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS14820 a2ec3dfbfc7dbd3e0c3f3a2742c15e2f 269 Pfam PF01177 Asp/Glu/Hydantoin racemase 3 225 3.1E-23 T 23-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS14820 a2ec3dfbfc7dbd3e0c3f3a2742c15e2f 269 Gene3D G3DSA:3.40.50.1860 2 178 1.4E-41 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS14820 a2ec3dfbfc7dbd3e0c3f3a2742c15e2f 269 SUPERFAMILY SSF53681 1 105 7.19E-29 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS14820 a2ec3dfbfc7dbd3e0c3f3a2742c15e2f 269 SUPERFAMILY SSF53681 120 265 7.19E-29 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS14820 a2ec3dfbfc7dbd3e0c3f3a2742c15e2f 269 Hamap MF_00258 Glutamate racemase [murI]. 1 263 27.487 T 23-04-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS14820 a2ec3dfbfc7dbd3e0c3f3a2742c15e2f 269 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 67 75 - T 23-04-2016 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS14820 a2ec3dfbfc7dbd3e0c3f3a2742c15e2f 269 PANTHER PTHR21198:SF2 3 265 2.4E-55 T 23-04-2016 RD1_RS14820 a2ec3dfbfc7dbd3e0c3f3a2742c15e2f 269 PANTHER PTHR21198 3 265 2.4E-55 T 23-04-2016 RD1_RS15250 a984332db1a23182304123679f1f1e15 524 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 441 523 2.3E-31 T 23-04-2016 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2 RD1_RS15250 a984332db1a23182304123679f1f1e15 524 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 139 3.0E-49 T 23-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RD1_RS15250 a984332db1a23182304123679f1f1e15 524 Gene3D G3DSA:3.40.50.1770 2 176 2.6E-64 T 23-04-2016 RD1_RS15250 a984332db1a23182304123679f1f1e15 524 SMART SM01003 4 139 1.3E-72 T 23-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RD1_RS15250 a984332db1a23182304123679f1f1e15 524 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 2 523 4.1E-204 T 23-04-2016 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0015992|GO:0055114 KEGG: 00760+1.6.1.2 RD1_RS15250 a984332db1a23182304123679f1f1e15 524 PIRSF PIRSF000203 1 523 2.6E-226 T 23-04-2016 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0015992|GO:0055114 KEGG: 00760+1.6.1.2 RD1_RS15250 a984332db1a23182304123679f1f1e15 524 PANTHER PTHR10160 1 523 1.4E-248 T 23-04-2016 RD1_RS15250 a984332db1a23182304123679f1f1e15 524 SUPERFAMILY SSF51735 139 322 1.29E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15250 a984332db1a23182304123679f1f1e15 524 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 143 373 1.1E-68 T 23-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RD1_RS15250 a984332db1a23182304123679f1f1e15 524 PANTHER PTHR10160:SF19 1 523 1.4E-248 T 23-04-2016 RD1_RS15250 a984332db1a23182304123679f1f1e15 524 Gene3D G3DSA:3.40.50.720 177 197 7.3E-6 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15250 a984332db1a23182304123679f1f1e15 524 Gene3D G3DSA:3.40.50.1770 198 375 1.0E-41 T 23-04-2016 RD1_RS15250 a984332db1a23182304123679f1f1e15 524 SMART SM01002 148 316 3.1E-75 T 23-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RD1_RS15250 a984332db1a23182304123679f1f1e15 524 SUPERFAMILY SSF52283 2 170 1.96E-55 T 23-04-2016 RD1_RS04085 a903cb756448c655414105ba00839643 133 Gene3D G3DSA:1.10.760.10 25 128 1.4E-36 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS04085 a903cb756448c655414105ba00839643 133 Pfam PF00034 Cytochrome c 28 127 1.1E-6 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS04085 a903cb756448c655414105ba00839643 133 PRINTS PR00604 Class IA and IB cytochrome C signature 37 44 2.3E-12 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS04085 a903cb756448c655414105ba00839643 133 PRINTS PR00604 Class IA and IB cytochrome C signature 119 127 2.3E-12 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS04085 a903cb756448c655414105ba00839643 133 PRINTS PR00604 Class IA and IB cytochrome C signature 50 65 2.3E-12 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS04085 a903cb756448c655414105ba00839643 133 PRINTS PR00604 Class IA and IB cytochrome C signature 83 99 2.3E-12 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS04085 a903cb756448c655414105ba00839643 133 PRINTS PR00604 Class IA and IB cytochrome C signature 102 112 2.3E-12 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS04085 a903cb756448c655414105ba00839643 133 SUPERFAMILY SSF46626 25 129 2.76E-32 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS04085 a903cb756448c655414105ba00839643 133 PANTHER PTHR11961 25 125 3.6E-25 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS04085 a903cb756448c655414105ba00839643 133 PANTHER PTHR11961:SF6 25 125 3.6E-25 T 23-04-2016 RD1_RS01815 142706d40a913a0bbc39634cfc139298 196 PANTHER PTHR33867:SF1 7 139 3.1E-40 T 23-04-2016 RD1_RS01815 142706d40a913a0bbc39634cfc139298 196 Gene3D G3DSA:3.30.300.70 9 87 5.1E-30 T 23-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal RD1_RS01815 142706d40a913a0bbc39634cfc139298 196 PANTHER PTHR33867 7 139 3.1E-40 T 23-04-2016 RD1_RS01815 142706d40a913a0bbc39634cfc139298 196 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 13 158 23.725 T 23-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 RD1_RS01815 142706d40a913a0bbc39634cfc139298 196 Pfam PF02576 Putative ribosome maturation factor RimP 18 154 3.0E-42 T 23-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 RD1_RS01815 142706d40a913a0bbc39634cfc139298 196 Gene3D G3DSA:2.30.30.180 95 155 8.1E-12 T 23-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal RD1_RS01815 142706d40a913a0bbc39634cfc139298 196 SUPERFAMILY SSF75420 9 90 3.27E-23 T 23-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal RD1_RS01815 142706d40a913a0bbc39634cfc139298 196 SUPERFAMILY SSF74942 91 159 7.06E-16 T 23-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal RD1_RS14975 1c40000a911ee2114aa819d2131ef143 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 255 1.8E-38 T 23-04-2016 RD1_RS14975 1c40000a911ee2114aa819d2131ef143 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.5E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14975 1c40000a911ee2114aa819d2131ef143 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.5E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14975 1c40000a911ee2114aa819d2131ef143 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.5E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14975 1c40000a911ee2114aa819d2131ef143 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.5E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14975 1c40000a911ee2114aa819d2131ef143 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.5E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14975 1c40000a911ee2114aa819d2131ef143 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 2.5E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14975 1c40000a911ee2114aa819d2131ef143 259 PANTHER PTHR24319 1 259 2.7E-57 T 23-04-2016 RD1_RS14975 1c40000a911ee2114aa819d2131ef143 259 Gene3D G3DSA:3.40.50.720 4 255 1.7E-57 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS14975 1c40000a911ee2114aa819d2131ef143 259 SUPERFAMILY SSF51735 6 255 1.06E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS14975 1c40000a911ee2114aa819d2131ef143 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.2E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14975 1c40000a911ee2114aa819d2131ef143 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 2.2E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14975 1c40000a911ee2114aa819d2131ef143 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 2.2E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14975 1c40000a911ee2114aa819d2131ef143 259 PANTHER PTHR24319:SF23 1 259 2.7E-57 T 23-04-2016 RD1_RS02430 234140bd58b4b566ddcc2f1ab9b02712 327 PANTHER PTHR22550:SF12 1 327 3.3E-90 T 23-04-2016 RD1_RS02430 234140bd58b4b566ddcc2f1ab9b02712 327 Pfam PF00092 von Willebrand factor type A domain 95 277 1.8E-24 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS02430 234140bd58b4b566ddcc2f1ab9b02712 327 SUPERFAMILY SSF53300 92 280 1.48E-35 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS02430 234140bd58b4b566ddcc2f1ab9b02712 327 SMART SM00327 93 284 9.8E-22 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS02430 234140bd58b4b566ddcc2f1ab9b02712 327 Gene3D G3DSA:3.40.50.410 91 280 1.6E-25 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS02430 234140bd58b4b566ddcc2f1ab9b02712 327 PANTHER PTHR22550 1 327 3.3E-90 T 23-04-2016 RD1_RS18645 eec43a5cd7bfff8283ea4c08d30a32a4 136 PANTHER PTHR31964 1 136 7.5E-19 T 23-04-2016 RD1_RS18645 eec43a5cd7bfff8283ea4c08d30a32a4 136 PANTHER PTHR31964:SF26 1 136 7.5E-19 T 23-04-2016 RD1_RS18645 eec43a5cd7bfff8283ea4c08d30a32a4 136 SUPERFAMILY SSF52402 1 136 5.78E-25 T 23-04-2016 RD1_RS18645 eec43a5cd7bfff8283ea4c08d30a32a4 136 Gene3D G3DSA:3.40.50.620 3 136 7.0E-28 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS18645 eec43a5cd7bfff8283ea4c08d30a32a4 136 PRINTS PR01438 Universal stress protein signature 97 109 1.4E-7 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS18645 eec43a5cd7bfff8283ea4c08d30a32a4 136 PRINTS PR01438 Universal stress protein signature 114 136 1.4E-7 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS18645 eec43a5cd7bfff8283ea4c08d30a32a4 136 PRINTS PR01438 Universal stress protein signature 2 20 1.4E-7 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS18645 eec43a5cd7bfff8283ea4c08d30a32a4 136 Pfam PF00582 Universal stress protein family 1 136 4.0E-23 T 23-04-2016 IPR006016 UspA GO:0006950 RD1_RS13650 3ee52f0c33fd6c70e19c23f98711afb7 253 SUPERFAMILY SSF52402 24 205 1.8E-45 T 23-04-2016 RD1_RS13650 3ee52f0c33fd6c70e19c23f98711afb7 253 Gene3D G3DSA:3.40.50.620 18 213 1.0E-46 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS13650 3ee52f0c33fd6c70e19c23f98711afb7 253 PANTHER PTHR23293 20 240 3.0E-65 T 23-04-2016 RD1_RS13650 3ee52f0c33fd6c70e19c23f98711afb7 253 PIRSF PIRSF000857 4 246 1.4E-76 T 23-04-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 RD1_RS13650 3ee52f0c33fd6c70e19c23f98711afb7 253 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 42 240 1.6E-50 T 23-04-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 RD1_RS13650 3ee52f0c33fd6c70e19c23f98711afb7 253 PANTHER PTHR23293:SF5 20 240 3.0E-65 T 23-04-2016 RD1_RS13650 3ee52f0c33fd6c70e19c23f98711afb7 253 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 50 217 1.4E-39 T 23-04-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 5.8E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 5.8E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 5.8E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 5.8E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 5.8E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 8 247 8.7E-32 T 23-04-2016 RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 PANTHER PTHR24322:SF211 41 119 1.2E-36 T 23-04-2016 RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 PANTHER PTHR24322:SF211 161 192 1.2E-36 T 23-04-2016 RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 PANTHER PTHR24322:SF211 139 145 1.2E-36 T 23-04-2016 RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 PANTHER PTHR24322:SF211 6 25 1.2E-36 T 23-04-2016 RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 PANTHER PTHR24322 41 119 1.2E-36 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 PANTHER PTHR24322 161 192 1.2E-36 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 PANTHER PTHR24322 139 145 1.2E-36 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 PANTHER PTHR24322 6 25 1.2E-36 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 SUPERFAMILY SSF51735 3 249 2.58E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS18705 544877a2dc8755c248534a8000d8d2ea 259 Gene3D G3DSA:3.40.50.720 2 248 1.0E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS10315 f0da8a98206723aa84b4798d08782cc3 782 Pfam PF00271 Helicase conserved C-terminal domain 419 529 6.5E-6 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS10315 f0da8a98206723aa84b4798d08782cc3 782 Gene3D G3DSA:3.40.50.300 161 348 6.0E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10315 f0da8a98206723aa84b4798d08782cc3 782 PANTHER PTHR30195 63 550 3.0E-64 T 23-04-2016 RD1_RS10315 f0da8a98206723aa84b4798d08782cc3 782 Pfam PF08463 EcoEI R protein C-terminal 624 780 2.1E-16 T 23-04-2016 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 RD1_RS10315 f0da8a98206723aa84b4798d08782cc3 782 SMART SM00487 160 372 4.1E-18 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD1_RS10315 f0da8a98206723aa84b4798d08782cc3 782 Gene3D G3DSA:3.40.50.300 419 540 6.6E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10315 f0da8a98206723aa84b4798d08782cc3 782 PANTHER PTHR30195:SF3 63 550 3.0E-64 T 23-04-2016 RD1_RS10315 f0da8a98206723aa84b4798d08782cc3 782 Pfam PF04851 Type III restriction enzyme, res subunit 163 338 4.5E-40 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RD1_RS10315 f0da8a98206723aa84b4798d08782cc3 782 SUPERFAMILY SSF52540 175 339 5.06E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10315 f0da8a98206723aa84b4798d08782cc3 782 SUPERFAMILY SSF52540 397 534 5.06E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05100 6611b8c3d229f7d9d84cabe90f5316c5 465 SUPERFAMILY SSF53098 266 443 5.43E-52 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS05100 6611b8c3d229f7d9d84cabe90f5316c5 465 SMART SM00479 272 441 1.3E-45 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RD1_RS05100 6611b8c3d229f7d9d84cabe90f5316c5 465 PANTHER PTHR30231 235 436 4.8E-47 T 23-04-2016 RD1_RS05100 6611b8c3d229f7d9d84cabe90f5316c5 465 Pfam PF00929 Exonuclease 274 431 4.6E-34 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RD1_RS05100 6611b8c3d229f7d9d84cabe90f5316c5 465 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 268 433 2.7E-29 T 23-04-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS05100 6611b8c3d229f7d9d84cabe90f5316c5 465 Gene3D G3DSA:3.30.420.10 266 444 6.9E-54 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS05905 23fb41a7d848260a20f996b48573f7d9 113 Gene3D G3DSA:3.30.1390.10 12 112 1.9E-45 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RD1_RS05905 23fb41a7d848260a20f996b48573f7d9 113 SUPERFAMILY SSF54736 27 111 1.78E-33 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RD1_RS05905 23fb41a7d848260a20f996b48573f7d9 113 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 29 108 5.2E-35 T 23-04-2016 IPR003769 Adaptor protein ClpS, core GO:0030163 RD1_RS05905 23fb41a7d848260a20f996b48573f7d9 113 PANTHER PTHR33473 1 113 2.2E-39 T 23-04-2016 RD1_RS05905 23fb41a7d848260a20f996b48573f7d9 113 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 8 107 28.159 T 23-04-2016 IPR022935 ATP-dependent Clp protease adaptor protein ClpS RD1_RS15980 3702fa21e1da36272561159cbee54f95 391 PANTHER PTHR10804:SF109 147 389 2.0E-13 T 23-04-2016 RD1_RS15980 3702fa21e1da36272561159cbee54f95 391 Pfam PF01321 Creatinase/Prolidase N-terminal domain 14 158 2.2E-22 T 23-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 RD1_RS15980 3702fa21e1da36272561159cbee54f95 391 SUPERFAMILY SSF53092 4 156 6.8E-39 T 23-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal RD1_RS15980 3702fa21e1da36272561159cbee54f95 391 Gene3D G3DSA:3.40.350.10 3 156 1.4E-36 T 23-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RD1_RS15980 3702fa21e1da36272561159cbee54f95 391 Pfam PF00557 Metallopeptidase family M24 166 373 5.2E-28 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS15980 3702fa21e1da36272561159cbee54f95 391 PANTHER PTHR10804 147 389 2.0E-13 T 23-04-2016 RD1_RS15980 3702fa21e1da36272561159cbee54f95 391 TIGRFAM TIGR02993 ectoine_eutD: ectoine utilization protein EutD 2 390 2.9E-192 T 23-04-2016 IPR014335 Ectoine utilization protein EutD KEGG: 00230+3.5.2.-|KEGG: 00340+3.5.2.-|KEGG: 00930+3.5.2.- RD1_RS15980 3702fa21e1da36272561159cbee54f95 391 Gene3D G3DSA:3.90.230.10 158 387 5.6E-43 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS15980 3702fa21e1da36272561159cbee54f95 391 SUPERFAMILY SSF55920 158 389 4.84E-53 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS17835 4702b6b583cce3db2255d11c5e41c5a9 263 PANTHER PTHR10314:SF4 74 130 3.7E-26 T 23-04-2016 RD1_RS17835 4702b6b583cce3db2255d11c5e41c5a9 263 PANTHER PTHR10314:SF4 1 51 3.7E-26 T 23-04-2016 RD1_RS17835 4702b6b583cce3db2255d11c5e41c5a9 263 Pfam PF00290 Tryptophan synthase alpha chain 8 244 1.3E-95 T 23-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RD1_RS17835 4702b6b583cce3db2255d11c5e41c5a9 263 SUPERFAMILY SSF51366 1 243 1.22E-89 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RD1_RS17835 4702b6b583cce3db2255d11c5e41c5a9 263 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 243 1.9E-80 T 23-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RD1_RS17835 4702b6b583cce3db2255d11c5e41c5a9 263 PANTHER PTHR10314 74 130 3.7E-26 T 23-04-2016 RD1_RS17835 4702b6b583cce3db2255d11c5e41c5a9 263 PANTHER PTHR10314 1 51 3.7E-26 T 23-04-2016 RD1_RS17835 4702b6b583cce3db2255d11c5e41c5a9 263 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 23-04-2016 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RD1_RS17835 4702b6b583cce3db2255d11c5e41c5a9 263 Gene3D G3DSA:3.20.20.70 1 258 9.3E-100 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS17835 4702b6b583cce3db2255d11c5e41c5a9 263 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 13 259 37.33 T 23-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RD1_RS11420 7b2570510086553be839e189b0fb5aaa 422 Pfam PF00589 Phage integrase family 270 398 3.7E-6 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RD1_RS11420 7b2570510086553be839e189b0fb5aaa 422 SUPERFAMILY SSF56349 134 398 5.59E-23 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RD1_RS11420 7b2570510086553be839e189b0fb5aaa 422 Gene3D G3DSA:1.10.443.10 265 398 1.9E-12 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RD1_RS00415 436282a799664814d680fdcbb82c9d7b 279 Gene3D G3DSA:3.20.20.60 17 268 1.9E-109 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS00415 436282a799664814d680fdcbb82c9d7b 279 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 10 268 40.864 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RD1_RS00415 436282a799664814d680fdcbb82c9d7b 279 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 16 268 4.4E-92 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RD1_RS00415 436282a799664814d680fdcbb82c9d7b 279 SUPERFAMILY SSF51621 16 266 1.45E-99 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS00415 436282a799664814d680fdcbb82c9d7b 279 PIRSF PIRSF000388 2 270 1.8E-103 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RD1_RS00415 436282a799664814d680fdcbb82c9d7b 279 Pfam PF02548 Ketopantoate hydroxymethyltransferase 17 263 2.3E-106 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RD1_RS00415 436282a799664814d680fdcbb82c9d7b 279 PANTHER PTHR20881 15 269 5.6E-130 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RD1_RS19180 3b68fe6cce7874551a37056dc70fed68 261 PANTHER PTHR24220:SF558 4 246 2.7E-66 T 23-04-2016 RD1_RS19180 3b68fe6cce7874551a37056dc70fed68 261 SUPERFAMILY SSF52540 7 231 1.85E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS19180 3b68fe6cce7874551a37056dc70fed68 261 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS19180 3b68fe6cce7874551a37056dc70fed68 261 Gene3D G3DSA:3.40.50.300 6 241 1.6E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS19180 3b68fe6cce7874551a37056dc70fed68 261 PANTHER PTHR24220 4 246 2.7E-66 T 23-04-2016 RD1_RS19180 3b68fe6cce7874551a37056dc70fed68 261 SMART SM00382 27 215 6.9E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS19180 3b68fe6cce7874551a37056dc70fed68 261 Pfam PF00005 ABC transporter 18 167 1.4E-22 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS16705 d799065047f9e19b5272471a79f020ef 499 SUPERFAMILY SSF51905 3 300 3.02E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS16705 d799065047f9e19b5272471a79f020ef 499 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 382 487 1.4E-12 T 23-04-2016 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS16705 d799065047f9e19b5272471a79f020ef 499 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 18 28 1.2E-26 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS16705 d799065047f9e19b5272471a79f020ef 499 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 79 91 1.2E-26 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS16705 d799065047f9e19b5272471a79f020ef 499 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 315 321 1.2E-26 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS16705 d799065047f9e19b5272471a79f020ef 499 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 348 360 1.2E-26 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS16705 d799065047f9e19b5272471a79f020ef 499 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 5 17 1.2E-26 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS16705 d799065047f9e19b5272471a79f020ef 499 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 34 46 1.2E-26 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS16705 d799065047f9e19b5272471a79f020ef 499 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 10 27 - T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RD1_RS16705 d799065047f9e19b5272471a79f020ef 499 PANTHER PTHR11985 1 487 4.3E-168 T 23-04-2016 RD1_RS16705 d799065047f9e19b5272471a79f020ef 499 Gene3D G3DSA:3.50.50.60 5 239 3.7E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS16705 d799065047f9e19b5272471a79f020ef 499 PANTHER PTHR11985:SF1 1 487 4.3E-168 T 23-04-2016 RD1_RS16705 d799065047f9e19b5272471a79f020ef 499 Pfam PF01266 FAD dependent oxidoreductase 6 329 7.9E-51 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS04155 684b49f664712720ee3842c177dd8e5c 249 SUPERFAMILY SSF161098 49 234 4.19E-30 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04155 684b49f664712720ee3842c177dd8e5c 249 PANTHER PTHR30151:SF0 10 247 3.6E-46 T 23-04-2016 RD1_RS04155 684b49f664712720ee3842c177dd8e5c 249 PANTHER PTHR30151 10 247 3.6E-46 T 23-04-2016 RD1_RS04155 684b49f664712720ee3842c177dd8e5c 249 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 234 1.8E-20 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04155 684b49f664712720ee3842c177dd8e5c 249 Gene3D G3DSA:1.10.3720.10 48 235 3.2E-25 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS02400 eef86e13f18faa2dd3b615dd18d0756e 293 SUPERFAMILY SSF161098 11 293 1.5E-61 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS02400 eef86e13f18faa2dd3b615dd18d0756e 293 PANTHER PTHR32243:SF23 9 293 1.2E-118 T 23-04-2016 RD1_RS02400 eef86e13f18faa2dd3b615dd18d0756e 293 PANTHER PTHR32243 9 293 1.2E-118 T 23-04-2016 RD1_RS02400 eef86e13f18faa2dd3b615dd18d0756e 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 278 2.9E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS02400 eef86e13f18faa2dd3b615dd18d0756e 293 Gene3D G3DSA:1.10.3720.10 10 278 1.0E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS03605 aed015ad742b8f983df9ef98e17d4dad 143 PANTHER PTHR30574:SF1 1 137 2.8E-20 T 23-04-2016 RD1_RS03605 aed015ad742b8f983df9ef98e17d4dad 143 PANTHER PTHR30574 1 137 2.8E-20 T 23-04-2016 RD1_RS03605 aed015ad742b8f983df9ef98e17d4dad 143 Pfam PF04143 Sulphur transport 43 130 7.7E-9 T 23-04-2016 IPR007272 Sulphur transport domain RD1_RS11680 5886ac2618d4ce62c959d5b0476756f7 579 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 37 574 2.3E-153 T 23-04-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 RD1_RS11680 5886ac2618d4ce62c959d5b0476756f7 579 PANTHER PTHR30255:SF2 9 576 1.3E-170 T 23-04-2016 RD1_RS11680 5886ac2618d4ce62c959d5b0476756f7 579 PANTHER PTHR30255 9 576 1.3E-170 T 23-04-2016 RD1_RS11680 5886ac2618d4ce62c959d5b0476756f7 579 Pfam PF02272 DHHA1 domain 384 447 4.5E-10 T 23-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 RD1_RS11680 5886ac2618d4ce62c959d5b0476756f7 579 Pfam PF01368 DHH family 90 214 3.9E-7 T 23-04-2016 IPR001667 DDH domain RD1_RS11680 5886ac2618d4ce62c959d5b0476756f7 579 SUPERFAMILY SSF64182 65 454 8.76E-112 T 23-04-2016 RD1_RS19065 d3a8f7972e4865ed51a4ea5f8f7d54db 111 Gene3D G3DSA:2.102.10.10 1 101 6.0E-28 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS19065 d3a8f7972e4865ed51a4ea5f8f7d54db 111 Pfam PF13806 Rieske-like [2Fe-2S] domain 4 99 3.3E-17 T 23-04-2016 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 RD1_RS19065 d3a8f7972e4865ed51a4ea5f8f7d54db 111 SUPERFAMILY SSF50022 1 102 5.89E-34 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS19065 d3a8f7972e4865ed51a4ea5f8f7d54db 111 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 4 100 6.9E-30 T 23-04-2016 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 RD1_RS19065 d3a8f7972e4865ed51a4ea5f8f7d54db 111 PANTHER PTHR21496 28 98 2.1E-18 T 23-04-2016 RD1_RS14515 96a73971f824825926e58fafd5661f05 100 PANTHER PTHR33175 6 94 1.6E-44 T 23-04-2016 RD1_RS14515 96a73971f824825926e58fafd5661f05 100 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 5 98 3.2E-49 T 23-04-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355|GO:0006417 RD1_RS14515 96a73971f824825926e58fafd5661f05 100 PRINTS PR01727 Prokaryotic integration host factor signature 45 60 6.5E-14 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RD1_RS14515 96a73971f824825926e58fafd5661f05 100 PRINTS PR01727 Prokaryotic integration host factor signature 63 76 6.5E-14 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RD1_RS14515 96a73971f824825926e58fafd5661f05 100 PRINTS PR01727 Prokaryotic integration host factor signature 79 93 6.5E-14 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RD1_RS14515 96a73971f824825926e58fafd5661f05 100 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 51 70 - T 23-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RD1_RS14515 96a73971f824825926e58fafd5661f05 100 SUPERFAMILY SSF47729 6 96 4.86E-28 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RD1_RS14515 96a73971f824825926e58fafd5661f05 100 PANTHER PTHR33175:SF2 6 94 1.6E-44 T 23-04-2016 RD1_RS14515 96a73971f824825926e58fafd5661f05 100 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 4 100 28.619 T 23-04-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355|GO:0006417 RD1_RS14515 96a73971f824825926e58fafd5661f05 100 Pfam PF00216 Bacterial DNA-binding protein 6 94 5.9E-27 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RD1_RS14515 96a73971f824825926e58fafd5661f05 100 SMART SM00411 6 95 1.7E-38 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RD1_RS14515 96a73971f824825926e58fafd5661f05 100 Gene3D G3DSA:4.10.520.10 5 96 1.5E-30 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RD1_RS17490 f3e44e5da7d8a9c7d75aca11ca884c3a 264 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 6 20 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS17490 f3e44e5da7d8a9c7d75aca11ca884c3a 264 SUPERFAMILY SSF53790 2 232 9.95E-60 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS17490 f3e44e5da7d8a9c7d75aca11ca884c3a 264 PANTHER PTHR21091:SF17 1 208 2.1E-58 T 23-04-2016 RD1_RS17490 f3e44e5da7d8a9c7d75aca11ca884c3a 264 Gene3D G3DSA:3.40.1010.10 2 110 1.2E-30 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RD1_RS17490 f3e44e5da7d8a9c7d75aca11ca884c3a 264 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 3 248 2.3E-92 T 23-04-2016 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 RD1_RS17490 f3e44e5da7d8a9c7d75aca11ca884c3a 264 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 208 2.2E-42 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS17490 f3e44e5da7d8a9c7d75aca11ca884c3a 264 PANTHER PTHR21091 1 208 2.1E-58 T 23-04-2016 RD1_RS17490 f3e44e5da7d8a9c7d75aca11ca884c3a 264 Gene3D G3DSA:3.30.950.10 111 229 3.2E-36 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RD1_RS17490 f3e44e5da7d8a9c7d75aca11ca884c3a 264 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 76 109 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RD1_RS14915 50d51d002729bd3e69872d1d23f101b6 261 PANTHER PTHR30457 1 260 8.3E-70 T 23-04-2016 RD1_RS14915 50d51d002729bd3e69872d1d23f101b6 261 SUPERFAMILY SSF64167 1 258 3.79E-72 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 RD1_RS14915 50d51d002729bd3e69872d1d23f101b6 261 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 248 3.6E-54 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 RD1_RS14915 50d51d002729bd3e69872d1d23f101b6 261 Gene3D G3DSA:3.40.1210.10 1 257 5.4E-74 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 RD1_RS14915 50d51d002729bd3e69872d1d23f101b6 261 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 261 31.481 T 23-04-2016 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 RD1_RS14915 50d51d002729bd3e69872d1d23f101b6 261 Pfam PF01975 Survival protein SurE 3 194 1.1E-49 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 RD1_RS13005 9a6001bea3c8f408bb9b2fc6722b7f82 456 PANTHER PTHR11014:SF72 286 455 1.7E-139 T 23-04-2016 RD1_RS13005 9a6001bea3c8f408bb9b2fc6722b7f82 456 PANTHER PTHR11014:SF72 5 268 1.7E-139 T 23-04-2016 RD1_RS13005 9a6001bea3c8f408bb9b2fc6722b7f82 456 Gene3D G3DSA:3.30.70.360 199 365 9.2E-57 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS13005 9a6001bea3c8f408bb9b2fc6722b7f82 456 Pfam PF07687 Peptidase dimerisation domain 198 356 6.7E-24 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS13005 9a6001bea3c8f408bb9b2fc6722b7f82 456 PANTHER PTHR11014 286 455 1.7E-139 T 23-04-2016 RD1_RS13005 9a6001bea3c8f408bb9b2fc6722b7f82 456 PANTHER PTHR11014 5 268 1.7E-139 T 23-04-2016 RD1_RS13005 9a6001bea3c8f408bb9b2fc6722b7f82 456 Gene3D G3DSA:3.40.630.10 369 455 7.0E-60 T 23-04-2016 RD1_RS13005 9a6001bea3c8f408bb9b2fc6722b7f82 456 Gene3D G3DSA:3.40.630.10 5 193 7.0E-60 T 23-04-2016 RD1_RS13005 9a6001bea3c8f408bb9b2fc6722b7f82 456 Pfam PF01546 Peptidase family M20/M25/M40 81 453 2.9E-35 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RD1_RS13005 9a6001bea3c8f408bb9b2fc6722b7f82 456 SUPERFAMILY SSF53187 4 199 3.67E-62 T 23-04-2016 RD1_RS13005 9a6001bea3c8f408bb9b2fc6722b7f82 456 SUPERFAMILY SSF53187 370 455 3.67E-62 T 23-04-2016 RD1_RS19300 c3e1499f84469049f3bbaf437f70bd07 152 TIGRFAM TIGR02241 TIGR02241: conserved hypothetical phage tail region protein 14 149 8.9E-37 T 23-04-2016 IPR011747 Conserved hypothetical protein CHP02241 RD1_RS19300 c3e1499f84469049f3bbaf437f70bd07 152 PANTHER PTHR38009 7 151 6.3E-22 T 23-04-2016 RD1_RS19300 c3e1499f84469049f3bbaf437f70bd07 152 PANTHER PTHR38009:SF1 7 151 6.3E-22 T 23-04-2016 RD1_RS19300 c3e1499f84469049f3bbaf437f70bd07 152 Pfam PF06841 T4-like virus tail tube protein gp19 17 147 6.7E-43 T 23-04-2016 IPR010667 Bacteriophage T4, Gp19, tail tube GO:0005198 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 SMART SM00191 445 510 49.0 T 23-04-2016 IPR013519 Integrin alpha beta-propellor Reactome: REACT_13552 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 SMART SM00191 600 653 0.18 T 23-04-2016 IPR013519 Integrin alpha beta-propellor Reactome: REACT_13552 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 SMART SM00191 522 579 0.05 T 23-04-2016 IPR013519 Integrin alpha beta-propellor Reactome: REACT_13552 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 SMART SM00191 299 355 5.1E-8 T 23-04-2016 IPR013519 Integrin alpha beta-propellor Reactome: REACT_13552 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 SMART SM00191 371 433 0.15 T 23-04-2016 IPR013519 Integrin alpha beta-propellor Reactome: REACT_13552 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 SMART SM00191 221 276 7.6E-4 T 23-04-2016 IPR013519 Integrin alpha beta-propellor Reactome: REACT_13552 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 SUPERFAMILY SSF51120 4 71 4.84E-15 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 Gene3D G3DSA:2.150.10.10 11 201 6.8E-44 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 PRINTS PR00313 NodO calcium binding signature 48 56 4.0E-10 T 23-04-2016 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 PRINTS PR00313 NodO calcium binding signature 111 119 4.0E-10 T 23-04-2016 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 PRINTS PR00313 NodO calcium binding signature 138 147 4.0E-10 T 23-04-2016 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 PRINTS PR00313 NodO calcium binding signature 36 47 4.0E-10 T 23-04-2016 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 SUPERFAMILY SSF51120 51 197 4.32E-31 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 PANTHER PTHR23221 223 641 2.2E-15 T 23-04-2016 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 PANTHER PTHR23221:SF8 223 641 2.2E-15 T 23-04-2016 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 SUPERFAMILY SSF69318 128 474 2.62E-15 T 23-04-2016 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 SUPERFAMILY SSF69318 422 636 1.24E-12 T 23-04-2016 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 Gene3D G3DSA:2.130.10.130 435 641 6.3E-14 T 23-04-2016 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 Pfam PF01839 FG-GAP repeat 380 406 1.8E-6 T 23-04-2016 IPR013517 FG-GAP repeat Reactome: REACT_13552 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 Pfam PF01839 FG-GAP repeat 306 328 1.1E-4 T 23-04-2016 IPR013517 FG-GAP repeat Reactome: REACT_13552 RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 116 134 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 107 125 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 89 107 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 80 98 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 17 35 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 26 44 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS11455 3d3cacef17dc6104907a750e1218902b 678 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 35 53 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS06865 481dfd8dbc0cf76e6009ad740775a3ad 276 PANTHER PTHR32243 3 276 2.4E-107 T 23-04-2016 RD1_RS06865 481dfd8dbc0cf76e6009ad740775a3ad 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 261 1.3E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS06865 481dfd8dbc0cf76e6009ad740775a3ad 276 Gene3D G3DSA:1.10.3720.10 8 264 4.1E-51 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS06865 481dfd8dbc0cf76e6009ad740775a3ad 276 PANTHER PTHR32243:SF11 3 276 2.4E-107 T 23-04-2016 RD1_RS06865 481dfd8dbc0cf76e6009ad740775a3ad 276 SUPERFAMILY SSF161098 9 276 1.87E-59 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00940 01cf8d52fc6b37a3e725e94d868083d2 283 SMART SM00898 2 125 7.3E-56 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RD1_RS00940 01cf8d52fc6b37a3e725e94d868083d2 283 Pfam PF06827 Zinc finger found in FPG and IleRS 265 282 2.3E-4 T 23-04-2016 IPR010663 Zinc finger, FPG/IleRS-type RD1_RS00940 01cf8d52fc6b37a3e725e94d868083d2 283 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 282 2.7E-87 T 23-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RD1_RS00940 01cf8d52fc6b37a3e725e94d868083d2 283 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 283 43.797 T 23-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RD1_RS00940 01cf8d52fc6b37a3e725e94d868083d2 283 SUPERFAMILY SSF57716 229 282 2.71E-13 T 23-04-2016 RD1_RS00940 01cf8d52fc6b37a3e725e94d868083d2 283 SUPERFAMILY SSF81624 2 150 6.02E-39 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RD1_RS00940 01cf8d52fc6b37a3e725e94d868083d2 283 SUPERFAMILY SSF46946 141 229 1.91E-30 T 23-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RD1_RS00940 01cf8d52fc6b37a3e725e94d868083d2 283 Gene3D G3DSA:1.10.8.50 142 283 9.3E-49 T 23-04-2016 RD1_RS00940 01cf8d52fc6b37a3e725e94d868083d2 283 PANTHER PTHR22993 1 283 7.2E-116 T 23-04-2016 RD1_RS00940 01cf8d52fc6b37a3e725e94d868083d2 283 SMART SM01232 141 233 2.2E-47 T 23-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RD1_RS00940 01cf8d52fc6b37a3e725e94d868083d2 283 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 124 2.0E-36 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RD1_RS00940 01cf8d52fc6b37a3e725e94d868083d2 283 Gene3D G3DSA:3.20.190.10 2 141 4.1E-41 T 23-04-2016 RD1_RS00940 01cf8d52fc6b37a3e725e94d868083d2 283 PANTHER PTHR22993:SF15 1 283 7.2E-116 T 23-04-2016 RD1_RS00940 01cf8d52fc6b37a3e725e94d868083d2 283 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 141 230 4.8E-25 T 23-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RD1_RS07955 c3e4cf030345708589df71ca55c92028 342 SUPERFAMILY SSF53697 6 340 4.45E-66 T 23-04-2016 RD1_RS07955 c3e4cf030345708589df71ca55c92028 342 Gene3D G3DSA:3.40.50.10490 5 168 2.5E-25 T 23-04-2016 RD1_RS07955 c3e4cf030345708589df71ca55c92028 342 PANTHER PTHR10937 7 341 2.3E-97 T 23-04-2016 RD1_RS07955 c3e4cf030345708589df71ca55c92028 342 Pfam PF01380 SIS domain 46 159 1.4E-12 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RD1_RS07955 c3e4cf030345708589df71ca55c92028 342 Pfam PF01380 SIS domain 200 283 3.0E-10 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RD1_RS07955 c3e4cf030345708589df71ca55c92028 342 PANTHER PTHR10937:SF8 7 341 2.3E-97 T 23-04-2016 RD1_RS07955 c3e4cf030345708589df71ca55c92028 342 Gene3D G3DSA:3.40.50.10490 180 340 3.0E-37 T 23-04-2016 RD1_RS02310 4b146c1842b5fa9bd76c4636a7403627 253 Gene3D G3DSA:3.60.10.10 5 251 1.2E-12 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS02310 4b146c1842b5fa9bd76c4636a7403627 253 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 12 205 2.4E-12 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS02310 4b146c1842b5fa9bd76c4636a7403627 253 SUPERFAMILY SSF56219 9 251 1.83E-28 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 Gene3D G3DSA:3.40.50.1980 19 214 5.8E-64 T 23-04-2016 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 Gene3D G3DSA:3.40.50.1980 215 365 4.0E-55 T 23-04-2016 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 PRINTS PR00083 Histidinol dehydrogenase signature 220 241 2.7E-67 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 PRINTS PR00083 Histidinol dehydrogenase signature 24 48 2.7E-67 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 PRINTS PR00083 Histidinol dehydrogenase signature 354 372 2.7E-67 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 PRINTS PR00083 Histidinol dehydrogenase signature 242 261 2.7E-67 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 PRINTS PR00083 Histidinol dehydrogenase signature 191 216 2.7E-67 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 PRINTS PR00083 Histidinol dehydrogenase signature 161 187 2.7E-67 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 PRINTS PR00083 Histidinol dehydrogenase signature 98 125 2.7E-67 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 PRINTS PR00083 Histidinol dehydrogenase signature 313 338 2.7E-67 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 PANTHER PTHR21256 6 426 5.2E-161 T 23-04-2016 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 24 419 6.9E-137 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 220 252 - T 23-04-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 PIRSF PIRSF000099 1 423 7.0E-122 T 23-04-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 SUPERFAMILY SSF53720 18 422 1.14E-64 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 Pfam PF00815 Histidinol dehydrogenase 14 420 9.6E-136 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS17435 077b6c632a7ae59227fc64ae45d5f735 435 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 3 420 32.604 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RD1_RS17985 86930d4ed10d8d16562aabcc31bd019d 144 SUPERFAMILY SSF54534 4 141 1.89E-40 T 23-04-2016 RD1_RS17985 86930d4ed10d8d16562aabcc31bd019d 144 PANTHER PTHR10516 131 141 1.0E-25 T 23-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type RD1_RS17985 86930d4ed10d8d16562aabcc31bd019d 144 PANTHER PTHR10516 4 89 1.0E-25 T 23-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type RD1_RS17985 86930d4ed10d8d16562aabcc31bd019d 144 Gene3D G3DSA:3.10.50.40 3 81 1.4E-30 T 23-04-2016 RD1_RS17985 86930d4ed10d8d16562aabcc31bd019d 144 Gene3D G3DSA:3.10.50.40 128 142 1.4E-30 T 23-04-2016 RD1_RS17985 86930d4ed10d8d16562aabcc31bd019d 144 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 4 138 3.5E-25 T 23-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 RD1_RS11685 196f95c772bdc410925a6e4fc26f97aa 324 Gene3D G3DSA:3.30.540.10 9 179 5.4E-60 T 23-04-2016 RD1_RS11685 196f95c772bdc410925a6e4fc26f97aa 324 Gene3D G3DSA:3.30.540.10 180 314 3.1E-36 T 23-04-2016 RD1_RS11685 196f95c772bdc410925a6e4fc26f97aa 324 PANTHER PTHR30447:SF0 1 314 1.1E-145 T 23-04-2016 RD1_RS11685 196f95c772bdc410925a6e4fc26f97aa 324 PANTHER PTHR30447 1 314 1.1E-145 T 23-04-2016 RD1_RS11685 196f95c772bdc410925a6e4fc26f97aa 324 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 10 314 1.5E-98 T 23-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RD1_RS11685 196f95c772bdc410925a6e4fc26f97aa 324 SUPERFAMILY SSF56655 8 315 2.29E-102 T 23-04-2016 RD1_RS11685 196f95c772bdc410925a6e4fc26f97aa 324 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 11 314 2.7E-131 T 23-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RD1_RS11685 196f95c772bdc410925a6e4fc26f97aa 324 PIRSF PIRSF004532 8 323 9.0E-133 T 23-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RD1_RS03400 d09a0f7086d2d818ac3ca21dd69f7c92 218 Pfam PF07729 FCD domain 83 209 3.9E-21 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS03400 d09a0f7086d2d818ac3ca21dd69f7c92 218 Gene3D G3DSA:1.20.120.530 75 215 1.3E-22 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS03400 d09a0f7086d2d818ac3ca21dd69f7c92 218 SUPERFAMILY SSF46785 7 75 3.56E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03400 d09a0f7086d2d818ac3ca21dd69f7c92 218 SUPERFAMILY SSF48008 79 216 1.46E-21 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS03400 d09a0f7086d2d818ac3ca21dd69f7c92 218 SMART SM00895 81 210 2.9E-19 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS03400 d09a0f7086d2d818ac3ca21dd69f7c92 218 Gene3D G3DSA:1.10.10.10 3 71 1.9E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03400 d09a0f7086d2d818ac3ca21dd69f7c92 218 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 3.4E-7 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 Gene3D G3DSA:2.150.10.10 3 137 9.9E-26 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 Gene3D G3DSA:2.150.10.10 154 342 5.6E-42 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 PRINTS PR00313 NodO calcium binding signature 188 199 8.6E-14 T 23-04-2016 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 PRINTS PR00313 NodO calcium binding signature 254 262 8.6E-14 T 23-04-2016 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 PRINTS PR00313 NodO calcium binding signature 227 235 8.6E-14 T 23-04-2016 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 PRINTS PR00313 NodO calcium binding signature 263 272 8.6E-14 T 23-04-2016 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 23 44 9.0E-5 T 23-04-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 245 266 9.0E-5 T 23-04-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 SUPERFAMILY SSF51120 3 140 3.01E-25 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 232 250 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 214 232 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 250 268 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 241 259 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 37 55 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 28 46 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 178 196 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 196 214 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 160 178 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 SUPERFAMILY SSF51120 154 340 6.11E-32 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 227 243 0.12 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 155 171 0.0067 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 209 225 0.28 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 245 261 0.0013 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 191 207 0.069 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 58 75 0.67 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 173 189 0.84 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 22 39 0.0078 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 263 279 4.8 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 40 55 0.011 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4 15 34.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 PANTHER PTHR38340 1 48 1.8E-12 T 23-04-2016 RD1_RS15910 71d4cc4ad53647fbe37c0770bf82d2b3 342 PANTHER PTHR38340 172 327 1.8E-12 T 23-04-2016 RD1_RS09070 786456bdf0d03fa66e177d687a2d167c 215 SUPERFAMILY SSF46785 8 95 8.1E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS09070 786456bdf0d03fa66e177d687a2d167c 215 SMART SM00345 9 66 1.4E-13 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS09070 786456bdf0d03fa66e177d687a2d167c 215 PANTHER PTHR11751 8 92 4.5E-23 T 23-04-2016 RD1_RS09070 786456bdf0d03fa66e177d687a2d167c 215 Gene3D G3DSA:1.10.10.10 3 66 6.8E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS09070 786456bdf0d03fa66e177d687a2d167c 215 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 27 41 8.3E-7 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS09070 786456bdf0d03fa66e177d687a2d167c 215 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 57 8.3E-7 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS09070 786456bdf0d03fa66e177d687a2d167c 215 Gene3D G3DSA:1.20.120.530 69 205 1.1E-31 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS09070 786456bdf0d03fa66e177d687a2d167c 215 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 62 8.6E-17 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS09070 786456bdf0d03fa66e177d687a2d167c 215 Pfam PF07729 FCD domain 76 196 4.2E-23 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS09070 786456bdf0d03fa66e177d687a2d167c 215 SUPERFAMILY SSF48008 73 199 1.44E-24 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS09070 786456bdf0d03fa66e177d687a2d167c 215 SMART SM00895 76 198 1.0E-20 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS10965 d120132a812cdcb13ae696910f128762 397 PANTHER PTHR11271 26 165 4.3E-70 T 23-04-2016 RD1_RS10965 d120132a812cdcb13ae696910f128762 397 PANTHER PTHR11271 183 396 4.3E-70 T 23-04-2016 RD1_RS10965 d120132a812cdcb13ae696910f128762 397 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 25 396 8.8E-128 T 23-04-2016 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399 RD1_RS10965 d120132a812cdcb13ae696910f128762 397 Gene3D G3DSA:2.30.40.10 21 117 1.0E-8 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS10965 d120132a812cdcb13ae696910f128762 397 Gene3D G3DSA:2.30.40.10 309 375 7.2E-5 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS10965 d120132a812cdcb13ae696910f128762 397 SUPERFAMILY SSF51338 21 72 2.99E-6 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS10965 d120132a812cdcb13ae696910f128762 397 SUPERFAMILY SSF51556 71 364 1.16E-14 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS10965 d120132a812cdcb13ae696910f128762 397 PIRSF PIRSF038971 20 397 3.3E-169 T 23-04-2016 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399 RD1_RS10965 d120132a812cdcb13ae696910f128762 397 PANTHER PTHR11271:SF43 26 165 4.3E-70 T 23-04-2016 RD1_RS10965 d120132a812cdcb13ae696910f128762 397 PANTHER PTHR11271:SF43 183 396 4.3E-70 T 23-04-2016 RD1_RS11150 7b119d7d875b6cfce545b8c1723d3693 367 PANTHER PTHR24220 15 265 1.9E-118 T 23-04-2016 RD1_RS11150 7b119d7d875b6cfce545b8c1723d3693 367 SMART SM00382 38 221 5.2E-20 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS11150 7b119d7d875b6cfce545b8c1723d3693 367 Gene3D G3DSA:3.40.50.300 14 244 2.1E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11150 7b119d7d875b6cfce545b8c1723d3693 367 Pfam PF00005 ABC transporter 30 172 2.8E-35 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS11150 7b119d7d875b6cfce545b8c1723d3693 367 PANTHER PTHR24220:SF150 15 265 1.9E-118 T 23-04-2016 RD1_RS11150 7b119d7d875b6cfce545b8c1723d3693 367 SUPERFAMILY SSF52540 14 253 1.64E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11150 7b119d7d875b6cfce545b8c1723d3693 367 SUPERFAMILY SSF50331 247 339 1.81E-6 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS11150 7b119d7d875b6cfce545b8c1723d3693 367 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS14220 79792780a72314467041300887ac7bad 429 Pfam PF10011 Predicted membrane protein (DUF2254) 20 378 3.2E-87 T 23-04-2016 IPR018723 Protein of unknown function DUF2254, membrane RD1_RS17510 deae848802a027124c18e869b0606e2d 249 PANTHER PTHR21091:SF9 3 169 1.5E-36 T 23-04-2016 RD1_RS17510 deae848802a027124c18e869b0606e2d 249 Gene3D G3DSA:3.30.950.10 119 228 2.1E-6 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RD1_RS17510 deae848802a027124c18e869b0606e2d 249 PANTHER PTHR21091 3 169 1.5E-36 T 23-04-2016 RD1_RS17510 deae848802a027124c18e869b0606e2d 249 SUPERFAMILY SSF53790 2 235 1.05E-43 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS17510 deae848802a027124c18e869b0606e2d 249 Gene3D G3DSA:3.40.1010.10 3 118 2.3E-25 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RD1_RS17510 deae848802a027124c18e869b0606e2d 249 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 6 248 3.6E-84 T 23-04-2016 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 RD1_RS17510 deae848802a027124c18e869b0606e2d 249 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 213 4.4E-29 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS11535 aa6ee580ad3c3be6732152f24361d88e 247 SUPERFAMILY SSF144091 11 213 2.22E-45 T 23-04-2016 RD1_RS11535 aa6ee580ad3c3be6732152f24361d88e 247 Pfam PF01694 Rhomboid family 59 211 2.4E-39 T 23-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RD1_RS11535 aa6ee580ad3c3be6732152f24361d88e 247 PANTHER PTHR22936 1 206 2.8E-46 T 23-04-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 RD1_RS11535 aa6ee580ad3c3be6732152f24361d88e 247 Gene3D G3DSA:1.20.1540.10 12 208 6.8E-47 T 23-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RD1_RS04320 51226cd5e6eecbb6a6cf10a7d4eb901f 199 Pfam PF05494 MlaC protein 38 196 6.8E-31 T 23-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC RD1_RS04320 51226cd5e6eecbb6a6cf10a7d4eb901f 199 Gene3D G3DSA:1.10.10.640 73 112 3.4E-10 T 23-04-2016 IPR023094 Toluene tolerance protein, alpha-helical RD1_RS04320 51226cd5e6eecbb6a6cf10a7d4eb901f 199 Gene3D G3DSA:1.10.10.640 168 197 3.4E-10 T 23-04-2016 IPR023094 Toluene tolerance protein, alpha-helical RD1_RS04320 51226cd5e6eecbb6a6cf10a7d4eb901f 199 PANTHER PTHR36573 3 196 9.4E-15 T 23-04-2016 RD1_RS20560 246a40753cf245ec39bc076c8aa48cc2 371 SUPERFAMILY SSF51395 2 169 4.58E-60 T 23-04-2016 RD1_RS20560 246a40753cf245ec39bc076c8aa48cc2 371 PANTHER PTHR11938:SF1 1 371 3.2E-186 T 23-04-2016 RD1_RS20560 246a40753cf245ec39bc076c8aa48cc2 371 Gene3D G3DSA:3.20.20.70 1 170 1.8E-71 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS20560 246a40753cf245ec39bc076c8aa48cc2 371 Pfam PF01493 GXGXG motif 213 371 4.8E-65 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS20560 246a40753cf245ec39bc076c8aa48cc2 371 PANTHER PTHR11938 1 371 3.2E-186 T 23-04-2016 RD1_RS20560 246a40753cf245ec39bc076c8aa48cc2 371 SUPERFAMILY SSF69336 186 371 2.75E-67 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS20560 246a40753cf245ec39bc076c8aa48cc2 371 Gene3D G3DSA:2.160.20.60 189 371 6.8E-69 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS20560 246a40753cf245ec39bc076c8aa48cc2 371 Pfam PF01645 Conserved region in glutamate synthase 2 134 7.2E-59 T 23-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RD1_RS01495 1eaa568c26f2b8e071a3ee3d8afedea2 276 SUPERFAMILY SSF53474 1 274 7.5E-87 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS01495 1eaa568c26f2b8e071a3ee3d8afedea2 276 Gene3D G3DSA:3.40.50.1820 1 274 5.1E-75 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS01495 1eaa568c26f2b8e071a3ee3d8afedea2 276 Pfam PF00756 Putative esterase 21 268 3.4E-55 T 23-04-2016 IPR000801 Putative esterase RD1_RS01495 1eaa568c26f2b8e071a3ee3d8afedea2 276 PANTHER PTHR10061 1 276 1.2E-151 T 23-04-2016 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801 RD1_RS01495 1eaa568c26f2b8e071a3ee3d8afedea2 276 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 2 274 2.5E-127 T 23-04-2016 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801 RD1_RS13955 c62f741f32c23d80bedb1c43f83f1602 177 SUPERFAMILY SSF55729 4 160 1.75E-29 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS13955 c62f741f32c23d80bedb1c43f83f1602 177 Pfam PF13302 Acetyltransferase (GNAT) domain 12 154 1.6E-23 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS13955 c62f741f32c23d80bedb1c43f83f1602 177 PANTHER PTHR13256 8 156 2.0E-20 T 23-04-2016 RD1_RS13955 c62f741f32c23d80bedb1c43f83f1602 177 Gene3D G3DSA:3.40.630.30 2 173 8.1E-36 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS04485 41047aad7fece49a0cb91721e512f8c3 290 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 1 276 9.3E-33 T 23-04-2016 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 RD1_RS06300 254ea30643c8c6d663e75bd568602707 134 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 91 2.2E-16 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RD1_RS06300 254ea30643c8c6d663e75bd568602707 134 Gene3D G3DSA:3.90.470.20 1 128 2.7E-37 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RD1_RS06300 254ea30643c8c6d663e75bd568602707 134 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 91 4.0E-38 T 23-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RD1_RS06300 254ea30643c8c6d663e75bd568602707 134 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 129 1.1E-26 T 23-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RD1_RS06300 254ea30643c8c6d663e75bd568602707 134 SUPERFAMILY SSF56214 1 128 9.42E-28 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RD1_RS06300 254ea30643c8c6d663e75bd568602707 134 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 129 22.958 T 23-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RD1_RS06300 254ea30643c8c6d663e75bd568602707 134 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 1 129 6.4E-20 T 23-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RD1_RS14405 6004611fbfcb3f18549bf888e6d48ee0 271 TIGRFAM TIGR00444 mazG: MazG family protein 19 265 4.5E-89 T 23-04-2016 IPR011551 NTP pyrophosphohydrolase MazG RD1_RS14405 6004611fbfcb3f18549bf888e6d48ee0 271 PANTHER PTHR30522 13 271 1.5E-118 T 23-04-2016 RD1_RS14405 6004611fbfcb3f18549bf888e6d48ee0 271 PANTHER PTHR30522:SF0 13 271 1.5E-118 T 23-04-2016 IPR011551 NTP pyrophosphohydrolase MazG RD1_RS14405 6004611fbfcb3f18549bf888e6d48ee0 271 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 175 235 6.0E-9 T 23-04-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RD1_RS14405 6004611fbfcb3f18549bf888e6d48ee0 271 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 36 109 2.5E-23 T 23-04-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RD1_RS14405 6004611fbfcb3f18549bf888e6d48ee0 271 SUPERFAMILY SSF101386 13 115 5.4E-22 T 23-04-2016 RD1_RS14405 6004611fbfcb3f18549bf888e6d48ee0 271 Gene3D G3DSA:1.10.287.1080 143 228 4.5E-14 T 23-04-2016 RD1_RS14405 6004611fbfcb3f18549bf888e6d48ee0 271 Gene3D G3DSA:1.10.287.1080 28 77 2.9E-6 T 23-04-2016 RD1_RS14405 6004611fbfcb3f18549bf888e6d48ee0 271 SUPERFAMILY SSF101386 147 243 3.36E-25 T 23-04-2016 RD1_RS12930 e54acb7903b588152f53d3f7f6c86bf1 186 Pfam PF10369 Small subunit of acetolactate synthase 112 185 4.1E-25 T 23-04-2016 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS12930 e54acb7903b588152f53d3f7f6c86bf1 186 SUPERFAMILY SSF55021 107 186 9.73E-25 T 23-04-2016 RD1_RS12930 e54acb7903b588152f53d3f7f6c86bf1 186 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 28 103 1.0E-34 T 23-04-2016 RD1_RS12930 e54acb7903b588152f53d3f7f6c86bf1 186 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 28 186 1.2E-53 T 23-04-2016 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS12930 e54acb7903b588152f53d3f7f6c86bf1 186 Gene3D G3DSA:3.30.70.1150 111 186 6.8E-28 T 23-04-2016 RD1_RS12930 e54acb7903b588152f53d3f7f6c86bf1 186 PANTHER PTHR30239 24 186 7.6E-71 T 23-04-2016 RD1_RS12930 e54acb7903b588152f53d3f7f6c86bf1 186 Gene3D G3DSA:3.30.70.260 27 104 4.9E-32 T 23-04-2016 RD1_RS12930 e54acb7903b588152f53d3f7f6c86bf1 186 Pfam PF01842 ACT domain 29 90 1.0E-11 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RD1_RS12930 e54acb7903b588152f53d3f7f6c86bf1 186 SUPERFAMILY SSF55021 28 103 3.82E-19 T 23-04-2016 RD1_RS09375 a418aa023e1ded0ba5170e4a6d69a1b6 214 SUPERFAMILY SSF50199 19 142 1.03E-28 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RD1_RS09375 a418aa023e1ded0ba5170e4a6d69a1b6 214 SMART SM00318 18 139 2.3E-9 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RD1_RS09375 a418aa023e1ded0ba5170e4a6d69a1b6 214 Pfam PF00565 Staphylococcal nuclease homologue 36 136 2.7E-11 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RD1_RS09375 a418aa023e1ded0ba5170e4a6d69a1b6 214 PANTHER PTHR12302:SF0 19 159 2.1E-22 T 23-04-2016 RD1_RS09375 a418aa023e1ded0ba5170e4a6d69a1b6 214 PANTHER PTHR12302 19 159 2.1E-22 T 23-04-2016 RD1_RS09375 a418aa023e1ded0ba5170e4a6d69a1b6 214 Gene3D G3DSA:2.40.50.90 18 112 6.5E-20 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RD1_RS04390 0f8718373afef748f1e86cf8f4e22bc9 246 Gene3D G3DSA:3.40.630.30 144 237 3.6E-18 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS04390 0f8718373afef748f1e86cf8f4e22bc9 246 Pfam PF00583 Acetyltransferase (GNAT) family 154 227 5.3E-10 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS04390 0f8718373afef748f1e86cf8f4e22bc9 246 SUPERFAMILY SSF55729 56 234 5.15E-22 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS01465 deb82b152cf06ce7e99f772e95e874ad 460 PRINTS PR00481 Cytosol aminopeptidase signature 332 347 4.3E-45 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RD1_RS01465 deb82b152cf06ce7e99f772e95e874ad 460 PRINTS PR00481 Cytosol aminopeptidase signature 282 303 4.3E-45 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RD1_RS01465 deb82b152cf06ce7e99f772e95e874ad 460 PRINTS PR00481 Cytosol aminopeptidase signature 304 324 4.3E-45 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RD1_RS01465 deb82b152cf06ce7e99f772e95e874ad 460 PRINTS PR00481 Cytosol aminopeptidase signature 245 266 4.3E-45 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RD1_RS01465 deb82b152cf06ce7e99f772e95e874ad 460 PRINTS PR00481 Cytosol aminopeptidase signature 223 240 4.3E-45 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RD1_RS01465 deb82b152cf06ce7e99f772e95e874ad 460 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 308 315 - T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RD1_RS01465 deb82b152cf06ce7e99f772e95e874ad 460 SUPERFAMILY SSF53187 144 455 1.6E-102 T 23-04-2016 RD1_RS01465 deb82b152cf06ce7e99f772e95e874ad 460 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 150 450 3.6E-98 T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RD1_RS01465 deb82b152cf06ce7e99f772e95e874ad 460 PANTHER PTHR11963:SF13 139 458 3.9E-127 T 23-04-2016 RD1_RS01465 deb82b152cf06ce7e99f772e95e874ad 460 PANTHER PTHR11963 139 458 3.9E-127 T 23-04-2016 RD1_RS01465 deb82b152cf06ce7e99f772e95e874ad 460 Gene3D G3DSA:3.40.630.10 139 457 2.3E-111 T 23-04-2016 RD1_RS17705 4530f9097531af1c9ff84ad0227f1ba6 184 Pfam PF16867 Dimethlysulfonioproprionate lyase 17 169 1.3E-23 T 23-04-2016 IPR031723 Dimethlysulfonioproprionate lyase DddL GO:0047869 KEGG: 00920+4.4.1.3|MetaCyc: PWY-6046|MetaCyc: PWY-6049 RD1_RS17705 4530f9097531af1c9ff84ad0227f1ba6 184 Gene3D G3DSA:2.60.120.10 82 173 2.2E-12 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS17705 4530f9097531af1c9ff84ad0227f1ba6 184 SUPERFAMILY SSF51182 89 178 1.92E-12 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 SUPERFAMILY SSF47384 649 730 9.81E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 PANTHER PTHR24423:SF382 642 1065 8.7E-104 T 23-04-2016 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 PANTHER PTHR24423:SF382 491 528 8.7E-104 T 23-04-2016 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 PANTHER PTHR24423:SF382 5 15 8.7E-104 T 23-04-2016 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 SMART SM00387 776 884 1.7E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 Pfam PF00072 Response regulator receiver domain 916 1025 1.2E-18 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 PANTHER PTHR24423 642 1065 8.7E-104 T 23-04-2016 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 PANTHER PTHR24423 491 528 8.7E-104 T 23-04-2016 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 PANTHER PTHR24423 5 15 8.7E-104 T 23-04-2016 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 Pfam PF00512 His Kinase A (phospho-acceptor) domain 664 729 1.6E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 SMART SM00388 663 729 3.2E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 777 882 4.4E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 Gene3D G3DSA:3.30.565.10 730 885 1.7E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 SUPERFAMILY SSF52172 912 1039 4.27E-29 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 PRINTS PR00344 Bacterial sensor protein C-terminal signature 830 840 7.0E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 PRINTS PR00344 Bacterial sensor protein C-terminal signature 812 826 7.0E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 PRINTS PR00344 Bacterial sensor protein C-terminal signature 868 881 7.0E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 PRINTS PR00344 Bacterial sensor protein C-terminal signature 844 862 7.0E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 Gene3D G3DSA:3.40.50.2300 912 1033 2.2E-27 T 23-04-2016 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 Gene3D G3DSA:1.10.287.130 655 725 4.7E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 SUPERFAMILY SSF55874 719 880 2.62E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16540 3be45c6428cf349bf6539e73c7acac83 1115 SMART SM00448 913 1025 1.3E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS03260 3dadf95aa16096861d78e4aba51c0d6b 411 SUPERFAMILY SSF56801 118 379 5.49E-24 T 23-04-2016 RD1_RS03260 3dadf95aa16096861d78e4aba51c0d6b 411 PANTHER PTHR36932:SF1 12 365 4.1E-56 T 23-04-2016 RD1_RS03260 3dadf95aa16096861d78e4aba51c0d6b 411 Pfam PF00501 AMP-binding enzyme 146 278 4.2E-5 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RD1_RS03260 3dadf95aa16096861d78e4aba51c0d6b 411 PANTHER PTHR36932 12 365 4.1E-56 T 23-04-2016 RD1_RS03260 3dadf95aa16096861d78e4aba51c0d6b 411 Pfam PF14535 AMP-binding enzyme C-terminal domain 326 399 7.7E-6 T 23-04-2016 IPR028154 AMP-dependent ligase, C-terminal RD1_RS03260 3dadf95aa16096861d78e4aba51c0d6b 411 Gene3D G3DSA:3.30.300.30 316 399 3.7E-12 T 23-04-2016 RD1_RS05730 de155fa1a6bbf24398301e32faf3ed32 499 SUPERFAMILY SSF56601 50 461 5.01E-75 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS05730 de155fa1a6bbf24398301e32faf3ed32 499 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 53 455 1.2E-54 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RD1_RS05730 de155fa1a6bbf24398301e32faf3ed32 499 PANTHER PTHR30023:SF0 9 481 3.3E-44 T 23-04-2016 RD1_RS05730 de155fa1a6bbf24398301e32faf3ed32 499 PANTHER PTHR30023 9 481 3.3E-44 T 23-04-2016 RD1_RS05730 de155fa1a6bbf24398301e32faf3ed32 499 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 81 453 1.2E-46 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RD1_RS05730 de155fa1a6bbf24398301e32faf3ed32 499 Gene3D G3DSA:3.40.710.10 57 106 2.9E-6 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS05730 de155fa1a6bbf24398301e32faf3ed32 499 Gene3D G3DSA:3.40.710.10 261 466 2.2E-42 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS05730 de155fa1a6bbf24398301e32faf3ed32 499 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 432 445 6.0E-19 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RD1_RS05730 de155fa1a6bbf24398301e32faf3ed32 499 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 84 103 6.0E-19 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RD1_RS05730 de155fa1a6bbf24398301e32faf3ed32 499 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 360 374 6.0E-19 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RD1_RS05730 de155fa1a6bbf24398301e32faf3ed32 499 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 303 325 6.0E-19 T 23-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RD1_RS17290 757195845c8ed5fdee4a7523e85e40ad 240 Pfam PF00775 Dioxygenase 45 227 4.8E-55 T 23-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RD1_RS17290 757195845c8ed5fdee4a7523e85e40ad 240 Pfam PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal 8 40 2.3E-13 T 23-04-2016 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|UniPathway: UPA00157 RD1_RS17290 757195845c8ed5fdee4a7523e85e40ad 240 TIGRFAM TIGR02422 protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit 14 235 1.2E-106 T 23-04-2016 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit GO:0005506|GO:0018578|GO:0019619|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|UniPathway: UPA00157 RD1_RS17290 757195845c8ed5fdee4a7523e85e40ad 240 SUPERFAMILY SSF49482 6 236 4.45E-77 T 23-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RD1_RS17290 757195845c8ed5fdee4a7523e85e40ad 240 PANTHER PTHR33711 9 240 1.1E-107 T 23-04-2016 RD1_RS17290 757195845c8ed5fdee4a7523e85e40ad 240 PANTHER PTHR33711:SF1 9 240 1.1E-107 T 23-04-2016 RD1_RS17290 757195845c8ed5fdee4a7523e85e40ad 240 Gene3D G3DSA:2.60.130.10 11 235 2.3E-78 T 23-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RD1_RS16555 85447462d86566359bd4bf60bb5eb0c0 377 PANTHER PTHR30482:SF1 1 81 3.3E-99 T 23-04-2016 RD1_RS16555 85447462d86566359bd4bf60bb5eb0c0 377 PANTHER PTHR30482:SF1 112 377 3.3E-99 T 23-04-2016 RD1_RS16555 85447462d86566359bd4bf60bb5eb0c0 377 PANTHER PTHR30482 1 81 3.3E-99 T 23-04-2016 RD1_RS16555 85447462d86566359bd4bf60bb5eb0c0 377 PANTHER PTHR30482 112 377 3.3E-99 T 23-04-2016 RD1_RS16555 85447462d86566359bd4bf60bb5eb0c0 377 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 29 347 4.3E-136 T 23-04-2016 IPR017778 ABC transporter, urea, permease protein, UrtC RD1_RS16555 85447462d86566359bd4bf60bb5eb0c0 377 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 337 1.2E-34 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS19275 aa2ade02334ef45d94918037f9839184 431 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 417 4.8E-29 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD1_RS19275 aa2ade02334ef45d94918037f9839184 431 Gene3D G3DSA:3.40.190.10 31 155 1.8E-25 T 23-04-2016 RD1_RS19275 aa2ade02334ef45d94918037f9839184 431 SUPERFAMILY SSF53850 308 417 1.09E-31 T 23-04-2016 RD1_RS19275 aa2ade02334ef45d94918037f9839184 431 SUPERFAMILY SSF53850 9 149 1.09E-31 T 23-04-2016 RD1_RS19275 aa2ade02334ef45d94918037f9839184 431 SMART SM00062 33 422 0.0012 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD1_RS17590 fb2384ad77ee4913a690a4ad3406b24e 409 Pfam PF02563 Polysaccharide biosynthesis/export protein 29 95 5.1E-10 T 23-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 RD1_RS17590 fb2384ad77ee4913a690a4ad3406b24e 409 PANTHER PTHR33619 14 151 2.1E-14 T 23-04-2016 RD1_RS17590 fb2384ad77ee4913a690a4ad3406b24e 409 Gene3D G3DSA:3.10.560.10 372 402 6.5E-5 T 23-04-2016 RD1_RS17590 fb2384ad77ee4913a690a4ad3406b24e 409 Gene3D G3DSA:3.10.560.10 120 172 6.5E-5 T 23-04-2016 RD1_RS17590 fb2384ad77ee4913a690a4ad3406b24e 409 Gene3D G3DSA:3.30.1950.10 37 98 4.0E-6 T 23-04-2016 RD1_RS18800 64fae958b0993ed0dc147e6007870f7d 156 SUPERFAMILY SSF49785 7 155 1.57E-24 T 23-04-2016 IPR008979 Galactose-binding domain-like RD1_RS18800 64fae958b0993ed0dc147e6007870f7d 156 Pfam PF08547 Complex I intermediate-associated protein 30 (CIA30) 6 136 2.4E-22 T 23-04-2016 IPR013857 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 RD1_RS09045 063b192fab85b435269a113be6eb19b9 151 ProSitePatterns PS00519 AsnC-type HTH domain signature. 22 48 - T 23-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RD1_RS09045 063b192fab85b435269a113be6eb19b9 151 SUPERFAMILY SSF46785 3 64 1.28E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS09045 063b192fab85b435269a113be6eb19b9 151 Pfam PF01037 Lrp/AsnC ligand binding domain 72 143 1.6E-17 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS09045 063b192fab85b435269a113be6eb19b9 151 SUPERFAMILY SSF54909 64 144 4.29E-15 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS09045 063b192fab85b435269a113be6eb19b9 151 PANTHER PTHR30154:SF28 1 146 5.0E-33 T 23-04-2016 RD1_RS09045 063b192fab85b435269a113be6eb19b9 151 PANTHER PTHR30154 1 146 5.0E-33 T 23-04-2016 RD1_RS09045 063b192fab85b435269a113be6eb19b9 151 SMART SM00344 4 113 4.2E-24 T 23-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RD1_RS09045 063b192fab85b435269a113be6eb19b9 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 4.8E-7 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS09045 063b192fab85b435269a113be6eb19b9 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 4.8E-7 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS09045 063b192fab85b435269a113be6eb19b9 151 Gene3D G3DSA:1.10.10.10 1 53 5.5E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS09045 063b192fab85b435269a113be6eb19b9 151 Gene3D G3DSA:3.30.70.920 56 144 1.1E-20 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS09045 063b192fab85b435269a113be6eb19b9 151 Pfam PF13404 AsnC-type helix-turn-helix domain 4 45 5.3E-12 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS19255 b9996244c53d942871b1a4aea3be8f6f 338 Pfam PF04230 Polysaccharide pyruvyl transferase 11 277 9.1E-24 T 23-04-2016 IPR007345 Polysaccharide pyruvyl transferase RD1_RS00880 c0773f7b23c662e8d7c4d5b3d2fa1a9b 394 PANTHER PTHR30544 1 388 5.0E-162 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS00880 c0773f7b23c662e8d7c4d5b3d2fa1a9b 394 Pfam PF04055 Radical SAM superfamily 130 308 2.1E-20 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RD1_RS00880 c0773f7b23c662e8d7c4d5b3d2fa1a9b 394 SUPERFAMILY SSF102114 123 338 2.09E-14 T 23-04-2016 RD1_RS00880 c0773f7b23c662e8d7c4d5b3d2fa1a9b 394 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 22 377 71.444 T 23-04-2016 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS00880 c0773f7b23c662e8d7c4d5b3d2fa1a9b 394 PANTHER PTHR30544:SF5 1 388 5.0E-162 T 23-04-2016 RD1_RS00880 c0773f7b23c662e8d7c4d5b3d2fa1a9b 394 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 23 377 5.6E-118 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS00880 c0773f7b23c662e8d7c4d5b3d2fa1a9b 394 Gene3D G3DSA:3.20.20.70 127 357 4.9E-15 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS00880 c0773f7b23c662e8d7c4d5b3d2fa1a9b 394 PIRSF PIRSF006004 17 389 1.2E-143 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RD1_RS07260 e460a21434563c211ee4fe11f3bb6c67 163 PANTHER PTHR30154 1 156 1.2E-38 T 23-04-2016 RD1_RS07260 e460a21434563c211ee4fe11f3bb6c67 163 PANTHER PTHR30154:SF27 1 156 1.2E-38 T 23-04-2016 RD1_RS07260 e460a21434563c211ee4fe11f3bb6c67 163 Gene3D G3DSA:1.10.10.10 5 55 3.5E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07260 e460a21434563c211ee4fe11f3bb6c67 163 SUPERFAMILY SSF46785 4 64 2.35E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS12580 26732eda31f75c9349da4c4abbf3b9af 571 Gene3D G3DSA:3.90.76.10 64 142 4.9E-16 T 23-04-2016 RD1_RS12580 26732eda31f75c9349da4c4abbf3b9af 571 PIRSF PIRSF002741 4 567 1.9E-93 T 23-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RD1_RS12580 26732eda31f75c9349da4c4abbf3b9af 571 PANTHER PTHR30290:SF2 355 566 6.4E-149 T 23-04-2016 RD1_RS12580 26732eda31f75c9349da4c4abbf3b9af 571 PANTHER PTHR30290:SF2 8 327 6.4E-149 T 23-04-2016 RD1_RS12580 26732eda31f75c9349da4c4abbf3b9af 571 PANTHER PTHR30290 355 566 6.4E-149 T 23-04-2016 RD1_RS12580 26732eda31f75c9349da4c4abbf3b9af 571 PANTHER PTHR30290 8 327 6.4E-149 T 23-04-2016 RD1_RS12580 26732eda31f75c9349da4c4abbf3b9af 571 Gene3D G3DSA:3.10.105.10 293 535 2.8E-45 T 23-04-2016 RD1_RS12580 26732eda31f75c9349da4c4abbf3b9af 571 Gene3D G3DSA:3.40.190.10 143 292 1.7E-29 T 23-04-2016 RD1_RS12580 26732eda31f75c9349da4c4abbf3b9af 571 SUPERFAMILY SSF53850 20 567 1.24E-122 T 23-04-2016 RD1_RS12580 26732eda31f75c9349da4c4abbf3b9af 571 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 70 479 7.7E-75 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain RD1_RS16985 8a9e1b6660a9f11698e2513cdcffd90c 414 Gene3D G3DSA:2.70.160.11 235 353 6.6E-7 T 23-04-2016 RD1_RS16985 8a9e1b6660a9f11698e2513cdcffd90c 414 SUPERFAMILY SSF53335 77 350 8.61E-38 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS16985 8a9e1b6660a9f11698e2513cdcffd90c 414 Gene3D G3DSA:3.40.50.150 68 210 6.3E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS16985 8a9e1b6660a9f11698e2513cdcffd90c 414 PANTHER PTHR11006 77 359 4.8E-54 T 23-04-2016 IPR025799 Protein arginine N-methyltransferase GO:0006479|GO:0008168 RD1_RS16985 8a9e1b6660a9f11698e2513cdcffd90c 414 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 95 187 1.7E-9 T 23-04-2016 RD1_RS00235 18fd205b2eab529559f2729760c75f01 194 Gene3D G3DSA:3.40.30.10 7 81 1.1E-17 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS00235 18fd205b2eab529559f2729760c75f01 194 SUPERFAMILY SSF47616 77 191 1.11E-17 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS00235 18fd205b2eab529559f2729760c75f01 194 Pfam PF13417 Glutathione S-transferase, N-terminal domain 12 72 5.6E-11 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RD1_RS00235 18fd205b2eab529559f2729760c75f01 194 Pfam PF00043 Glutathione S-transferase, C-terminal domain 104 163 6.7E-5 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal RD1_RS00235 18fd205b2eab529559f2729760c75f01 194 PANTHER PTHR11260 10 191 1.0E-24 T 23-04-2016 RD1_RS00235 18fd205b2eab529559f2729760c75f01 194 SUPERFAMILY SSF52833 6 73 4.49E-16 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS00235 18fd205b2eab529559f2729760c75f01 194 Gene3D G3DSA:1.20.1050.10 82 193 5.4E-16 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS07055 cb73982af2c538fd0c6ae2722e6d9f05 305 Gene3D G3DSA:3.60.15.10 27 301 1.3E-44 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS07055 cb73982af2c538fd0c6ae2722e6d9f05 305 PANTHER PTHR23200:SF42 32 283 1.8E-41 T 23-04-2016 RD1_RS07055 cb73982af2c538fd0c6ae2722e6d9f05 305 SUPERFAMILY SSF56281 28 302 3.93E-38 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS07055 cb73982af2c538fd0c6ae2722e6d9f05 305 Pfam PF00753 Metallo-beta-lactamase superfamily 79 283 1.2E-19 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS07055 cb73982af2c538fd0c6ae2722e6d9f05 305 SMART SM00849 79 283 1.5E-16 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS07055 cb73982af2c538fd0c6ae2722e6d9f05 305 PANTHER PTHR23200 32 283 1.8E-41 T 23-04-2016 RD1_RS10380 e0d5e0d4ad0e2ad5d96980e9c839845c 308 SUPERFAMILY SSF56281 16 283 9.07E-50 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS10380 e0d5e0d4ad0e2ad5d96980e9c839845c 308 SMART SM00849 36 216 6.3E-21 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS10380 e0d5e0d4ad0e2ad5d96980e9c839845c 308 Pfam PF00753 Metallo-beta-lactamase superfamily 35 207 9.0E-12 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS10380 e0d5e0d4ad0e2ad5d96980e9c839845c 308 PANTHER PTHR23131 15 282 1.4E-53 T 23-04-2016 RD1_RS10380 e0d5e0d4ad0e2ad5d96980e9c839845c 308 PANTHER PTHR23131:SF4 15 282 1.4E-53 T 23-04-2016 RD1_RS10380 e0d5e0d4ad0e2ad5d96980e9c839845c 308 Gene3D G3DSA:3.60.15.10 8 242 3.4E-39 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS08990 9dabfb094c60a31634b231d79ae60190 313 Gene3D G3DSA:1.20.58.180 218 304 4.8E-33 T 23-04-2016 RD1_RS08990 9dabfb094c60a31634b231d79ae60190 313 SUPERFAMILY SSF55681 10 303 8.45E-119 T 23-04-2016 RD1_RS08990 9dabfb094c60a31634b231d79ae60190 313 Gene3D G3DSA:3.30.930.10 5 216 8.4E-93 T 23-04-2016 RD1_RS08990 9dabfb094c60a31634b231d79ae60190 313 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 11 303 1.1E-136 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS08990 9dabfb094c60a31634b231d79ae60190 313 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 9 305 56.063 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS08990 9dabfb094c60a31634b231d79ae60190 313 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 84 104 2.8E-53 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS08990 9dabfb094c60a31634b231d79ae60190 313 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 164 179 2.8E-53 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS08990 9dabfb094c60a31634b231d79ae60190 313 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 63 78 2.8E-53 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS08990 9dabfb094c60a31634b231d79ae60190 313 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 115 139 2.8E-53 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS08990 9dabfb094c60a31634b231d79ae60190 313 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 141 161 2.8E-53 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS08990 9dabfb094c60a31634b231d79ae60190 313 PANTHER PTHR30075 1 302 8.8E-187 T 23-04-2016 RD1_RS08990 9dabfb094c60a31634b231d79ae60190 313 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 10 302 8.8E-130 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RD1_RS14860 5331fe937e675990342f3c9eda6ff1a9 225 PANTHER PTHR19278 1 221 2.4E-45 T 23-04-2016 RD1_RS14860 5331fe937e675990342f3c9eda6ff1a9 225 SUPERFAMILY SSF53271 17 222 2.88E-46 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS14860 5331fe937e675990342f3c9eda6ff1a9 225 Gene3D G3DSA:3.40.50.2020 11 222 6.8E-50 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS14860 5331fe937e675990342f3c9eda6ff1a9 225 Pfam PF00156 Phosphoribosyl transferase domain 77 163 2.7E-11 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RD1_RS14860 5331fe937e675990342f3c9eda6ff1a9 225 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 19 186 3.0E-32 T 23-04-2016 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS14860 5331fe937e675990342f3c9eda6ff1a9 225 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 225 28.769 T 23-04-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS18735 f58979b0393b461aad430e358cc61071 325 PANTHER PTHR22911:SF70 11 315 4.2E-43 T 23-04-2016 RD1_RS18735 f58979b0393b461aad430e358cc61071 325 SUPERFAMILY SSF103481 49 146 4.71E-12 T 23-04-2016 RD1_RS18735 f58979b0393b461aad430e358cc61071 325 PANTHER PTHR22911 11 315 4.2E-43 T 23-04-2016 RD1_RS18735 f58979b0393b461aad430e358cc61071 325 Pfam PF00892 EamA-like transporter family 11 142 2.2E-12 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS18735 f58979b0393b461aad430e358cc61071 325 SUPERFAMILY SSF103481 221 311 9.42E-13 T 23-04-2016 RD1_RS13575 85f5d8955da6b239fe771fc914b84913 227 Gene3D G3DSA:1.10.287.950 161 218 2.7E-18 T 23-04-2016 RD1_RS13575 85f5d8955da6b239fe771fc914b84913 227 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 165 215 3.3E-15 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RD1_RS13575 85f5d8955da6b239fe771fc914b84913 227 PANTHER PTHR32089 172 214 2.5E-12 T 23-04-2016 RD1_RS13575 85f5d8955da6b239fe771fc914b84913 227 PANTHER PTHR32089:SF52 172 214 2.5E-12 T 23-04-2016 RD1_RS13575 85f5d8955da6b239fe771fc914b84913 227 SUPERFAMILY SSF58104 89 221 3.66E-20 T 23-04-2016 RD1_RS05265 70a7d7ee69129cee293adfcab63c1eaf 265 Gene3D G3DSA:3.30.420.10 102 258 1.1E-51 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS05265 70a7d7ee69129cee293adfcab63c1eaf 265 SUPERFAMILY SSF53098 101 260 1.9E-41 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS05265 70a7d7ee69129cee293adfcab63c1eaf 265 Pfam PF00665 Integrase core domain 107 221 3.2E-26 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS05265 70a7d7ee69129cee293adfcab63c1eaf 265 PANTHER PTHR32552:SF26 67 258 1.1E-64 T 23-04-2016 RD1_RS05265 70a7d7ee69129cee293adfcab63c1eaf 265 PANTHER PTHR32552 67 258 1.1E-64 T 23-04-2016 RD1_RS08515 70a7d7ee69129cee293adfcab63c1eaf 265 Gene3D G3DSA:3.30.420.10 102 258 1.1E-51 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS08515 70a7d7ee69129cee293adfcab63c1eaf 265 SUPERFAMILY SSF53098 101 260 1.9E-41 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS08515 70a7d7ee69129cee293adfcab63c1eaf 265 Pfam PF00665 Integrase core domain 107 221 3.2E-26 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS08515 70a7d7ee69129cee293adfcab63c1eaf 265 PANTHER PTHR32552:SF26 67 258 1.1E-64 T 23-04-2016 RD1_RS08515 70a7d7ee69129cee293adfcab63c1eaf 265 PANTHER PTHR32552 67 258 1.1E-64 T 23-04-2016 RD1_RS11435 70a7d7ee69129cee293adfcab63c1eaf 265 Gene3D G3DSA:3.30.420.10 102 258 1.1E-51 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS11435 70a7d7ee69129cee293adfcab63c1eaf 265 SUPERFAMILY SSF53098 101 260 1.9E-41 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS11435 70a7d7ee69129cee293adfcab63c1eaf 265 Pfam PF00665 Integrase core domain 107 221 3.2E-26 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS11435 70a7d7ee69129cee293adfcab63c1eaf 265 PANTHER PTHR32552:SF26 67 258 1.1E-64 T 23-04-2016 RD1_RS11435 70a7d7ee69129cee293adfcab63c1eaf 265 PANTHER PTHR32552 67 258 1.1E-64 T 23-04-2016 RD1_RS03980 213cf12f5bb31b24c9ce4bdda85dbe3d 326 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 315 2.5E-38 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS03980 213cf12f5bb31b24c9ce4bdda85dbe3d 326 PANTHER PTHR32196:SF21 6 317 4.3E-54 T 23-04-2016 RD1_RS03980 213cf12f5bb31b24c9ce4bdda85dbe3d 326 PANTHER PTHR32196 6 317 4.3E-54 T 23-04-2016 RD1_RS08095 1d8f700246345523529ea8a113c4152d 199 SUPERFAMILY SSF109604 5 137 2.32E-32 T 23-04-2016 RD1_RS08095 1d8f700246345523529ea8a113c4152d 199 PANTHER PTHR40202:SF1 18 191 9.2E-18 T 23-04-2016 RD1_RS08095 1d8f700246345523529ea8a113c4152d 199 Pfam PF05153 Myo-inositol oxygenase 16 94 7.5E-6 T 23-04-2016 IPR007828 Inositol oxygenase GO:0005506|GO:0005737|GO:0019310|GO:0050113|GO:0055114 KEGG: 00053+1.13.99.1|KEGG: 00562+1.13.99.1|MetaCyc: PWY-4841|UniPathway: UPA00111 RD1_RS08095 1d8f700246345523529ea8a113c4152d 199 PANTHER PTHR40202 18 191 9.2E-18 T 23-04-2016 RD1_RS18155 9ad7391ec7ccb9b7ccfc105090c80844 248 PANTHER PTHR26402 173 240 1.3E-16 T 23-04-2016 RD1_RS18155 9ad7391ec7ccb9b7ccfc105090c80844 248 Gene3D G3DSA:1.10.10.10 182 240 5.7E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18155 9ad7391ec7ccb9b7ccfc105090c80844 248 SUPERFAMILY SSF46894 166 240 6.46E-20 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RD1_RS18155 9ad7391ec7ccb9b7ccfc105090c80844 248 Pfam PF00196 Bacterial regulatory proteins, luxR family 179 231 8.1E-18 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS18155 9ad7391ec7ccb9b7ccfc105090c80844 248 Pfam PF03472 Autoinducer binding domain 37 165 1.7E-21 T 23-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RD1_RS18155 9ad7391ec7ccb9b7ccfc105090c80844 248 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 194 2.6E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS18155 9ad7391ec7ccb9b7ccfc105090c80844 248 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 194 210 2.6E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS18155 9ad7391ec7ccb9b7ccfc105090c80844 248 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 210 222 2.6E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS18155 9ad7391ec7ccb9b7ccfc105090c80844 248 SMART SM00421 177 234 5.3E-21 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS18155 9ad7391ec7ccb9b7ccfc105090c80844 248 ProSitePatterns PS00622 LuxR-type HTH domain signature. 194 221 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS18155 9ad7391ec7ccb9b7ccfc105090c80844 248 Gene3D G3DSA:3.30.450.80 6 181 1.6E-25 T 23-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RD1_RS18155 9ad7391ec7ccb9b7ccfc105090c80844 248 SUPERFAMILY SSF75516 5 172 2.75E-33 T 23-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RD1_RS18155 9ad7391ec7ccb9b7ccfc105090c80844 248 PANTHER PTHR26402:SF151 173 240 1.3E-16 T 23-04-2016 RD1_RS12795 418d799bfdd496a094a69832e7fc1a93 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 2.2E-12 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS12795 418d799bfdd496a094a69832e7fc1a93 207 Pfam PF13305 WHG domain 90 172 1.4E-10 T 23-04-2016 IPR025996 WHG domain RD1_RS12795 418d799bfdd496a094a69832e7fc1a93 207 SUPERFAMILY SSF48498 83 198 4.22E-19 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RD1_RS12795 418d799bfdd496a094a69832e7fc1a93 207 Gene3D G3DSA:1.10.357.10 61 198 9.1E-29 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RD1_RS12795 418d799bfdd496a094a69832e7fc1a93 207 Gene3D G3DSA:1.10.10.60 2 60 2.3E-20 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS12795 418d799bfdd496a094a69832e7fc1a93 207 PANTHER PTHR30328:SF6 1 199 4.7E-34 T 23-04-2016 RD1_RS12795 418d799bfdd496a094a69832e7fc1a93 207 SUPERFAMILY SSF46689 3 74 2.08E-17 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS12795 418d799bfdd496a094a69832e7fc1a93 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 5.1E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS12795 418d799bfdd496a094a69832e7fc1a93 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 5.1E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS12795 418d799bfdd496a094a69832e7fc1a93 207 PANTHER PTHR30328 1 199 4.7E-34 T 23-04-2016 RD1_RS01470 8291511c89372705f39b6515676fd126 264 Gene3D G3DSA:3.90.1720.10 133 240 2.7E-24 T 23-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RD1_RS01470 8291511c89372705f39b6515676fd126 264 SUPERFAMILY SSF54001 129 251 1.08E-29 T 23-04-2016 RD1_RS01470 8291511c89372705f39b6515676fd126 264 Pfam PF00877 NlpC/P60 family 152 234 2.0E-14 T 23-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RD1_RS05070 3f2bc2717a1a373e386ba42a407d5afb 230 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 36 50 - T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RD1_RS05070 3f2bc2717a1a373e386ba42a407d5afb 230 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 138 160 - T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RD1_RS05070 3f2bc2717a1a373e386ba42a407d5afb 230 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 8 205 3.1E-84 T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RD1_RS05070 3f2bc2717a1a373e386ba42a407d5afb 230 PIRSF PIRSF001461 3 228 3.4E-88 T 23-04-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RD1_RS05070 3f2bc2717a1a373e386ba42a407d5afb 230 Pfam PF00834 Ribulose-phosphate 3 epimerase family 8 203 6.5E-82 T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RD1_RS05070 3f2bc2717a1a373e386ba42a407d5afb 230 PANTHER PTHR11749 5 225 1.0E-116 T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RD1_RS05070 3f2bc2717a1a373e386ba42a407d5afb 230 Gene3D G3DSA:3.20.20.70 6 225 1.5E-93 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS05070 3f2bc2717a1a373e386ba42a407d5afb 230 SUPERFAMILY SSF51366 7 208 1.77E-71 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RD1_RS16380 12e4abd5252b15941e49a858e10bbdb1 253 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 251 46.554 T 23-04-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 RD1_RS16380 12e4abd5252b15941e49a858e10bbdb1 253 SUPERFAMILY SSF51366 1 251 1.26E-82 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RD1_RS16380 12e4abd5252b15941e49a858e10bbdb1 253 Pfam PF00977 Histidine biosynthesis protein 5 235 2.6E-87 T 23-04-2016 IPR006062 Histidine biosynthesis GO:0000105 RD1_RS16380 12e4abd5252b15941e49a858e10bbdb1 253 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 251 2.6E-105 T 23-04-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 RD1_RS16380 12e4abd5252b15941e49a858e10bbdb1 253 Gene3D G3DSA:3.20.20.70 5 252 1.2E-103 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS16380 12e4abd5252b15941e49a858e10bbdb1 253 PANTHER PTHR21235 1 253 1.1E-117 T 23-04-2016 RD1_RS16380 12e4abd5252b15941e49a858e10bbdb1 253 PANTHER PTHR21235:SF2 1 253 1.1E-117 T 23-04-2016 RD1_RS18860 51644b1c517a871a93a70e880b00d968 357 SUPERFAMILY SSF50331 243 348 1.21E-14 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS18860 51644b1c517a871a93a70e880b00d968 357 Gene3D G3DSA:3.40.50.300 4 240 1.2E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18860 51644b1c517a871a93a70e880b00d968 357 SUPERFAMILY SSF52540 4 251 2.89E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18860 51644b1c517a871a93a70e880b00d968 357 PANTHER PTHR24220 5 333 1.3E-95 T 23-04-2016 RD1_RS18860 51644b1c517a871a93a70e880b00d968 357 Pfam PF00005 ABC transporter 25 168 6.6E-23 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS18860 51644b1c517a871a93a70e880b00d968 357 SMART SM00382 34 218 2.4E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS18860 51644b1c517a871a93a70e880b00d968 357 Pfam PF08402 TOBE domain 280 344 1.9E-4 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS18860 51644b1c517a871a93a70e880b00d968 357 PANTHER PTHR24220:SF151 5 333 1.3E-95 T 23-04-2016 RD1_RS18860 51644b1c517a871a93a70e880b00d968 357 Gene3D G3DSA:2.40.50.140 283 338 4.0E-4 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS12340 0d4780fe9ea232c64fa315810cbcc19e 202 PANTHER PTHR19136 3 200 2.2E-28 T 23-04-2016 RD1_RS12340 0d4780fe9ea232c64fa315810cbcc19e 202 Pfam PF12804 MobA-like NTP transferase domain 10 173 2.9E-29 T 23-04-2016 IPR025877 MobA-like NTP transferase RD1_RS12340 0d4780fe9ea232c64fa315810cbcc19e 202 PANTHER PTHR19136:SF78 3 200 2.2E-28 T 23-04-2016 RD1_RS12340 0d4780fe9ea232c64fa315810cbcc19e 202 Gene3D G3DSA:3.90.550.10 5 200 6.5E-27 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS12340 0d4780fe9ea232c64fa315810cbcc19e 202 SUPERFAMILY SSF53448 7 195 1.1E-23 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS14290 7e6d61ffb514f9340d0099ce92d26f2e 322 PANTHER PTHR10091 1 315 2.1E-98 T 23-04-2016 RD1_RS14290 7e6d61ffb514f9340d0099ce92d26f2e 322 Pfam PF01263 Aldose 1-epimerase 2 311 3.9E-68 T 23-04-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 RD1_RS14290 7e6d61ffb514f9340d0099ce92d26f2e 322 SUPERFAMILY SSF74650 3 312 1.7E-86 T 23-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 RD1_RS14290 7e6d61ffb514f9340d0099ce92d26f2e 322 PANTHER PTHR10091:SF0 1 315 2.1E-98 T 23-04-2016 RD1_RS14290 7e6d61ffb514f9340d0099ce92d26f2e 322 Gene3D G3DSA:2.70.98.10 2 312 4.0E-86 T 23-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 RD1_RS17840 1bc2892d207ee9a006e09233434c11c1 389 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 274 280 - T 23-04-2016 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 RD1_RS17840 1bc2892d207ee9a006e09233434c11c1 389 Gene3D G3DSA:3.20.20.70 4 377 8.1E-132 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS17840 1bc2892d207ee9a006e09233434c11c1 389 PIRSF PIRSF000138 1 381 1.2E-120 T 23-04-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 RD1_RS17840 1bc2892d207ee9a006e09233434c11c1 389 Pfam PF01070 FMN-dependent dehydrogenase 15 375 4.0E-126 T 23-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 RD1_RS17840 1bc2892d207ee9a006e09233434c11c1 389 PANTHER PTHR10578 1 377 1.2E-197 T 23-04-2016 RD1_RS17840 1bc2892d207ee9a006e09233434c11c1 389 SUPERFAMILY SSF51395 4 378 7.33E-101 T 23-04-2016 RD1_RS17840 1bc2892d207ee9a006e09233434c11c1 389 PANTHER PTHR10578:SF76 1 377 1.2E-197 T 23-04-2016 RD1_RS16335 c70a83ffbda7e5060f8ab7adeac4f06f 120 PANTHER PTHR34583 1 94 1.7E-37 T 23-04-2016 RD1_RS16335 c70a83ffbda7e5060f8ab7adeac4f06f 120 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 106 1.3E-19 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RD1_RS16335 c70a83ffbda7e5060f8ab7adeac4f06f 120 PANTHER PTHR34583:SF1 1 94 1.7E-37 T 23-04-2016 RD1_RS18460 76557c9ccd146dfcf11558649b703f75 158 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 147 6.5E-19 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS18460 76557c9ccd146dfcf11558649b703f75 158 PANTHER PTHR30173 5 157 1.7E-28 T 23-04-2016 RD1_RS18460 76557c9ccd146dfcf11558649b703f75 158 Gene3D G3DSA:1.10.10.10 93 147 2.0E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18460 76557c9ccd146dfcf11558649b703f75 158 Pfam PF08281 Sigma-70, region 4 96 146 2.7E-13 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS18460 76557c9ccd146dfcf11558649b703f75 158 Gene3D G3DSA:1.10.1740.10 5 66 2.8E-15 T 23-04-2016 RD1_RS18460 76557c9ccd146dfcf11558649b703f75 158 SUPERFAMILY SSF88946 5 78 4.71E-13 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS18460 76557c9ccd146dfcf11558649b703f75 158 Pfam PF04542 Sigma-70 region 2 6 64 9.3E-10 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS18460 76557c9ccd146dfcf11558649b703f75 158 SUPERFAMILY SSF88659 93 148 5.89E-14 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS03255 36999ab22dd54cb8ffe8cead3564f59e 275 PANTHER PTHR24220:SF458 14 274 1.1E-123 T 23-04-2016 RD1_RS03255 36999ab22dd54cb8ffe8cead3564f59e 275 SUPERFAMILY SSF52540 11 252 3.11E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03255 36999ab22dd54cb8ffe8cead3564f59e 275 Pfam PF00005 ABC transporter 29 180 7.6E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS03255 36999ab22dd54cb8ffe8cead3564f59e 275 Gene3D G3DSA:3.40.50.300 10 250 1.3E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03255 36999ab22dd54cb8ffe8cead3564f59e 275 SMART SM00382 38 248 1.3E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS03255 36999ab22dd54cb8ffe8cead3564f59e 275 PANTHER PTHR24220 14 274 1.1E-123 T 23-04-2016 RD1_RS18210 8d0575b6a9f80a6a4f14466214958be7 436 Gene3D G3DSA:1.20.970.10 3 68 7.6E-17 T 23-04-2016 RD1_RS18210 8d0575b6a9f80a6a4f14466214958be7 436 Pfam PF02885 Glycosyl transferase family, helical bundle domain 7 67 1.7E-13 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RD1_RS18210 8d0575b6a9f80a6a4f14466214958be7 436 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 110 125 - T 23-04-2016 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 RD1_RS18210 8d0575b6a9f80a6a4f14466214958be7 436 PIRSF PIRSF000478 1 436 2.8E-144 T 23-04-2016 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 RD1_RS18210 8d0575b6a9f80a6a4f14466214958be7 436 SUPERFAMILY SSF47648 2 70 5.1E-15 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RD1_RS18210 8d0575b6a9f80a6a4f14466214958be7 436 SMART SM00941 346 420 2.5E-26 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RD1_RS18210 8d0575b6a9f80a6a4f14466214958be7 436 PANTHER PTHR10515:SF0 12 435 2.0E-164 T 23-04-2016 RD1_RS18210 8d0575b6a9f80a6a4f14466214958be7 436 PANTHER PTHR10515 12 435 2.0E-164 T 23-04-2016 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 RD1_RS18210 8d0575b6a9f80a6a4f14466214958be7 436 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 8 419 2.2E-138 T 23-04-2016 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|UniPathway: UPA00578 RD1_RS18210 8d0575b6a9f80a6a4f14466214958be7 436 SUPERFAMILY SSF54680 333 433 1.83E-25 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RD1_RS18210 8d0575b6a9f80a6a4f14466214958be7 436 Gene3D G3DSA:3.90.1170.30 335 424 8.7E-28 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RD1_RS18210 8d0575b6a9f80a6a4f14466214958be7 436 Pfam PF00591 Glycosyl transferase family, a/b domain 77 305 1.0E-35 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RD1_RS18210 8d0575b6a9f80a6a4f14466214958be7 436 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 347 418 7.7E-21 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RD1_RS18210 8d0575b6a9f80a6a4f14466214958be7 436 SUPERFAMILY SSF52418 70 330 2.09E-85 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RD1_RS18210 8d0575b6a9f80a6a4f14466214958be7 436 Gene3D G3DSA:3.40.1030.10 73 334 9.4E-104 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RD1_RS19025 f7179e73b93dbefeccef5f61277bc059 331 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 19 196 2.1E-45 T 23-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RD1_RS19025 f7179e73b93dbefeccef5f61277bc059 331 SUPERFAMILY SSF51735 17 198 4.07E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19025 f7179e73b93dbefeccef5f61277bc059 331 Gene3D G3DSA:1.10.1040.10 203 274 4.7E-12 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS19025 f7179e73b93dbefeccef5f61277bc059 331 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 201 266 1.1E-16 T 23-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RD1_RS19025 f7179e73b93dbefeccef5f61277bc059 331 Gene3D G3DSA:3.40.50.720 13 202 8.4E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19025 f7179e73b93dbefeccef5f61277bc059 331 PANTHER PTHR23309 17 267 3.4E-100 T 23-04-2016 RD1_RS19025 f7179e73b93dbefeccef5f61277bc059 331 PANTHER PTHR23309:SF17 17 267 3.4E-100 T 23-04-2016 RD1_RS19025 f7179e73b93dbefeccef5f61277bc059 331 SUPERFAMILY SSF48179 201 282 1.45E-14 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS19025 f7179e73b93dbefeccef5f61277bc059 331 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 198 222 - T 23-04-2016 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RD1_RS09475 bb178b43c63630af7b706676857e78f8 165 Pfam PF11157 Protein of unknown function (DUF2937) 4 159 8.7E-39 T 23-04-2016 IPR022584 Protein of unknown function DUF2937 RD1_RS03820 bea1e6156d48451fe08173b43d9a529a 128 Gene3D G3DSA:3.10.450.50 12 114 1.1E-23 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS03820 bea1e6156d48451fe08173b43d9a529a 128 SUPERFAMILY SSF54427 10 115 5.79E-28 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS03820 bea1e6156d48451fe08173b43d9a529a 128 Pfam PF12680 SnoaL-like domain 13 113 4.0E-23 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 SMART SM00958 230 348 1.4E-72 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 SUPERFAMILY SSF52540 407 613 4.14E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 Pfam PF07517 SecA DEAD-like domain 9 391 2.2E-124 T 23-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 SUPERFAMILY SSF52540 358 405 4.87E-78 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 PANTHER PTHR30612 545 904 0.0 T 23-04-2016 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 PANTHER PTHR30612 1 510 0.0 T 23-04-2016 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 SUPERFAMILY SSF52540 9 230 4.87E-78 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 Pfam PF00271 Helicase conserved C-terminal domain 424 510 2.7E-4 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 Hamap MF_01382 Protein translocase subunit SecA [secA]. 7 826 19.786 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 SMART SM00957 8 392 4.9E-275 T 23-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 30 811 0.0 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 Pfam PF07516 SecA Wing and Scaffold domain 612 823 1.9E-64 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 Gene3D G3DSA:3.40.50.300 407 613 1.9E-88 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 SUPERFAMILY SSF81767 229 358 1.57E-42 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 Gene3D G3DSA:1.10.3060.10 643 824 8.6E-57 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 Gene3D G3DSA:3.40.50.300 359 406 1.1E-115 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 Gene3D G3DSA:3.40.50.300 8 230 1.1E-115 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 SUPERFAMILY SSF81886 880 892 1.96E-79 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 SUPERFAMILY SSF81886 615 834 1.96E-79 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 PRINTS PR00906 SecA protein signature 65 89 9.5E-67 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 PRINTS PR00906 SecA protein signature 329 351 9.5E-67 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 PRINTS PR00906 SecA protein signature 403 416 9.5E-67 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 PRINTS PR00906 SecA protein signature 366 383 9.5E-67 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 PRINTS PR00906 SecA protein signature 103 117 9.5E-67 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 PRINTS PR00906 SecA protein signature 172 192 9.5E-67 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 PRINTS PR00906 SecA protein signature 119 129 9.5E-67 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 Pfam PF01043 SecA preprotein cross-linking domain 234 348 2.9E-37 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 Pfam PF02810 SEC-C motif 884 902 8.1E-10 T 23-04-2016 IPR004027 SEC-C motif RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 Gene3D G3DSA:3.90.1440.10 232 358 7.2E-45 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RD1_RS01780 b09a42633fbe86f7e4c28b4a446f699d 904 ProSitePatterns PS01312 SecA family signature. 490 505 - T 23-04-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 RD1_RS17145 3f6d074f34f43671ac0b74d8b8ead2d0 345 SMART SM00382 28 211 3.1E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS17145 3f6d074f34f43671ac0b74d8b8ead2d0 345 Pfam PF00005 ABC transporter 20 161 7.2E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS17145 3f6d074f34f43671ac0b74d8b8ead2d0 345 Gene3D G3DSA:2.40.50.140 274 329 2.9E-14 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS17145 3f6d074f34f43671ac0b74d8b8ead2d0 345 PANTHER PTHR24220 5 299 4.0E-159 T 23-04-2016 RD1_RS17145 3f6d074f34f43671ac0b74d8b8ead2d0 345 Gene3D G3DSA:3.40.50.300 4 234 1.8E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17145 3f6d074f34f43671ac0b74d8b8ead2d0 345 SUPERFAMILY SSF52540 4 242 1.22E-86 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17145 3f6d074f34f43671ac0b74d8b8ead2d0 345 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS17145 3f6d074f34f43671ac0b74d8b8ead2d0 345 PANTHER PTHR24220:SF151 5 299 4.0E-159 T 23-04-2016 RD1_RS17145 3f6d074f34f43671ac0b74d8b8ead2d0 345 Gene3D G3DSA:2.40.50.100 239 273 4.4E-5 T 23-04-2016 RD1_RS17145 3f6d074f34f43671ac0b74d8b8ead2d0 345 Gene3D G3DSA:2.40.50.100 330 343 4.4E-5 T 23-04-2016 RD1_RS17145 3f6d074f34f43671ac0b74d8b8ead2d0 345 Pfam PF08402 TOBE domain 269 336 1.4E-9 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS17145 3f6d074f34f43671ac0b74d8b8ead2d0 345 SUPERFAMILY SSF50331 237 344 1.09E-27 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 PANTHER PTHR12383 195 258 1.8E-63 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 PANTHER PTHR12383 99 165 1.8E-63 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 PANTHER PTHR12383 4 65 1.8E-63 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 Gene3D G3DSA:2.10.109.10 29 129 4.9E-42 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 Gene3D G3DSA:2.10.109.10 213 268 4.9E-42 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 213 232 5.4E-22 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 119 131 5.4E-22 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 33 49 5.4E-22 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 ProSitePatterns PS00760 Signal peptidases I lysine active site. 121 133 - T 23-04-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 SUPERFAMILY SSF51306 31 278 3.19E-57 T 23-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 17 258 1.9E-42 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 Pfam PF00717 Peptidase S24-like 39 142 3.6E-19 T 23-04-2016 IPR019759 Peptidase S24/S26A/S26B RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 ProSitePatterns PS00761 Signal peptidases I signature 3. 218 231 - T 23-04-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 PANTHER PTHR12383:SF27 195 258 1.8E-63 T 23-04-2016 RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 PANTHER PTHR12383:SF27 99 165 1.8E-63 T 23-04-2016 RD1_RS06305 840987222c0192d0a40c1f4eac606584 280 PANTHER PTHR12383:SF27 4 65 1.8E-63 T 23-04-2016 RD1_RS03670 6038c925fb1dbe489365f38c98efe7fd 465 SUPERFAMILY SSF52402 17 221 1.47E-25 T 23-04-2016 RD1_RS03670 6038c925fb1dbe489365f38c98efe7fd 465 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 36 220 7.1E-10 T 23-04-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 RD1_RS03670 6038c925fb1dbe489365f38c98efe7fd 465 PANTHER PTHR23293:SF6 252 316 1.0E-21 T 23-04-2016 RD1_RS03670 6038c925fb1dbe489365f38c98efe7fd 465 PANTHER PTHR23293 252 316 1.0E-21 T 23-04-2016 RD1_RS03670 6038c925fb1dbe489365f38c98efe7fd 465 PANTHER PTHR23293:SF6 21 234 1.0E-21 T 23-04-2016 RD1_RS03670 6038c925fb1dbe489365f38c98efe7fd 465 Gene3D G3DSA:3.40.50.620 21 221 1.1E-23 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS03670 6038c925fb1dbe489365f38c98efe7fd 465 PANTHER PTHR23293 21 234 1.0E-21 T 23-04-2016 RD1_RS03670 6038c925fb1dbe489365f38c98efe7fd 465 TIGRFAM TIGR03183 DNA_S_dndC: putative sulfurtransferase DndC 21 455 2.4E-171 T 23-04-2016 IPR017598 Sulphur transferase DndC, putative RD1_RS08425 779b9dbd7c3e8009e640d26d1d450c1a 170 SMART SM01058 8 118 1.2E-34 T 23-04-2016 IPR003711 CarD-like/TRCF domain RD1_RS08425 779b9dbd7c3e8009e640d26d1d450c1a 170 PANTHER PTHR38447 1 166 5.8E-48 T 23-04-2016 RD1_RS08425 779b9dbd7c3e8009e640d26d1d450c1a 170 Pfam PF02559 CarD-like/TRCF domain 9 116 3.4E-14 T 23-04-2016 IPR003711 CarD-like/TRCF domain RD1_RS08425 779b9dbd7c3e8009e640d26d1d450c1a 170 SUPERFAMILY SSF141259 6 73 2.88E-16 T 23-04-2016 IPR003711 CarD-like/TRCF domain RD1_RS09835 50c0c3dec77f7067dc151edeca864f1e 350 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 250 303 1.7E-5 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS09835 50c0c3dec77f7067dc151edeca864f1e 350 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 28 132 2.0E-9 T 23-04-2016 IPR000014 PAS domain RD1_RS09835 50c0c3dec77f7067dc151edeca864f1e 350 Gene3D G3DSA:3.30.565.10 205 303 9.9E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS09835 50c0c3dec77f7067dc151edeca864f1e 350 SUPERFAMILY SSF55785 30 132 1.16E-20 T 23-04-2016 IPR000014 PAS domain RD1_RS09835 50c0c3dec77f7067dc151edeca864f1e 350 SUPERFAMILY SSF55874 231 343 5.24E-13 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS09835 50c0c3dec77f7067dc151edeca864f1e 350 Gene3D G3DSA:3.30.450.20 32 133 4.7E-28 T 23-04-2016 RD1_RS09835 50c0c3dec77f7067dc151edeca864f1e 350 PANTHER PTHR24351 35 143 1.1E-38 T 23-04-2016 RD1_RS09835 50c0c3dec77f7067dc151edeca864f1e 350 SMART SM00387 247 346 1.2E-7 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS09835 50c0c3dec77f7067dc151edeca864f1e 350 Pfam PF13426 PAS domain 33 134 1.5E-17 T 23-04-2016 IPR000014 PAS domain RD1_RS09165 23b75a3ec76d6a5eafa17e16d6656e73 663 PANTHER PTHR11731:SF130 18 170 4.8E-103 T 23-04-2016 RD1_RS09165 23b75a3ec76d6a5eafa17e16d6656e73 663 PANTHER PTHR11731:SF130 211 307 4.8E-103 T 23-04-2016 RD1_RS09165 23b75a3ec76d6a5eafa17e16d6656e73 663 SUPERFAMILY SSF53474 7 324 1.71E-67 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS09165 23b75a3ec76d6a5eafa17e16d6656e73 663 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 301 523 2.4E-55 T 23-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RD1_RS09165 23b75a3ec76d6a5eafa17e16d6656e73 663 PANTHER PTHR11731 18 170 4.8E-103 T 23-04-2016 RD1_RS09165 23b75a3ec76d6a5eafa17e16d6656e73 663 PANTHER PTHR11731 211 307 4.8E-103 T 23-04-2016 RD1_RS09165 23b75a3ec76d6a5eafa17e16d6656e73 663 SMART SM00939 288 541 7.6E-78 T 23-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RD1_RS09165 23b75a3ec76d6a5eafa17e16d6656e73 663 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 22 500 3.8E-67 T 23-04-2016 IPR005674 CocE/Serine esterase GO:0016787 RD1_RS09165 23b75a3ec76d6a5eafa17e16d6656e73 663 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 22 271 1.0E-62 T 23-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RD1_RS09165 23b75a3ec76d6a5eafa17e16d6656e73 663 Gene3D G3DSA:2.60.120.260 342 528 6.5E-51 T 23-04-2016 IPR008979 Galactose-binding domain-like RD1_RS09165 23b75a3ec76d6a5eafa17e16d6656e73 663 SUPERFAMILY SSF49785 288 338 1.08E-49 T 23-04-2016 IPR008979 Galactose-binding domain-like RD1_RS09165 23b75a3ec76d6a5eafa17e16d6656e73 663 SUPERFAMILY SSF49785 368 521 1.08E-49 T 23-04-2016 IPR008979 Galactose-binding domain-like RD1_RS09165 23b75a3ec76d6a5eafa17e16d6656e73 663 Gene3D G3DSA:3.40.50.1820 7 158 4.1E-71 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS09165 23b75a3ec76d6a5eafa17e16d6656e73 663 Gene3D G3DSA:3.40.50.1820 216 324 4.1E-71 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS01050 b2e5089b712205bc6b18c49213a57609 201 Gene3D G3DSA:3.20.19.10 1 191 4.6E-50 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RD1_RS01050 b2e5089b712205bc6b18c49213a57609 201 SUPERFAMILY SSF52016 1 192 1.28E-61 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RD1_RS01050 b2e5089b712205bc6b18c49213a57609 201 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 184 2.0E-79 T 23-04-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS01050 b2e5089b712205bc6b18c49213a57609 201 PANTHER PTHR11670 1 199 2.1E-100 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS01050 b2e5089b712205bc6b18c49213a57609 201 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 201 41.766 T 23-04-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS01050 b2e5089b712205bc6b18c49213a57609 201 PANTHER PTHR11670:SF38 1 199 2.1E-100 T 23-04-2016 RD1_RS01050 b2e5089b712205bc6b18c49213a57609 201 Pfam PF00694 Aconitase C-terminal domain 1 123 5.2E-39 T 23-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS15640 2f51f3217bc2af18cf18684e2b879e75 689 SUPERFAMILY SSF63882 293 461 1.31E-39 T 23-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS15640 2f51f3217bc2af18cf18684e2b879e75 689 Gene3D G3DSA:2.40.340.10 617 685 2.8E-15 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS15640 2f51f3217bc2af18cf18684e2b879e75 689 SUPERFAMILY SSF53218 464 607 3.8E-42 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS15640 2f51f3217bc2af18cf18684e2b879e75 689 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 464 600 3.0E-30 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS15640 2f51f3217bc2af18cf18684e2b879e75 689 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 540 573 - T 23-04-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 UniPathway: UPA00344 RD1_RS15640 2f51f3217bc2af18cf18684e2b879e75 689 Pfam PF00994 Probable molybdopterin binding domain 467 603 1.7E-26 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS15640 2f51f3217bc2af18cf18684e2b879e75 689 SMART SM00852 467 604 1.7E-39 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS15640 2f51f3217bc2af18cf18684e2b879e75 689 Gene3D G3DSA:3.90.105.10 418 449 1.7E-14 T 23-04-2016 RD1_RS15640 2f51f3217bc2af18cf18684e2b879e75 689 Gene3D G3DSA:2.170.190.11 337 417 8.8E-20 T 23-04-2016 RD1_RS15640 2f51f3217bc2af18cf18684e2b879e75 689 Gene3D G3DSA:3.40.980.10 450 614 4.8E-57 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS15640 2f51f3217bc2af18cf18684e2b879e75 689 PANTHER PTHR10192 294 687 1.2E-115 T 23-04-2016 RD1_RS15640 2f51f3217bc2af18cf18684e2b879e75 689 Pfam PF03453 MoeA N-terminal region (domain I and II) 295 454 5.7E-27 T 23-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS15640 2f51f3217bc2af18cf18684e2b879e75 689 SUPERFAMILY SSF63867 614 686 3.79E-16 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS15640 2f51f3217bc2af18cf18684e2b879e75 689 Pfam PF03454 MoeA C-terminal region (domain IV) 618 684 1.2E-12 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS00350 033ef2352bd227c48b57881f854e474b 693 Pfam PF02470 MlaD protein 46 105 1.2E-7 T 23-04-2016 IPR003399 Mce/MlaD RD1_RS00350 033ef2352bd227c48b57881f854e474b 693 Pfam PF02470 MlaD protein 302 394 1.2E-5 T 23-04-2016 IPR003399 Mce/MlaD RD1_RS00350 033ef2352bd227c48b57881f854e474b 693 PANTHER PTHR30462:SF0 1 257 1.5E-52 T 23-04-2016 RD1_RS00350 033ef2352bd227c48b57881f854e474b 693 PANTHER PTHR30462 1 257 1.5E-52 T 23-04-2016 RD1_RS08800 867ec67f1d63953b07d6e472f8cf7597 263 PANTHER PTHR37426 2 248 1.2E-72 T 23-04-2016 RD1_RS08800 867ec67f1d63953b07d6e472f8cf7597 263 Gene3D G3DSA:3.40.50.150 1 252 1.8E-84 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS08800 867ec67f1d63953b07d6e472f8cf7597 263 PANTHER PTHR37426:SF1 2 248 1.2E-72 T 23-04-2016 RD1_RS08800 867ec67f1d63953b07d6e472f8cf7597 263 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 261 35.356 T 23-04-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 RD1_RS08800 867ec67f1d63953b07d6e472f8cf7597 263 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 252 9.0E-49 T 23-04-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 RD1_RS08800 867ec67f1d63953b07d6e472f8cf7597 263 SUPERFAMILY SSF53335 9 255 2.44E-79 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS05145 e159b36f2a707c0b036942604aba059a 377 Pfam PF13406 Transglycosylase SLT domain 45 258 6.2E-82 T 23-04-2016 IPR031304 Transglycosylase SLT domain 2 RD1_RS05145 e159b36f2a707c0b036942604aba059a 377 Pfam PF13406 Transglycosylase SLT domain 264 300 2.5E-8 T 23-04-2016 IPR031304 Transglycosylase SLT domain 2 RD1_RS05145 e159b36f2a707c0b036942604aba059a 377 Pfam PF01471 Putative peptidoglycan binding domain 321 376 7.6E-12 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS05145 e159b36f2a707c0b036942604aba059a 377 PANTHER PTHR30163:SF2 43 377 2.9E-115 T 23-04-2016 RD1_RS05145 e159b36f2a707c0b036942604aba059a 377 Gene3D G3DSA:1.10.530.10 263 305 9.7E-12 T 23-04-2016 RD1_RS05145 e159b36f2a707c0b036942604aba059a 377 Gene3D G3DSA:1.10.530.10 88 145 2.9E-29 T 23-04-2016 RD1_RS05145 e159b36f2a707c0b036942604aba059a 377 Gene3D G3DSA:1.10.530.10 227 259 2.9E-29 T 23-04-2016 RD1_RS05145 e159b36f2a707c0b036942604aba059a 377 Gene3D G3DSA:1.10.101.10 315 376 6.4E-14 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS05145 e159b36f2a707c0b036942604aba059a 377 SUPERFAMILY SSF47090 307 376 2.35E-17 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS05145 e159b36f2a707c0b036942604aba059a 377 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 45 257 4.7E-78 T 23-04-2016 IPR011970 Lytic murein transglycosylase RD1_RS05145 e159b36f2a707c0b036942604aba059a 377 SUPERFAMILY SSF53955 41 307 1.01E-86 T 23-04-2016 IPR023346 Lysozyme-like domain RD1_RS05145 e159b36f2a707c0b036942604aba059a 377 PANTHER PTHR30163 43 377 2.9E-115 T 23-04-2016 IPR011757 Lytic transglycosylase MltB RD1_RS03385 65e9730505069f7dbc136c1dd2e9442b 431 PANTHER PTHR33362:SF3 9 427 1.6E-107 T 23-04-2016 RD1_RS03385 65e9730505069f7dbc136c1dd2e9442b 431 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 19 424 2.0E-116 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS03385 65e9730505069f7dbc136c1dd2e9442b 431 PANTHER PTHR33362 9 427 1.6E-107 T 23-04-2016 RD1_RS03385 65e9730505069f7dbc136c1dd2e9442b 431 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 9 418 8.7E-97 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS03385 65e9730505069f7dbc136c1dd2e9442b 431 PIRSF PIRSF006066 3 429 1.3E-130 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS01650 9ba9c8a9e043e28732d8db506b89bfcb 335 PANTHER PTHR11603 1 322 2.8E-111 T 23-04-2016 RD1_RS01650 9ba9c8a9e043e28732d8db506b89bfcb 335 PANTHER PTHR11603:SF156 1 322 2.8E-111 T 23-04-2016 RD1_RS01650 9ba9c8a9e043e28732d8db506b89bfcb 335 SUPERFAMILY SSF52540 18 305 2.76E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01650 9ba9c8a9e043e28732d8db506b89bfcb 335 Gene3D G3DSA:3.40.50.300 30 197 2.6E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01650 9ba9c8a9e043e28732d8db506b89bfcb 335 Gene3D G3DSA:1.10.8.300 211 323 6.6E-30 T 23-04-2016 RD1_RS01650 9ba9c8a9e043e28732d8db506b89bfcb 335 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 48 181 7.2E-57 T 23-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 RD1_RS01650 9ba9c8a9e043e28732d8db506b89bfcb 335 PIRSF PIRSF002849 1 331 1.2E-108 T 23-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 Pfam PF00563 EAL domain 600 831 2.0E-55 T 23-04-2016 IPR001633 EAL domain RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 SMART SM00091 292 359 4.8E-6 T 23-04-2016 IPR000014 PAS domain RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 SUPERFAMILY SSF141868 599 843 1.12E-63 T 23-04-2016 IPR001633 EAL domain RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 SMART SM00052 593 836 2.1E-62 T 23-04-2016 IPR001633 EAL domain RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 SMART SM00086 365 407 4.9E-4 T 23-04-2016 IPR001610 PAC motif RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 Pfam PF13426 PAS domain 303 406 5.8E-19 T 23-04-2016 IPR000014 PAS domain RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 291 413 3.2E-22 T 23-04-2016 IPR000014 PAS domain RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 SUPERFAMILY SSF55785 299 406 2.97E-24 T 23-04-2016 IPR000014 PAS domain RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 Gene3D G3DSA:3.30.70.270 426 590 2.2E-48 T 23-04-2016 RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 Pfam PF00990 Diguanylate cyclase, GGDEF domain 425 579 1.7E-37 T 23-04-2016 IPR000160 GGDEF domain RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 Gene3D G3DSA:3.20.20.450 596 843 1.1E-64 T 23-04-2016 IPR001633 EAL domain RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 PANTHER PTHR33121 572 866 4.4E-54 T 23-04-2016 RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 SMART SM00267 414 583 4.0E-49 T 23-04-2016 IPR000160 GGDEF domain RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 422 581 1.2E-39 T 23-04-2016 IPR000160 GGDEF domain RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 SUPERFAMILY SSF55073 430 585 3.14E-42 T 23-04-2016 IPR029787 Nucleotide cyclase RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 Gene3D G3DSA:3.30.450.20 301 406 6.0E-25 T 23-04-2016 RD1_RS19265 4ee691ab69a05288161ca48bad581c20 866 PANTHER PTHR33121:SF13 572 866 4.4E-54 T 23-04-2016 RD1_RS19410 9bd62e0db2bb70b97a6b24cbeb40e26f 325 PANTHER PTHR32308 209 323 2.0E-99 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like RD1_RS19410 9bd62e0db2bb70b97a6b24cbeb40e26f 325 PANTHER PTHR32308 5 187 2.0E-99 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like RD1_RS19410 9bd62e0db2bb70b97a6b24cbeb40e26f 325 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 15 259 1.4E-40 T 23-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 RD1_RS19410 9bd62e0db2bb70b97a6b24cbeb40e26f 325 PANTHER PTHR32308:SF2 209 323 2.0E-99 T 23-04-2016 RD1_RS19410 9bd62e0db2bb70b97a6b24cbeb40e26f 325 PANTHER PTHR32308:SF2 5 187 2.0E-99 T 23-04-2016 RD1_RS19410 9bd62e0db2bb70b97a6b24cbeb40e26f 325 Gene3D G3DSA:3.20.20.60 11 268 9.8E-76 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS19410 9bd62e0db2bb70b97a6b24cbeb40e26f 325 SUPERFAMILY SSF51621 12 268 1.78E-61 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS19410 9bd62e0db2bb70b97a6b24cbeb40e26f 325 PIRSF PIRSF015582 3 324 2.6E-87 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like RD1_RS13785 ed9934a920a4e98589752cd748c07e44 421 PANTHER PTHR23521 3 413 5.7E-82 T 23-04-2016 RD1_RS13785 ed9934a920a4e98589752cd748c07e44 421 PANTHER PTHR23521:SF2 3 413 5.7E-82 T 23-04-2016 RD1_RS13785 ed9934a920a4e98589752cd748c07e44 421 SUPERFAMILY SSF103473 7 377 1.15E-41 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS13785 ed9934a920a4e98589752cd748c07e44 421 Gene3D G3DSA:1.20.1250.20 8 182 1.1E-13 T 23-04-2016 RD1_RS13785 ed9934a920a4e98589752cd748c07e44 421 Gene3D G3DSA:1.20.1250.20 203 374 1.1E-20 T 23-04-2016 RD1_RS13785 ed9934a920a4e98589752cd748c07e44 421 Pfam PF07690 Major Facilitator Superfamily 205 377 3.9E-18 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS13785 ed9934a920a4e98589752cd748c07e44 421 Pfam PF07690 Major Facilitator Superfamily 11 176 2.9E-10 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 PANTHER PTHR32108:SF0 5 331 1.5E-134 T 23-04-2016 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 Gene3D G3DSA:1.10.150.20 248 329 4.1E-37 T 23-04-2016 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 27 318 2.0E-115 T 23-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 Gene3D G3DSA:3.30.1360.10 16 69 7.0E-8 T 23-04-2016 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 SUPERFAMILY SSF47789 251 328 3.66E-27 T 23-04-2016 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 PANTHER PTHR32108 5 331 1.5E-134 T 23-04-2016 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 SMART SM00662 26 233 2.6E-93 T 23-04-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 Gene3D G3DSA:2.170.120.12 70 176 3.9E-46 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 251 309 4.6E-25 T 23-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 258 329 2.0E-35 T 23-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 SUPERFAMILY SSF56553 56 177 8.5E-43 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 SUPERFAMILY SSF55257 152 236 2.22E-28 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 SUPERFAMILY SSF55257 27 60 2.22E-28 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 32 227 9.8E-24 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 65 158 7.6E-22 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS06655 fe6a71c3cf179b3aa7e7ae78a056b24b 338 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 6 318 35.387 T 23-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS02455 a38735225f5fbca13a297cf1fde7131f 532 Gene3D G3DSA:3.40.720.10 29 426 4.8E-91 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RD1_RS02455 a38735225f5fbca13a297cf1fde7131f 532 Pfam PF00884 Sulfatase 31 368 4.2E-56 T 23-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 RD1_RS02455 a38735225f5fbca13a297cf1fde7131f 532 SUPERFAMILY SSF53649 28 524 1.44E-115 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RD1_RS02455 a38735225f5fbca13a297cf1fde7131f 532 PANTHER PTHR10342:SF241 4 373 1.1E-134 T 23-04-2016 RD1_RS02455 a38735225f5fbca13a297cf1fde7131f 532 Gene3D G3DSA:3.30.1120.10 427 483 3.5E-9 T 23-04-2016 RD1_RS02455 a38735225f5fbca13a297cf1fde7131f 532 PANTHER PTHR10342:SF241 391 519 1.1E-134 T 23-04-2016 RD1_RS02455 a38735225f5fbca13a297cf1fde7131f 532 Pfam PF14707 C-terminal region of aryl-sulfatase 412 478 2.1E-7 T 23-04-2016 RD1_RS02455 a38735225f5fbca13a297cf1fde7131f 532 PANTHER PTHR10342 391 519 1.1E-134 T 23-04-2016 RD1_RS02455 a38735225f5fbca13a297cf1fde7131f 532 PANTHER PTHR10342 4 373 1.1E-134 T 23-04-2016 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 PANTHER PTHR10133:SF27 10 289 0.0 T 23-04-2016 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 PANTHER PTHR10133:SF27 312 932 0.0 T 23-04-2016 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 TIGRFAM TIGR00593 pola: DNA polymerase I 11 932 4.7E-275 T 23-04-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 758 783 2.3E-74 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 682 697 2.3E-74 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 734 747 2.3E-74 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 659 681 2.3E-74 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 704 727 2.3E-74 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 795 806 2.3E-74 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 817 828 2.3E-74 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 848 864 2.3E-74 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 876 889 2.3E-74 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 Pfam PF00476 DNA polymerase family A 554 930 2.5E-141 T 23-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 Pfam PF01612 3'-5' exonuclease 328 521 2.8E-32 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 SUPERFAMILY SSF56672 526 932 1.45E-145 T 23-04-2016 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 Gene3D G3DSA:3.30.420.10 326 546 6.9E-74 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 SUPERFAMILY SSF47807 178 292 4.64E-29 T 23-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 SUPERFAMILY SSF53098 325 522 9.7E-51 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 SMART SM00482 690 893 1.5E-104 T 23-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 SUPERFAMILY SSF88723 9 177 1.43E-50 T 23-04-2016 IPR029060 PIN domain-like RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 Gene3D G3DSA:1.20.1060.10 548 666 5.0E-36 T 23-04-2016 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 Gene3D G3DSA:3.30.70.370 823 933 2.0E-58 T 23-04-2016 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 Gene3D G3DSA:3.30.70.370 667 715 2.0E-58 T 23-04-2016 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 Gene3D G3DSA:3.40.50.1010 10 192 1.1E-65 T 23-04-2016 IPR029060 PIN domain-like RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 ProSitePatterns PS00447 DNA polymerase family A signature. 758 777 - T 23-04-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 Gene3D G3DSA:1.10.150.20 193 253 1.1E-24 T 23-04-2016 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 PANTHER PTHR10133 10 289 0.0 T 23-04-2016 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 PANTHER PTHR10133 312 932 0.0 T 23-04-2016 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 11 177 3.9E-53 T 23-04-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 SMART SM00474 326 522 2.7E-34 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 SMART SM00475 9 269 2.0E-107 T 23-04-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 178 273 1.5E-29 T 23-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 SMART SM00479 346 523 0.0075 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 Gene3D G3DSA:1.10.150.20 716 822 2.4E-32 T 23-04-2016 RD1_RS01635 6b3a039c18af3cec7704b849bec82da0 933 SMART SM00279 180 215 9.6E-10 T 23-04-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 RD1_RS02815 6a78cdb09bafca2dd27b48cecb9044ab 259 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 97 117 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RD1_RS02815 6a78cdb09bafca2dd27b48cecb9044ab 259 Gene3D G3DSA:3.90.226.10 2 195 3.2E-57 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS02815 6a78cdb09bafca2dd27b48cecb9044ab 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 258 2.0E-63 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RD1_RS02815 6a78cdb09bafca2dd27b48cecb9044ab 259 Gene3D G3DSA:1.10.12.10 197 259 8.6E-21 T 23-04-2016 IPR014748 Crontonase, C-terminal RD1_RS02815 6a78cdb09bafca2dd27b48cecb9044ab 259 PANTHER PTHR11941:SF13 4 256 1.0E-80 T 23-04-2016 RD1_RS02815 6a78cdb09bafca2dd27b48cecb9044ab 259 SUPERFAMILY SSF52096 2 259 4.86E-73 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS02815 6a78cdb09bafca2dd27b48cecb9044ab 259 PANTHER PTHR11941 4 256 1.0E-80 T 23-04-2016 RD1_RS18895 d2e486c00e2ef519a9035d5899f89e38 308 PANTHER PTHR30193 19 305 1.8E-95 T 23-04-2016 RD1_RS18895 d2e486c00e2ef519a9035d5899f89e38 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 298 1.2E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18895 d2e486c00e2ef519a9035d5899f89e38 308 PANTHER PTHR30193:SF10 19 305 1.8E-95 T 23-04-2016 RD1_RS18895 d2e486c00e2ef519a9035d5899f89e38 308 Gene3D G3DSA:1.10.3720.10 19 306 6.2E-47 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18895 d2e486c00e2ef519a9035d5899f89e38 308 SUPERFAMILY SSF161098 18 303 5.14E-50 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS01155 ce4754dc7aa68b9104b12c25e26b7eb7 292 Gene3D G3DSA:1.10.10.60 245 291 2.9E-17 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS01155 ce4754dc7aa68b9104b12c25e26b7eb7 292 Pfam PF12833 Helix-turn-helix domain 213 292 2.1E-26 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS01155 ce4754dc7aa68b9104b12c25e26b7eb7 292 PANTHER PTHR11019 3 292 1.1E-34 T 23-04-2016 RD1_RS01155 ce4754dc7aa68b9104b12c25e26b7eb7 292 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 244 286 - T 23-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RD1_RS01155 ce4754dc7aa68b9104b12c25e26b7eb7 292 SUPERFAMILY SSF46689 243 291 1.08E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS01155 ce4754dc7aa68b9104b12c25e26b7eb7 292 SUPERFAMILY SSF46689 193 240 4.3E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS01155 ce4754dc7aa68b9104b12c25e26b7eb7 292 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 259 274 2.55E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RD1_RS01155 ce4754dc7aa68b9104b12c25e26b7eb7 292 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 274 290 2.55E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RD1_RS01155 ce4754dc7aa68b9104b12c25e26b7eb7 292 Gene3D G3DSA:1.10.10.60 194 244 7.0E-19 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS01155 ce4754dc7aa68b9104b12c25e26b7eb7 292 SMART SM00342 207 290 2.1E-33 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS17765 e6675212d7d27bf09514bd9599bfe711 364 SUPERFAMILY SSF50331 235 361 2.67E-23 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS17765 e6675212d7d27bf09514bd9599bfe711 364 Pfam PF00005 ABC transporter 19 160 7.6E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS17765 e6675212d7d27bf09514bd9599bfe711 364 Gene3D G3DSA:2.40.50.140 288 346 1.2E-12 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS17765 e6675212d7d27bf09514bd9599bfe711 364 PANTHER PTHR24220 4 266 1.7E-125 T 23-04-2016 RD1_RS17765 e6675212d7d27bf09514bd9599bfe711 364 PANTHER PTHR24220 283 317 1.7E-125 T 23-04-2016 RD1_RS17765 e6675212d7d27bf09514bd9599bfe711 364 SUPERFAMILY SSF52540 3 241 1.67E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17765 e6675212d7d27bf09514bd9599bfe711 364 Pfam PF08402 TOBE domain 283 354 2.7E-5 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS17765 e6675212d7d27bf09514bd9599bfe711 364 PANTHER PTHR24220:SF151 4 266 1.7E-125 T 23-04-2016 RD1_RS17765 e6675212d7d27bf09514bd9599bfe711 364 PANTHER PTHR24220:SF151 283 317 1.7E-125 T 23-04-2016 RD1_RS17765 e6675212d7d27bf09514bd9599bfe711 364 Gene3D G3DSA:3.40.50.300 2 233 3.5E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17765 e6675212d7d27bf09514bd9599bfe711 364 Gene3D G3DSA:2.40.50.100 348 360 1.7E-9 T 23-04-2016 RD1_RS17765 e6675212d7d27bf09514bd9599bfe711 364 Gene3D G3DSA:2.40.50.100 238 287 1.7E-9 T 23-04-2016 RD1_RS17765 e6675212d7d27bf09514bd9599bfe711 364 SMART SM00382 27 210 4.3E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS05885 1ec0d003122203cf9d97207944354bd0 154 Pfam PF05751 FixH 3 145 1.8E-33 T 23-04-2016 IPR008620 Nitrogen fixation protein FixH RD1_RS05885 1ec0d003122203cf9d97207944354bd0 154 PIRSF PIRSF011386 1 150 6.4E-40 T 23-04-2016 IPR018037 Nitrogen fixation protein FixH, Proteobacterial RD1_RS18300 efe43169c60e96c3199ba5b0227fdd09 178 Gene3D G3DSA:1.10.10.10 113 173 1.3E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18300 efe43169c60e96c3199ba5b0227fdd09 178 Pfam PF04542 Sigma-70 region 2 21 87 2.1E-16 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS18300 efe43169c60e96c3199ba5b0227fdd09 178 Pfam PF08281 Sigma-70, region 4 116 168 2.1E-11 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS18300 efe43169c60e96c3199ba5b0227fdd09 178 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 171 5.2E-31 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS18300 efe43169c60e96c3199ba5b0227fdd09 178 SUPERFAMILY SSF88946 1 103 4.71E-26 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS18300 efe43169c60e96c3199ba5b0227fdd09 178 PANTHER PTHR30173 1 176 4.5E-45 T 23-04-2016 RD1_RS18300 efe43169c60e96c3199ba5b0227fdd09 178 SUPERFAMILY SSF88659 112 172 8.6E-13 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS18300 efe43169c60e96c3199ba5b0227fdd09 178 Gene3D G3DSA:1.10.1740.10 1 107 1.8E-30 T 23-04-2016 RD1_RS02490 41d92a2099a1de56031b0f42a98b254f 180 PANTHER PTHR11839:SF9 1 180 4.8E-32 T 23-04-2016 RD1_RS02490 41d92a2099a1de56031b0f42a98b254f 180 Pfam PF00293 NUDIX domain 44 157 6.7E-9 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RD1_RS02490 41d92a2099a1de56031b0f42a98b254f 180 Gene3D G3DSA:3.90.79.10 3 175 7.0E-44 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS02490 41d92a2099a1de56031b0f42a98b254f 180 PANTHER PTHR11839 1 180 4.8E-32 T 23-04-2016 RD1_RS02490 41d92a2099a1de56031b0f42a98b254f 180 SUPERFAMILY SSF55811 4 175 6.77E-36 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS18015 e810cfdf39e27409aec0b26efed6c03a 443 Pfam PF00206 Lyase 26 288 1.5E-32 T 23-04-2016 IPR022761 Fumarate lyase, N-terminal RD1_RS18015 e810cfdf39e27409aec0b26efed6c03a 443 Gene3D G3DSA:1.10.275.10 16 105 1.1E-25 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal RD1_RS18015 e810cfdf39e27409aec0b26efed6c03a 443 Gene3D G3DSA:1.20.200.10 106 369 2.1E-64 T 23-04-2016 RD1_RS18015 e810cfdf39e27409aec0b26efed6c03a 443 Gene3D G3DSA:1.10.40.30 370 431 2.1E-8 T 23-04-2016 RD1_RS18015 e810cfdf39e27409aec0b26efed6c03a 443 SMART SM00998 363 435 6.9E-5 T 23-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 RD1_RS18015 e810cfdf39e27409aec0b26efed6c03a 443 SUPERFAMILY SSF48557 14 410 2.2E-80 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 RD1_RS18015 e810cfdf39e27409aec0b26efed6c03a 443 PANTHER PTHR11444 22 406 1.6E-75 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS18015 e810cfdf39e27409aec0b26efed6c03a 443 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 7.4E-12 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS18015 e810cfdf39e27409aec0b26efed6c03a 443 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 7.4E-12 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS18015 e810cfdf39e27409aec0b26efed6c03a 443 PRINTS PR00149 Fumarate lyase superfamily signature 275 291 7.4E-12 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS18015 e810cfdf39e27409aec0b26efed6c03a 443 PANTHER PTHR11444:SF21 22 406 1.6E-75 T 23-04-2016 RD1_RS17635 79f20b5fd3ccdbc093de1ce49bd6d413 607 PANTHER PTHR24221:SF157 41 606 5.0E-112 T 23-04-2016 RD1_RS17635 79f20b5fd3ccdbc093de1ce49bd6d413 607 SUPERFAMILY SSF52540 355 601 6.21E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17635 79f20b5fd3ccdbc093de1ce49bd6d413 607 Pfam PF00005 ABC transporter 377 531 5.3E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS17635 79f20b5fd3ccdbc093de1ce49bd6d413 607 SMART SM00382 386 583 2.7E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS17635 79f20b5fd3ccdbc093de1ce49bd6d413 607 Gene3D G3DSA:1.20.1560.10 29 323 8.1E-16 T 23-04-2016 RD1_RS17635 79f20b5fd3ccdbc093de1ce49bd6d413 607 SUPERFAMILY SSF90123 20 323 3.01E-22 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS17635 79f20b5fd3ccdbc093de1ce49bd6d413 607 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS17635 79f20b5fd3ccdbc093de1ce49bd6d413 607 PANTHER PTHR24221 41 606 5.0E-112 T 23-04-2016 RD1_RS17635 79f20b5fd3ccdbc093de1ce49bd6d413 607 Gene3D G3DSA:3.40.50.300 360 596 1.1E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14185 d841451b47b0a88272a339adb1bfe30e 213 SUPERFAMILY SSF46894 137 208 2.41E-15 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RD1_RS14185 d841451b47b0a88272a339adb1bfe30e 213 PANTHER PTHR26402:SF613 7 203 1.4E-57 T 23-04-2016 RD1_RS14185 d841451b47b0a88272a339adb1bfe30e 213 SMART SM00448 7 118 5.3E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS14185 d841451b47b0a88272a339adb1bfe30e 213 SUPERFAMILY SSF52172 7 152 7.68E-34 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS14185 d841451b47b0a88272a339adb1bfe30e 213 Gene3D G3DSA:3.40.50.2300 7 150 1.6E-34 T 23-04-2016 RD1_RS14185 d841451b47b0a88272a339adb1bfe30e 213 Gene3D G3DSA:1.10.10.10 151 207 1.1E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS14185 d841451b47b0a88272a339adb1bfe30e 213 SMART SM00421 142 202 2.7E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS14185 d841451b47b0a88272a339adb1bfe30e 213 Pfam PF00072 Response regulator receiver domain 9 119 2.9E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS14185 d841451b47b0a88272a339adb1bfe30e 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 144 202 1.1E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RD1_RS14185 d841451b47b0a88272a339adb1bfe30e 213 PANTHER PTHR26402 7 203 1.4E-57 T 23-04-2016 RD1_RS03965 5ca7e58b7e921a2a838ffd50f04c7e91 376 SUPERFAMILY SSF53822 59 328 5.89E-40 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS03965 5ca7e58b7e921a2a838ffd50f04c7e91 376 Pfam PF13407 Periplasmic binding protein domain 61 318 3.8E-35 T 23-04-2016 IPR025997 Periplasmic binding protein RD1_RS03965 5ca7e58b7e921a2a838ffd50f04c7e91 376 PANTHER PTHR32196:SF9 58 266 2.3E-17 T 23-04-2016 RD1_RS03965 5ca7e58b7e921a2a838ffd50f04c7e91 376 Gene3D G3DSA:3.40.50.2300 180 328 1.3E-20 T 23-04-2016 RD1_RS03965 5ca7e58b7e921a2a838ffd50f04c7e91 376 Gene3D G3DSA:3.40.50.2300 57 179 3.0E-19 T 23-04-2016 RD1_RS03965 5ca7e58b7e921a2a838ffd50f04c7e91 376 PANTHER PTHR32196 58 266 2.3E-17 T 23-04-2016 RD1_RS11935 12fc2203be3617560a031fb987decd94 786 PIRSF PIRSF006076 14 786 4.4E-200 T 23-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RD1_RS11935 12fc2203be3617560a031fb987decd94 786 Pfam PF01103 Surface antigen 469 786 9.7E-58 T 23-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 RD1_RS11935 12fc2203be3617560a031fb987decd94 786 Pfam PF07244 Surface antigen variable number repeat 197 284 2.0E-13 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 RD1_RS11935 12fc2203be3617560a031fb987decd94 786 Pfam PF07244 Surface antigen variable number repeat 371 442 8.1E-11 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 RD1_RS11935 12fc2203be3617560a031fb987decd94 786 Pfam PF07244 Surface antigen variable number repeat 49 114 6.9E-6 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 RD1_RS11935 12fc2203be3617560a031fb987decd94 786 Pfam PF07244 Surface antigen variable number repeat 116 193 1.0E-12 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 RD1_RS11935 12fc2203be3617560a031fb987decd94 786 PANTHER PTHR12815 27 786 2.1E-134 T 23-04-2016 RD1_RS11935 12fc2203be3617560a031fb987decd94 786 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 32 786 21.009 T 23-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RD1_RS11935 12fc2203be3617560a031fb987decd94 786 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 50 786 4.7E-193 T 23-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RD1_RS11935 12fc2203be3617560a031fb987decd94 786 PANTHER PTHR12815:SF11 27 786 2.1E-134 T 23-04-2016 RD1_RS10230 c434c67f793516fb65e317deb5e7ffa7 199 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 33 185 3.4E-48 T 23-04-2016 IPR010319 Transglutaminase-like cysteine peptidase, predicted RD1_RS10230 c434c67f793516fb65e317deb5e7ffa7 199 PANTHER PTHR39327 35 185 9.0E-28 T 23-04-2016 RD1_RS10230 c434c67f793516fb65e317deb5e7ffa7 199 PANTHER PTHR39327:SF2 35 185 9.0E-28 T 23-04-2016 RD1_RS14070 8b73d576b93e76533fbea22f35d97f1c 152 SMART SM00260 7 144 1.9E-46 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RD1_RS14070 8b73d576b93e76533fbea22f35d97f1c 152 Gene3D G3DSA:2.40.50.180 49 95 6.4E-13 T 23-04-2016 RD1_RS14070 8b73d576b93e76533fbea22f35d97f1c 152 PANTHER PTHR22617 6 147 4.2E-43 T 23-04-2016 RD1_RS14070 8b73d576b93e76533fbea22f35d97f1c 152 SUPERFAMILY SSF50341 6 146 9.42E-41 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RD1_RS14070 8b73d576b93e76533fbea22f35d97f1c 152 Pfam PF01584 CheW-like domain 11 146 1.1E-39 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RD1_RS04600 b9e8e08a9eee321ff5f0743216222045 198 Pfam PF01810 LysE type translocator 17 188 1.4E-15 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS04600 b9e8e08a9eee321ff5f0743216222045 198 PANTHER PTHR30086:SF12 1 196 5.7E-70 T 23-04-2016 RD1_RS04600 b9e8e08a9eee321ff5f0743216222045 198 PANTHER PTHR30086 1 196 5.7E-70 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS15520 1100efa18ad51a4bc316bcd885736e9e 149 PANTHER PTHR32552:SF34 12 149 9.7E-38 T 23-04-2016 RD1_RS15520 1100efa18ad51a4bc316bcd885736e9e 149 Pfam PF00665 Integrase core domain 15 114 7.2E-28 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS15520 1100efa18ad51a4bc316bcd885736e9e 149 Gene3D G3DSA:3.30.420.10 12 149 3.8E-34 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS15520 1100efa18ad51a4bc316bcd885736e9e 149 PANTHER PTHR32552 12 149 9.7E-38 T 23-04-2016 RD1_RS15520 1100efa18ad51a4bc316bcd885736e9e 149 SUPERFAMILY SSF53098 12 148 2.78E-35 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS08375 bd78744935c767e07ecdff326eb2a9b4 606 TIGRFAM TIGR02290 M3_fam_3: oligoendopeptidase, pepF/M3 family 25 604 6.0E-185 T 23-04-2016 IPR011977 Peptidase M3B, oligoendopeptidase-related clade 3 RD1_RS08375 bd78744935c767e07ecdff326eb2a9b4 606 Pfam PF01432 Peptidase family M3 351 591 2.5E-30 T 23-04-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 RD1_RS08375 bd78744935c767e07ecdff326eb2a9b4 606 Gene3D G3DSA:3.40.390.10 389 433 5.6E-5 T 23-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 RD1_RS08375 bd78744935c767e07ecdff326eb2a9b4 606 PANTHER PTHR11804:SF8 202 606 1.1E-66 T 23-04-2016 RD1_RS08375 bd78744935c767e07ecdff326eb2a9b4 606 Pfam PF08439 Oligopeptidase F 128 196 1.6E-16 T 23-04-2016 IPR013647 Oligopeptidase F, N-terminal domain RD1_RS08375 bd78744935c767e07ecdff326eb2a9b4 606 PANTHER PTHR11804 202 606 1.1E-66 T 23-04-2016 RD1_RS08375 bd78744935c767e07ecdff326eb2a9b4 606 SUPERFAMILY SSF55486 16 591 9.16E-114 T 23-04-2016 RD1_RS12870 f44de156c583e2b2c37582f1f3dc5e5d 930 PANTHER PTHR30621 63 928 8.1E-186 T 23-04-2016 RD1_RS12870 f44de156c583e2b2c37582f1f3dc5e5d 930 SUPERFAMILY SSF81593 779 916 2.59E-17 T 23-04-2016 RD1_RS12870 f44de156c583e2b2c37582f1f3dc5e5d 930 Pfam PF08335 GlnD PII-uridylyltransferase 297 437 3.6E-35 T 23-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RD1_RS12870 f44de156c583e2b2c37582f1f3dc5e5d 930 Pfam PF08335 GlnD PII-uridylyltransferase 802 916 1.9E-5 T 23-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RD1_RS12870 f44de156c583e2b2c37582f1f3dc5e5d 930 SUPERFAMILY SSF81593 285 437 5.65E-36 T 23-04-2016 RD1_RS12870 f44de156c583e2b2c37582f1f3dc5e5d 930 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 525 761 4.5E-56 T 23-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 RD1_RS12870 f44de156c583e2b2c37582f1f3dc5e5d 930 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 40 275 1.8E-54 T 23-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 RD1_RS12870 f44de156c583e2b2c37582f1f3dc5e5d 930 Gene3D G3DSA:3.30.460.10 608 770 1.1E-44 T 23-04-2016 RD1_RS12870 f44de156c583e2b2c37582f1f3dc5e5d 930 Gene3D G3DSA:3.30.460.10 110 283 2.2E-49 T 23-04-2016 RD1_RS12870 f44de156c583e2b2c37582f1f3dc5e5d 930 SUPERFAMILY SSF81301 495 777 4.67E-68 T 23-04-2016 RD1_RS12870 f44de156c583e2b2c37582f1f3dc5e5d 930 SUPERFAMILY SSF81301 19 284 2.39E-63 T 23-04-2016 RD1_RS00360 827970d05134575ab2e4c8843ee33f72 375 PANTHER PTHR11751:SF301 1 371 8.2E-72 T 23-04-2016 RD1_RS00360 827970d05134575ab2e4c8843ee33f72 375 Pfam PF00155 Aminotransferase class I and II 53 364 5.8E-44 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS00360 827970d05134575ab2e4c8843ee33f72 375 Gene3D G3DSA:3.40.640.10 55 234 7.0E-52 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS00360 827970d05134575ab2e4c8843ee33f72 375 Gene3D G3DSA:3.90.1150.10 235 371 5.4E-15 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS00360 827970d05134575ab2e4c8843ee33f72 375 SUPERFAMILY SSF53383 52 371 2.1E-73 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS00360 827970d05134575ab2e4c8843ee33f72 375 PANTHER PTHR11751 1 371 8.2E-72 T 23-04-2016 RD1_RS06270 d0751eddab03538a1ca029be9d0db867 202 SUPERFAMILY SSF55083 20 193 3.53E-40 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RD1_RS06270 d0751eddab03538a1ca029be9d0db867 202 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 108 119 - T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RD1_RS06270 d0751eddab03538a1ca029be9d0db867 202 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 23 173 2.1E-28 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RD1_RS06270 d0751eddab03538a1ca029be9d0db867 202 PANTHER PTHR20941:SF10 2 122 2.0E-41 T 23-04-2016 RD1_RS06270 d0751eddab03538a1ca029be9d0db867 202 PANTHER PTHR20941:SF10 141 201 2.0E-41 T 23-04-2016 RD1_RS06270 d0751eddab03538a1ca029be9d0db867 202 PANTHER PTHR20941 2 122 2.0E-41 T 23-04-2016 RD1_RS06270 d0751eddab03538a1ca029be9d0db867 202 PANTHER PTHR20941 141 201 2.0E-41 T 23-04-2016 RD1_RS06270 d0751eddab03538a1ca029be9d0db867 202 Gene3D G3DSA:3.30.70.560 21 194 1.2E-45 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RD1_RS06270 d0751eddab03538a1ca029be9d0db867 202 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 22 173 5.4E-29 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RD1_RS00075 322a0603f862a2fa99d4d4ca245b7011 215 PANTHER PTHR11079 1 214 4.5E-59 T 23-04-2016 RD1_RS00075 322a0603f862a2fa99d4d4ca245b7011 215 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 6 213 2.6E-58 T 23-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS00075 322a0603f862a2fa99d4d4ca245b7011 215 SUPERFAMILY SSF55120 7 213 4.48E-64 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS00075 322a0603f862a2fa99d4d4ca245b7011 215 PANTHER PTHR11079:SF86 1 214 4.5E-59 T 23-04-2016 RD1_RS00075 322a0603f862a2fa99d4d4ca245b7011 215 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 58 72 - T 23-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS00075 322a0603f862a2fa99d4d4ca245b7011 215 Pfam PF00849 RNA pseudouridylate synthase 21 166 1.4E-27 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS04210 9550996f40b68952d2c7cfcbab458bdf 542 PANTHER PTHR30183 404 540 6.8E-161 T 23-04-2016 RD1_RS04210 9550996f40b68952d2c7cfcbab458bdf 542 PANTHER PTHR30183 9 387 6.8E-161 T 23-04-2016 RD1_RS04210 9550996f40b68952d2c7cfcbab458bdf 542 Gene3D G3DSA:1.10.3720.10 1 253 1.1E-34 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04210 9550996f40b68952d2c7cfcbab458bdf 542 Gene3D G3DSA:1.10.3720.10 290 529 8.3E-21 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04210 9550996f40b68952d2c7cfcbab458bdf 542 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 63 253 2.6E-5 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04210 9550996f40b68952d2c7cfcbab458bdf 542 SUPERFAMILY SSF161098 284 530 2.75E-29 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04210 9550996f40b68952d2c7cfcbab458bdf 542 PANTHER PTHR30183:SF2 404 540 6.8E-161 T 23-04-2016 RD1_RS04210 9550996f40b68952d2c7cfcbab458bdf 542 PANTHER PTHR30183:SF2 9 387 6.8E-161 T 23-04-2016 RD1_RS04210 9550996f40b68952d2c7cfcbab458bdf 542 SUPERFAMILY SSF161098 5 254 3.49E-42 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08435 f2c664e46b4599d4a1dff8dc8f6e80e3 337 SUPERFAMILY SSF52733 13 334 7.59E-104 T 23-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RD1_RS08435 f2c664e46b4599d4a1dff8dc8f6e80e3 337 PANTHER PTHR21712 11 336 2.9E-78 T 23-04-2016 RD1_RS08435 f2c664e46b4599d4a1dff8dc8f6e80e3 337 Pfam PF02277 Phosphoribosyltransferase 19 334 2.2E-109 T 23-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RD1_RS08435 f2c664e46b4599d4a1dff8dc8f6e80e3 337 Gene3D G3DSA:3.40.50.10210 80 317 2.6E-82 T 23-04-2016 RD1_RS08435 f2c664e46b4599d4a1dff8dc8f6e80e3 337 Gene3D G3DSA:1.10.1610.10 10 79 4.0E-30 T 23-04-2016 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RD1_RS08435 f2c664e46b4599d4a1dff8dc8f6e80e3 337 PANTHER PTHR21712:SF4 11 336 2.9E-78 T 23-04-2016 RD1_RS08435 f2c664e46b4599d4a1dff8dc8f6e80e3 337 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 20 336 32.484 T 23-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RD1_RS08435 f2c664e46b4599d4a1dff8dc8f6e80e3 337 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 22 334 4.6E-109 T 23-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RD1_RS01760 38faf917e808e8a8061d2ae7f9e8f070 266 Gene3D G3DSA:3.40.190.80 164 259 2.5E-41 T 23-04-2016 RD1_RS01760 38faf917e808e8a8061d2ae7f9e8f070 266 Pfam PF00459 Inositol monophosphatase family 5 238 1.1E-47 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS01760 38faf917e808e8a8061d2ae7f9e8f070 266 Gene3D G3DSA:3.30.540.10 3 163 5.1E-41 T 23-04-2016 RD1_RS01760 38faf917e808e8a8061d2ae7f9e8f070 266 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 10 256 1.6E-79 T 23-04-2016 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial GO:0000287|GO:0016020 KEGG: 00920+3.1.3.7 RD1_RS01760 38faf917e808e8a8061d2ae7f9e8f070 266 PANTHER PTHR20854:SF5 1 247 1.4E-59 T 23-04-2016 RD1_RS01760 38faf917e808e8a8061d2ae7f9e8f070 266 PANTHER PTHR20854 1 247 1.4E-59 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS01760 38faf917e808e8a8061d2ae7f9e8f070 266 SUPERFAMILY SSF56655 3 259 5.5E-71 T 23-04-2016 RD1_RS01760 38faf917e808e8a8061d2ae7f9e8f070 266 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 217 231 - T 23-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RD1_RS01760 38faf917e808e8a8061d2ae7f9e8f070 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 1.4E-10 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS01760 38faf917e808e8a8061d2ae7f9e8f070 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 214 238 1.4E-10 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS01760 38faf917e808e8a8061d2ae7f9e8f070 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 1.4E-10 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS01760 38faf917e808e8a8061d2ae7f9e8f070 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 1.4E-10 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS05930 855f70b8eb2462bf4d2c97173b18ac1e 344 PANTHER PTHR21091 13 342 3.2E-103 T 23-04-2016 RD1_RS05930 855f70b8eb2462bf4d2c97173b18ac1e 344 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 342 1.4E-111 T 23-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05930 855f70b8eb2462bf4d2c97173b18ac1e 344 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 7 342 8.5E-124 T 23-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05930 855f70b8eb2462bf4d2c97173b18ac1e 344 Gene3D G3DSA:3.20.20.210 4 342 5.9E-119 T 23-04-2016 RD1_RS05930 855f70b8eb2462bf4d2c97173b18ac1e 344 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 20 29 - T 23-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05930 855f70b8eb2462bf4d2c97173b18ac1e 344 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 140 156 - T 23-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05930 855f70b8eb2462bf4d2c97173b18ac1e 344 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 4 344 43.626 T 23-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05930 855f70b8eb2462bf4d2c97173b18ac1e 344 PANTHER PTHR21091:SF2 13 342 3.2E-103 T 23-04-2016 RD1_RS05930 855f70b8eb2462bf4d2c97173b18ac1e 344 SUPERFAMILY SSF51726 4 342 2.09E-104 T 23-04-2016 RD1_RS13330 960caebc9725f5356df4e37926e3daa7 396 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 159 387 1.7E-37 T 23-04-2016 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 RD1_RS13330 960caebc9725f5356df4e37926e3daa7 396 PANTHER PTHR30074:SF2 324 389 6.6E-61 T 23-04-2016 RD1_RS13330 960caebc9725f5356df4e37926e3daa7 396 PANTHER PTHR30074:SF2 66 292 6.6E-61 T 23-04-2016 RD1_RS13330 960caebc9725f5356df4e37926e3daa7 396 Pfam PF01292 Prokaryotic cytochrome b561 161 359 1.9E-15 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RD1_RS13330 960caebc9725f5356df4e37926e3daa7 396 Gene3D G3DSA:1.20.950.20 155 392 1.2E-60 T 23-04-2016 RD1_RS13330 960caebc9725f5356df4e37926e3daa7 396 PANTHER PTHR30074 324 389 6.6E-61 T 23-04-2016 RD1_RS13330 960caebc9725f5356df4e37926e3daa7 396 PANTHER PTHR30074 66 292 6.6E-61 T 23-04-2016 RD1_RS13330 960caebc9725f5356df4e37926e3daa7 396 SUPERFAMILY SSF81342 324 391 2.28E-42 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RD1_RS13330 960caebc9725f5356df4e37926e3daa7 396 SUPERFAMILY SSF81342 155 297 2.28E-42 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RD1_RS16550 234a294d7f3e4c114bb3ec61dbacd949 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 19 294 1.4E-47 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS16550 234a294d7f3e4c114bb3ec61dbacd949 308 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 16 307 1.1E-123 T 23-04-2016 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type RD1_RS16550 234a294d7f3e4c114bb3ec61dbacd949 308 PANTHER PTHR11795 19 307 3.4E-97 T 23-04-2016 RD1_RS16550 234a294d7f3e4c114bb3ec61dbacd949 308 PANTHER PTHR11795:SF349 19 307 3.4E-97 T 23-04-2016 RD1_RS18120 872f6ad1e6a1cf9ee95955e31060da2f 116 SUPERFAMILY SSF56399 2 105 5.18E-36 T 23-04-2016 RD1_RS18120 872f6ad1e6a1cf9ee95955e31060da2f 116 PANTHER PTHR34129 2 115 1.2E-25 T 23-04-2016 RD1_RS18120 872f6ad1e6a1cf9ee95955e31060da2f 116 Pfam PF06108 Protein of unknown function (DUF952) 7 94 2.5E-28 T 23-04-2016 IPR009297 Protein of unknown function DUF952 RD1_RS18265 ad057912d42da77244e96e56ce53196d 427 PANTHER PTHR33362:SF2 3 422 1.1E-181 T 23-04-2016 RD1_RS18265 ad057912d42da77244e96e56ce53196d 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 417 3.8E-108 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS18265 ad057912d42da77244e96e56ce53196d 427 PANTHER PTHR33362 3 422 1.1E-181 T 23-04-2016 RD1_RS18265 ad057912d42da77244e96e56ce53196d 427 PIRSF PIRSF006066 1 427 6.7E-149 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS18265 ad057912d42da77244e96e56ce53196d 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 422 9.3E-129 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS04665 75374a7ed22e1c5de5da094ac4bc99de 357 SUPERFAMILY SSF46589 9 96 1.94E-18 T 23-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RD1_RS04665 75374a7ed22e1c5de5da094ac4bc99de 357 Gene3D G3DSA:3.30.930.10 6 342 4.9E-120 T 23-04-2016 RD1_RS04665 75374a7ed22e1c5de5da094ac4bc99de 357 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 17 84 4.3E-18 T 23-04-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RD1_RS04665 75374a7ed22e1c5de5da094ac4bc99de 357 PANTHER PTHR11538 40 49 1.3E-94 T 23-04-2016 RD1_RS04665 75374a7ed22e1c5de5da094ac4bc99de 357 PANTHER PTHR11538 87 339 1.3E-94 T 23-04-2016 RD1_RS04665 75374a7ed22e1c5de5da094ac4bc99de 357 SUPERFAMILY SSF55681 89 342 2.41E-75 T 23-04-2016 RD1_RS04665 75374a7ed22e1c5de5da094ac4bc99de 357 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 37 340 1.3E-98 T 23-04-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RD1_RS04665 75374a7ed22e1c5de5da094ac4bc99de 357 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 5 341 44.804 T 23-04-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 RD1_RS04665 75374a7ed22e1c5de5da094ac4bc99de 357 Pfam PF01409 tRNA synthetases class II core domain (F) 89 340 2.8E-99 T 23-04-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 RD1_RS15180 f483cab1465a2fe8e960e5f5a8ddecba 450 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 434 1.0E-147 T 23-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 RD1_RS15180 f483cab1465a2fe8e960e5f5a8ddecba 450 Pfam PF12804 MobA-like NTP transferase domain 6 192 5.5E-20 T 23-04-2016 IPR025877 MobA-like NTP transferase RD1_RS15180 f483cab1465a2fe8e960e5f5a8ddecba 450 SUPERFAMILY SSF53448 1 251 6.08E-56 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS15180 f483cab1465a2fe8e960e5f5a8ddecba 450 Gene3D G3DSA:3.90.550.10 1 245 7.7E-61 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS15180 f483cab1465a2fe8e960e5f5a8ddecba 450 PANTHER PTHR22572 4 431 1.6E-158 T 23-04-2016 RD1_RS15180 f483cab1465a2fe8e960e5f5a8ddecba 450 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 376 410 3.0E-8 T 23-04-2016 IPR001451 Hexapeptide repeat RD1_RS15180 f483cab1465a2fe8e960e5f5a8ddecba 450 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 264 298 2.6E-7 T 23-04-2016 IPR001451 Hexapeptide repeat RD1_RS15180 f483cab1465a2fe8e960e5f5a8ddecba 450 Gene3D G3DSA:2.160.10.10 317 428 3.7E-30 T 23-04-2016 RD1_RS15180 f483cab1465a2fe8e960e5f5a8ddecba 450 PANTHER PTHR22572:SF115 4 431 1.6E-158 T 23-04-2016 RD1_RS15180 f483cab1465a2fe8e960e5f5a8ddecba 450 SUPERFAMILY SSF51161 255 420 9.02E-46 T 23-04-2016 IPR011004 Trimeric LpxA-like RD1_RS15180 f483cab1465a2fe8e960e5f5a8ddecba 450 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 434 37.739 T 23-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 RD1_RS15180 f483cab1465a2fe8e960e5f5a8ddecba 450 Gene3D G3DSA:2.160.10.10 246 316 6.3E-13 T 23-04-2016 RD1_RS19235 5c8bda7cc936aa7ccc845d090cb6846b 239 PIRSF PIRSF006648 4 239 5.4E-14 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RD1_RS19235 5c8bda7cc936aa7ccc845d090cb6846b 239 Pfam PF01061 ABC-2 type transporter 17 197 6.5E-9 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 Pfam PF06071 Protein of unknown function (DUF933) 281 364 2.6E-39 T 23-04-2016 IPR013029 Domain of unknown function DUF933 RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 364 7.9E-150 T 23-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 88 106 3.3E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 71 86 3.3E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 27 45 3.3E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 3.3E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 PANTHER PTHR23305 1 365 5.7E-202 T 23-04-2016 RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 Gene3D G3DSA:1.10.150.300 132 201 2.5E-26 T 23-04-2016 IPR023192 TGS-like domain RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 PANTHER PTHR23305:SF12 1 365 5.7E-202 T 23-04-2016 RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 Pfam PF01926 50S ribosome-binding GTPase 5 120 6.3E-23 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 SUPERFAMILY SSF52540 3 303 1.7E-79 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 Gene3D G3DSA:3.40.50.300 4 131 8.3E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 Gene3D G3DSA:3.40.50.300 202 268 8.3E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 Gene3D G3DSA:3.10.20.30 269 364 4.2E-48 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 PIRSF PIRSF006641 1 365 2.5E-154 T 23-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 365 43.046 T 23-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RD1_RS17825 2e54b2294b5d56f2e1cb0eddea84e0e2 365 SUPERFAMILY SSF81271 281 361 2.83E-35 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RD1_RS02485 d7d3169c86db5afa0012b22c53b14ccf 259 Pfam PF02633 Creatinine amidohydrolase 9 246 8.1E-57 T 23-04-2016 IPR003785 Creatininase/formamide hydrolase KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 RD1_RS02485 d7d3169c86db5afa0012b22c53b14ccf 259 PANTHER PTHR35005 1 254 5.1E-40 T 23-04-2016 RD1_RS02485 d7d3169c86db5afa0012b22c53b14ccf 259 Gene3D G3DSA:3.40.50.10310 5 252 1.3E-67 T 23-04-2016 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 RD1_RS02485 d7d3169c86db5afa0012b22c53b14ccf 259 SUPERFAMILY SSF102215 6 250 9.29E-61 T 23-04-2016 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 RD1_RS02485 d7d3169c86db5afa0012b22c53b14ccf 259 PANTHER PTHR35005:SF1 1 254 5.1E-40 T 23-04-2016 RD1_RS02370 ab8bf871364f0ee87a25f6e7681fd21f 272 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 117 134 - T 23-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RD1_RS02370 ab8bf871364f0ee87a25f6e7681fd21f 272 PRINTS PR00069 Aldo-keto reductase signature 30 54 1.0E-40 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RD1_RS02370 ab8bf871364f0ee87a25f6e7681fd21f 272 PRINTS PR00069 Aldo-keto reductase signature 188 212 1.0E-40 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RD1_RS02370 ab8bf871364f0ee87a25f6e7681fd21f 272 PRINTS PR00069 Aldo-keto reductase signature 86 104 1.0E-40 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RD1_RS02370 ab8bf871364f0ee87a25f6e7681fd21f 272 PRINTS PR00069 Aldo-keto reductase signature 117 134 1.0E-40 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RD1_RS02370 ab8bf871364f0ee87a25f6e7681fd21f 272 PRINTS PR00069 Aldo-keto reductase signature 151 180 1.0E-40 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RD1_RS02370 ab8bf871364f0ee87a25f6e7681fd21f 272 SUPERFAMILY SSF51430 11 257 9.43E-71 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS02370 ab8bf871364f0ee87a25f6e7681fd21f 272 Gene3D G3DSA:3.20.20.100 13 253 6.2E-76 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS02370 ab8bf871364f0ee87a25f6e7681fd21f 272 PANTHER PTHR11732 18 271 6.2E-99 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RD1_RS02370 ab8bf871364f0ee87a25f6e7681fd21f 272 Pfam PF00248 Aldo/keto reductase family 25 252 5.1E-44 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS08525 9c96f16c569827a59eb865d75e8ea872 410 Gene3D G3DSA:3.40.50.1390 9 141 3.3E-18 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RD1_RS08525 9c96f16c569827a59eb865d75e8ea872 410 Pfam PF00239 Resolvase, N terminal domain 10 154 2.4E-19 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RD1_RS08525 9c96f16c569827a59eb865d75e8ea872 410 PANTHER PTHR30461:SF3 4 340 2.2E-23 T 23-04-2016 RD1_RS08525 9c96f16c569827a59eb865d75e8ea872 410 SUPERFAMILY SSF53041 10 159 9.29E-21 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RD1_RS08525 9c96f16c569827a59eb865d75e8ea872 410 SMART SM00857 10 160 3.1E-31 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RD1_RS08525 9c96f16c569827a59eb865d75e8ea872 410 PANTHER PTHR30461 4 340 2.2E-23 T 23-04-2016 RD1_RS08525 9c96f16c569827a59eb865d75e8ea872 410 Pfam PF13408 Recombinase zinc beta ribbon domain 290 347 3.5E-9 T 23-04-2016 IPR025827 Recombinase zinc beta ribbon domain RD1_RS06885 b03fee090851eecbdcb7f3b67ddcd748 246 PANTHER PTHR24423 21 225 1.3E-28 T 23-04-2016 RD1_RS06885 b03fee090851eecbdcb7f3b67ddcd748 246 SUPERFAMILY SSF55874 100 228 1.06E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS06885 b03fee090851eecbdcb7f3b67ddcd748 246 SUPERFAMILY SSF47384 22 94 7.65E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS06885 b03fee090851eecbdcb7f3b67ddcd748 246 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 141 229 3.2E-14 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS06885 b03fee090851eecbdcb7f3b67ddcd748 246 PRINTS PR00344 Bacterial sensor protein C-terminal signature 172 186 4.3E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS06885 b03fee090851eecbdcb7f3b67ddcd748 246 PRINTS PR00344 Bacterial sensor protein C-terminal signature 190 200 4.3E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS06885 b03fee090851eecbdcb7f3b67ddcd748 246 PRINTS PR00344 Bacterial sensor protein C-terminal signature 205 223 4.3E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS06885 b03fee090851eecbdcb7f3b67ddcd748 246 Gene3D G3DSA:3.30.565.10 122 226 6.9E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS06885 b03fee090851eecbdcb7f3b67ddcd748 246 PANTHER PTHR24423:SF518 21 225 1.3E-28 T 23-04-2016 RD1_RS06885 b03fee090851eecbdcb7f3b67ddcd748 246 SMART SM00387 134 246 4.4E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS02670 7537eba47f432ac68e2cbb8ae3ee78ee 308 PANTHER PTHR10859 7 308 4.3E-67 T 23-04-2016 RD1_RS02670 7537eba47f432ac68e2cbb8ae3ee78ee 308 Pfam PF00535 Glycosyl transferase family 2 7 160 4.8E-28 T 23-04-2016 IPR001173 Glycosyltransferase 2-like RD1_RS02670 7537eba47f432ac68e2cbb8ae3ee78ee 308 PANTHER PTHR10859:SF49 7 308 4.3E-67 T 23-04-2016 RD1_RS02670 7537eba47f432ac68e2cbb8ae3ee78ee 308 SUPERFAMILY SSF53448 2 244 9.57E-30 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS02670 7537eba47f432ac68e2cbb8ae3ee78ee 308 Gene3D G3DSA:3.90.550.10 2 136 1.4E-20 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS18915 bab9e471f4277153c5eae3b75aaf5458 431 Gene3D G3DSA:3.50.50.60 372 423 6.8E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS18915 bab9e471f4277153c5eae3b75aaf5458 431 Gene3D G3DSA:3.50.50.60 2 174 6.8E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS18915 bab9e471f4277153c5eae3b75aaf5458 431 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 5.3E-8 T 23-04-2016 RD1_RS18915 bab9e471f4277153c5eae3b75aaf5458 431 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 128 137 5.3E-8 T 23-04-2016 RD1_RS18915 bab9e471f4277153c5eae3b75aaf5458 431 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 5.3E-8 T 23-04-2016 RD1_RS18915 bab9e471f4277153c5eae3b75aaf5458 431 PANTHER PTHR23023:SF4 2 277 2.7E-50 T 23-04-2016 RD1_RS18915 bab9e471f4277153c5eae3b75aaf5458 431 PANTHER PTHR23023:SF4 333 423 2.7E-50 T 23-04-2016 RD1_RS18915 bab9e471f4277153c5eae3b75aaf5458 431 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 9 196 1.5E-23 T 23-04-2016 RD1_RS18915 bab9e471f4277153c5eae3b75aaf5458 431 SUPERFAMILY SSF51905 4 220 1.53E-32 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS18915 bab9e471f4277153c5eae3b75aaf5458 431 Gene3D G3DSA:3.40.50.720 175 194 9.0E-4 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS18915 bab9e471f4277153c5eae3b75aaf5458 431 PANTHER PTHR23023 2 277 2.7E-50 T 23-04-2016 RD1_RS18915 bab9e471f4277153c5eae3b75aaf5458 431 PANTHER PTHR23023 333 423 2.7E-50 T 23-04-2016 RD1_RS18190 d27094cf28517a348fb24b46212cdc79 540 PANTHER PTHR24095:SF119 1 537 7.4E-228 T 23-04-2016 RD1_RS18190 d27094cf28517a348fb24b46212cdc79 540 SUPERFAMILY SSF56801 15 539 4.97E-137 T 23-04-2016 RD1_RS18190 d27094cf28517a348fb24b46212cdc79 540 ProSitePatterns PS00455 Putative AMP-binding domain signature. 188 199 - T 23-04-2016 IPR020845 AMP-binding, conserved site RD1_RS18190 d27094cf28517a348fb24b46212cdc79 540 Pfam PF00501 AMP-binding enzyme 27 444 1.2E-88 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RD1_RS18190 d27094cf28517a348fb24b46212cdc79 540 Gene3D G3DSA:3.40.50.980 199 339 4.1E-31 T 23-04-2016 RD1_RS18190 d27094cf28517a348fb24b46212cdc79 540 PANTHER PTHR24095 1 537 7.4E-228 T 23-04-2016 RD1_RS18190 d27094cf28517a348fb24b46212cdc79 540 Gene3D G3DSA:3.40.50.980 23 133 4.6E-33 T 23-04-2016 RD1_RS18190 d27094cf28517a348fb24b46212cdc79 540 Gene3D G3DSA:3.40.50.980 173 198 4.6E-33 T 23-04-2016 RD1_RS18190 d27094cf28517a348fb24b46212cdc79 540 Pfam PF13193 AMP-binding enzyme C-terminal domain 453 527 3.2E-17 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RD1_RS18190 d27094cf28517a348fb24b46212cdc79 540 Gene3D G3DSA:3.30.300.30 439 537 1.3E-29 T 23-04-2016 RD1_RS18190 d27094cf28517a348fb24b46212cdc79 540 Gene3D G3DSA:2.30.38.10 362 438 1.9E-19 T 23-04-2016 RD1_RS17220 cbaf5eb8a444896084caff029e8e63ba 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.7E-19 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS17220 cbaf5eb8a444896084caff029e8e63ba 298 PANTHER PTHR30126 5 291 1.1E-54 T 23-04-2016 RD1_RS17220 cbaf5eb8a444896084caff029e8e63ba 298 Gene3D G3DSA:3.40.190.10 184 258 2.3E-11 T 23-04-2016 RD1_RS17220 cbaf5eb8a444896084caff029e8e63ba 298 SUPERFAMILY SSF53850 94 297 1.18E-28 T 23-04-2016 RD1_RS17220 cbaf5eb8a444896084caff029e8e63ba 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 9.5E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS17220 cbaf5eb8a444896084caff029e8e63ba 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 9.5E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS17220 cbaf5eb8a444896084caff029e8e63ba 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 9.5E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS17220 cbaf5eb8a444896084caff029e8e63ba 298 Pfam PF03466 LysR substrate binding domain 92 296 1.2E-26 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS17220 cbaf5eb8a444896084caff029e8e63ba 298 Gene3D G3DSA:3.40.190.10 110 183 1.2E-9 T 23-04-2016 RD1_RS17220 cbaf5eb8a444896084caff029e8e63ba 298 SUPERFAMILY SSF46785 6 90 2.51E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS17220 cbaf5eb8a444896084caff029e8e63ba 298 Gene3D G3DSA:1.10.10.10 6 89 1.5E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS02390 6802981eb058adb4c714c9be74baccc3 212 Gene3D G3DSA:1.10.357.10 70 206 7.5E-36 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RD1_RS02390 6802981eb058adb4c714c9be74baccc3 212 Gene3D G3DSA:1.10.10.60 3 46 2.9E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS02390 6802981eb058adb4c714c9be74baccc3 212 Gene3D G3DSA:1.10.10.60 47 69 6.9E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS02390 6802981eb058adb4c714c9be74baccc3 212 SUPERFAMILY SSF46689 4 85 2.39E-19 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS02390 6802981eb058adb4c714c9be74baccc3 212 PANTHER PTHR30328 4 210 6.2E-55 T 23-04-2016 RD1_RS02390 6802981eb058adb4c714c9be74baccc3 212 SUPERFAMILY SSF48498 84 208 1.57E-36 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RD1_RS02390 6802981eb058adb4c714c9be74baccc3 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 1.2E-15 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS02390 6802981eb058adb4c714c9be74baccc3 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 2.5E-7 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS02390 6802981eb058adb4c714c9be74baccc3 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 2.5E-7 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS02390 6802981eb058adb4c714c9be74baccc3 212 PANTHER PTHR30328:SF16 4 210 6.2E-55 T 23-04-2016 RD1_RS11945 aaa95ed3f01066fa4ea2314a80351455 152 PANTHER PTHR30272 1 149 1.9E-55 T 23-04-2016 RD1_RS11945 aaa95ed3f01066fa4ea2314a80351455 152 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 9 149 1.5E-53 T 23-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RD1_RS11945 aaa95ed3f01066fa4ea2314a80351455 152 Pfam PF07977 FabA-like domain 17 143 6.9E-32 T 23-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RD1_RS11945 aaa95ed3f01066fa4ea2314a80351455 152 Gene3D G3DSA:3.10.129.10 3 149 9.1E-53 T 23-04-2016 IPR029069 HotDog domain RD1_RS11945 aaa95ed3f01066fa4ea2314a80351455 152 SUPERFAMILY SSF54637 8 149 5.9E-44 T 23-04-2016 IPR029069 HotDog domain RD1_RS11945 aaa95ed3f01066fa4ea2314a80351455 152 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 8 151 31.616 T 23-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RD1_RS13485 bb9f5562452ee7b714aee31e294ae918 322 Gene3D G3DSA:3.40.190.100 112 252 2.1E-28 T 23-04-2016 RD1_RS13485 bb9f5562452ee7b714aee31e294ae918 322 PANTHER PTHR30177 28 220 1.4E-17 T 23-04-2016 RD1_RS13485 bb9f5562452ee7b714aee31e294ae918 322 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 27 299 9.1E-53 T 23-04-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 RD1_RS13485 bb9f5562452ee7b714aee31e294ae918 322 PANTHER PTHR30177:SF14 28 220 1.4E-17 T 23-04-2016 RD1_RS13485 bb9f5562452ee7b714aee31e294ae918 322 SUPERFAMILY SSF53850 20 315 1.63E-64 T 23-04-2016 RD1_RS13485 bb9f5562452ee7b714aee31e294ae918 322 Gene3D G3DSA:3.40.190.10 23 109 2.7E-22 T 23-04-2016 RD1_RS13485 bb9f5562452ee7b714aee31e294ae918 322 Gene3D G3DSA:3.40.190.10 253 311 2.7E-22 T 23-04-2016 RD1_RS02795 040846f19f9cf0e37d57369724a990ee 251 PANTHER PTHR10672 11 226 1.1E-50 T 23-04-2016 RD1_RS02795 040846f19f9cf0e37d57369724a990ee 251 SMART SM01007 17 200 8.5E-49 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS02795 040846f19f9cf0e37d57369724a990ee 251 Gene3D G3DSA:3.40.225.10 10 227 4.2E-52 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS02795 040846f19f9cf0e37d57369724a990ee 251 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 18 200 4.2E-43 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS02795 040846f19f9cf0e37d57369724a990ee 251 SUPERFAMILY SSF53639 9 231 3.14E-55 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS08645 823264954a56ef7b6b7364a277b46a48 170 Pfam PF13463 Winged helix DNA-binding domain 55 119 4.7E-16 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS08645 823264954a56ef7b6b7364a277b46a48 170 SMART SM00347 47 151 2.5E-10 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS08645 823264954a56ef7b6b7364a277b46a48 170 SUPERFAMILY SSF46785 20 162 1.02E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS08645 823264954a56ef7b6b7364a277b46a48 170 Gene3D G3DSA:1.10.10.10 12 166 3.3E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS15650 2a9ff1c6d50b4b594741059c98a9aef7 202 PANTHER PTHR19136 6 201 1.7E-35 T 23-04-2016 RD1_RS15650 2a9ff1c6d50b4b594741059c98a9aef7 202 PANTHER PTHR19136:SF81 6 201 1.7E-35 T 23-04-2016 RD1_RS15650 2a9ff1c6d50b4b594741059c98a9aef7 202 SUPERFAMILY SSF53448 5 195 6.02E-29 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS15650 2a9ff1c6d50b4b594741059c98a9aef7 202 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 2 198 27.291 T 23-04-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 RD1_RS15650 2a9ff1c6d50b4b594741059c98a9aef7 202 Gene3D G3DSA:3.90.550.10 6 201 2.0E-51 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS15650 2a9ff1c6d50b4b594741059c98a9aef7 202 Pfam PF12804 MobA-like NTP transferase domain 6 165 3.9E-31 T 23-04-2016 IPR025877 MobA-like NTP transferase RD1_RS15650 2a9ff1c6d50b4b594741059c98a9aef7 202 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 6 196 1.9E-59 T 23-04-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 RD1_RS03865 ab75192ca01cc99d900d72c8740e3ed7 478 SUPERFAMILY SSF53720 3 473 3.53E-161 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS03865 ab75192ca01cc99d900d72c8740e3ed7 478 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 246 253 - T 23-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 RD1_RS03865 ab75192ca01cc99d900d72c8740e3ed7 478 PANTHER PTHR11699 5 474 4.4E-232 T 23-04-2016 RD1_RS03865 ab75192ca01cc99d900d72c8740e3ed7 478 Gene3D G3DSA:3.40.605.10 2 260 4.3E-94 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RD1_RS03865 ab75192ca01cc99d900d72c8740e3ed7 478 Pfam PF00171 Aldehyde dehydrogenase family 12 472 2.4E-165 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RD1_RS03865 ab75192ca01cc99d900d72c8740e3ed7 478 Gene3D G3DSA:3.40.309.10 261 447 2.3E-67 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RD1_RS03865 ab75192ca01cc99d900d72c8740e3ed7 478 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 23-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RD1_RS03865 ab75192ca01cc99d900d72c8740e3ed7 478 PANTHER PTHR11699:SF200 5 474 4.4E-232 T 23-04-2016 RD1_RS15195 b8fefd2c39f6c48e9f85aed96621b91b 335 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 5 335 2.5E-109 T 23-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS15195 b8fefd2c39f6c48e9f85aed96621b91b 335 Pfam PF13353 4Fe-4S single cluster domain 21 126 2.6E-8 T 23-04-2016 RD1_RS15195 b8fefd2c39f6c48e9f85aed96621b91b 335 Pfam PF04055 Radical SAM superfamily 18 179 3.3E-21 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RD1_RS15195 b8fefd2c39f6c48e9f85aed96621b91b 335 SUPERFAMILY SSF102114 4 292 4.71E-72 T 23-04-2016 RD1_RS15195 b8fefd2c39f6c48e9f85aed96621b91b 335 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 20 31 - T 23-04-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS15195 b8fefd2c39f6c48e9f85aed96621b91b 335 SMART SM00729 14 220 3.2E-4 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RD1_RS15195 b8fefd2c39f6c48e9f85aed96621b91b 335 PANTHER PTHR22960 1 285 1.5E-105 T 23-04-2016 RD1_RS15195 b8fefd2c39f6c48e9f85aed96621b91b 335 Pfam PF06463 Molybdenum Cofactor Synthesis C 187 314 5.9E-38 T 23-04-2016 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS15195 b8fefd2c39f6c48e9f85aed96621b91b 335 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 5 335 38.58 T 23-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS15195 b8fefd2c39f6c48e9f85aed96621b91b 335 Gene3D G3DSA:3.20.20.70 3 311 5.8E-69 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS00440 fe35f91ca472ad54ebfc0936cddd17bd 248 PANTHER PTHR24321 1 248 8.2E-51 T 23-04-2016 RD1_RS00440 fe35f91ca472ad54ebfc0936cddd17bd 248 PANTHER PTHR24321:SF6 1 248 8.2E-51 T 23-04-2016 RD1_RS00440 fe35f91ca472ad54ebfc0936cddd17bd 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 1.2E-62 T 23-04-2016 RD1_RS00440 fe35f91ca472ad54ebfc0936cddd17bd 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 4.2E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS00440 fe35f91ca472ad54ebfc0936cddd17bd 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 4.2E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS00440 fe35f91ca472ad54ebfc0936cddd17bd 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 4.2E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS00440 fe35f91ca472ad54ebfc0936cddd17bd 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 4.2E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS00440 fe35f91ca472ad54ebfc0936cddd17bd 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 4.2E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS00440 fe35f91ca472ad54ebfc0936cddd17bd 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.2E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS00440 fe35f91ca472ad54ebfc0936cddd17bd 248 SUPERFAMILY SSF51735 5 247 2.58E-80 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00440 fe35f91ca472ad54ebfc0936cddd17bd 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.9E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS00440 fe35f91ca472ad54ebfc0936cddd17bd 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.9E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS00440 fe35f91ca472ad54ebfc0936cddd17bd 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.9E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS00440 fe35f91ca472ad54ebfc0936cddd17bd 248 Gene3D G3DSA:3.40.50.720 1 248 3.0E-86 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS12715 1f6af35bcbeeeb9b798add6629e7cf29 152 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 139 3.4E-26 T 23-04-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain RD1_RS12715 1f6af35bcbeeeb9b798add6629e7cf29 152 Gene3D G3DSA:3.30.530.20 1 146 4.8E-53 T 23-04-2016 IPR023393 START-like domain RD1_RS12715 1f6af35bcbeeeb9b798add6629e7cf29 152 SUPERFAMILY SSF55961 1 148 4.87E-36 T 23-04-2016 RD1_RS12715 1f6af35bcbeeeb9b798add6629e7cf29 152 PANTHER PTHR12901 1 146 7.3E-47 T 23-04-2016 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 Gene3D G3DSA:1.20.210.10 32 513 5.5E-211 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 21 546 8.5E-206 T 23-04-2016 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 PANTHER PTHR10422:SF18 6 549 1.8E-280 T 23-04-2016 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 PANTHER PTHR10422 6 549 1.8E-280 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 111 135 4.2E-137 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 338 359 4.2E-137 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 268 289 4.2E-137 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 451 472 4.2E-137 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 314 329 4.2E-137 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 401 420 4.2E-137 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 373 391 4.2E-137 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 158 170 4.2E-137 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 83 106 4.2E-137 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 188 206 4.2E-137 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 20 45 4.2E-137 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 PRINTS PR01165 Cytochrome c oxidase subunit I signature 217 236 4.2E-137 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 270 324 - T 23-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 29 493 4.3E-150 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS09100 571e96e76b763ba1f6941644ba140be8 556 SUPERFAMILY SSF81442 17 547 1.44E-207 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RD1_RS02620 21d88b81b5c05d30025a6aca3c98729a 447 PANTHER PTHR19271:SF9 329 445 1.6E-183 T 23-04-2016 RD1_RS02620 21d88b81b5c05d30025a6aca3c98729a 447 PANTHER PTHR19271:SF9 9 310 1.6E-183 T 23-04-2016 RD1_RS02620 21d88b81b5c05d30025a6aca3c98729a 447 SUPERFAMILY SSF81648 286 422 4.36E-35 T 23-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 RD1_RS02620 21d88b81b5c05d30025a6aca3c98729a 447 PANTHER PTHR19271 329 445 1.6E-183 T 23-04-2016 RD1_RS02620 21d88b81b5c05d30025a6aca3c98729a 447 PANTHER PTHR19271 9 310 1.6E-183 T 23-04-2016 RD1_RS02620 21d88b81b5c05d30025a6aca3c98729a 447 Gene3D G3DSA:1.20.810.10 20 421 1.6E-159 T 23-04-2016 IPR027387 Cytochrome b/b6-like domain RD1_RS02620 21d88b81b5c05d30025a6aca3c98729a 447 SUPERFAMILY SSF81342 20 284 8.48E-101 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RD1_RS02620 21d88b81b5c05d30025a6aca3c98729a 447 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 282 401 5.6E-38 T 23-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 RD1_RS02620 21d88b81b5c05d30025a6aca3c98729a 447 Pfam PF00033 Cytochrome b/b6/petB 35 220 1.5E-69 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RD1_RS02620 21d88b81b5c05d30025a6aca3c98729a 447 PIRSF PIRSF038885 7 432 1.3E-189 T 23-04-2016 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 RD1_RS16675 ca1e52cd084b70e2430fe31f83c76284 151 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 3 144 2.9E-34 T 23-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RD1_RS16675 ca1e52cd084b70e2430fe31f83c76284 151 PANTHER PTHR30345 1 150 1.1E-46 T 23-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RD1_RS16675 ca1e52cd084b70e2430fe31f83c76284 151 PIRSF PIRSF005384 1 148 1.1E-40 T 23-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RD1_RS16675 ca1e52cd084b70e2430fe31f83c76284 151 Pfam PF02502 Ribose/Galactose Isomerase 3 141 7.7E-41 T 23-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RD1_RS16675 ca1e52cd084b70e2430fe31f83c76284 151 SUPERFAMILY SSF89623 1 146 1.03E-42 T 23-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RD1_RS16675 ca1e52cd084b70e2430fe31f83c76284 151 Gene3D G3DSA:3.40.1400.10 1 148 3.0E-46 T 23-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RD1_RS03815 e2fc5285f4bca150704f2bf5a9711804 464 Gene3D G3DSA:3.50.50.60 48 148 2.5E-43 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03815 e2fc5285f4bca150704f2bf5a9711804 464 Gene3D G3DSA:3.50.50.60 203 284 2.5E-43 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03815 e2fc5285f4bca150704f2bf5a9711804 464 Gene3D G3DSA:3.50.50.60 380 429 2.5E-43 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03815 e2fc5285f4bca150704f2bf5a9711804 464 SUPERFAMILY SSF51905 56 285 8.42E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03815 e2fc5285f4bca150704f2bf5a9711804 464 SUPERFAMILY SSF51905 380 435 8.42E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03815 e2fc5285f4bca150704f2bf5a9711804 464 PANTHER PTHR13847:SF196 51 460 2.0E-52 T 23-04-2016 RD1_RS03815 e2fc5285f4bca150704f2bf5a9711804 464 PANTHER PTHR13847 51 460 2.0E-52 T 23-04-2016 RD1_RS03815 e2fc5285f4bca150704f2bf5a9711804 464 Pfam PF01266 FAD dependent oxidoreductase 57 419 1.4E-45 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS03785 2de29fffcd4c67ead1eac769c139ab24 337 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 12 318 8.6E-60 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS03785 2de29fffcd4c67ead1eac769c139ab24 337 PANTHER PTHR10314:SF105 3 319 3.0E-92 T 23-04-2016 RD1_RS03785 2de29fffcd4c67ead1eac769c139ab24 337 SUPERFAMILY SSF53686 4 328 4.66E-90 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS03785 2de29fffcd4c67ead1eac769c139ab24 337 PIRSF PIRSF006278 1 335 7.0E-112 T 23-04-2016 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase RD1_RS03785 2de29fffcd4c67ead1eac769c139ab24 337 PANTHER PTHR10314 3 319 3.0E-92 T 23-04-2016 RD1_RS03785 2de29fffcd4c67ead1eac769c139ab24 337 TIGRFAM TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 11 327 3.2E-99 T 23-04-2016 IPR005966 D-cysteine desulfhydrase GO:0003824 KEGG: 00270+4.4.1.15 RD1_RS03785 2de29fffcd4c67ead1eac769c139ab24 337 Gene3D G3DSA:3.40.50.1100 110 330 1.7E-68 T 23-04-2016 RD1_RS03785 2de29fffcd4c67ead1eac769c139ab24 337 Gene3D G3DSA:3.40.50.1100 17 98 3.6E-5 T 23-04-2016 RD1_RS06965 f0bc0b2b248a259c226f32fb690bc630 341 PANTHER PTHR30482 16 341 4.6E-37 T 23-04-2016 RD1_RS06965 f0bc0b2b248a259c226f32fb690bc630 341 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 291 7.8E-29 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS16350 6708fa6dcca2305be71e7dd4d68ae5e7 79 Gene3D G3DSA:3.30.70.920 4 77 1.0E-21 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS16350 6708fa6dcca2305be71e7dd4d68ae5e7 79 Pfam PF01037 Lrp/AsnC ligand binding domain 7 76 1.1E-9 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS16350 6708fa6dcca2305be71e7dd4d68ae5e7 79 SUPERFAMILY SSF54909 3 78 1.47E-15 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS03610 7a5e2726d46bb2284c63bfdf3e19668c 70 Pfam PF11127 Protein of unknown function (DUF2892) 1 69 3.1E-21 T 23-04-2016 IPR021309 Protein of unknown function DUF2892 RD1_RS06395 a4449c587d59b90c8d43995aae30a004 292 Pfam PF01553 Acyltransferase 91 219 1.8E-6 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RD1_RS06395 a4449c587d59b90c8d43995aae30a004 292 SMART SM00563 100 224 0.0042 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RD1_RS06395 a4449c587d59b90c8d43995aae30a004 292 PANTHER PTHR37323 34 269 1.9E-17 T 23-04-2016 RD1_RS06395 a4449c587d59b90c8d43995aae30a004 292 PANTHER PTHR37323:SF1 34 269 1.9E-17 T 23-04-2016 RD1_RS06395 a4449c587d59b90c8d43995aae30a004 292 SUPERFAMILY SSF69593 55 287 2.48E-8 T 23-04-2016 RD1_RS09255 16580fa877ade92391a9a3f6405201c3 95 SUPERFAMILY SSF141000 2 93 1.57E-26 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RD1_RS09255 16580fa877ade92391a9a3f6405201c3 95 PANTHER PTHR15004 1 95 1.9E-25 T 23-04-2016 RD1_RS09255 16580fa877ade92391a9a3f6405201c3 95 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 3 95 7.0E-26 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RD1_RS09255 16580fa877ade92391a9a3f6405201c3 95 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 21 90 5.2E-20 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RD1_RS09255 16580fa877ade92391a9a3f6405201c3 95 PANTHER PTHR15004:SF0 1 95 1.9E-25 T 23-04-2016 RD1_RS09255 16580fa877ade92391a9a3f6405201c3 95 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 23.526 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RD1_RS07470 6149261e8ad9d43bbd12a3ea7c3edefa 251 Pfam PF01925 Sulfite exporter TauE/SafE 15 245 9.5E-28 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RD1_RS07470 6149261e8ad9d43bbd12a3ea7c3edefa 251 PANTHER PTHR30269 4 250 4.8E-15 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RD1_RS16730 78c807a994dc293189c4e9276fd6533d 369 SUPERFAMILY SSF52540 3 240 3.0E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16730 78c807a994dc293189c4e9276fd6533d 369 Gene3D G3DSA:2.40.50.100 343 357 5.0E-7 T 23-04-2016 RD1_RS16730 78c807a994dc293189c4e9276fd6533d 369 Gene3D G3DSA:2.40.50.100 239 283 5.0E-7 T 23-04-2016 RD1_RS16730 78c807a994dc293189c4e9276fd6533d 369 Pfam PF00005 ABC transporter 18 160 8.1E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS16730 78c807a994dc293189c4e9276fd6533d 369 Gene3D G3DSA:3.40.50.300 3 227 5.1E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16730 78c807a994dc293189c4e9276fd6533d 369 SMART SM00382 27 218 9.4E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS16730 78c807a994dc293189c4e9276fd6533d 369 SUPERFAMILY SSF50331 236 357 3.64E-15 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS16730 78c807a994dc293189c4e9276fd6533d 369 PANTHER PTHR24220:SF151 4 289 9.7E-101 T 23-04-2016 RD1_RS16730 78c807a994dc293189c4e9276fd6533d 369 PANTHER PTHR24220 4 289 9.7E-101 T 23-04-2016 RD1_RS17115 d41b98f369807d31733502acb4e1f842 760 Gene3D G3DSA:3.30.70.100 619 708 1.3E-6 T 23-04-2016 RD1_RS17115 d41b98f369807d31733502acb4e1f842 760 SUPERFAMILY SSF82689 616 712 2.22E-12 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RD1_RS17115 d41b98f369807d31733502acb4e1f842 760 PANTHER PTHR30460 404 741 4.1E-72 T 23-04-2016 RD1_RS17115 d41b98f369807d31733502acb4e1f842 760 SUPERFAMILY SSF50182 553 616 4.58E-12 T 23-04-2016 IPR010920 LSM domain RD1_RS17115 d41b98f369807d31733502acb4e1f842 760 Pfam PF00924 Mechanosensitive ion channel 513 710 1.2E-41 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RD1_RS17115 d41b98f369807d31733502acb4e1f842 760 SUPERFAMILY SSF82861 450 551 4.32E-11 T 23-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RD1_RS17115 d41b98f369807d31733502acb4e1f842 760 Gene3D G3DSA:2.30.30.60 569 615 2.3E-12 T 23-04-2016 RD1_RS17115 d41b98f369807d31733502acb4e1f842 760 PANTHER PTHR30460:SF0 404 741 4.1E-72 T 23-04-2016 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 SUPERFAMILY SSF82866 908 931 5.1E-40 T 23-04-2016 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 SUPERFAMILY SSF82866 995 1202 5.1E-40 T 23-04-2016 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 Gene3D G3DSA:3.30.70.1430 41 141 8.3E-18 T 23-04-2016 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 Gene3D G3DSA:3.30.2090.10 826 904 0.001 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 Gene3D G3DSA:3.30.2090.10 182 266 5.4E-13 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 PANTHER PTHR32063 1 497 2.4E-230 T 23-04-2016 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 PANTHER PTHR32063 606 970 2.4E-230 T 23-04-2016 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 PANTHER PTHR32063 1022 1249 2.4E-230 T 23-04-2016 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 2.0E-27 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 PRINTS PR00702 Acriflavin resistance protein family signature 358 379 2.0E-27 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 2.0E-27 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 2.0E-27 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 2.0E-27 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 2.0E-27 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 SUPERFAMILY SSF82693 266 318 7.32E-12 T 23-04-2016 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 SUPERFAMILY SSF82693 138 180 7.32E-12 T 23-04-2016 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 Pfam PF00873 AcrB/AcrD/AcrF family 15 488 2.5E-87 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 Pfam PF00873 AcrB/AcrD/AcrF family 616 934 4.2E-22 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 Pfam PF00873 AcrB/AcrD/AcrF family 1013 1199 1.6E-31 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 SUPERFAMILY SSF82714 183 264 1.05E-12 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 SUPERFAMILY SSF82866 289 489 3.4E-37 T 23-04-2016 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 SUPERFAMILY SSF82693 41 135 7.32E-17 T 23-04-2016 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 Gene3D G3DSA:1.10.3850.10 271 487 4.6E-46 T 23-04-2016 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 Gene3D G3DSA:1.10.3850.10 998 1202 8.9E-48 T 23-04-2016 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 PANTHER PTHR32063:SF31 1 497 2.4E-230 T 23-04-2016 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 PANTHER PTHR32063:SF31 606 970 2.4E-230 T 23-04-2016 RD1_RS08200 0fb21c9ee0d4694268ff03fade03d419 1265 PANTHER PTHR32063:SF31 1022 1249 2.4E-230 T 23-04-2016 RD1_RS10085 8cbe5a6f1a671da66ee4aa80f2d8431c 245 SMART SM00382 30 217 2.7E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS10085 8cbe5a6f1a671da66ee4aa80f2d8431c 245 Pfam PF00005 ABC transporter 22 169 2.3E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS10085 8cbe5a6f1a671da66ee4aa80f2d8431c 245 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS10085 8cbe5a6f1a671da66ee4aa80f2d8431c 245 SUPERFAMILY SSF52540 6 239 1.1E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10085 8cbe5a6f1a671da66ee4aa80f2d8431c 245 PANTHER PTHR24220:SF447 7 244 4.6E-122 T 23-04-2016 RD1_RS10085 8cbe5a6f1a671da66ee4aa80f2d8431c 245 Gene3D G3DSA:3.40.50.300 6 241 1.7E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10085 8cbe5a6f1a671da66ee4aa80f2d8431c 245 PANTHER PTHR24220 7 244 4.6E-122 T 23-04-2016 RD1_RS10085 8cbe5a6f1a671da66ee4aa80f2d8431c 245 PIRSF PIRSF039085 2 245 8.1E-104 T 23-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RD1_RS16485 1f9ce6a46b68c156d8991df18daac206 675 Pfam PF01968 Hydantoinase/oxoprolinase 200 487 4.6E-83 T 23-04-2016 IPR002821 Hydantoinase/oxoprolinase GO:0016787 RD1_RS16485 1f9ce6a46b68c156d8991df18daac206 675 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 5 177 1.0E-46 T 23-04-2016 IPR008040 Hydantoinaseoxoprolinase, N-terminal RD1_RS16485 1f9ce6a46b68c156d8991df18daac206 675 PANTHER PTHR11365 3 675 3.2E-184 T 23-04-2016 RD1_RS16485 1f9ce6a46b68c156d8991df18daac206 675 SUPERFAMILY SSF53067 258 334 1.36E-6 T 23-04-2016 RD1_RS16485 1f9ce6a46b68c156d8991df18daac206 675 SUPERFAMILY SSF53067 384 481 1.36E-6 T 23-04-2016 RD1_RS16485 1f9ce6a46b68c156d8991df18daac206 675 SUPERFAMILY SSF53067 6 76 1.36E-6 T 23-04-2016 RD1_RS09160 4b605d7e709eeb94fd92a904b2231774 531 Gene3D G3DSA:3.40.190.10 179 303 1.6E-20 T 23-04-2016 RD1_RS09160 4b605d7e709eeb94fd92a904b2231774 531 PANTHER PTHR30290 10 520 3.9E-67 T 23-04-2016 RD1_RS09160 4b605d7e709eeb94fd92a904b2231774 531 Gene3D G3DSA:3.90.76.10 87 178 3.7E-18 T 23-04-2016 RD1_RS09160 4b605d7e709eeb94fd92a904b2231774 531 PIRSF PIRSF002741 16 525 5.4E-56 T 23-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RD1_RS09160 4b605d7e709eeb94fd92a904b2231774 531 Gene3D G3DSA:3.10.105.10 304 491 4.2E-31 T 23-04-2016 RD1_RS09160 4b605d7e709eeb94fd92a904b2231774 531 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 98 448 1.4E-55 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain RD1_RS09160 4b605d7e709eeb94fd92a904b2231774 531 SUPERFAMILY SSF53850 47 518 1.43E-95 T 23-04-2016 RD1_RS04395 4492df40c3b91029c27bf02760fd9345 190 PANTHER PTHR35446:SF2 18 190 1.9E-63 T 23-04-2016 RD1_RS04395 4492df40c3b91029c27bf02760fd9345 190 SUPERFAMILY SSF69118 8 188 9.95E-56 T 23-04-2016 IPR029032 AhpD-like RD1_RS04395 4492df40c3b91029c27bf02760fd9345 190 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 65 113 1.5E-13 T 23-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RD1_RS04395 4492df40c3b91029c27bf02760fd9345 190 Pfam PF02627 Carboxymuconolactone decarboxylase family 51 114 2.5E-10 T 23-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RD1_RS04395 4492df40c3b91029c27bf02760fd9345 190 Gene3D G3DSA:1.20.1290.10 66 186 2.1E-37 T 23-04-2016 IPR029032 AhpD-like RD1_RS04395 4492df40c3b91029c27bf02760fd9345 190 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 9 182 2.0E-63 T 23-04-2016 IPR010195 Uncharacterised peroxidase-related RD1_RS04395 4492df40c3b91029c27bf02760fd9345 190 PANTHER PTHR35446 18 190 1.9E-63 T 23-04-2016 RD1_RS04395 4492df40c3b91029c27bf02760fd9345 190 Gene3D G3DSA:1.20.5.810 16 65 9.2E-22 T 23-04-2016 RD1_RS17330 e27595972fa610f4c735b8a0b15e9e2c 254 Pfam PF01261 Xylose isomerase-like TIM barrel 21 213 7.6E-28 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS17330 e27595972fa610f4c735b8a0b15e9e2c 254 PIRSF PIRSF006241 1 254 1.1E-80 T 23-04-2016 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 RD1_RS17330 e27595972fa610f4c735b8a0b15e9e2c 254 PANTHER PTHR12110:SF22 1 251 1.4E-76 T 23-04-2016 RD1_RS17330 e27595972fa610f4c735b8a0b15e9e2c 254 SUPERFAMILY SSF51658 1 251 1.08E-71 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS17330 e27595972fa610f4c735b8a0b15e9e2c 254 Gene3D G3DSA:3.20.20.150 1 252 9.8E-74 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS17330 e27595972fa610f4c735b8a0b15e9e2c 254 PANTHER PTHR12110 1 251 1.4E-76 T 23-04-2016 RD1_RS10115 34612d7be7f1d2fc983626aca1628264 523 SUPERFAMILY SSF54373 292 459 3.73E-14 T 23-04-2016 RD1_RS10115 34612d7be7f1d2fc983626aca1628264 523 PANTHER PTHR11552 13 522 1.2E-87 T 23-04-2016 RD1_RS10115 34612d7be7f1d2fc983626aca1628264 523 SUPERFAMILY SSF51905 458 518 2.59E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10115 34612d7be7f1d2fc983626aca1628264 523 SUPERFAMILY SSF51905 13 310 2.59E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10115 34612d7be7f1d2fc983626aca1628264 523 Gene3D G3DSA:3.50.50.60 418 517 1.9E-70 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10115 34612d7be7f1d2fc983626aca1628264 523 Gene3D G3DSA:3.50.50.60 13 142 1.9E-70 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10115 34612d7be7f1d2fc983626aca1628264 523 Gene3D G3DSA:3.50.50.60 200 306 1.9E-70 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10115 34612d7be7f1d2fc983626aca1628264 523 Pfam PF00732 GMC oxidoreductase 14 305 4.4E-18 T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS10115 34612d7be7f1d2fc983626aca1628264 523 PANTHER PTHR11552:SF139 13 522 1.2E-87 T 23-04-2016 RD1_RS10115 34612d7be7f1d2fc983626aca1628264 523 Pfam PF05199 GMC oxidoreductase 391 509 3.2E-21 T 23-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 RD1_RS18415 fd6fb96c80ebfbdade3e92520c5171f3 177 Gene3D G3DSA:3.30.70.940 3 113 4.7E-38 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 RD1_RS18415 fd6fb96c80ebfbdade3e92520c5171f3 177 Gene3D G3DSA:2.30.30.30 115 175 2.1E-29 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 RD1_RS18415 fd6fb96c80ebfbdade3e92520c5171f3 177 SMART SM00738 2 110 1.5E-34 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 RD1_RS18415 fd6fb96c80ebfbdade3e92520c5171f3 177 SUPERFAMILY SSF50104 121 175 8.53E-19 T 23-04-2016 IPR008991 Translation protein SH3-like domain RD1_RS18415 fd6fb96c80ebfbdade3e92520c5171f3 177 SMART SM00739 122 149 1.7E-4 T 23-04-2016 IPR005824 KOW RD1_RS18415 fd6fb96c80ebfbdade3e92520c5171f3 177 PANTHER PTHR30265 1 175 1.1E-62 T 23-04-2016 RD1_RS18415 fd6fb96c80ebfbdade3e92520c5171f3 177 Pfam PF00467 KOW motif 125 157 1.0E-6 T 23-04-2016 IPR005824 KOW RD1_RS18415 fd6fb96c80ebfbdade3e92520c5171f3 177 SUPERFAMILY SSF82679 3 113 6.67E-34 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 RD1_RS18415 fd6fb96c80ebfbdade3e92520c5171f3 177 PRINTS PR00338 Transcription termination factor NUSG signature 152 168 2.5E-19 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RD1_RS18415 fd6fb96c80ebfbdade3e92520c5171f3 177 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 2.5E-19 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RD1_RS18415 fd6fb96c80ebfbdade3e92520c5171f3 177 PRINTS PR00338 Transcription termination factor NUSG signature 134 149 2.5E-19 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RD1_RS18415 fd6fb96c80ebfbdade3e92520c5171f3 177 Pfam PF02357 Transcription termination factor nusG 3 107 1.8E-22 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 RD1_RS18415 fd6fb96c80ebfbdade3e92520c5171f3 177 ProSitePatterns PS01014 Transcription termination factor nusG signature. 159 168 - T 23-04-2016 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site RD1_RS18415 fd6fb96c80ebfbdade3e92520c5171f3 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 175 9.8E-65 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RD1_RS18415 fd6fb96c80ebfbdade3e92520c5171f3 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 176 22.786 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RD1_RS14605 71fc6a0e5010783f61ee437cf0bb7fef 209 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 50 184 1.7E-13 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RD1_RS14605 71fc6a0e5010783f61ee437cf0bb7fef 209 PANTHER PTHR10242 4 200 8.5E-37 T 23-04-2016 RD1_RS14605 71fc6a0e5010783f61ee437cf0bb7fef 209 Gene3D G3DSA:1.10.340.30 45 147 2.7E-25 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RD1_RS14605 71fc6a0e5010783f61ee437cf0bb7fef 209 Gene3D G3DSA:1.10.1670.10 149 198 4.3E-11 T 23-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RD1_RS14605 71fc6a0e5010783f61ee437cf0bb7fef 209 SMART SM00478 53 200 4.5E-11 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RD1_RS14605 71fc6a0e5010783f61ee437cf0bb7fef 209 SUPERFAMILY SSF48150 33 199 2.62E-37 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RD1_RS00580 e0f5c238e3b80fd76c2f6483a5015508 404 Gene3D G3DSA:3.90.1150.10 281 395 7.4E-28 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS00580 e0f5c238e3b80fd76c2f6483a5015508 404 Gene3D G3DSA:3.40.640.10 64 280 3.0E-88 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS00580 e0f5c238e3b80fd76c2f6483a5015508 404 PANTHER PTHR13693 2 396 6.5E-224 T 23-04-2016 RD1_RS00580 e0f5c238e3b80fd76c2f6483a5015508 404 SUPERFAMILY SSF53383 3 397 1.11E-109 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS00580 e0f5c238e3b80fd76c2f6483a5015508 404 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 244 253 - T 23-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 RD1_RS00580 e0f5c238e3b80fd76c2f6483a5015508 404 Pfam PF00155 Aminotransferase class I and II 46 389 1.0E-78 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS00580 e0f5c238e3b80fd76c2f6483a5015508 404 PANTHER PTHR13693:SF57 2 396 6.5E-224 T 23-04-2016 RD1_RS00580 e0f5c238e3b80fd76c2f6483a5015508 404 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 1 400 3.5E-196 T 23-04-2016 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: REACT_9431|UniPathway: UPA00251 RD1_RS07180 0b9b22d20e128cdfb921bd34cf4947e4 273 PANTHER PTHR24567 25 253 2.5E-31 T 23-04-2016 RD1_RS07180 0b9b22d20e128cdfb921bd34cf4947e4 273 SUPERFAMILY SSF46785 180 250 2.33E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07180 0b9b22d20e128cdfb921bd34cf4947e4 273 Pfam PF00027 Cyclic nucleotide-binding domain 61 146 3.0E-16 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS07180 0b9b22d20e128cdfb921bd34cf4947e4 273 Gene3D G3DSA:2.60.120.10 40 173 1.7E-23 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS07180 0b9b22d20e128cdfb921bd34cf4947e4 273 SMART SM00100 42 160 1.7E-16 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS07180 0b9b22d20e128cdfb921bd34cf4947e4 273 Pfam PF13545 Crp-like helix-turn-helix domain 180 248 1.1E-10 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RD1_RS07180 0b9b22d20e128cdfb921bd34cf4947e4 273 Gene3D G3DSA:1.10.10.10 180 252 9.5E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07180 0b9b22d20e128cdfb921bd34cf4947e4 273 SUPERFAMILY SSF51206 38 173 1.09E-26 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 PANTHER PTHR11922:SF7 1 187 2.7E-81 T 23-04-2016 RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 SUPERFAMILY SSF52317 1 189 3.85E-55 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 PRINTS PR00097 Anthranilate synthase component II signature 120 132 1.1E-33 T 23-04-2016 RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 PRINTS PR00097 Anthranilate synthase component II signature 75 86 1.1E-33 T 23-04-2016 RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.1E-33 T 23-04-2016 RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 PRINTS PR00097 Anthranilate synthase component II signature 47 56 1.1E-33 T 23-04-2016 RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 PRINTS PR00097 Anthranilate synthase component II signature 100 108 1.1E-33 T 23-04-2016 RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 PRINTS PR00097 Anthranilate synthase component II signature 165 178 1.1E-33 T 23-04-2016 RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 75 86 2.3E-13 T 23-04-2016 RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 2.3E-13 T 23-04-2016 RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 165 178 2.3E-13 T 23-04-2016 RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 187 1.2E-70 T 23-04-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 Gene3D G3DSA:3.40.50.880 2 189 1.9E-65 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 PANTHER PTHR11922 1 187 2.7E-81 T 23-04-2016 RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 75 91 6.3E-8 T 23-04-2016 RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 6.3E-8 T 23-04-2016 RD1_RS14730 bee6d59e12ba64bf5a78ba6556252cca 193 Pfam PF00117 Glutamine amidotransferase class-I 3 187 5.8E-54 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RD1_RS08405 53b5f04964a7325a02f17b97c80a6804 185 SUPERFAMILY SSF48452 65 172 3.8E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS08405 53b5f04964a7325a02f17b97c80a6804 185 SMART SM00028 133 166 2.1 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS08405 53b5f04964a7325a02f17b97c80a6804 185 SMART SM00028 65 98 180.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS08405 53b5f04964a7325a02f17b97c80a6804 185 SMART SM00028 99 132 0.0018 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS08405 53b5f04964a7325a02f17b97c80a6804 185 Gene3D G3DSA:1.25.40.10 66 172 9.6E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS08405 53b5f04964a7325a02f17b97c80a6804 185 Pfam PF14559 Tetratricopeptide repeat 110 175 1.2E-5 T 23-04-2016 RD1_RS18330 c6cbb6c0d1b5ce60edc0d86a7c840a53 264 Gene3D G3DSA:1.10.3470.10 42 249 1.4E-5 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RD1_RS18330 c6cbb6c0d1b5ce60edc0d86a7c840a53 264 SUPERFAMILY SSF81345 3 253 6.93E-38 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RD1_RS18330 c6cbb6c0d1b5ce60edc0d86a7c840a53 264 PANTHER PTHR30477:SF0 1 263 6.5E-66 T 23-04-2016 RD1_RS18330 c6cbb6c0d1b5ce60edc0d86a7c840a53 264 PANTHER PTHR30477 1 263 6.5E-66 T 23-04-2016 RD1_RS18330 c6cbb6c0d1b5ce60edc0d86a7c840a53 264 Pfam PF00950 ABC 3 transport family 4 256 2.5E-68 T 23-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 RD1_RS18205 ad38d2bf27981e35991a51820ffc4f85 407 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 393 3.1E-114 T 23-04-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 RD1_RS18205 ad38d2bf27981e35991a51820ffc4f85 407 SUPERFAMILY SSF53649 237 398 6.15E-68 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RD1_RS18205 ad38d2bf27981e35991a51820ffc4f85 407 SUPERFAMILY SSF53649 3 117 6.15E-68 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RD1_RS18205 ad38d2bf27981e35991a51820ffc4f85 407 Hamap MF_00740 Phosphopentomutase [deoB]. 1 405 43.351 T 23-04-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 RD1_RS18205 ad38d2bf27981e35991a51820ffc4f85 407 SUPERFAMILY SSF143856 120 236 3.14E-44 T 23-04-2016 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 RD1_RS18205 ad38d2bf27981e35991a51820ffc4f85 407 Gene3D G3DSA:3.30.70.1250 118 236 8.4E-44 T 23-04-2016 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 RD1_RS18205 ad38d2bf27981e35991a51820ffc4f85 407 PANTHER PTHR21110 2 398 1.7E-105 T 23-04-2016 RD1_RS18205 ad38d2bf27981e35991a51820ffc4f85 407 Gene3D G3DSA:3.40.720.10 2 117 2.8E-62 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RD1_RS18205 ad38d2bf27981e35991a51820ffc4f85 407 Gene3D G3DSA:3.40.720.10 240 398 2.8E-62 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RD1_RS18205 ad38d2bf27981e35991a51820ffc4f85 407 PIRSF PIRSF001491 1 401 1.8E-134 T 23-04-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180|UniPathway: UPA00087 RD1_RS18205 ad38d2bf27981e35991a51820ffc4f85 407 PANTHER PTHR21110:SF0 2 398 1.7E-105 T 23-04-2016 RD1_RS18205 ad38d2bf27981e35991a51820ffc4f85 407 Pfam PF01676 Metalloenzyme superfamily 3 386 1.3E-30 T 23-04-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 RD1_RS13405 8a8f2a43748c5f323366a5c38ec8ac9f 234 SUPERFAMILY SSF161098 6 221 9.55E-32 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13405 8a8f2a43748c5f323366a5c38ec8ac9f 234 PANTHER PTHR30183:SF4 1 231 2.7E-84 T 23-04-2016 RD1_RS13405 8a8f2a43748c5f323366a5c38ec8ac9f 234 Gene3D G3DSA:1.10.3720.10 17 231 9.6E-28 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13405 8a8f2a43748c5f323366a5c38ec8ac9f 234 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 45 226 2.6E-10 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13405 8a8f2a43748c5f323366a5c38ec8ac9f 234 PANTHER PTHR30183 1 231 2.7E-84 T 23-04-2016 RD1_RS18050 28bb9c6c8b666c2bbee4bcca6dfa3d50 322 SUPERFAMILY SSF54427 8 151 4.13E-26 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS18050 28bb9c6c8b666c2bbee4bcca6dfa3d50 322 Gene3D G3DSA:3.10.450.50 21 147 5.2E-8 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS18050 28bb9c6c8b666c2bbee4bcca6dfa3d50 322 Gene3D G3DSA:3.10.450.50 221 286 9.9E-6 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS18050 28bb9c6c8b666c2bbee4bcca6dfa3d50 322 SUPERFAMILY SSF54427 192 317 1.41E-22 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS18050 28bb9c6c8b666c2bbee4bcca6dfa3d50 322 Pfam PF07366 SnoaL-like polyketide cyclase 19 142 5.9E-7 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RD1_RS16270 03bf8abe2cac1ca2f1f3f5bdbf64c157 512 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 25 92 4.2E-19 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16270 03bf8abe2cac1ca2f1f3f5bdbf64c157 512 PANTHER PTHR15184 1 496 0.0 T 23-04-2016 RD1_RS16270 03bf8abe2cac1ca2f1f3f5bdbf64c157 512 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 381 507 4.7E-44 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16270 03bf8abe2cac1ca2f1f3f5bdbf64c157 512 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 365 374 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16270 03bf8abe2cac1ca2f1f3f5bdbf64c157 512 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 374 1.4E-71 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16270 03bf8abe2cac1ca2f1f3f5bdbf64c157 512 Gene3D G3DSA:2.40.30.20 3 92 1.0E-41 T 23-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16270 03bf8abe2cac1ca2f1f3f5bdbf64c157 512 Gene3D G3DSA:1.20.150.20 383 511 3.4E-51 T 23-04-2016 RD1_RS16270 03bf8abe2cac1ca2f1f3f5bdbf64c157 512 Gene3D G3DSA:3.40.50.300 94 381 4.8E-120 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16270 03bf8abe2cac1ca2f1f3f5bdbf64c157 512 SUPERFAMILY SSF47917 383 511 3.4E-43 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16270 03bf8abe2cac1ca2f1f3f5bdbf64c157 512 SUPERFAMILY SSF50615 10 94 4.71E-31 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16270 03bf8abe2cac1ca2f1f3f5bdbf64c157 512 PANTHER PTHR15184:SF3 1 496 0.0 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16270 03bf8abe2cac1ca2f1f3f5bdbf64c157 512 PIRSF PIRSF039088 1 512 7.3E-274 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16270 03bf8abe2cac1ca2f1f3f5bdbf64c157 512 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 511 1.5E-241 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS16270 03bf8abe2cac1ca2f1f3f5bdbf64c157 512 SUPERFAMILY SSF52540 96 380 6.98E-98 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16270 03bf8abe2cac1ca2f1f3f5bdbf64c157 512 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.586 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RD1_RS04280 056e720912710f8caf4be5aa2f5c6e87 215 Pfam PF07509 Protein of unknown function (DUF1523) 5 176 1.8E-69 T 23-04-2016 IPR011088 Bacteriophage phiNM3, A0EWY4 RD1_RS01030 2952327e9799208229e0125123896084 367 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 129 3.8E-21 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RD1_RS01030 2952327e9799208229e0125123896084 367 PANTHER PTHR22604:SF123 1 366 6.2E-80 T 23-04-2016 RD1_RS01030 2952327e9799208229e0125123896084 367 SUPERFAMILY SSF55347 136 298 1.05E-32 T 23-04-2016 RD1_RS01030 2952327e9799208229e0125123896084 367 SUPERFAMILY SSF51735 4 158 8.41E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS01030 2952327e9799208229e0125123896084 367 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 142 244 1.7E-7 T 23-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS01030 2952327e9799208229e0125123896084 367 Gene3D G3DSA:3.30.360.10 316 365 2.5E-39 T 23-04-2016 RD1_RS01030 2952327e9799208229e0125123896084 367 Gene3D G3DSA:3.30.360.10 150 268 2.5E-39 T 23-04-2016 RD1_RS01030 2952327e9799208229e0125123896084 367 PANTHER PTHR22604 1 366 6.2E-80 T 23-04-2016 RD1_RS01030 2952327e9799208229e0125123896084 367 Gene3D G3DSA:3.40.50.720 1 149 2.4E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11600 17d3bb1150d2d1d7482668cb72d16176 304 Gene3D G3DSA:3.20.20.70 7 299 1.7E-113 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS11600 17d3bb1150d2d1d7482668cb72d16176 304 PANTHER PTHR37418:SF2 6 92 1.0E-116 T 23-04-2016 RD1_RS11600 17d3bb1150d2d1d7482668cb72d16176 304 PANTHER PTHR37418:SF2 112 300 1.0E-116 T 23-04-2016 RD1_RS11600 17d3bb1150d2d1d7482668cb72d16176 304 Pfam PF05853 beta-keto acid cleavage enzyme 9 297 1.5E-97 T 23-04-2016 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24|UniPathway: UPA00870 RD1_RS11600 17d3bb1150d2d1d7482668cb72d16176 304 PANTHER PTHR37418 6 92 1.0E-116 T 23-04-2016 RD1_RS11600 17d3bb1150d2d1d7482668cb72d16176 304 PANTHER PTHR37418 112 300 1.0E-116 T 23-04-2016 RD1_RS12005 e056bf0711a84b3f7d663b6ffdc66d7b 128 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 62 115 4.0E-12 T 23-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 RD1_RS12005 e056bf0711a84b3f7d663b6ffdc66d7b 128 SUPERFAMILY SSF141734 15 120 7.06E-49 T 23-04-2016 RD1_RS12005 e056bf0711a84b3f7d663b6ffdc66d7b 128 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 39 112 3.1E-35 T 23-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 RD1_RS12005 e056bf0711a84b3f7d663b6ffdc66d7b 128 PANTHER PTHR21256 3 125 3.7E-60 T 23-04-2016 RD1_RS12005 e056bf0711a84b3f7d663b6ffdc66d7b 128 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 13 116 31.26 T 23-04-2016 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 RD1_RS16085 80b93967f912504fd26d7de7e792a1d3 112 SUPERFAMILY SSF50249 3 111 3.18E-32 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS16085 80b93967f912504fd26d7de7e792a1d3 112 TIGRFAM TIGR02222 chap_CsaA: export-related chaperone protein CsaA 6 111 4.9E-46 T 23-04-2016 IPR008231 Probable chaperone CsaA RD1_RS16085 80b93967f912504fd26d7de7e792a1d3 112 Pfam PF01588 Putative tRNA binding domain 14 108 1.3E-12 T 23-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 RD1_RS16085 80b93967f912504fd26d7de7e792a1d3 112 Gene3D G3DSA:2.40.50.140 2 111 2.7E-35 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS16085 80b93967f912504fd26d7de7e792a1d3 112 PANTHER PTHR11586 1 110 3.1E-33 T 23-04-2016 RD1_RS02395 f324a2c260adc5d05c917d4688eeac9a 367 SUPERFAMILY SSF50331 236 366 2.41E-22 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS02395 f324a2c260adc5d05c917d4688eeac9a 367 SUPERFAMILY SSF52540 4 242 9.98E-88 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02395 f324a2c260adc5d05c917d4688eeac9a 367 PANTHER PTHR24220:SF446 5 293 7.4E-153 T 23-04-2016 RD1_RS02395 f324a2c260adc5d05c917d4688eeac9a 367 PANTHER PTHR24220 5 293 7.4E-153 T 23-04-2016 RD1_RS02395 f324a2c260adc5d05c917d4688eeac9a 367 Gene3D G3DSA:2.40.50.100 352 366 1.6E-8 T 23-04-2016 RD1_RS02395 f324a2c260adc5d05c917d4688eeac9a 367 Gene3D G3DSA:2.40.50.100 239 286 1.6E-8 T 23-04-2016 RD1_RS02395 f324a2c260adc5d05c917d4688eeac9a 367 Pfam PF00005 ABC transporter 19 161 1.2E-33 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS02395 f324a2c260adc5d05c917d4688eeac9a 367 SMART SM00382 28 210 1.9E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS02395 f324a2c260adc5d05c917d4688eeac9a 367 Gene3D G3DSA:3.40.50.300 3 236 4.2E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02395 f324a2c260adc5d05c917d4688eeac9a 367 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS02395 f324a2c260adc5d05c917d4688eeac9a 367 Gene3D G3DSA:2.40.50.140 287 350 2.0E-7 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS09275 cb4b9a18978e9287aeece54a4fe4b60e 125 PANTHER PTHR10245 5 70 1.3E-26 T 23-04-2016 RD1_RS09275 cb4b9a18978e9287aeece54a4fe4b60e 125 PANTHER PTHR10245:SF38 5 70 1.3E-26 T 23-04-2016 RD1_RS09275 cb4b9a18978e9287aeece54a4fe4b60e 125 SMART SM00530 12 67 2.3E-11 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS09275 cb4b9a18978e9287aeece54a4fe4b60e 125 SUPERFAMILY SSF47413 5 75 2.09E-27 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS09275 cb4b9a18978e9287aeece54a4fe4b60e 125 Gene3D G3DSA:1.10.260.40 7 74 2.4E-18 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS09275 cb4b9a18978e9287aeece54a4fe4b60e 125 Pfam PF01381 Helix-turn-helix 13 66 7.6E-11 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS09805 b668e8bae5db51ad9330819292595b39 463 Pfam PF13629 Pilus formation protein N terminal region 42 111 9.9E-16 T 23-04-2016 IPR032789 Pilus formation protein, N-terminal RD1_RS09805 b668e8bae5db51ad9330819292595b39 463 PANTHER PTHR30332 39 438 4.0E-63 T 23-04-2016 RD1_RS09805 b668e8bae5db51ad9330819292595b39 463 PANTHER PTHR30332:SF1 39 438 4.0E-63 T 23-04-2016 RD1_RS09805 b668e8bae5db51ad9330819292595b39 463 PRINTS PR00811 Bacterial general secretion pathway protein D signature 178 188 1.4E-11 T 23-04-2016 IPR001775 GspD/PilQ family RD1_RS09805 b668e8bae5db51ad9330819292595b39 463 PRINTS PR00811 Bacterial general secretion pathway protein D signature 243 267 1.4E-11 T 23-04-2016 IPR001775 GspD/PilQ family RD1_RS09805 b668e8bae5db51ad9330819292595b39 463 PRINTS PR00811 Bacterial general secretion pathway protein D signature 372 390 1.4E-11 T 23-04-2016 IPR001775 GspD/PilQ family RD1_RS09805 b668e8bae5db51ad9330819292595b39 463 Pfam PF00263 Bacterial type II and III secretion system protein 247 407 1.5E-40 T 23-04-2016 IPR004846 Type II/III secretion system GO:0009306 RD1_RS13235 345102d24af1eb415e6ef93820cc2695 419 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 9 415 48.287 T 23-04-2016 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 RD1_RS13235 345102d24af1eb415e6ef93820cc2695 419 SUPERFAMILY SSF53448 370 385 1.08E-75 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS13235 345102d24af1eb415e6ef93820cc2695 419 SUPERFAMILY SSF53448 12 286 1.08E-75 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS13235 345102d24af1eb415e6ef93820cc2695 419 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 105 113 - T 23-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 RD1_RS13235 345102d24af1eb415e6ef93820cc2695 419 PANTHER PTHR22572:SF10 13 390 1.8E-150 T 23-04-2016 RD1_RS13235 345102d24af1eb415e6ef93820cc2695 419 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 13 389 6.7E-142 T 23-04-2016 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 RD1_RS13235 345102d24af1eb415e6ef93820cc2695 419 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 203 213 - T 23-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 RD1_RS13235 345102d24af1eb415e6ef93820cc2695 419 PANTHER PTHR22572 13 390 1.8E-150 T 23-04-2016 RD1_RS13235 345102d24af1eb415e6ef93820cc2695 419 Gene3D G3DSA:3.90.550.10 336 379 5.3E-70 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS13235 345102d24af1eb415e6ef93820cc2695 419 Gene3D G3DSA:3.90.550.10 14 293 5.3E-70 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS13235 345102d24af1eb415e6ef93820cc2695 419 Pfam PF00483 Nucleotidyl transferase 14 283 1.1E-63 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 RD1_RS13235 345102d24af1eb415e6ef93820cc2695 419 SUPERFAMILY SSF51161 323 402 4.12E-11 T 23-04-2016 IPR011004 Trimeric LpxA-like RD1_RS09935 fe70e964ee0d508ad1d307dd4293cb68 542 SUPERFAMILY SSF52091 430 514 2.55E-11 T 23-04-2016 IPR002645 STAS domain RD1_RS09935 fe70e964ee0d508ad1d307dd4293cb68 542 Pfam PF00916 Sulfate permease family 32 390 8.6E-49 T 23-04-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RD1_RS09935 fe70e964ee0d508ad1d307dd4293cb68 542 Gene3D G3DSA:3.30.750.24 430 514 4.7E-10 T 23-04-2016 IPR002645 STAS domain RD1_RS09935 fe70e964ee0d508ad1d307dd4293cb68 542 Pfam PF01740 STAS domain 429 516 5.4E-9 T 23-04-2016 IPR002645 STAS domain RD1_RS09935 fe70e964ee0d508ad1d307dd4293cb68 542 PANTHER PTHR11814 28 514 6.1E-165 T 23-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 RD1_RS09935 fe70e964ee0d508ad1d307dd4293cb68 542 PANTHER PTHR11814:SF76 28 514 6.1E-165 T 23-04-2016 RD1_RS07690 0366a09e13a2b2eda09d7f809de3e139 198 SUPERFAMILY SSF52141 4 190 1.34E-45 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS07690 0366a09e13a2b2eda09d7f809de3e139 198 SMART SM00987 28 185 4.3E-28 T 23-04-2016 RD1_RS07690 0366a09e13a2b2eda09d7f809de3e139 198 Gene3D G3DSA:3.40.470.10 4 192 1.4E-36 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS07690 0366a09e13a2b2eda09d7f809de3e139 198 Pfam PF03167 Uracil DNA glycosylase superfamily 30 182 4.1E-21 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS07690 0366a09e13a2b2eda09d7f809de3e139 198 SMART SM00986 28 185 4.3E-28 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS07690 0366a09e13a2b2eda09d7f809de3e139 198 PANTHER PTHR42160 1 195 3.1E-63 T 23-04-2016 RD1_RS07690 0366a09e13a2b2eda09d7f809de3e139 198 PANTHER PTHR42160:SF1 1 195 3.1E-63 T 23-04-2016 RD1_RS14675 52ecee94911157ba24b5eec4beb15dcb 168 SUPERFAMILY SSF50249 93 159 1.18E-14 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS14675 52ecee94911157ba24b5eec4beb15dcb 168 PRINTS PR00050 Cold shock protein signature 24 33 1.9E-8 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS14675 52ecee94911157ba24b5eec4beb15dcb 168 PRINTS PR00050 Cold shock protein signature 39 57 1.9E-8 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS14675 52ecee94911157ba24b5eec4beb15dcb 168 PRINTS PR00050 Cold shock protein signature 3 18 1.9E-8 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS14675 52ecee94911157ba24b5eec4beb15dcb 168 PANTHER PTHR11544:SF43 1 156 1.4E-26 T 23-04-2016 RD1_RS14675 52ecee94911157ba24b5eec4beb15dcb 168 Gene3D G3DSA:2.40.50.140 3 63 7.2E-18 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS14675 52ecee94911157ba24b5eec4beb15dcb 168 Gene3D G3DSA:2.40.50.140 97 156 1.5E-14 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS14675 52ecee94911157ba24b5eec4beb15dcb 168 PANTHER PTHR11544 1 156 1.4E-26 T 23-04-2016 RD1_RS14675 52ecee94911157ba24b5eec4beb15dcb 168 SUPERFAMILY SSF50249 2 64 2.48E-16 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS14675 52ecee94911157ba24b5eec4beb15dcb 168 Pfam PF00313 'Cold-shock' DNA-binding domain 3 64 1.9E-13 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS14675 52ecee94911157ba24b5eec4beb15dcb 168 Pfam PF00313 'Cold-shock' DNA-binding domain 97 157 2.0E-12 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS14675 52ecee94911157ba24b5eec4beb15dcb 168 SMART SM00357 2 66 1.6E-7 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 RD1_RS14675 52ecee94911157ba24b5eec4beb15dcb 168 SMART SM00357 95 159 9.1E-4 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 2.4E-7 T 23-04-2016 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 PRINTS PR00096 Glutamine amidotransferase superfamily signature 175 188 2.4E-7 T 23-04-2016 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 2.4E-7 T 23-04-2016 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 SUPERFAMILY SSF54810 402 522 1.09E-50 T 23-04-2016 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 PANTHER PTHR11922 4 519 1.6E-264 T 23-04-2016 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 Gene3D G3DSA:3.40.50.620 220 393 1.7E-59 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 Gene3D G3DSA:3.40.50.880 4 219 1.1E-55 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 Pfam PF00958 GMP synthase C terminal domain 430 521 3.1E-40 T 23-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 Pfam PF00117 Glutamine amidotransferase class-I 11 196 3.9E-35 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 Pfam PF03054 tRNA methyl transferase 226 257 3.0E-5 T 23-04-2016 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 198 9.7E-56 T 23-04-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 SUPERFAMILY SSF52317 6 234 2.58E-52 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 Gene3D G3DSA:3.30.300.10 398 522 4.8E-50 T 23-04-2016 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 212 522 1.7E-141 T 23-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 PRINTS PR00097 Anthranilate synthase component II signature 175 188 4.0E-5 T 23-04-2016 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 PRINTS PR00097 Anthranilate synthase component II signature 54 63 4.0E-5 T 23-04-2016 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 PRINTS PR00097 Anthranilate synthase component II signature 81 92 4.0E-5 T 23-04-2016 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 PANTHER PTHR11922:SF2 4 519 1.6E-264 T 23-04-2016 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 SUPERFAMILY SSF52402 198 415 2.43E-57 T 23-04-2016 RD1_RS12755 d180f7e4fe76eea5667c922d3daaf17b 522 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 6 522 51.294 T 23-04-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RD1_RS15535 1b3271462ee078341961789989c086cb 176 Pfam PF04752 ChaC-like protein 3 172 1.4E-49 T 23-04-2016 IPR006840 ChaC-like protein RD1_RS15535 1b3271462ee078341961789989c086cb 176 SUPERFAMILY SSF110857 1 127 4.45E-12 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like RD1_RS15535 1b3271462ee078341961789989c086cb 176 PANTHER PTHR12192 1 174 5.6E-50 T 23-04-2016 IPR006840 ChaC-like protein RD1_RS15535 1b3271462ee078341961789989c086cb 176 Gene3D G3DSA:3.10.490.10 2 164 4.5E-25 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 323 5.4E-83 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 Gene3D G3DSA:3.30.1490.20 130 202 1.9E-30 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 Gene3D G3DSA:3.30.470.20 204 465 3.5E-99 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 SUPERFAMILY SSF56059 83 348 2.65E-71 T 23-04-2016 RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 PANTHER PTHR18866 577 681 0.0 T 23-04-2016 RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 PANTHER PTHR18866 1 362 0.0 T 23-04-2016 RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 PANTHER PTHR18866 383 556 0.0 T 23-04-2016 RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 637 654 - T 23-04-2016 IPR001882 Biotin-binding site RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 109 1.5E-44 T 23-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 Gene3D G3DSA:2.40.50.100 605 681 6.0E-23 T 23-04-2016 RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 SUPERFAMILY SSF52440 1 113 4.6E-48 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 Pfam PF00364 Biotin-requiring enzyme 617 679 4.3E-17 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 Gene3D G3DSA:3.40.50.20 1 129 4.9E-52 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 SUPERFAMILY SSF51230 603 681 3.4E-20 T 23-04-2016 IPR011053 Single hybrid motif RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 SUPERFAMILY SSF51246 331 465 4.87E-38 T 23-04-2016 IPR011054 Rudiment single hybrid motif RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 Pfam PF02785 Biotin carboxylase C-terminal domain 336 462 3.6E-34 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS09410 eb23fd9b68c17d8b439148c463c8eb30 681 SMART SM00878 336 462 2.1E-57 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RD1_RS15630 49875023c1c0ca1ac5d341edd413e5e6 156 PANTHER PTHR30437 1 155 5.4E-63 T 23-04-2016 RD1_RS15630 49875023c1c0ca1ac5d341edd413e5e6 156 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 5.8E-30 T 23-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RD1_RS15630 49875023c1c0ca1ac5d341edd413e5e6 156 Gene3D G3DSA:3.10.50.30 79 155 8.8E-30 T 23-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RD1_RS15630 49875023c1c0ca1ac5d341edd413e5e6 156 SUPERFAMILY SSF54534 82 155 6.8E-23 T 23-04-2016 RD1_RS15630 49875023c1c0ca1ac5d341edd413e5e6 156 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 153 1.5E-57 T 23-04-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 RD1_RS15630 49875023c1c0ca1ac5d341edd413e5e6 156 Gene3D G3DSA:1.10.287.180 1 75 2.0E-32 T 23-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RD1_RS15630 49875023c1c0ca1ac5d341edd413e5e6 156 SUPERFAMILY SSF46557 3 78 1.7E-27 T 23-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RD1_RS15630 49875023c1c0ca1ac5d341edd413e5e6 156 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 155 8.5E-28 T 23-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RD1_RS15630 49875023c1c0ca1ac5d341edd413e5e6 156 PIRSF PIRSF006092 1 156 2.9E-51 T 23-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 RD1_RS15630 49875023c1c0ca1ac5d341edd413e5e6 156 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 23-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RD1_RS15630 49875023c1c0ca1ac5d341edd413e5e6 156 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 154 30.265 T 23-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 RD1_RS20450 0c758a0e8e00f08f8e6119e0d76bc54a 176 Gene3D G3DSA:3.90.1140.10 9 175 1.3E-30 T 23-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase RD1_RS20450 0c758a0e8e00f08f8e6119e0d76bc54a 176 Pfam PF13563 2'-5' RNA ligase superfamily 40 156 2.4E-6 T 23-04-2016 RD1_RS20450 0c758a0e8e00f08f8e6119e0d76bc54a 176 SUPERFAMILY SSF55144 8 175 2.96E-18 T 23-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase RD1_RS19005 d588ba585d639880ff7bd7bb9f6c2a51 141 Gene3D G3DSA:3.10.180.10 1 123 5.2E-31 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS19005 d588ba585d639880ff7bd7bb9f6c2a51 141 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 119 4.2E-8 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RD1_RS19005 d588ba585d639880ff7bd7bb9f6c2a51 141 SUPERFAMILY SSF54593 5 123 8.86E-22 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS06055 86b860fce8087077faedd6a213f3f75d 98 SUPERFAMILY SSF48600 12 95 9.16E-23 T 23-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RD1_RS06055 86b860fce8087077faedd6a213f3f75d 98 Gene3D G3DSA:1.20.59.10 8 94 6.1E-19 T 23-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RD1_RS06055 86b860fce8087077faedd6a213f3f75d 98 SMART SM00830 16 96 1.5E-20 T 23-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RD1_RS06055 86b860fce8087077faedd6a213f3f75d 98 TIGRFAM TIGR01795 CM_mono_cladeE: chorismate mutase 12 95 4.2E-34 T 23-04-2016 IPR010951 Chorismate mutase, bacteria RD1_RS06055 86b860fce8087077faedd6a213f3f75d 98 Pfam PF01817 Chorismate mutase type II 16 91 2.3E-16 T 23-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RD1_RS18720 e18e08b126ff4502c3135f5a56183a45 265 PANTHER PTHR30341 1 242 3.0E-78 T 23-04-2016 RD1_RS18720 e18e08b126ff4502c3135f5a56183a45 265 PANTHER PTHR30341:SF1 1 242 3.0E-78 T 23-04-2016 RD1_RS18720 e18e08b126ff4502c3135f5a56183a45 265 Gene3D G3DSA:3.90.226.10 10 121 3.5E-36 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS18720 e18e08b126ff4502c3135f5a56183a45 265 Gene3D G3DSA:3.90.226.10 189 220 3.5E-36 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS18720 e18e08b126ff4502c3135f5a56183a45 265 Pfam PF01343 Peptidase family S49 79 219 4.6E-32 T 23-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RD1_RS18720 e18e08b126ff4502c3135f5a56183a45 265 SUPERFAMILY SSF52096 3 125 6.47E-35 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS18720 e18e08b126ff4502c3135f5a56183a45 265 SUPERFAMILY SSF52096 156 214 6.47E-35 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS06025 89fb33bda83932b7cea4079a1b986ce4 73 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 70 8.1E-31 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06025 89fb33bda83932b7cea4079a1b986ce4 73 ProSitePatterns PS01143 Ribosomal protein L31 signature. 38 60 - T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06025 89fb33bda83932b7cea4079a1b986ce4 73 PANTHER PTHR33280 1 70 7.3E-22 T 23-04-2016 RD1_RS06025 89fb33bda83932b7cea4079a1b986ce4 73 PANTHER PTHR33280:SF2 1 70 7.3E-22 T 23-04-2016 RD1_RS06025 89fb33bda83932b7cea4079a1b986ce4 73 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.6E-7 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06025 89fb33bda83932b7cea4079a1b986ce4 73 PRINTS PR01249 Ribosomal protein L31 signature 50 68 2.6E-7 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06025 89fb33bda83932b7cea4079a1b986ce4 73 Pfam PF01197 Ribosomal protein L31 1 69 9.8E-23 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06025 89fb33bda83932b7cea4079a1b986ce4 73 SUPERFAMILY SSF143800 1 71 1.53E-19 T 23-04-2016 RD1_RS16410 495f017ad6d8758f2ecb52ce4f651357 267 PANTHER PTHR12905 41 216 1.8E-22 T 23-04-2016 RD1_RS16410 495f017ad6d8758f2ecb52ce4f651357 267 PANTHER PTHR12905 4 21 1.8E-22 T 23-04-2016 RD1_RS16410 495f017ad6d8758f2ecb52ce4f651357 267 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 2 252 32.975 T 23-04-2016 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 RD1_RS16410 495f017ad6d8758f2ecb52ce4f651357 267 Gene3D G3DSA:3.60.21.10 2 244 4.4E-33 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS16410 495f017ad6d8758f2ecb52ce4f651357 267 SUPERFAMILY SSF56300 3 253 1.3E-51 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS16410 495f017ad6d8758f2ecb52ce4f651357 267 Pfam PF00149 Calcineurin-like phosphoesterase 3 197 6.1E-17 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RD1_RS16410 495f017ad6d8758f2ecb52ce4f651357 267 PANTHER PTHR12905:SF7 41 216 1.8E-22 T 23-04-2016 RD1_RS16410 495f017ad6d8758f2ecb52ce4f651357 267 PANTHER PTHR12905:SF7 4 21 1.8E-22 T 23-04-2016 RD1_RS14945 1e608e0cf5cdd916846b17ec84080557 70 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 5 50 1.5E-15 T 23-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RD1_RS14945 1e608e0cf5cdd916846b17ec84080557 70 Pfam PF02416 mttA/Hcf106 family 5 54 3.6E-11 T 23-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RD1_RS14945 1e608e0cf5cdd916846b17ec84080557 70 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 2 64 17.632 T 23-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RD1_RS15700 e6984bfd9269cc0c8e953e11a5cbd38b 184 Gene3D G3DSA:3.30.70.1300 41 127 6.7E-24 T 23-04-2016 RD1_RS15700 e6984bfd9269cc0c8e953e11a5cbd38b 184 SUPERFAMILY SSF143456 2 184 1.57E-62 T 23-04-2016 RD1_RS15700 e6984bfd9269cc0c8e953e11a5cbd38b 184 Pfam PF02622 Uncharacterized ACR, COG1678 12 171 6.1E-49 T 23-04-2016 IPR003774 Protein of unknown function UPF0301 RD1_RS15700 e6984bfd9269cc0c8e953e11a5cbd38b 184 PANTHER PTHR30327:SF1 1 184 3.2E-55 T 23-04-2016 RD1_RS15700 e6984bfd9269cc0c8e953e11a5cbd38b 184 Gene3D G3DSA:3.40.1740.10 128 174 2.2E-33 T 23-04-2016 RD1_RS15700 e6984bfd9269cc0c8e953e11a5cbd38b 184 Gene3D G3DSA:3.40.1740.10 2 40 2.2E-33 T 23-04-2016 RD1_RS15700 e6984bfd9269cc0c8e953e11a5cbd38b 184 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 1 184 35.921 T 23-04-2016 IPR003774 Protein of unknown function UPF0301 RD1_RS15700 e6984bfd9269cc0c8e953e11a5cbd38b 184 PANTHER PTHR30327 1 184 3.2E-55 T 23-04-2016 RD1_RS16645 caa238a44efb7625bbd0e08e47c312be 301 SUPERFAMILY SSF56784 45 299 5.38E-46 T 23-04-2016 IPR023214 HAD-like domain RD1_RS16645 caa238a44efb7625bbd0e08e47c312be 301 PANTHER PTHR19288 36 299 1.1E-45 T 23-04-2016 RD1_RS16645 caa238a44efb7625bbd0e08e47c312be 301 Pfam PF13242 HAD-hyrolase-like 225 285 5.1E-10 T 23-04-2016 RD1_RS16645 caa238a44efb7625bbd0e08e47c312be 301 Pfam PF13344 Haloacid dehalogenase-like hydrolase 48 134 1.4E-15 T 23-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA RD1_RS16645 caa238a44efb7625bbd0e08e47c312be 301 Gene3D G3DSA:3.40.50.1000 225 299 2.4E-33 T 23-04-2016 IPR023214 HAD-like domain RD1_RS16645 caa238a44efb7625bbd0e08e47c312be 301 Gene3D G3DSA:3.40.50.1000 45 117 2.4E-33 T 23-04-2016 IPR023214 HAD-like domain RD1_RS16645 caa238a44efb7625bbd0e08e47c312be 301 TIGRFAM TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family 39 272 1.6E-31 T 23-04-2016 IPR006356 HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 RD1_RS16565 899757af9a08d282e44a085e9b90e6ce 229 PANTHER PTHR24220 3 223 1.2E-111 T 23-04-2016 RD1_RS16565 899757af9a08d282e44a085e9b90e6ce 229 SMART SM00382 26 208 6.5E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS16565 899757af9a08d282e44a085e9b90e6ce 229 Gene3D G3DSA:3.40.50.300 1 221 2.2E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16565 899757af9a08d282e44a085e9b90e6ce 229 PANTHER PTHR24220:SF404 3 223 1.2E-111 T 23-04-2016 RD1_RS16565 899757af9a08d282e44a085e9b90e6ce 229 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 229 1.3E-99 T 23-04-2016 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE RD1_RS16565 899757af9a08d282e44a085e9b90e6ce 229 SUPERFAMILY SSF52540 2 218 1.63E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16565 899757af9a08d282e44a085e9b90e6ce 229 Pfam PF00005 ABC transporter 17 158 2.2E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS17040 9333cef2160d7671130286d62ff099ed 406 SUPERFAMILY SSF53448 37 405 7.74E-83 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS15405 9f34e3040728af77c28c6cea6b3855af 82 Pfam PF10658 Protein of unknown function (DUF2484) 1 77 5.4E-34 T 23-04-2016 IPR018919 Protein of unknown function DUF2484 RD1_RS12435 d6af11d7211534b50f5674dfe27a5297 111 PANTHER PTHR30561:SF1 1 111 3.3E-46 T 23-04-2016 RD1_RS12435 d6af11d7211534b50f5674dfe27a5297 111 PANTHER PTHR30561 1 111 3.3E-46 T 23-04-2016 RD1_RS12435 d6af11d7211534b50f5674dfe27a5297 111 SUPERFAMILY SSF103481 6 107 1.2E-20 T 23-04-2016 RD1_RS12435 d6af11d7211534b50f5674dfe27a5297 111 Pfam PF00893 Small Multidrug Resistance protein 4 95 5.8E-27 T 23-04-2016 IPR000390 Small multidrug resistance protein family GO:0016021 RD1_RS19170 dc8992333b4cd2ad186cd4c7c70dc5da 286 Pfam PF01497 Periplasmic binding protein 33 261 1.4E-29 T 23-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 RD1_RS19170 dc8992333b4cd2ad186cd4c7c70dc5da 286 PANTHER PTHR30535 22 286 5.5E-81 T 23-04-2016 RD1_RS19170 dc8992333b4cd2ad186cd4c7c70dc5da 286 SUPERFAMILY SSF53807 30 284 3.14E-51 T 23-04-2016 RD1_RS19170 dc8992333b4cd2ad186cd4c7c70dc5da 286 Gene3D G3DSA:3.40.50.1980 31 148 5.4E-23 T 23-04-2016 RD1_RS19170 dc8992333b4cd2ad186cd4c7c70dc5da 286 Gene3D G3DSA:3.40.50.1980 153 284 4.8E-20 T 23-04-2016 RD1_RS19170 dc8992333b4cd2ad186cd4c7c70dc5da 286 PANTHER PTHR30535:SF4 22 286 5.5E-81 T 23-04-2016 RD1_RS08185 38c35f72df63f45b7cbbcbfe4a56b1f1 612 Pfam PF00664 ABC transporter transmembrane region 49 323 1.3E-36 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS08185 38c35f72df63f45b7cbbcbfe4a56b1f1 612 ProSitePatterns PS00211 ABC transporters family signature. 507 521 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS08185 38c35f72df63f45b7cbbcbfe4a56b1f1 612 Gene3D G3DSA:1.20.1560.10 32 358 2.0E-63 T 23-04-2016 RD1_RS08185 38c35f72df63f45b7cbbcbfe4a56b1f1 612 PANTHER PTHR24221 8 612 0.0 T 23-04-2016 RD1_RS08185 38c35f72df63f45b7cbbcbfe4a56b1f1 612 SMART SM00382 395 581 2.9E-17 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS08185 38c35f72df63f45b7cbbcbfe4a56b1f1 612 SUPERFAMILY SSF52540 360 605 4.37E-92 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08185 38c35f72df63f45b7cbbcbfe4a56b1f1 612 Gene3D G3DSA:3.40.50.300 370 600 4.6E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08185 38c35f72df63f45b7cbbcbfe4a56b1f1 612 PANTHER PTHR24221:SF18 8 612 0.0 T 23-04-2016 RD1_RS08185 38c35f72df63f45b7cbbcbfe4a56b1f1 612 SUPERFAMILY SSF90123 32 358 1.83E-62 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS08185 38c35f72df63f45b7cbbcbfe4a56b1f1 612 Pfam PF00005 ABC transporter 386 535 9.8E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS16430 28f5eaa3caa2f637c69620c6eca4979e 339 Gene3D G3DSA:3.40.50.300 4 236 2.8E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16430 28f5eaa3caa2f637c69620c6eca4979e 339 SUPERFAMILY SSF50331 252 337 1.56E-15 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS16430 28f5eaa3caa2f637c69620c6eca4979e 339 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS16430 28f5eaa3caa2f637c69620c6eca4979e 339 Gene3D G3DSA:2.40.50.140 262 323 3.1E-5 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS16430 28f5eaa3caa2f637c69620c6eca4979e 339 PANTHER PTHR24220:SF151 8 270 4.8E-126 T 23-04-2016 RD1_RS16430 28f5eaa3caa2f637c69620c6eca4979e 339 SUPERFAMILY SSF52540 7 244 1.41E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16430 28f5eaa3caa2f637c69620c6eca4979e 339 Pfam PF00005 ABC transporter 23 164 6.4E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS16430 28f5eaa3caa2f637c69620c6eca4979e 339 PANTHER PTHR24220 8 270 4.8E-126 T 23-04-2016 RD1_RS16430 28f5eaa3caa2f637c69620c6eca4979e 339 Pfam PF08402 TOBE domain 259 330 3.9E-8 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RD1_RS16430 28f5eaa3caa2f637c69620c6eca4979e 339 SMART SM00382 31 214 8.9E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS00910 cb1060234b3b4e08cda9909f80f8dd6d 347 SUPERFAMILY SSF51735 145 309 2.31E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00910 cb1060234b3b4e08cda9909f80f8dd6d 347 Gene3D G3DSA:3.40.50.720 177 291 8.9E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00910 cb1060234b3b4e08cda9909f80f8dd6d 347 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 66 80 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 RD1_RS00910 cb1060234b3b4e08cda9909f80f8dd6d 347 SMART SM00829 16 342 3.0E-4 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RD1_RS00910 cb1060234b3b4e08cda9909f80f8dd6d 347 SUPERFAMILY SSF50129 4 177 5.78E-45 T 23-04-2016 IPR011032 GroES-like RD1_RS00910 cb1060234b3b4e08cda9909f80f8dd6d 347 Pfam PF00107 Zinc-binding dehydrogenase 178 302 2.9E-23 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RD1_RS00910 cb1060234b3b4e08cda9909f80f8dd6d 347 PANTHER PTHR11695 17 346 2.9E-116 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS00910 cb1060234b3b4e08cda9909f80f8dd6d 347 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 139 6.2E-23 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RD1_RS00910 cb1060234b3b4e08cda9909f80f8dd6d 347 PANTHER PTHR11695:SF285 17 346 2.9E-116 T 23-04-2016 RD1_RS00910 cb1060234b3b4e08cda9909f80f8dd6d 347 Gene3D G3DSA:3.90.180.10 3 176 1.4E-42 T 23-04-2016 IPR011032 GroES-like RD1_RS14375 3a784a7b9eb0559348a4bfe4f16c81db 351 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 222 238 - T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RD1_RS14375 3a784a7b9eb0559348a4bfe4f16c81db 351 Pfam PF03462 PCRF domain 11 198 1.1E-67 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RD1_RS14375 3a784a7b9eb0559348a4bfe4f16c81db 351 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 4 348 1.0E-147 T 23-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RD1_RS14375 3a784a7b9eb0559348a4bfe4f16c81db 351 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 3 350 38.611 T 23-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RD1_RS14375 3a784a7b9eb0559348a4bfe4f16c81db 351 Gene3D G3DSA:3.30.160.20 205 278 1.7E-32 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain RD1_RS14375 3a784a7b9eb0559348a4bfe4f16c81db 351 PANTHER PTHR11075:SF9 4 349 4.2E-167 T 23-04-2016 RD1_RS14375 3a784a7b9eb0559348a4bfe4f16c81db 351 Pfam PF00472 RF-1 domain 206 314 7.7E-40 T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RD1_RS14375 3a784a7b9eb0559348a4bfe4f16c81db 351 SMART SM00937 58 173 5.2E-59 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RD1_RS14375 3a784a7b9eb0559348a4bfe4f16c81db 351 SUPERFAMILY SSF75620 11 345 2.49E-129 T 23-04-2016 RD1_RS14375 3a784a7b9eb0559348a4bfe4f16c81db 351 Gene3D G3DSA:1.20.58.410 7 88 1.7E-11 T 23-04-2016 RD1_RS14375 3a784a7b9eb0559348a4bfe4f16c81db 351 PANTHER PTHR11075 4 349 4.2E-167 T 23-04-2016 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 13 579 6.2E-109 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 PANTHER PTHR11956:SF6 318 579 2.0E-187 T 23-04-2016 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 PANTHER PTHR11956:SF6 1 302 2.0E-187 T 23-04-2016 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 Pfam PF00750 tRNA synthetases class I (R) 117 431 5.0E-16 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 PANTHER PTHR11956 318 579 2.0E-187 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 PANTHER PTHR11956 1 302 2.0E-187 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 SUPERFAMILY SSF55190 23 107 1.57E-22 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 Gene3D G3DSA:1.10.730.10 457 579 5.9E-37 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 SMART SM00836 451 579 1.1E-54 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 Gene3D G3DSA:3.30.1360.70 6 112 1.6E-28 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 SMART SM01016 5 94 1.3E-32 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 SUPERFAMILY SSF52374 118 462 8.73E-85 T 23-04-2016 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 133 142 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 SUPERFAMILY SSF47323 445 579 2.22E-32 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 Pfam PF05746 DALR anticodon binding domain 451 579 5.5E-30 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 Gene3D G3DSA:3.40.50.620 117 456 2.1E-96 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 PRINTS PR01038 Arginyl-tRNA synthetase signature 162 175 4.8E-24 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 PRINTS PR01038 Arginyl-tRNA synthetase signature 320 341 4.8E-24 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 PRINTS PR01038 Arginyl-tRNA synthetase signature 123 138 4.8E-24 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 PRINTS PR01038 Arginyl-tRNA synthetase signature 138 154 4.8E-24 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 23 94 6.4E-21 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RD1_RS14555 eef04a4895fb90b8d8ffc6733635d9b4 580 Hamap MF_00123 Arginine--tRNA ligase [argS]. 9 579 24.788 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RD1_RS15415 cc6032c3fcab5d5b774863dca3ea2b89 366 PANTHER PTHR21015 5 362 1.8E-73 T 23-04-2016 RD1_RS15415 cc6032c3fcab5d5b774863dca3ea2b89 366 Gene3D G3DSA:3.40.50.2000 257 340 1.4E-5 T 23-04-2016 RD1_RS15415 cc6032c3fcab5d5b774863dca3ea2b89 366 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 7 143 4.4E-28 T 23-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS15415 cc6032c3fcab5d5b774863dca3ea2b89 366 PANTHER PTHR21015:SF22 5 362 1.8E-73 T 23-04-2016 RD1_RS15415 cc6032c3fcab5d5b774863dca3ea2b89 366 Gene3D G3DSA:3.40.50.2000 5 197 3.1E-47 T 23-04-2016 RD1_RS15415 cc6032c3fcab5d5b774863dca3ea2b89 366 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 6 360 30.569 T 23-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS15415 cc6032c3fcab5d5b774863dca3ea2b89 366 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 6 355 2.3E-76 T 23-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS15415 cc6032c3fcab5d5b774863dca3ea2b89 366 SUPERFAMILY SSF53756 6 361 1.17E-102 T 23-04-2016 RD1_RS15415 cc6032c3fcab5d5b774863dca3ea2b89 366 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 186 349 1.6E-34 T 23-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS03620 9f95dcd6d6dc0641e12c8936a5e590e4 156 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 48 66 - T 23-04-2016 IPR030489 Transcription regulator Rrf2-type, conserved site RD1_RS03620 9f95dcd6d6dc0641e12c8936a5e590e4 156 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 3.7E-29 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type RD1_RS03620 9f95dcd6d6dc0641e12c8936a5e590e4 156 PANTHER PTHR33221:SF4 2 153 1.1E-49 T 23-04-2016 RD1_RS03620 9f95dcd6d6dc0641e12c8936a5e590e4 156 PANTHER PTHR33221 2 153 1.1E-49 T 23-04-2016 RD1_RS03620 9f95dcd6d6dc0641e12c8936a5e590e4 156 Gene3D G3DSA:1.10.10.10 1 136 5.7E-37 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03620 9f95dcd6d6dc0641e12c8936a5e590e4 156 Pfam PF02082 Transcriptional regulator 1 81 1.3E-17 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type RD1_RS03620 9f95dcd6d6dc0641e12c8936a5e590e4 156 SUPERFAMILY SSF46785 2 135 1.54E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS15355 c8113db6581afa122d64469230888d68 114 Pfam PF04248 Domain of unknown function (DUF427) 15 105 2.7E-30 T 23-04-2016 IPR007361 Domain of unknown function DUF427 RD1_RS15355 c8113db6581afa122d64469230888d68 114 PANTHER PTHR34310:SF3 5 106 7.6E-34 T 23-04-2016 RD1_RS15355 c8113db6581afa122d64469230888d68 114 PANTHER PTHR34310 5 106 7.6E-34 T 23-04-2016 RD1_RS11010 899bb7c184fb9aec8e7c8e638252b170 239 SMART SM00866 94 234 6.8E-27 T 23-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RD1_RS11010 899bb7c184fb9aec8e7c8e638252b170 239 SMART SM00345 14 73 6.1E-21 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS11010 899bb7c184fb9aec8e7c8e638252b170 239 Gene3D G3DSA:1.10.10.10 4 70 5.2E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11010 899bb7c184fb9aec8e7c8e638252b170 239 Pfam PF07702 UTRA domain 95 233 2.0E-26 T 23-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RD1_RS11010 899bb7c184fb9aec8e7c8e638252b170 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 3.4E-9 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS11010 899bb7c184fb9aec8e7c8e638252b170 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 3.4E-9 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS11010 899bb7c184fb9aec8e7c8e638252b170 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 73 7.4E-20 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS11010 899bb7c184fb9aec8e7c8e638252b170 239 TIGRFAM TIGR02325 C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF 8 238 3.5E-64 T 23-04-2016 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF RD1_RS11010 899bb7c184fb9aec8e7c8e638252b170 239 SUPERFAMILY SSF46785 3 77 2.28E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11010 899bb7c184fb9aec8e7c8e638252b170 239 SUPERFAMILY SSF64288 61 237 3.61E-38 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RD1_RS11010 899bb7c184fb9aec8e7c8e638252b170 239 PANTHER PTHR11751 98 108 7.2E-18 T 23-04-2016 RD1_RS11010 899bb7c184fb9aec8e7c8e638252b170 239 PANTHER PTHR11751 14 75 7.2E-18 T 23-04-2016 RD1_RS11010 899bb7c184fb9aec8e7c8e638252b170 239 Gene3D G3DSA:3.40.1410.10 71 238 1.4E-36 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RD1_RS07335 707625093f174ec38749f73d6dbb84ad 375 Gene3D G3DSA:2.40.50.100 55 87 1.8E-21 T 23-04-2016 RD1_RS07335 707625093f174ec38749f73d6dbb84ad 375 Gene3D G3DSA:2.40.50.100 162 195 1.8E-21 T 23-04-2016 RD1_RS07335 707625093f174ec38749f73d6dbb84ad 375 PANTHER PTHR30158 3 375 1.8E-113 T 23-04-2016 RD1_RS07335 707625093f174ec38749f73d6dbb84ad 375 SUPERFAMILY SSF111369 43 288 1.14E-63 T 23-04-2016 RD1_RS07335 707625093f174ec38749f73d6dbb84ad 375 PANTHER PTHR30158:SF2 3 375 1.8E-113 T 23-04-2016 RD1_RS07335 707625093f174ec38749f73d6dbb84ad 375 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 29 364 2.6E-82 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RD1_RS07335 707625093f174ec38749f73d6dbb84ad 375 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 52 282 8.7E-15 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RD1_RS00585 a539041e66984a82650e06ad4bb9c016 273 TIGRFAM TIGR03055 photo_alph_chp2: putative photosynthetic complex assembly protein 2 7 253 3.6E-84 T 23-04-2016 IPR017496 Photosynthetic complex assembly protein 2, putative RD1_RS00585 a539041e66984a82650e06ad4bb9c016 273 Pfam PF12291 Protein of unknown function (DUF3623) 2 259 1.2E-96 T 23-04-2016 IPR017496 Photosynthetic complex assembly protein 2, putative RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 PRINTS PR00690 Adhesin family signature 239 257 4.3E-35 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 PRINTS PR00690 Adhesin family signature 60 73 4.3E-35 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 PRINTS PR00690 Adhesin family signature 186 207 4.3E-35 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 PRINTS PR00690 Adhesin family signature 270 289 4.3E-35 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 PRINTS PR00690 Adhesin family signature 29 47 4.3E-35 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 PRINTS PR00690 Adhesin family signature 73 90 4.3E-35 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 Pfam PF01297 Zinc-uptake complex component A periplasmic 32 303 1.1E-68 T 23-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 Gene3D G3DSA:3.40.50.1980 25 178 3.7E-43 T 23-04-2016 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 PANTHER PTHR30477:SF16 6 317 4.5E-110 T 23-04-2016 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 PRINTS PR00691 Adhesin B signature 29 50 5.7E-17 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 PRINTS PR00691 Adhesin B signature 283 301 5.7E-17 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 PRINTS PR00691 Adhesin B signature 54 72 5.7E-17 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 PRINTS PR00691 Adhesin B signature 186 203 5.7E-17 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 PRINTS PR00691 Adhesin B signature 73 92 5.7E-17 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 PRINTS PR00691 Adhesin B signature 262 280 5.7E-17 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 SUPERFAMILY SSF53807 29 305 6.38E-80 T 23-04-2016 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 Gene3D G3DSA:3.40.50.1980 179 305 3.3E-41 T 23-04-2016 RD1_RS04245 6d9ee2be8d3a3d65a9fd16e37487f115 318 PANTHER PTHR30477 6 317 4.5E-110 T 23-04-2016 RD1_RS17245 c453672cd0182aa491e7de23f8ccedbb 328 Pfam PF01261 Xylose isomerase-like TIM barrel 38 241 4.1E-19 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS17245 c453672cd0182aa491e7de23f8ccedbb 328 PRINTS PR00688 Xylose isomerase signature 263 274 1.5E-7 T 23-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RD1_RS17245 c453672cd0182aa491e7de23f8ccedbb 328 PRINTS PR00688 Xylose isomerase signature 162 186 1.5E-7 T 23-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RD1_RS17245 c453672cd0182aa491e7de23f8ccedbb 328 PRINTS PR00688 Xylose isomerase signature 93 112 1.5E-7 T 23-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RD1_RS17245 c453672cd0182aa491e7de23f8ccedbb 328 PRINTS PR00688 Xylose isomerase signature 70 90 1.5E-7 T 23-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RD1_RS17245 c453672cd0182aa491e7de23f8ccedbb 328 SUPERFAMILY SSF51658 7 326 1.7E-77 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS17245 c453672cd0182aa491e7de23f8ccedbb 328 Gene3D G3DSA:3.20.20.150 43 326 1.5E-73 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS16375 99b6a164dd006d6c38a04e183f2aac6d 239 PANTHER PTHR21235:SF15 1 238 1.0E-100 T 23-04-2016 RD1_RS16375 99b6a164dd006d6c38a04e183f2aac6d 239 SUPERFAMILY SSF51366 1 237 7.3E-73 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RD1_RS16375 99b6a164dd006d6c38a04e183f2aac6d 239 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 236 35.721 T 23-04-2016 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 RD1_RS16375 99b6a164dd006d6c38a04e183f2aac6d 239 PANTHER PTHR21235 1 238 1.0E-100 T 23-04-2016 RD1_RS16375 99b6a164dd006d6c38a04e183f2aac6d 239 Gene3D G3DSA:3.20.20.70 1 237 9.2E-85 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS16375 99b6a164dd006d6c38a04e183f2aac6d 239 Pfam PF00977 Histidine biosynthesis protein 3 228 1.1E-79 T 23-04-2016 IPR006062 Histidine biosynthesis GO:0000105 RD1_RS16375 99b6a164dd006d6c38a04e183f2aac6d 239 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 232 2.3E-78 T 23-04-2016 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 RD1_RS15785 4cfaf24f232199e4b71cb74541be2be8 592 Pfam PF01019 Gamma-glutamyltranspeptidase 75 587 7.8E-147 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS15785 4cfaf24f232199e4b71cb74541be2be8 592 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 61 584 1.5E-118 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS15785 4cfaf24f232199e4b71cb74541be2be8 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 436 454 5.9E-60 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS15785 4cfaf24f232199e4b71cb74541be2be8 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 157 175 5.9E-60 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS15785 4cfaf24f232199e4b71cb74541be2be8 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 414 432 5.9E-60 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS15785 4cfaf24f232199e4b71cb74541be2be8 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 82 107 5.9E-60 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS15785 4cfaf24f232199e4b71cb74541be2be8 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 306 325 5.9E-60 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS15785 4cfaf24f232199e4b71cb74541be2be8 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 175 194 5.9E-60 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS15785 4cfaf24f232199e4b71cb74541be2be8 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 472 487 5.9E-60 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS15785 4cfaf24f232199e4b71cb74541be2be8 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 276 292 5.9E-60 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS15785 4cfaf24f232199e4b71cb74541be2be8 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 496 513 5.9E-60 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS15785 4cfaf24f232199e4b71cb74541be2be8 592 PANTHER PTHR11686 25 591 1.8E-229 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS15785 4cfaf24f232199e4b71cb74541be2be8 592 SUPERFAMILY SSF56235 52 591 6.37E-163 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS15785 4cfaf24f232199e4b71cb74541be2be8 592 PANTHER PTHR11686:SF27 25 591 1.8E-229 T 23-04-2016 RD1_RS09685 36c71debea190a03207407305063a4f0 132 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 3 125 2.3E-47 T 23-04-2016 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 KEGG: 00360+3.1.2.-|KEGG: 00362+3.1.2.-|KEGG: 00592+3.1.2.-|KEGG: 00903+3.1.2.- RD1_RS09685 36c71debea190a03207407305063a4f0 132 Gene3D G3DSA:3.10.129.10 2 125 7.7E-47 T 23-04-2016 IPR029069 HotDog domain RD1_RS09685 36c71debea190a03207407305063a4f0 132 Pfam PF03061 Thioesterase superfamily 18 98 1.9E-17 T 23-04-2016 IPR006683 Thioesterase domain RD1_RS09685 36c71debea190a03207407305063a4f0 132 PANTHER PTHR31793:SF9 2 125 9.5E-41 T 23-04-2016 RD1_RS09685 36c71debea190a03207407305063a4f0 132 SUPERFAMILY SSF54637 1 126 7.15E-41 T 23-04-2016 IPR029069 HotDog domain RD1_RS09685 36c71debea190a03207407305063a4f0 132 PIRSF PIRSF003230 1 129 5.3E-46 T 23-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RD1_RS09685 36c71debea190a03207407305063a4f0 132 PANTHER PTHR31793 2 125 9.5E-41 T 23-04-2016 RD1_RS09685 36c71debea190a03207407305063a4f0 132 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 6 113 3.9E-31 T 23-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RD1_RS10200 16550148091f8161326f2ef79821fccc 259 PANTHER PTHR20854 1 253 8.6E-63 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS10200 16550148091f8161326f2ef79821fccc 259 SUPERFAMILY SSF56655 6 254 1.7E-69 T 23-04-2016 RD1_RS10200 16550148091f8161326f2ef79821fccc 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 1.4E-33 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS10200 16550148091f8161326f2ef79821fccc 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 1.4E-33 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS10200 16550148091f8161326f2ef79821fccc 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 205 229 1.4E-33 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS10200 16550148091f8161326f2ef79821fccc 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 174 195 1.4E-33 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS10200 16550148091f8161326f2ef79821fccc 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 80 96 1.4E-33 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS10200 16550148091f8161326f2ef79821fccc 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 129 152 1.4E-33 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS10200 16550148091f8161326f2ef79821fccc 259 Gene3D G3DSA:3.40.190.80 154 255 3.0E-19 T 23-04-2016 RD1_RS10200 16550148091f8161326f2ef79821fccc 259 Gene3D G3DSA:3.30.540.10 6 153 1.1E-46 T 23-04-2016 RD1_RS10200 16550148091f8161326f2ef79821fccc 259 Pfam PF00459 Inositol monophosphatase family 6 243 1.1E-53 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS10200 16550148091f8161326f2ef79821fccc 259 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 80 93 - T 23-04-2016 IPR020583 Inositol monophosphatase, metal-binding site RD1_RS10200 16550148091f8161326f2ef79821fccc 259 PANTHER PTHR20854:SF4 1 253 8.6E-63 T 23-04-2016 RD1_RS11715 60f9dc6540dfe75dfa0df84d13169888 92 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 4 85 2.7E-27 T 23-04-2016 IPR003849 Preprotein translocase YajC RD1_RS11715 60f9dc6540dfe75dfa0df84d13169888 92 PRINTS PR01853 Bacterial YajC preprotein translocase signature 4 24 7.3E-17 T 23-04-2016 IPR003849 Preprotein translocase YajC RD1_RS11715 60f9dc6540dfe75dfa0df84d13169888 92 PRINTS PR01853 Bacterial YajC preprotein translocase signature 42 60 7.3E-17 T 23-04-2016 IPR003849 Preprotein translocase YajC RD1_RS11715 60f9dc6540dfe75dfa0df84d13169888 92 Pfam PF02699 Preprotein translocase subunit 6 82 2.7E-30 T 23-04-2016 IPR003849 Preprotein translocase YajC RD1_RS11715 60f9dc6540dfe75dfa0df84d13169888 92 SMART SM01323 2 85 2.4E-44 T 23-04-2016 IPR003849 Preprotein translocase YajC RD1_RS11715 60f9dc6540dfe75dfa0df84d13169888 92 PANTHER PTHR33909 1 89 1.0E-26 T 23-04-2016 RD1_RS11715 60f9dc6540dfe75dfa0df84d13169888 92 PANTHER PTHR33909:SF1 1 89 1.0E-26 T 23-04-2016 RD1_RS10530 d0f976ba194f994c2d87231d23e5efbf 252 SMART SM00345 15 76 2.9E-19 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS10530 d0f976ba194f994c2d87231d23e5efbf 252 Pfam PF07729 FCD domain 108 217 1.7E-15 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS10530 d0f976ba194f994c2d87231d23e5efbf 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 1.8E-10 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS10530 d0f976ba194f994c2d87231d23e5efbf 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 1.8E-10 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS10530 d0f976ba194f994c2d87231d23e5efbf 252 Gene3D G3DSA:1.10.10.10 6 82 5.1E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS10530 d0f976ba194f994c2d87231d23e5efbf 252 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 69 2.5E-18 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS10530 d0f976ba194f994c2d87231d23e5efbf 252 PANTHER PTHR11751 232 250 1.5E-13 T 23-04-2016 RD1_RS10530 d0f976ba194f994c2d87231d23e5efbf 252 PANTHER PTHR11751 14 83 1.5E-13 T 23-04-2016 RD1_RS10530 d0f976ba194f994c2d87231d23e5efbf 252 SUPERFAMILY SSF48008 107 219 2.09E-16 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS10530 d0f976ba194f994c2d87231d23e5efbf 252 SMART SM00895 105 227 2.3E-8 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS10530 d0f976ba194f994c2d87231d23e5efbf 252 SUPERFAMILY SSF46785 4 80 3.86E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS10530 d0f976ba194f994c2d87231d23e5efbf 252 Gene3D G3DSA:1.20.120.530 106 216 1.6E-14 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS10955 63b534a6e5d83cdb77531b84a9dd30c5 367 Gene3D G3DSA:3.40.50.10470 164 352 7.0E-60 T 23-04-2016 RD1_RS10955 63b534a6e5d83cdb77531b84a9dd30c5 367 SUPERFAMILY SSF100950 1 352 1.84E-112 T 23-04-2016 RD1_RS10955 63b534a6e5d83cdb77531b84a9dd30c5 367 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 7 359 35.368 T 23-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 RD1_RS10955 63b534a6e5d83cdb77531b84a9dd30c5 367 Gene3D G3DSA:1.20.120.420 9 163 1.5E-47 T 23-04-2016 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 RD1_RS10955 63b534a6e5d83cdb77531b84a9dd30c5 367 PANTHER PTHR10233:SF6 12 367 4.8E-131 T 23-04-2016 RD1_RS10955 63b534a6e5d83cdb77531b84a9dd30c5 367 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 38 348 4.3E-87 T 23-04-2016 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 RD1_RS10955 63b534a6e5d83cdb77531b84a9dd30c5 367 Pfam PF01008 Initiation factor 2 subunit family 52 348 2.9E-58 T 23-04-2016 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 RD1_RS10955 63b534a6e5d83cdb77531b84a9dd30c5 367 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 10 349 1.1E-132 T 23-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 RD1_RS10955 63b534a6e5d83cdb77531b84a9dd30c5 367 PANTHER PTHR10233 12 367 4.8E-131 T 23-04-2016 RD1_RS08135 f4b59d193bbd63527b81d5951f4a9665 75 Pfam PF06945 Protein of unknown function (DUF1289) 12 59 5.0E-19 T 23-04-2016 IPR010710 Protein of unknown function DUF1289 RD1_RS08135 f4b59d193bbd63527b81d5951f4a9665 75 PANTHER PTHR35175 10 58 6.0E-12 T 23-04-2016 RD1_RS09310 8f2fbd0e7d3badc804bac29dab095e6c 301 Pfam PF00892 EamA-like transporter family 12 142 1.6E-10 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS09310 8f2fbd0e7d3badc804bac29dab095e6c 301 Pfam PF00892 EamA-like transporter family 155 290 1.8E-6 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS09310 8f2fbd0e7d3badc804bac29dab095e6c 301 SUPERFAMILY SSF103481 193 294 5.1E-6 T 23-04-2016 RD1_RS09310 8f2fbd0e7d3badc804bac29dab095e6c 301 SUPERFAMILY SSF103481 43 145 5.1E-8 T 23-04-2016 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 213 227 - T 23-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 Pfam PF00459 Inositol monophosphatase family 9 259 2.4E-58 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 1.5E-53 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 132 155 1.5E-53 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 210 234 1.5E-53 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 1.5E-53 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 1.5E-53 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 179 200 1.5E-53 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 PANTHER PTHR20854 7 260 1.4E-81 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 PANTHER PTHR20854:SF4 7 260 1.4E-81 T 23-04-2016 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 Gene3D G3DSA:3.40.190.80 153 260 1.7E-31 T 23-04-2016 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 83 96 - T 23-04-2016 IPR020583 Inositol monophosphatase, metal-binding site RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 SUPERFAMILY SSF56655 7 260 1.83E-81 T 23-04-2016 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 Gene3D G3DSA:3.30.540.10 7 152 4.0E-51 T 23-04-2016 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 PRINTS PR01959 SuhB family inositol monophosphatase signature 158 184 9.4E-29 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 PRINTS PR01959 SuhB family inositol monophosphatase signature 106 125 9.4E-29 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 PRINTS PR01959 SuhB family inositol monophosphatase signature 19 41 9.4E-29 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RD1_RS11530 167ca311c6bb29dc3a634ba5a1981068 261 PRINTS PR01959 SuhB family inositol monophosphatase signature 200 212 9.4E-29 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RD1_RS15600 cf5cdb9c33e2ae0c0b9c3244aeb050dd 71 Gene3D G3DSA:3.30.70.790 1 69 6.4E-34 T 23-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 RD1_RS15600 cf5cdb9c33e2ae0c0b9c3244aeb050dd 71 SUPERFAMILY SSF54913 1 69 5.56E-25 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta RD1_RS15600 cf5cdb9c33e2ae0c0b9c3244aeb050dd 71 Pfam PF09413 Putative prokaryotic signal transducing protein 1 65 8.4E-15 T 23-04-2016 IPR018551 Domain of unknown function DUF2007 RD1_RS10355 cae993990891d4562657afd648d534e8 171 SUPERFAMILY SSF64438 6 148 1.74E-41 T 23-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic RD1_RS10355 cae993990891d4562657afd648d534e8 171 PANTHER PTHR35147 17 171 1.2E-35 T 23-04-2016 RD1_RS10355 cae993990891d4562657afd648d534e8 171 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 1 151 23.176 T 23-04-2016 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 RD1_RS10355 cae993990891d4562657afd648d534e8 171 PANTHER PTHR35147:SF2 17 171 1.2E-35 T 23-04-2016 RD1_RS10355 cae993990891d4562657afd648d534e8 171 Pfam PF03975 CheD chemotactic sensory transduction 65 146 2.2E-20 T 23-04-2016 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 RD1_RS02820 1e2a8b18c346867af80d7ad790ce7fef 281 Gene3D G3DSA:3.40.50.720 6 87 6.0E-7 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02820 1e2a8b18c346867af80d7ad790ce7fef 281 Gene3D G3DSA:3.40.50.720 88 226 1.8E-17 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02820 1e2a8b18c346867af80d7ad790ce7fef 281 SUPERFAMILY SSF51735 10 280 3.33E-40 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS02820 1e2a8b18c346867af80d7ad790ce7fef 281 PANTHER PTHR10366 5 280 1.0E-71 T 23-04-2016 RD1_RS02820 1e2a8b18c346867af80d7ad790ce7fef 281 PANTHER PTHR10366:SF430 5 280 1.0E-71 T 23-04-2016 RD1_RS17605 49a9614da70be2306927bce55b7bd713 375 Pfam PF13579 Glycosyl transferase 4-like domain 16 179 1.8E-23 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RD1_RS17605 49a9614da70be2306927bce55b7bd713 375 PANTHER PTHR12526 4 371 9.8E-48 T 23-04-2016 RD1_RS17605 49a9614da70be2306927bce55b7bd713 375 SUPERFAMILY SSF53756 6 369 9.84E-66 T 23-04-2016 RD1_RS17605 49a9614da70be2306927bce55b7bd713 375 Gene3D G3DSA:3.40.50.2000 185 346 2.8E-23 T 23-04-2016 RD1_RS17605 49a9614da70be2306927bce55b7bd713 375 Pfam PF00534 Glycosyl transferases group 1 196 350 3.8E-27 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RD1_RS00835 977123270196d4b621f93d4f1db94945 231 Pfam PF13410 Glutathione S-transferase, C-terminal domain 159 225 2.5E-9 T 23-04-2016 RD1_RS00835 977123270196d4b621f93d4f1db94945 231 PANTHER PTHR12289:SF35 2 228 1.2E-41 T 23-04-2016 RD1_RS00835 977123270196d4b621f93d4f1db94945 231 SUPERFAMILY SSF52833 15 101 1.44E-8 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS00835 977123270196d4b621f93d4f1db94945 231 Gene3D G3DSA:3.40.30.10 44 74 3.0E-4 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS00835 977123270196d4b621f93d4f1db94945 231 SUPERFAMILY SSF47616 152 226 2.42E-7 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS00835 977123270196d4b621f93d4f1db94945 231 Pfam PF17172 Glutathione S-transferase N-terminal domain 19 114 2.9E-19 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS00835 977123270196d4b621f93d4f1db94945 231 PANTHER PTHR12289 2 228 1.2E-41 T 23-04-2016 RD1_RS00835 977123270196d4b621f93d4f1db94945 231 Gene3D G3DSA:1.20.1050.10 108 227 1.7E-7 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS07145 ec3eda361d0d29efe7e8e98c0f5fa358 637 PANTHER PTHR22888:SF3 535 636 1.6E-48 T 23-04-2016 RD1_RS07145 ec3eda361d0d29efe7e8e98c0f5fa358 637 Gene3D G3DSA:2.130.10.10 95 513 3.7E-190 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RD1_RS07145 ec3eda361d0d29efe7e8e98c0f5fa358 637 TIGRFAM TIGR04244 nitrous_NosZ_RR: nitrous-oxide reductase, TAT-dependent 12 633 0.0 T 23-04-2016 IPR023644 Nitrous-oxide reductase GO:0005507|GO:0005509|GO:0050304|GO:0055114 KEGG: 00910+1.7.2.4|MetaCyc: PWY-6748|MetaCyc: PWY-7084|UniPathway: UPA00652 RD1_RS07145 ec3eda361d0d29efe7e8e98c0f5fa358 637 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 578 626 - T 23-04-2016 IPR001505 Copper centre Cu(A) GO:0005507 RD1_RS07145 ec3eda361d0d29efe7e8e98c0f5fa358 637 Gene3D G3DSA:2.60.40.420 532 632 2.2E-48 T 23-04-2016 IPR008972 Cupredoxin RD1_RS07145 ec3eda361d0d29efe7e8e98c0f5fa358 637 PANTHER PTHR22888 535 636 1.6E-48 T 23-04-2016 RD1_RS07145 ec3eda361d0d29efe7e8e98c0f5fa358 637 SUPERFAMILY SSF49503 490 634 1.4E-34 T 23-04-2016 IPR008972 Cupredoxin RD1_RS07145 ec3eda361d0d29efe7e8e98c0f5fa358 637 SUPERFAMILY SSF50974 50 503 2.35E-146 T 23-04-2016 IPR011045 Nitrous oxide reductase, N-terminal RD1_RS01160 d945b0c0e01680b89af6c5333a044d85 342 SUPERFAMILY SSF46689 288 338 6.45E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS01160 d945b0c0e01680b89af6c5333a044d85 342 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 35 204 1.6E-27 T 23-04-2016 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RD1_RS01160 d945b0c0e01680b89af6c5333a044d85 342 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 319 335 8.9E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RD1_RS01160 d945b0c0e01680b89af6c5333a044d85 342 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 304 319 8.9E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RD1_RS01160 d945b0c0e01680b89af6c5333a044d85 342 Gene3D G3DSA:1.10.10.60 288 338 2.7E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS01160 d945b0c0e01680b89af6c5333a044d85 342 PANTHER PTHR11019 241 338 1.6E-27 T 23-04-2016 RD1_RS01160 d945b0c0e01680b89af6c5333a044d85 342 Pfam PF12833 Helix-turn-helix domain 260 337 1.2E-16 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS01160 d945b0c0e01680b89af6c5333a044d85 342 PANTHER PTHR11019:SF52 241 338 1.6E-27 T 23-04-2016 RD1_RS01160 d945b0c0e01680b89af6c5333a044d85 342 SMART SM00342 253 335 2.4E-17 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS09995 f2e983d8c23670e90ed1933313f3d0e1 246 SMART SM00382 29 222 4.1E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS09995 f2e983d8c23670e90ed1933313f3d0e1 246 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 4 246 6.2E-109 T 23-04-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD RD1_RS09995 f2e983d8c23670e90ed1933313f3d0e1 246 Pfam PF00005 ABC transporter 21 175 9.8E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS09995 f2e983d8c23670e90ed1933313f3d0e1 246 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 224 245 4.6E-6 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD1_RS09995 f2e983d8c23670e90ed1933313f3d0e1 246 PANTHER PTHR24220:SF366 6 246 1.3E-117 T 23-04-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD RD1_RS09995 f2e983d8c23670e90ed1933313f3d0e1 246 PANTHER PTHR24220 6 246 1.3E-117 T 23-04-2016 RD1_RS09995 f2e983d8c23670e90ed1933313f3d0e1 246 Gene3D G3DSA:3.40.50.300 2 243 9.6E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09995 f2e983d8c23670e90ed1933313f3d0e1 246 SUPERFAMILY SSF52540 3 244 8.75E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07455 192840e38bed3d307f126475dd3bf1ef 397 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 267 291 - T 23-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS07455 192840e38bed3d307f126475dd3bf1ef 397 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 395 3.5E-156 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RD1_RS07455 192840e38bed3d307f126475dd3bf1ef 397 SUPERFAMILY SSF56059 1 248 1.14E-75 T 23-04-2016 RD1_RS07455 192840e38bed3d307f126475dd3bf1ef 397 PANTHER PTHR11815:SF1 1 396 3.4E-227 T 23-04-2016 RD1_RS07455 192840e38bed3d307f126475dd3bf1ef 397 Pfam PF08442 ATP-grasp domain 2 212 1.2E-72 T 23-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS07455 192840e38bed3d307f126475dd3bf1ef 397 Gene3D G3DSA:3.30.470.20 105 249 1.4E-52 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS07455 192840e38bed3d307f126475dd3bf1ef 397 SUPERFAMILY SSF52210 250 395 5.23E-54 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS07455 192840e38bed3d307f126475dd3bf1ef 397 Gene3D G3DSA:3.40.50.261 252 393 6.2E-67 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS07455 192840e38bed3d307f126475dd3bf1ef 397 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 396 41.342 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RD1_RS07455 192840e38bed3d307f126475dd3bf1ef 397 PIRSF PIRSF001554 1 397 1.7E-148 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RD1_RS07455 192840e38bed3d307f126475dd3bf1ef 397 Gene3D G3DSA:3.30.1490.20 22 104 5.6E-31 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS07455 192840e38bed3d307f126475dd3bf1ef 397 PANTHER PTHR11815 1 396 3.4E-227 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RD1_RS07455 192840e38bed3d307f126475dd3bf1ef 397 Pfam PF00549 CoA-ligase 272 390 9.4E-28 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 SUPERFAMILY SSF51120 930 1120 1.22E-24 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 SUPERFAMILY SSF51120 572 672 1.02E-12 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 SUPERFAMILY SSF51120 440 605 2.62E-18 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 875 891 0.0044 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 848 865 1.7 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 654 670 0.0022 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 794 811 0.12 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 983 1000 2.8 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 759 773 17.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 517 534 0.15 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 676 690 0.35 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 574 590 4.4 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1002 1018 0.066 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 636 652 11.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 947 964 0.17 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 776 793 6.1 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 692 707 0.18 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 440 454 0.44 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 554 570 12.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 535 552 0.0045 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 830 846 0.14 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 894 910 0.033 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 930 946 0.016 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 812 827 9.3E-4 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 966 982 1.7 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 912 927 7.1 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Gene3D G3DSA:2.150.10.10 693 727 5.4E-28 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Gene3D G3DSA:2.150.10.10 965 1090 1.9E-18 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Gene3D G3DSA:2.150.10.10 454 626 1.5E-18 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Gene3D G3DSA:2.150.10.10 764 850 5.4E-28 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 Gene3D G3DSA:2.150.10.10 851 964 1.6E-31 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 SUPERFAMILY SSF51120 852 967 1.44E-19 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 PRINTS PR00313 NodO calcium binding signature 583 592 1.2E-8 T 23-04-2016 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 PRINTS PR00313 NodO calcium binding signature 545 553 1.2E-8 T 23-04-2016 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 PRINTS PR00313 NodO calcium binding signature 563 571 1.2E-8 T 23-04-2016 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 PRINTS PR00313 NodO calcium binding signature 533 544 1.2E-8 T 23-04-2016 RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 800 818 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 791 809 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 782 800 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1007 1025 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 998 1016 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 541 559 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 935 953 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 532 550 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 926 944 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 917 935 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 980 998 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 971 989 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 SUPERFAMILY SSF51120 679 746 1.48E-19 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS07135 c10a8a0a721585a1291788245f3186bd 1138 SUPERFAMILY SSF51120 775 922 1.48E-19 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS06995 080e046a6944441544703c530ccc3689 157 Gene3D G3DSA:1.10.760.10 27 157 3.4E-29 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS06995 080e046a6944441544703c530ccc3689 157 Pfam PF00034 Cytochrome c 59 156 4.2E-9 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS06995 080e046a6944441544703c530ccc3689 157 TIGRFAM TIGR04485 thiosulf_SoxX: sulfur oxidation c-type cytochrome SoxX 58 155 3.0E-26 T 23-04-2016 IPR030999 Sulfur oxidation c-type cytochrome SoxX RD1_RS06995 080e046a6944441544703c530ccc3689 157 SUPERFAMILY SSF46626 1 156 1.86E-28 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS15620 6f7f33bad7d046e2327e646b3a732b2e 549 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 445 546 3.3E-47 T 23-04-2016 IPR007859 ETF-QO/FixX GO:0051536|GO:0055114 RD1_RS15620 6f7f33bad7d046e2327e646b3a732b2e 549 SUPERFAMILY SSF51905 5 208 1.79E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS15620 6f7f33bad7d046e2327e646b3a732b2e 549 SUPERFAMILY SSF51905 305 447 1.79E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS15620 6f7f33bad7d046e2327e646b3a732b2e 549 PANTHER PTHR10617 1 472 6.0E-224 T 23-04-2016 RD1_RS15620 6f7f33bad7d046e2327e646b3a732b2e 549 Gene3D G3DSA:3.50.50.60 115 220 2.7E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS15620 6f7f33bad7d046e2327e646b3a732b2e 549 Gene3D G3DSA:3.50.50.60 306 445 2.7E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS15620 6f7f33bad7d046e2327e646b3a732b2e 549 Gene3D G3DSA:3.50.50.60 11 49 2.7E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS15620 6f7f33bad7d046e2327e646b3a732b2e 549 SUPERFAMILY SSF54373 209 305 8.63E-37 T 23-04-2016 RD1_RS15620 6f7f33bad7d046e2327e646b3a732b2e 549 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 177 192 1.4E-5 T 23-04-2016 RD1_RS15620 6f7f33bad7d046e2327e646b3a732b2e 549 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 12 34 1.4E-5 T 23-04-2016 RD1_RS15620 6f7f33bad7d046e2327e646b3a732b2e 549 Pfam PF13450 NAD(P)-binding Rossmann-like domain 15 56 1.4E-8 T 23-04-2016 RD1_RS15620 6f7f33bad7d046e2327e646b3a732b2e 549 SUPERFAMILY SSF54862 449 549 2.51E-27 T 23-04-2016 RD1_RS15620 6f7f33bad7d046e2327e646b3a732b2e 549 PANTHER PTHR10617:SF107 1 472 6.0E-224 T 23-04-2016 IPR007859 ETF-QO/FixX GO:0051536|GO:0055114 RD1_RS00175 cfa17474a645222578ba8839287e3989 214 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 11 201 1.9E-22 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RD1_RS00175 cfa17474a645222578ba8839287e3989 214 SUPERFAMILY SSF88697 10 201 1.32E-50 T 23-04-2016 IPR015947 PUA-like domain RD1_RS00175 cfa17474a645222578ba8839287e3989 214 SMART SM00464 10 202 6.2E-8 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RD1_RS00175 cfa17474a645222578ba8839287e3989 214 PANTHER PTHR10046 6 204 7.8E-24 T 23-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 Gene3D G3DSA:2.40.50.100 572 641 7.6E-20 T 23-04-2016 RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 326 1.6E-73 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 Gene3D G3DSA:3.40.50.20 3 129 3.1E-48 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 SMART SM01209 114 297 0.0086 T 23-04-2016 RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 110 2.9E-40 T 23-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 SUPERFAMILY SSF52440 2 113 1.44E-44 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 Gene3D G3DSA:3.30.470.20 204 449 3.2E-97 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 Pfam PF00364 Biotin-requiring enzyme 575 640 1.1E-12 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 SUPERFAMILY SSF51230 562 641 4.19E-18 T 23-04-2016 IPR011053 Single hybrid motif RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 PANTHER PTHR18866 562 643 0.0 T 23-04-2016 RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 PANTHER PTHR18866 1 539 0.0 T 23-04-2016 RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 597 614 - T 23-04-2016 IPR001882 Biotin-binding site RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 SUPERFAMILY SSF51246 335 448 3.14E-35 T 23-04-2016 IPR011054 Rudiment single hybrid motif RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 290 297 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 SMART SM00878 340 444 2.3E-51 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 Pfam PF02785 Biotin carboxylase C-terminal domain 340 445 1.2E-32 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 Gene3D G3DSA:3.30.1490.20 130 202 1.2E-29 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS15145 e89da1f21acf02660fe02e053b1b94cd 645 SUPERFAMILY SSF56059 83 352 1.5E-67 T 23-04-2016 RD1_RS17305 a21550bf5e4bc6e433713be12435cca1 205 Pfam PF13410 Glutathione S-transferase, C-terminal domain 118 177 1.3E-8 T 23-04-2016 RD1_RS17305 a21550bf5e4bc6e433713be12435cca1 205 SUPERFAMILY SSF47616 89 195 1.26E-17 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS17305 a21550bf5e4bc6e433713be12435cca1 205 Gene3D G3DSA:1.20.1050.10 90 192 2.0E-11 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS17305 a21550bf5e4bc6e433713be12435cca1 205 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 75 3.2E-16 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RD1_RS17305 a21550bf5e4bc6e433713be12435cca1 205 PANTHER PTHR11260 1 190 5.9E-17 T 23-04-2016 RD1_RS17305 a21550bf5e4bc6e433713be12435cca1 205 Gene3D G3DSA:3.40.30.10 4 81 4.0E-20 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS17305 a21550bf5e4bc6e433713be12435cca1 205 SUPERFAMILY SSF52833 1 80 8.13E-19 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS00690 d81fd2bcaf091cc0e6ff19a0aedbf08d 256 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 7.0E-20 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RD1_RS00690 d81fd2bcaf091cc0e6ff19a0aedbf08d 256 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 82 101 7.0E-20 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RD1_RS00690 d81fd2bcaf091cc0e6ff19a0aedbf08d 256 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 7.0E-20 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RD1_RS00690 d81fd2bcaf091cc0e6ff19a0aedbf08d 256 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 24 45 7.0E-20 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RD1_RS00690 d81fd2bcaf091cc0e6ff19a0aedbf08d 256 PANTHER PTHR30065 4 248 7.2E-27 T 23-04-2016 RD1_RS00690 d81fd2bcaf091cc0e6ff19a0aedbf08d 256 Pfam PF01311 Bacterial export proteins, family 1 18 245 1.2E-44 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RD1_RS11280 1d3ddb65b7157c4f9b10bda1f8013930 158 PRINTS PR01837 MgtC/SapB protein signature 70 92 1.6E-30 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RD1_RS11280 1d3ddb65b7157c4f9b10bda1f8013930 158 PRINTS PR01837 MgtC/SapB protein signature 35 53 1.6E-30 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RD1_RS11280 1d3ddb65b7157c4f9b10bda1f8013930 158 PRINTS PR01837 MgtC/SapB protein signature 16 35 1.6E-30 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RD1_RS11280 1d3ddb65b7157c4f9b10bda1f8013930 158 PRINTS PR01837 MgtC/SapB protein signature 99 123 1.6E-30 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RD1_RS11280 1d3ddb65b7157c4f9b10bda1f8013930 158 PANTHER PTHR33778 8 146 6.6E-31 T 23-04-2016 RD1_RS11280 1d3ddb65b7157c4f9b10bda1f8013930 158 Pfam PF02308 MgtC family 13 145 6.0E-30 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RD1_RS06435 ce298f4b15615763477229ac28ed88a3 218 SMART SM00287 154 218 5.4E-6 T 23-04-2016 IPR003646 SH3-like domain, bacterial-type RD1_RS06435 ce298f4b15615763477229ac28ed88a3 218 Pfam PF08239 Bacterial SH3 domain 163 211 4.5E-11 T 23-04-2016 IPR003646 SH3-like domain, bacterial-type RD1_RS13560 8ec1d04d09d14f2a973a9aed75676472 161 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 6 151 9.1E-19 T 23-04-2016 IPR009936 Protein of unknown function DUF1468 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 6 148 7.4E-37 T 23-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 5 306 38.301 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 PANTHER PTHR11405:SF16 5 303 3.9E-121 T 23-04-2016 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 Gene3D G3DSA:3.40.50.1370 3 142 5.6E-49 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 SUPERFAMILY SSF53671 2 306 1.14E-92 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 256 265 1.5E-13 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 1.5E-13 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 136 147 1.5E-13 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 PRINTS PR00101 Aspartate carbamoyltransferase signature 285 299 9.0E-29 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 PRINTS PR00101 Aspartate carbamoyltransferase signature 219 228 9.0E-29 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 PRINTS PR00101 Aspartate carbamoyltransferase signature 42 64 9.0E-29 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 PRINTS PR00101 Aspartate carbamoyltransferase signature 135 152 9.0E-29 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 PRINTS PR00101 Aspartate carbamoyltransferase signature 260 265 9.0E-29 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 PRINTS PR00101 Aspartate carbamoyltransferase signature 80 89 9.0E-29 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 PANTHER PTHR11405 5 303 3.9E-121 T 23-04-2016 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 52 59 - T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 6 303 2.6E-91 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 Gene3D G3DSA:3.40.50.1370 143 279 2.8E-48 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RD1_RS15735 1ff814abf5a9cb7e845cdb1bacff536e 314 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 157 302 4.3E-21 T 23-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RD1_RS03445 5d8e08cf35938b4590833f7608d96032 311 PANTHER PTHR31528 1 304 3.3E-93 T 23-04-2016 IPR027939 NMT1/THI5 family GO:0009228 UniPathway: UPA00060 RD1_RS03445 5d8e08cf35938b4590833f7608d96032 311 Gene3D G3DSA:3.40.190.10 107 203 1.6E-14 T 23-04-2016 RD1_RS03445 5d8e08cf35938b4590833f7608d96032 311 SUPERFAMILY SSF53850 23 300 1.63E-51 T 23-04-2016 RD1_RS03445 5d8e08cf35938b4590833f7608d96032 311 Pfam PF09084 NMT1/THI5 like 31 242 1.1E-70 T 23-04-2016 IPR015168 SsuA/THI5-like RD1_RS03445 5d8e08cf35938b4590833f7608d96032 311 PANTHER PTHR31528:SF5 1 304 3.3E-93 T 23-04-2016 RD1_RS13100 af0fde80beb6e2d53fe11df172c149cf 251 Gene3D G3DSA:3.40.50.300 21 247 2.8E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13100 af0fde80beb6e2d53fe11df172c149cf 251 SUPERFAMILY SSF52540 21 246 3.13E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13100 af0fde80beb6e2d53fe11df172c149cf 251 Pfam PF00005 ABC transporter 37 179 2.0E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS13100 af0fde80beb6e2d53fe11df172c149cf 251 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS13100 af0fde80beb6e2d53fe11df172c149cf 251 PANTHER PTHR24220 22 249 7.6E-92 T 23-04-2016 RD1_RS13100 af0fde80beb6e2d53fe11df172c149cf 251 PANTHER PTHR24220:SF568 22 249 7.6E-92 T 23-04-2016 RD1_RS13100 af0fde80beb6e2d53fe11df172c149cf 251 SMART SM00382 45 228 5.5E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS11085 f7251bcf0551fa95755173a246df5068 221 PANTHER PTHR11751:SF384 12 98 2.3E-22 T 23-04-2016 RD1_RS11085 f7251bcf0551fa95755173a246df5068 221 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 72 3.2E-16 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS11085 f7251bcf0551fa95755173a246df5068 221 SMART SM00895 82 206 2.9E-14 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS11085 f7251bcf0551fa95755173a246df5068 221 SMART SM00345 14 72 6.8E-16 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS11085 f7251bcf0551fa95755173a246df5068 221 Gene3D G3DSA:1.10.10.10 3 73 1.2E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11085 f7251bcf0551fa95755173a246df5068 221 Pfam PF07729 FCD domain 83 205 5.2E-22 T 23-04-2016 IPR011711 GntR, C-terminal RD1_RS11085 f7251bcf0551fa95755173a246df5068 221 Gene3D G3DSA:1.20.120.530 77 215 5.3E-25 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS11085 f7251bcf0551fa95755173a246df5068 221 SUPERFAMILY SSF46785 1 100 1.74E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11085 f7251bcf0551fa95755173a246df5068 221 SUPERFAMILY SSF48008 78 212 2.17E-22 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RD1_RS11085 f7251bcf0551fa95755173a246df5068 221 PANTHER PTHR11751 12 98 2.3E-22 T 23-04-2016 RD1_RS11085 f7251bcf0551fa95755173a246df5068 221 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 8.9E-7 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS11085 f7251bcf0551fa95755173a246df5068 221 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 8.9E-7 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS17315 836ac65d9cea79f995364e4285b86609 132 Pfam PF01989 Protein of unknown function DUF126 24 98 1.0E-23 T 23-04-2016 IPR002840 Domain of unknown function DUF126 RD1_RS17315 836ac65d9cea79f995364e4285b86609 132 PANTHER PTHR36577 2 101 4.3E-24 T 23-04-2016 RD1_RS17315 836ac65d9cea79f995364e4285b86609 132 PANTHER PTHR36577:SF1 2 101 4.3E-24 T 23-04-2016 RD1_RS17315 836ac65d9cea79f995364e4285b86609 132 SUPERFAMILY SSF52016 1 130 4.71E-33 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RD1_RS17315 836ac65d9cea79f995364e4285b86609 132 Gene3D G3DSA:3.50.30.10 1 129 1.9E-33 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RD1_RS17265 60e4076841e364292fc78c021faec7cf 138 PRINTS PR01438 Universal stress protein signature 98 110 1.9E-12 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS17265 60e4076841e364292fc78c021faec7cf 138 PRINTS PR01438 Universal stress protein signature 2 20 1.9E-12 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS17265 60e4076841e364292fc78c021faec7cf 138 PRINTS PR01438 Universal stress protein signature 116 138 1.9E-12 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS17265 60e4076841e364292fc78c021faec7cf 138 Gene3D G3DSA:3.40.50.620 1 138 4.5E-27 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS17265 60e4076841e364292fc78c021faec7cf 138 Pfam PF00582 Universal stress protein family 1 135 1.0E-24 T 23-04-2016 IPR006016 UspA GO:0006950 RD1_RS17265 60e4076841e364292fc78c021faec7cf 138 PANTHER PTHR31964 1 138 1.2E-19 T 23-04-2016 RD1_RS17265 60e4076841e364292fc78c021faec7cf 138 SUPERFAMILY SSF52402 2 138 5.27E-24 T 23-04-2016 RD1_RS08335 07b25d1a7ad0754347245dc79182312c 152 Pfam PF06319 Protein of unknown function (DUF1052) 15 145 4.1E-48 T 23-04-2016 IPR009394 DNA repair protein MmcB-like RD1_RS08335 07b25d1a7ad0754347245dc79182312c 152 PIRSF PIRSF031796 9 148 1.5E-45 T 23-04-2016 IPR009394 DNA repair protein MmcB-like RD1_RS08335 07b25d1a7ad0754347245dc79182312c 152 SUPERFAMILY SSF52980 11 106 3.49E-9 T 23-04-2016 IPR011335 Restriction endonuclease type II-like RD1_RS07910 11d3d4571359704da8d44b08c1a9f83b 508 PANTHER PTHR33362 334 508 4.0E-161 T 23-04-2016 RD1_RS07910 11d3d4571359704da8d44b08c1a9f83b 508 PANTHER PTHR33362 1 282 4.0E-161 T 23-04-2016 RD1_RS07910 11d3d4571359704da8d44b08c1a9f83b 508 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 2 498 1.0E-77 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS07910 11d3d4571359704da8d44b08c1a9f83b 508 PANTHER PTHR33362:SF7 334 508 4.0E-161 T 23-04-2016 RD1_RS07910 11d3d4571359704da8d44b08c1a9f83b 508 PANTHER PTHR33362:SF7 1 282 4.0E-161 T 23-04-2016 RD1_RS08765 304e7943d7099c5a59b101a9d6289e1f 268 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 34 135 1.7E-11 T 23-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RD1_RS08765 304e7943d7099c5a59b101a9d6289e1f 268 SUPERFAMILY SSF161098 36 234 3.4E-29 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08765 304e7943d7099c5a59b101a9d6289e1f 268 PANTHER PTHR30614 7 254 1.0E-40 T 23-04-2016 RD1_RS08765 304e7943d7099c5a59b101a9d6289e1f 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 54 248 9.3E-17 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08765 304e7943d7099c5a59b101a9d6289e1f 268 Gene3D G3DSA:1.10.3720.10 35 250 3.1E-31 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS02775 70ecd357461f32e157014560e437f7bb 487 Gene3D G3DSA:3.30.1730.10 12 173 3.9E-58 T 23-04-2016 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 RD1_RS02775 70ecd357461f32e157014560e437f7bb 487 PANTHER PTHR21234 186 486 2.6E-112 T 23-04-2016 IPR018017 Nucleoside phosphorylase RD1_RS02775 70ecd357461f32e157014560e437f7bb 487 PANTHER PTHR21234:SF11 186 486 2.6E-112 T 23-04-2016 RD1_RS02775 70ecd357461f32e157014560e437f7bb 487 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 20 173 2.1E-54 T 23-04-2016 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 RD1_RS02775 70ecd357461f32e157014560e437f7bb 487 Hamap MF_01932 AMP nucleosidase [amn]. 11 487 58.956 T 23-04-2016 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 RD1_RS02775 70ecd357461f32e157014560e437f7bb 487 Gene3D G3DSA:3.40.50.1580 180 468 1.2E-109 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RD1_RS02775 70ecd357461f32e157014560e437f7bb 487 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 20 486 3.7E-199 T 23-04-2016 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 RD1_RS02775 70ecd357461f32e157014560e437f7bb 487 SUPERFAMILY SSF53167 17 486 3.14E-152 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RD1_RS02775 70ecd357461f32e157014560e437f7bb 487 Pfam PF01048 Phosphorylase superfamily 266 431 2.6E-15 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 11 305 33.746 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 Gene3D G3DSA:3.40.190.10 119 207 3.6E-34 T 23-04-2016 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 Gene3D G3DSA:3.40.190.10 10 118 2.1E-41 T 23-04-2016 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 239 255 - T 23-04-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 SUPERFAMILY SSF53850 11 227 1.56E-71 T 23-04-2016 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 12 220 6.8E-69 T 23-04-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 SUPERFAMILY SSF54782 228 312 3.92E-22 T 23-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 PRINTS PR00151 Porphobilinogen deaminase signature 132 149 9.0E-43 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 PRINTS PR00151 Porphobilinogen deaminase signature 84 103 9.0E-43 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 PRINTS PR00151 Porphobilinogen deaminase signature 238 255 9.0E-43 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 PRINTS PR00151 Porphobilinogen deaminase signature 151 168 9.0E-43 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 PRINTS PR00151 Porphobilinogen deaminase signature 53 73 9.0E-43 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 12 305 5.7E-99 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 Gene3D G3DSA:3.30.160.40 231 307 1.5E-20 T 23-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 PIRSF PIRSF001438 2 314 7.0E-108 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 236 303 5.9E-14 T 23-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 PANTHER PTHR11557 11 312 2.1E-126 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RD1_RS05925 a14c7b5cd5ffb3f1d67421abf6f27d8a 314 PANTHER PTHR11557:SF0 11 312 2.1E-126 T 23-04-2016 RD1_RS03795 7000564975f5921cc732ec34d1e9f815 332 PIRSF PIRSF000428 1 332 4.0E-103 T 23-04-2016 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RD1_RS03795 7000564975f5921cc732ec34d1e9f815 332 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 18 327 3.5E-107 T 23-04-2016 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RD1_RS03795 7000564975f5921cc732ec34d1e9f815 332 Gene3D G3DSA:3.40.50.10750 138 303 2.4E-61 T 23-04-2016 RD1_RS03795 7000564975f5921cc732ec34d1e9f815 332 SUPERFAMILY SSF53659 2 329 1.44E-91 T 23-04-2016 RD1_RS03795 7000564975f5921cc732ec34d1e9f815 332 PANTHER PTHR23406 1 329 5.5E-46 T 23-04-2016 RD1_RS03795 7000564975f5921cc732ec34d1e9f815 332 PANTHER PTHR23406:SF3 1 329 5.5E-46 T 23-04-2016 RD1_RS03795 7000564975f5921cc732ec34d1e9f815 332 Pfam PF01515 Phosphate acetyl/butaryl transferase 5 327 1.5E-113 T 23-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RD1_RS05305 3b13c9699c04f4e6e0aab4fcc19cf0ed 35 Pfam PF08042 PqqA family 2 20 4.9E-11 T 23-04-2016 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 UniPathway: UPA00539 RD1_RS05305 3b13c9699c04f4e6e0aab4fcc19cf0ed 35 Hamap MF_00656 Coenzyme PQQ synthesis protein A [pqqA]. 2 24 10.404 T 23-04-2016 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 UniPathway: UPA00539 RD1_RS05305 3b13c9699c04f4e6e0aab4fcc19cf0ed 35 TIGRFAM TIGR02107 PQQ_syn_pqqA: coenzyme PQQ precursor peptide PqqA 3 20 3.6E-10 T 23-04-2016 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 UniPathway: UPA00539 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PANTHER PTHR11573:SF18 1167 1214 0.0 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PANTHER PTHR11573:SF18 826 928 0.0 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PANTHER PTHR11573:SF18 632 737 0.0 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PANTHER PTHR11573:SF18 183 300 0.0 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PANTHER PTHR11573:SF18 945 1109 0.0 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PANTHER PTHR11573:SF18 391 607 0.0 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PANTHER PTHR11573:SF18 100 152 0.0 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 Pfam PF08471 Class II vitamin B12-dependent ribonucleotide reductase 31 139 1.3E-37 T 23-04-2016 IPR013678 Ribonucleotide reductase class II vitamin B12-dependent, N-terminal domain GO:0004748|GO:0050897|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 Gene3D G3DSA:1.10.10.200 328 363 7.6E-4 T 23-04-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 SUPERFAMILY SSF51998 831 915 1.46E-121 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 SUPERFAMILY SSF51998 386 706 1.46E-121 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 SUPERFAMILY SSF51998 189 295 1.46E-121 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 121 740 1.9E-139 T 23-04-2016 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PANTHER PTHR11573 1167 1214 0.0 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PANTHER PTHR11573 826 928 0.0 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PANTHER PTHR11573 632 737 0.0 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PANTHER PTHR11573 183 300 0.0 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PANTHER PTHR11573 945 1109 0.0 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PANTHER PTHR11573 391 607 0.0 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PANTHER PTHR11573 100 152 0.0 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 Pfam PF02867 Ribonucleotide reductase, barrel domain 190 739 4.6E-103 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 Pfam PF02867 Ribonucleotide reductase, barrel domain 798 903 1.1E-15 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 Gene3D G3DSA:3.20.70.20 654 700 4.5E-95 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 Gene3D G3DSA:3.20.70.20 43 294 4.5E-95 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 Gene3D G3DSA:3.20.70.20 862 908 4.5E-95 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 Gene3D G3DSA:3.20.70.20 382 581 4.5E-95 T 23-04-2016 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PRINTS PR01183 Ribonucleotide reductase large chain signature 533 555 4.2E-5 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 PRINTS PR01183 Ribonucleotide reductase large chain signature 267 286 4.2E-5 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RD1_RS14660 d8f5399fabb9722c8d349948158d878b 1214 SUPERFAMILY SSF75625 288 375 5.23E-12 T 23-04-2016 IPR029072 YebC-like RD1_RS12055 76f8293cc75b1817bcfa43771a8fb919 189 PANTHER PTHR37425 1 187 1.3E-35 T 23-04-2016 RD1_RS12055 76f8293cc75b1817bcfa43771a8fb919 189 Gene3D G3DSA:3.30.1380.10 72 188 8.7E-28 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RD1_RS12055 76f8293cc75b1817bcfa43771a8fb919 189 Pfam PF05951 Bacterial protein of unknown function (DUF882) 41 187 2.7E-45 T 23-04-2016 IPR010275 Protein of unknown function DUF882 RD1_RS12055 76f8293cc75b1817bcfa43771a8fb919 189 SUPERFAMILY SSF55166 60 188 1.07E-33 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RD1_RS16775 4f03403644b930fc207826a554eae8bc 619 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 20 588 4.1E-142 T 23-04-2016 IPR011853 TRAP transporter, 4TM/12TM fusion protein RD1_RS16775 4f03403644b930fc207826a554eae8bc 619 PANTHER PTHR33362 66 560 1.9E-135 T 23-04-2016 RD1_RS16775 4f03403644b930fc207826a554eae8bc 619 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 105 541 1.1E-77 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS16775 4f03403644b930fc207826a554eae8bc 619 PANTHER PTHR33362:SF1 66 560 1.9E-135 T 23-04-2016 RD1_RS19405 2b8574f91d944f67b5b3bb6787ee7e89 425 Pfam PF13660 Domain of unknown function (DUF4147) 13 241 1.5E-67 T 23-04-2016 IPR025286 MOFRL-associated domain RD1_RS19405 2b8574f91d944f67b5b3bb6787ee7e89 425 SUPERFAMILY SSF82544 9 421 7.06E-120 T 23-04-2016 RD1_RS19405 2b8574f91d944f67b5b3bb6787ee7e89 425 PANTHER PTHR12227 7 425 1.4E-115 T 23-04-2016 RD1_RS19405 2b8574f91d944f67b5b3bb6787ee7e89 425 Gene3D G3DSA:3.40.50.10180 13 247 2.7E-75 T 23-04-2016 RD1_RS19405 2b8574f91d944f67b5b3bb6787ee7e89 425 PANTHER PTHR12227:SF0 7 425 1.4E-115 T 23-04-2016 RD1_RS19405 2b8574f91d944f67b5b3bb6787ee7e89 425 Gene3D G3DSA:3.40.1480.10 250 422 2.8E-52 T 23-04-2016 IPR007835 MOFRL domain RD1_RS19405 2b8574f91d944f67b5b3bb6787ee7e89 425 Pfam PF05161 MOFRL family 309 416 1.7E-35 T 23-04-2016 IPR007835 MOFRL domain RD1_RS14635 9d78d74f914ebc982d567ed06275626f 396 Gene3D G3DSA:3.90.1150.10 256 380 6.0E-29 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS14635 9d78d74f914ebc982d567ed06275626f 396 PANTHER PTHR11751:SF306 15 379 1.2E-83 T 23-04-2016 RD1_RS14635 9d78d74f914ebc982d567ed06275626f 396 PANTHER PTHR11751 15 379 1.2E-83 T 23-04-2016 RD1_RS14635 9d78d74f914ebc982d567ed06275626f 396 Pfam PF00155 Aminotransferase class I and II 38 379 2.8E-49 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS14635 9d78d74f914ebc982d567ed06275626f 396 SUPERFAMILY SSF53383 4 380 2.55E-89 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS14635 9d78d74f914ebc982d567ed06275626f 396 Gene3D G3DSA:3.40.640.10 49 255 2.4E-55 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS02675 5d2d13443b5538f5b26502f6a7ad1bf1 367 PRINTS PR01010 Flagellar P-ring protein signature 189 207 1.4E-74 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RD1_RS02675 5d2d13443b5538f5b26502f6a7ad1bf1 367 PRINTS PR01010 Flagellar P-ring protein signature 24 39 1.4E-74 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RD1_RS02675 5d2d13443b5538f5b26502f6a7ad1bf1 367 PRINTS PR01010 Flagellar P-ring protein signature 106 123 1.4E-74 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RD1_RS02675 5d2d13443b5538f5b26502f6a7ad1bf1 367 PRINTS PR01010 Flagellar P-ring protein signature 39 54 1.4E-74 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RD1_RS02675 5d2d13443b5538f5b26502f6a7ad1bf1 367 PRINTS PR01010 Flagellar P-ring protein signature 163 181 1.4E-74 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RD1_RS02675 5d2d13443b5538f5b26502f6a7ad1bf1 367 PRINTS PR01010 Flagellar P-ring protein signature 84 103 1.4E-74 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RD1_RS02675 5d2d13443b5538f5b26502f6a7ad1bf1 367 PRINTS PR01010 Flagellar P-ring protein signature 59 74 1.4E-74 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RD1_RS02675 5d2d13443b5538f5b26502f6a7ad1bf1 367 PRINTS PR01010 Flagellar P-ring protein signature 253 265 1.4E-74 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RD1_RS02675 5d2d13443b5538f5b26502f6a7ad1bf1 367 PRINTS PR01010 Flagellar P-ring protein signature 123 141 1.4E-74 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RD1_RS02675 5d2d13443b5538f5b26502f6a7ad1bf1 367 Pfam PF02119 Flagellar P-ring protein 24 366 5.7E-133 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RD1_RS02675 5d2d13443b5538f5b26502f6a7ad1bf1 367 PANTHER PTHR30381:SF0 1 367 1.3E-136 T 23-04-2016 RD1_RS02675 5d2d13443b5538f5b26502f6a7ad1bf1 367 PANTHER PTHR30381 1 367 1.3E-136 T 23-04-2016 RD1_RS02675 5d2d13443b5538f5b26502f6a7ad1bf1 367 Hamap MF_00416 Flagellar P-ring protein [flgI]. 3 367 35.062 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RD1_RS02090 e85515115cfca33e769cef59b4559986 185 SUPERFAMILY SSF56235 9 183 3.05E-55 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS02090 e85515115cfca33e769cef59b4559986 185 PIRSF PIRSF039093 6 185 2.2E-78 T 23-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RD1_RS02090 e85515115cfca33e769cef59b4559986 185 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 12 183 1.8E-77 T 23-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RD1_RS02090 e85515115cfca33e769cef59b4559986 185 Gene3D G3DSA:3.60.20.10 12 184 5.4E-78 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS02090 e85515115cfca33e769cef59b4559986 185 Pfam PF00227 Proteasome subunit 10 183 3.5E-24 T 23-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 RD1_RS02090 e85515115cfca33e769cef59b4559986 185 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 11 183 39.245 T 23-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RD1_RS02090 e85515115cfca33e769cef59b4559986 185 PANTHER PTHR32194 9 183 5.3E-104 T 23-04-2016 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 PRINTS PR00313 NodO calcium binding signature 461 472 4.2E-9 T 23-04-2016 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 PRINTS PR00313 NodO calcium binding signature 694 702 4.2E-9 T 23-04-2016 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 PRINTS PR00313 NodO calcium binding signature 676 684 4.2E-9 T 23-04-2016 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 PRINTS PR00313 NodO calcium binding signature 730 739 4.2E-9 T 23-04-2016 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 SUPERFAMILY SSF51120 420 577 1.12E-19 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 SUPERFAMILY SSF51120 698 870 8.72E-24 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 SUPERFAMILY SSF51120 888 1073 1.5E-27 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 766 782 0.013 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 675 692 0.014 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 891 908 0.13 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 556 571 0.6 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 640 655 7.5 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 928 944 0.02 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 802 818 0.032 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 864 881 0.002 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 786 800 0.13 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 851 863 4.8 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 838 849 3.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 963 980 0.037 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 711 728 27.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 946 962 0.008 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 909 926 0.2 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 819 836 0.0027 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 694 708 9.3E-4 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 658 673 9.7 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 440 451 8.6 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 729 746 0.29 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 537 553 0.18 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 510 526 15.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 924 942 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 960 978 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 942 960 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 951 969 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 852 870 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 870 888 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 735 753 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 807 825 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 789 807 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 681 699 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 762 780 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 798 816 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 780 798 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 726 744 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 690 708 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 SUPERFAMILY SSF51120 573 708 3.27E-20 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Gene3D G3DSA:2.150.10.10 848 1020 1.1E-43 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Gene3D G3DSA:2.150.10.10 421 574 1.3E-17 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Gene3D G3DSA:2.150.10.10 725 847 3.8E-32 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS03990 e910b3ce13d63700dc487e733cdf4033 1093 Gene3D G3DSA:2.150.10.10 575 724 1.2E-25 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS16185 3564769f735ee7e364b0c23a6c868502 103 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 23-04-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 RD1_RS16185 3564769f735ee7e364b0c23a6c868502 103 SUPERFAMILY SSF50129 1 94 3.86E-33 T 23-04-2016 IPR011032 GroES-like RD1_RS16185 3564769f735ee7e364b0c23a6c868502 103 PRINTS PR00297 10kDa chaperonin signature 3 18 1.3E-30 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS16185 3564769f735ee7e364b0c23a6c868502 103 PRINTS PR00297 10kDa chaperonin signature 60 72 1.3E-30 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS16185 3564769f735ee7e364b0c23a6c868502 103 PRINTS PR00297 10kDa chaperonin signature 25 46 1.3E-30 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS16185 3564769f735ee7e364b0c23a6c868502 103 PRINTS PR00297 10kDa chaperonin signature 81 94 1.3E-30 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS16185 3564769f735ee7e364b0c23a6c868502 103 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 8.0E-35 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS16185 3564769f735ee7e364b0c23a6c868502 103 SMART SM00883 2 94 2.8E-55 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS16185 3564769f735ee7e364b0c23a6c868502 103 Gene3D G3DSA:2.30.33.40 2 94 5.4E-37 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS16185 3564769f735ee7e364b0c23a6c868502 103 PANTHER PTHR10772 1 94 2.6E-43 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS16185 3564769f735ee7e364b0c23a6c868502 103 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 25.513 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RD1_RS18375 b1629429ea00725e72a5c8057dc80166 289 PANTHER PTHR22911 1 283 5.5E-41 T 23-04-2016 RD1_RS18375 b1629429ea00725e72a5c8057dc80166 289 SUPERFAMILY SSF103481 41 143 1.44E-11 T 23-04-2016 RD1_RS18375 b1629429ea00725e72a5c8057dc80166 289 SUPERFAMILY SSF103481 194 282 3.79E-11 T 23-04-2016 RD1_RS18375 b1629429ea00725e72a5c8057dc80166 289 Pfam PF00892 EamA-like transporter family 6 139 1.2E-13 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS18375 b1629429ea00725e72a5c8057dc80166 289 Pfam PF00892 EamA-like transporter family 148 276 4.3E-7 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS03180 114e8501928e2df24f404fe050d64da8 174 Gene3D G3DSA:1.10.10.10 114 174 1.2E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03180 114e8501928e2df24f404fe050d64da8 174 Gene3D G3DSA:1.10.1740.10 6 107 1.7E-22 T 23-04-2016 RD1_RS03180 114e8501928e2df24f404fe050d64da8 174 Pfam PF04545 Sigma-70, region 4 122 171 1.0E-14 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS03180 114e8501928e2df24f404fe050d64da8 174 Pfam PF04542 Sigma-70 region 2 22 90 7.4E-16 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS03180 114e8501928e2df24f404fe050d64da8 174 SUPERFAMILY SSF88946 7 102 1.7E-22 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS03180 114e8501928e2df24f404fe050d64da8 174 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 18 173 1.1E-27 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS03180 114e8501928e2df24f404fe050d64da8 174 SUPERFAMILY SSF88659 112 173 1.79E-14 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS03180 114e8501928e2df24f404fe050d64da8 174 PANTHER PTHR30173 14 173 2.8E-49 T 23-04-2016 RD1_RS03180 114e8501928e2df24f404fe050d64da8 174 PANTHER PTHR30173:SF31 14 173 2.8E-49 T 23-04-2016 RD1_RS16285 97eb07ba79258b23054854cc538c3115 257 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 174 257 8.9E-25 T 23-04-2016 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 RD1_RS16285 97eb07ba79258b23054854cc538c3115 257 SUPERFAMILY SSF56281 6 257 4.2E-64 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS16285 97eb07ba79258b23054854cc538c3115 257 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 5 257 42.13 T 23-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 RD1_RS16285 97eb07ba79258b23054854cc538c3115 257 SMART SM00849 15 173 4.6E-30 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS16285 97eb07ba79258b23054854cc538c3115 257 PANTHER PTHR11935 1 257 1.3E-85 T 23-04-2016 RD1_RS16285 97eb07ba79258b23054854cc538c3115 257 PANTHER PTHR11935:SF7 1 257 1.3E-85 T 23-04-2016 RD1_RS16285 97eb07ba79258b23054854cc538c3115 257 Gene3D G3DSA:3.60.15.10 8 257 1.1E-78 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS16285 97eb07ba79258b23054854cc538c3115 257 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 7 257 7.6E-99 T 23-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 RD1_RS16285 97eb07ba79258b23054854cc538c3115 257 Pfam PF00753 Metallo-beta-lactamase superfamily 40 173 2.2E-13 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS16285 97eb07ba79258b23054854cc538c3115 257 PIRSF PIRSF005457 1 257 4.8E-103 T 23-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 RD1_RS08360 ab69d0a702340c458b23c615912b8dc2 102 SUPERFAMILY SSF50978 45 100 3.07E-5 T 23-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 SUPERFAMILY SSF51120 985 1124 6.67E-15 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 SUPERFAMILY SSF51120 2424 2601 2.3E-21 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 SUPERFAMILY SSF51120 2267 2373 3.14E-19 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 SUPERFAMILY SSF51120 820 890 5.89E-14 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2418 2436 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2382 2400 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2454 2472 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2328 2346 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2310 2328 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1085 1103 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2346 2364 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2499 2517 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2526 2544 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2508 2526 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2517 2535 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2445 2463 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2427 2445 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2319 2337 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2373 2391 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1094 1112 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2403 2420 34.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2538 2555 0.42 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1080 1096 0.54 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2502 2519 0.54 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2422 2438 12.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1612 1628 33.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 845 861 0.61 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2314 2330 0.012 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2475 2492 0.062 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1097 1113 5.8 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2349 2365 0.07 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2367 2384 0.045 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2296 2311 26.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2521 2537 0.1 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1180 1196 0.069 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1418 1435 18.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2386 2402 0.001 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 864 879 1.2 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1595 1610 36.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2331 2348 0.33 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1748 1760 14.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2458 2473 0.057 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Gene3D G3DSA:2.150.10.10 1748 1825 1.5E-36 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Gene3D G3DSA:2.150.10.10 966 1123 5.5E-13 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Gene3D G3DSA:2.150.10.10 2287 2367 1.5E-36 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Gene3D G3DSA:2.150.10.10 1152 1238 9.8E-14 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Gene3D G3DSA:2.150.10.10 818 888 7.5E-13 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Gene3D G3DSA:2.150.10.10 1399 1440 9.8E-14 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Gene3D G3DSA:2.150.10.10 2444 2594 4.9E-32 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 Gene3D G3DSA:2.150.10.10 1335 1366 9.8E-14 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 PRINTS PR00313 NodO calcium binding signature 1613 1622 2.1E-5 T 23-04-2016 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 PRINTS PR00313 NodO calcium binding signature 1514 1522 2.1E-5 T 23-04-2016 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 PRINTS PR00313 NodO calcium binding signature 1171 1179 2.1E-5 T 23-04-2016 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 PRINTS PR00313 NodO calcium binding signature 1015 1026 2.1E-5 T 23-04-2016 RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 SUPERFAMILY SSF51120 1105 1221 6.28E-10 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 SUPERFAMILY SSF51120 1593 1682 2.09E-9 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS14110 e22148a1f7cd77c4555cbf6596649163 2666 SUPERFAMILY SSF51120 1747 1843 2.09E-9 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 4 226 40.245 T 23-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 Gene3D G3DSA:3.40.50.10490 159 236 1.4E-63 T 23-04-2016 RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 Gene3D G3DSA:3.40.50.10490 25 101 1.4E-63 T 23-04-2016 RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 SUPERFAMILY SSF52313 8 234 4.45E-89 T 23-04-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 159 183 - T 23-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 PRINTS PR00395 Ribosomal protein S2 signature 89 106 9.9E-39 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 PRINTS PR00395 Ribosomal protein S2 signature 39 48 9.9E-39 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 PRINTS PR00395 Ribosomal protein S2 signature 176 187 9.9E-39 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 PRINTS PR00395 Ribosomal protein S2 signature 197 211 9.9E-39 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 PRINTS PR00395 Ribosomal protein S2 signature 159 176 9.9E-39 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 PRINTS PR00395 Ribosomal protein S2 signature 8 26 9.9E-39 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 Pfam PF00318 Ribosomal protein S2 11 225 1.0E-91 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 8 19 - T 23-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 PANTHER PTHR12534 6 244 3.4E-108 T 23-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 7 226 3.7E-98 T 23-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RD1_RS12210 967e5c80af458516a4610e89f1661e72 260 Gene3D G3DSA:1.10.287.610 102 153 1.8E-20 T 23-04-2016 RD1_RS03150 4039e84bf48ab34e877c8ab2b9993113 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 251 3.8E-58 T 23-04-2016 RD1_RS03150 4039e84bf48ab34e877c8ab2b9993113 253 SUPERFAMILY SSF51735 7 251 4.41E-71 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03150 4039e84bf48ab34e877c8ab2b9993113 253 Gene3D G3DSA:3.40.50.720 5 251 9.9E-71 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03150 4039e84bf48ab34e877c8ab2b9993113 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 5.3E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03150 4039e84bf48ab34e877c8ab2b9993113 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 5.3E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03150 4039e84bf48ab34e877c8ab2b9993113 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 5.3E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03150 4039e84bf48ab34e877c8ab2b9993113 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 1.1E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03150 4039e84bf48ab34e877c8ab2b9993113 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 1.1E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03150 4039e84bf48ab34e877c8ab2b9993113 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 1.1E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03150 4039e84bf48ab34e877c8ab2b9993113 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.1E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03150 4039e84bf48ab34e877c8ab2b9993113 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 1.1E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03150 4039e84bf48ab34e877c8ab2b9993113 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.1E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03150 4039e84bf48ab34e877c8ab2b9993113 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS03150 4039e84bf48ab34e877c8ab2b9993113 253 PANTHER PTHR24321 4 252 8.2E-119 T 23-04-2016 RD1_RS13415 4972ffd22d95500db94635f5093100fa 254 PIRSF PIRSF004846 1 252 6.8E-66 T 23-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 RD1_RS13415 4972ffd22d95500db94635f5093100fa 254 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 30 247 3.2E-56 T 23-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 RD1_RS13415 4972ffd22d95500db94635f5093100fa 254 PANTHER PTHR30632 20 249 1.7E-56 T 23-04-2016 RD1_RS13415 4972ffd22d95500db94635f5093100fa 254 PANTHER PTHR30632:SF0 20 249 1.7E-56 T 23-04-2016 RD1_RS13415 4972ffd22d95500db94635f5093100fa 254 Gene3D G3DSA:3.40.190.10 104 212 6.3E-35 T 23-04-2016 RD1_RS13415 4972ffd22d95500db94635f5093100fa 254 SUPERFAMILY SSF53850 24 250 2.05E-63 T 23-04-2016 RD1_RS13415 4972ffd22d95500db94635f5093100fa 254 Pfam PF13531 Bacterial extracellular solute-binding protein 25 249 1.6E-40 T 23-04-2016 RD1_RS13415 4972ffd22d95500db94635f5093100fa 254 Gene3D G3DSA:3.40.190.10 213 249 1.1E-17 T 23-04-2016 RD1_RS13415 4972ffd22d95500db94635f5093100fa 254 Gene3D G3DSA:3.40.190.10 23 103 1.1E-17 T 23-04-2016 RD1_RS13395 476ea3ee5aa0e7d43d4b9560d8329e92 268 Pfam PF12849 PBP superfamily domain 24 243 1.7E-17 T 23-04-2016 IPR024370 PBP domain RD1_RS13395 476ea3ee5aa0e7d43d4b9560d8329e92 268 Gene3D G3DSA:3.40.190.10 215 253 1.2E-7 T 23-04-2016 RD1_RS13395 476ea3ee5aa0e7d43d4b9560d8329e92 268 Gene3D G3DSA:3.40.190.10 32 111 1.2E-7 T 23-04-2016 RD1_RS13395 476ea3ee5aa0e7d43d4b9560d8329e92 268 PANTHER PTHR37945 8 268 2.6E-79 T 23-04-2016 RD1_RS13395 476ea3ee5aa0e7d43d4b9560d8329e92 268 SUPERFAMILY SSF53850 22 253 2.72E-23 T 23-04-2016 RD1_RS13395 476ea3ee5aa0e7d43d4b9560d8329e92 268 Gene3D G3DSA:3.40.190.10 112 214 2.6E-37 T 23-04-2016 RD1_RS09005 e7c696ae11431ab44d8ecb0e9ceaa164 845 PANTHER PTHR22931:SF9 90 845 1.4E-259 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RD1_RS09005 e7c696ae11431ab44d8ecb0e9ceaa164 845 Gene3D G3DSA:3.30.1490.20 165 207 2.3E-9 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS09005 e7c696ae11431ab44d8ecb0e9ceaa164 845 Gene3D G3DSA:3.30.1490.20 19 94 2.3E-9 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RD1_RS09005 e7c696ae11431ab44d8ecb0e9ceaa164 845 Gene3D G3DSA:1.10.189.10 314 369 7.1E-24 T 23-04-2016 RD1_RS09005 e7c696ae11431ab44d8ecb0e9ceaa164 845 PANTHER PTHR22931 90 845 1.4E-259 T 23-04-2016 RD1_RS09005 e7c696ae11431ab44d8ecb0e9ceaa164 845 Gene3D G3DSA:3.30.470.20 214 309 1.1E-14 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS09005 e7c696ae11431ab44d8ecb0e9ceaa164 845 Gene3D G3DSA:3.20.20.60 503 840 3.0E-127 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS09005 e7c696ae11431ab44d8ecb0e9ceaa164 845 SUPERFAMILY SSF51621 483 840 6.54E-121 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS09005 e7c696ae11431ab44d8ecb0e9ceaa164 845 SUPERFAMILY SSF52009 353 481 7.98E-35 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RD1_RS09005 e7c696ae11431ab44d8ecb0e9ceaa164 845 SUPERFAMILY SSF56059 6 350 1.65E-77 T 23-04-2016 RD1_RS09005 e7c696ae11431ab44d8ecb0e9ceaa164 845 Pfam PF00391 PEP-utilising enzyme, mobile domain 391 473 1.4E-24 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RD1_RS09005 e7c696ae11431ab44d8ecb0e9ceaa164 845 Gene3D G3DSA:3.50.30.10 370 476 1.3E-36 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RD1_RS09005 e7c696ae11431ab44d8ecb0e9ceaa164 845 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 489 838 2.6E-82 T 23-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RD1_RS09005 e7c696ae11431ab44d8ecb0e9ceaa164 845 PIRSF PIRSF000853 17 845 2.2E-283 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RD1_RS14925 16f05588aeb967806c1b923e3c753a9b 400 SMART SM00257 71 115 1.3 T 23-04-2016 IPR018392 LysM domain RD1_RS14925 16f05588aeb967806c1b923e3c753a9b 400 SMART SM00257 182 226 2.1E-8 T 23-04-2016 IPR018392 LysM domain RD1_RS14925 16f05588aeb967806c1b923e3c753a9b 400 PANTHER PTHR21666:SF200 278 400 1.3E-16 T 23-04-2016 RD1_RS14925 16f05588aeb967806c1b923e3c753a9b 400 Pfam PF01476 LysM domain 183 226 2.4E-7 T 23-04-2016 IPR018392 LysM domain RD1_RS14925 16f05588aeb967806c1b923e3c753a9b 400 Pfam PF01476 LysM domain 76 115 0.0016 T 23-04-2016 IPR018392 LysM domain RD1_RS14925 16f05588aeb967806c1b923e3c753a9b 400 PANTHER PTHR21666 278 400 1.3E-16 T 23-04-2016 RD1_RS14925 16f05588aeb967806c1b923e3c753a9b 400 SUPERFAMILY SSF54106 181 226 2.35E-9 T 23-04-2016 IPR018392 LysM domain RD1_RS14925 16f05588aeb967806c1b923e3c753a9b 400 SUPERFAMILY SSF51261 262 399 1.2E-19 T 23-04-2016 IPR011055 Duplicated hybrid motif RD1_RS14925 16f05588aeb967806c1b923e3c753a9b 400 Gene3D G3DSA:3.10.350.10 180 227 6.1E-11 T 23-04-2016 IPR018392 LysM domain RD1_RS14925 16f05588aeb967806c1b923e3c753a9b 400 Gene3D G3DSA:3.10.350.10 76 115 1.2E-4 T 23-04-2016 IPR018392 LysM domain RD1_RS14925 16f05588aeb967806c1b923e3c753a9b 400 Gene3D G3DSA:2.70.70.10 280 400 4.1E-23 T 23-04-2016 RD1_RS14925 16f05588aeb967806c1b923e3c753a9b 400 Pfam PF01551 Peptidase family M23 305 395 6.2E-15 T 23-04-2016 IPR016047 Peptidase M23 RD1_RS15445 66e9bb50b0d9b32459157c1a5eee7547 493 Gene3D G3DSA:3.40.1190.10 106 338 3.9E-66 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15445 66e9bb50b0d9b32459157c1a5eee7547 493 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 22 483 1.6E-129 T 23-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 RD1_RS15445 66e9bb50b0d9b32459157c1a5eee7547 493 PANTHER PTHR23135:SF4 10 481 7.6E-143 T 23-04-2016 RD1_RS15445 66e9bb50b0d9b32459157c1a5eee7547 493 Pfam PF01225 Mur ligase family, catalytic domain 23 101 2.4E-10 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15445 66e9bb50b0d9b32459157c1a5eee7547 493 Gene3D G3DSA:3.90.190.20 339 478 2.7E-48 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RD1_RS15445 66e9bb50b0d9b32459157c1a5eee7547 493 SUPERFAMILY SSF53623 106 332 8.63E-69 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15445 66e9bb50b0d9b32459157c1a5eee7547 493 SUPERFAMILY SSF53244 335 482 5.36E-43 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RD1_RS15445 66e9bb50b0d9b32459157c1a5eee7547 493 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 6 485 29.629 T 23-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 RD1_RS15445 66e9bb50b0d9b32459157c1a5eee7547 493 PANTHER PTHR23135 10 481 7.6E-143 T 23-04-2016 RD1_RS15445 66e9bb50b0d9b32459157c1a5eee7547 493 Pfam PF02875 Mur ligase family, glutamate ligase domain 335 420 9.7E-22 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RD1_RS15445 66e9bb50b0d9b32459157c1a5eee7547 493 Gene3D G3DSA:3.40.1390.10 17 104 5.6E-18 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15445 66e9bb50b0d9b32459157c1a5eee7547 493 Pfam PF08245 Mur ligase middle domain 113 314 5.9E-48 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS15445 66e9bb50b0d9b32459157c1a5eee7547 493 SUPERFAMILY SSF63418 17 104 4.97E-18 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RD1_RS05820 357c607ec295edf54977ece2519ca563 167 PANTHER PTHR11961 29 162 3.7E-29 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS05820 357c607ec295edf54977ece2519ca563 167 Gene3D G3DSA:1.10.760.10 66 166 3.2E-33 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS05820 357c607ec295edf54977ece2519ca563 167 PANTHER PTHR11961:SF6 29 162 3.7E-29 T 23-04-2016 RD1_RS05820 357c607ec295edf54977ece2519ca563 167 Pfam PF00034 Cytochrome c 70 165 2.9E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS05820 357c607ec295edf54977ece2519ca563 167 SUPERFAMILY SSF46626 66 166 5.09E-27 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS05820 357c607ec295edf54977ece2519ca563 167 PRINTS PR00604 Class IA and IB cytochrome C signature 156 164 6.4E-15 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS05820 357c607ec295edf54977ece2519ca563 167 PRINTS PR00604 Class IA and IB cytochrome C signature 120 136 6.4E-15 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS05820 357c607ec295edf54977ece2519ca563 167 PRINTS PR00604 Class IA and IB cytochrome C signature 78 85 6.4E-15 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS05820 357c607ec295edf54977ece2519ca563 167 PRINTS PR00604 Class IA and IB cytochrome C signature 106 116 6.4E-15 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS05820 357c607ec295edf54977ece2519ca563 167 PRINTS PR00604 Class IA and IB cytochrome C signature 90 105 6.4E-15 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS05820 357c607ec295edf54977ece2519ca563 167 PRINTS PR00604 Class IA and IB cytochrome C signature 139 149 6.4E-15 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RD1_RS17625 ba076d6a11a1212b71d7f3868185e969 143 Pfam PF13471 Transglutaminase-like superfamily 14 131 1.6E-23 T 23-04-2016 IPR032708 Microcin J25-processing protein McjB, C-terminal RD1_RS03405 2328ad8db440bfad7f81dd48916bdfda 289 Pfam PF00701 Dihydrodipicolinate synthetase family 5 239 3.6E-32 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RD1_RS03405 2328ad8db440bfad7f81dd48916bdfda 289 SUPERFAMILY SSF51569 5 282 1.57E-55 T 23-04-2016 RD1_RS03405 2328ad8db440bfad7f81dd48916bdfda 289 PANTHER PTHR12128 1 283 6.4E-51 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RD1_RS03405 2328ad8db440bfad7f81dd48916bdfda 289 SMART SM01130 2 286 3.8E-46 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RD1_RS03405 2328ad8db440bfad7f81dd48916bdfda 289 PIRSF PIRSF001365 4 288 6.2E-52 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RD1_RS03405 2328ad8db440bfad7f81dd48916bdfda 289 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 5.3E-7 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RD1_RS03405 2328ad8db440bfad7f81dd48916bdfda 289 PRINTS PR00146 Dihydrodipicolinate synthase signature 132 149 5.3E-7 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RD1_RS03405 2328ad8db440bfad7f81dd48916bdfda 289 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 5.3E-7 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RD1_RS03405 2328ad8db440bfad7f81dd48916bdfda 289 Gene3D G3DSA:3.20.20.70 5 282 6.1E-58 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS19250 61ec8085c3c6711756457fef96989e47 354 SUPERFAMILY SSF51269 288 353 2.22E-11 T 23-04-2016 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal RD1_RS19250 61ec8085c3c6711756457fef96989e47 354 SUPERFAMILY SSF51569 16 303 2.69E-68 T 23-04-2016 RD1_RS19250 61ec8085c3c6711756457fef96989e47 354 SMART SM00858 296 354 7.7E-9 T 23-04-2016 IPR013974 SAF domain RD1_RS19250 61ec8085c3c6711756457fef96989e47 354 PANTHER PTHR23416 17 305 7.4E-77 T 23-04-2016 RD1_RS19250 61ec8085c3c6711756457fef96989e47 354 Gene3D G3DSA:3.20.20.70 16 280 6.8E-78 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS19250 61ec8085c3c6711756457fef96989e47 354 Gene3D G3DSA:3.90.1210.10 293 353 5.8E-10 T 23-04-2016 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal RD1_RS19250 61ec8085c3c6711756457fef96989e47 354 Pfam PF08666 SAF domain 299 353 4.0E-9 T 23-04-2016 IPR013974 SAF domain RD1_RS19250 61ec8085c3c6711756457fef96989e47 354 Pfam PF03102 NeuB family 37 281 2.9E-63 T 23-04-2016 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 RD1_RS19250 61ec8085c3c6711756457fef96989e47 354 PANTHER PTHR23416:SF62 17 305 7.4E-77 T 23-04-2016 RD1_RS10250 378c6be799e04876c6a9d18fafb95632 320 Gene3D G3DSA:3.40.50.300 19 257 8.3E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10250 378c6be799e04876c6a9d18fafb95632 320 SMART SM00382 44 233 4.6E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS10250 378c6be799e04876c6a9d18fafb95632 320 PANTHER PTHR24220 32 320 1.1E-131 T 23-04-2016 RD1_RS10250 378c6be799e04876c6a9d18fafb95632 320 PANTHER PTHR24220 5 15 1.1E-131 T 23-04-2016 RD1_RS10250 378c6be799e04876c6a9d18fafb95632 320 Pfam PF00005 ABC transporter 36 184 8.1E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS10250 378c6be799e04876c6a9d18fafb95632 320 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 318 3.1E-26 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RD1_RS10250 378c6be799e04876c6a9d18fafb95632 320 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 299 8.8E-18 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RD1_RS10250 378c6be799e04876c6a9d18fafb95632 320 PANTHER PTHR24220:SF336 32 320 1.1E-131 T 23-04-2016 RD1_RS10250 378c6be799e04876c6a9d18fafb95632 320 PANTHER PTHR24220:SF336 5 15 1.1E-131 T 23-04-2016 RD1_RS10250 378c6be799e04876c6a9d18fafb95632 320 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS10250 378c6be799e04876c6a9d18fafb95632 320 SUPERFAMILY SSF52540 47 309 3.26E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07425 9286918c085b2d4ad3d6347657c1016c 986 SUPERFAMILY SSF52518 614 829 1.96E-52 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS07425 9286918c085b2d4ad3d6347657c1016c 986 PANTHER PTHR23152 12 984 0.0 T 23-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RD1_RS07425 9286918c085b2d4ad3d6347657c1016c 986 SMART SM00861 630 823 4.9E-58 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RD1_RS07425 9286918c085b2d4ad3d6347657c1016c 986 SUPERFAMILY SSF52518 153 576 1.67E-92 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS07425 9286918c085b2d4ad3d6347657c1016c 986 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 101 980 0.0 T 23-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RD1_RS07425 9286918c085b2d4ad3d6347657c1016c 986 PIRSF PIRSF000157 1 983 0.0 T 23-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RD1_RS07425 9286918c085b2d4ad3d6347657c1016c 986 Gene3D G3DSA:3.40.50.970 194 580 3.8E-76 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS07425 9286918c085b2d4ad3d6347657c1016c 986 PANTHER PTHR23152:SF4 12 984 0.0 T 23-04-2016 RD1_RS07425 9286918c085b2d4ad3d6347657c1016c 986 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 13 52 1.6E-16 T 23-04-2016 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RD1_RS07425 9286918c085b2d4ad3d6347657c1016c 986 Pfam PF02779 Transketolase, pyrimidine binding domain 629 824 3.8E-66 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RD1_RS07425 9286918c085b2d4ad3d6347657c1016c 986 Pfam PF00676 Dehydrogenase E1 component 245 561 4.6E-57 T 23-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 RD1_RS07425 9286918c085b2d4ad3d6347657c1016c 986 Gene3D G3DSA:3.40.50.970 672 833 3.4E-22 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS07425 9286918c085b2d4ad3d6347657c1016c 986 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 828 981 9.0E-53 T 23-04-2016 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RD1_RS13740 24d47d9dc0c8a9fc363138f97b6dc033 166 PANTHER PTHR21342 1 162 9.7E-60 T 23-04-2016 RD1_RS13740 24d47d9dc0c8a9fc363138f97b6dc033 166 SUPERFAMILY SSF52374 1 160 9.12E-40 T 23-04-2016 RD1_RS13740 24d47d9dc0c8a9fc363138f97b6dc033 166 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 163 32.756 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RD1_RS13740 24d47d9dc0c8a9fc363138f97b6dc033 166 PANTHER PTHR21342:SF1 1 162 9.7E-60 T 23-04-2016 RD1_RS13740 24d47d9dc0c8a9fc363138f97b6dc033 166 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 161 1.1E-56 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RD1_RS13740 24d47d9dc0c8a9fc363138f97b6dc033 166 Pfam PF01467 Cytidylyltransferase-like 5 136 6.3E-16 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RD1_RS13740 24d47d9dc0c8a9fc363138f97b6dc033 166 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 117 139 5.5E-33 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RD1_RS13740 24d47d9dc0c8a9fc363138f97b6dc033 166 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 90 106 5.5E-33 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RD1_RS13740 24d47d9dc0c8a9fc363138f97b6dc033 166 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 5.5E-33 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RD1_RS13740 24d47d9dc0c8a9fc363138f97b6dc033 166 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 5.5E-33 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RD1_RS13740 24d47d9dc0c8a9fc363138f97b6dc033 166 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 57 3.8E-17 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RD1_RS13740 24d47d9dc0c8a9fc363138f97b6dc033 166 Gene3D G3DSA:3.40.50.620 1 161 2.7E-49 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS18145 6255e0629afb81aaa85b68c148ff723f 123 Pfam PF00376 MerR family regulatory protein 9 42 8.0E-7 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RD1_RS18145 6255e0629afb81aaa85b68c148ff723f 123 Gene3D G3DSA:1.10.1660.10 4 58 2.1E-17 T 23-04-2016 RD1_RS18145 6255e0629afb81aaa85b68c148ff723f 123 Gene3D G3DSA:1.10.1660.10 59 118 4.2E-14 T 23-04-2016 RD1_RS18145 6255e0629afb81aaa85b68c148ff723f 123 Pfam PF09278 MerR, DNA binding 47 113 7.0E-13 T 23-04-2016 IPR015358 Transcription regulator MerR, DNA binding RD1_RS18145 6255e0629afb81aaa85b68c148ff723f 123 PANTHER PTHR30204 1 113 7.9E-14 T 23-04-2016 RD1_RS18145 6255e0629afb81aaa85b68c148ff723f 123 SMART SM00422 6 73 7.6E-11 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RD1_RS18145 6255e0629afb81aaa85b68c148ff723f 123 SUPERFAMILY SSF46955 7 116 5.13E-22 T 23-04-2016 IPR009061 Putative DNA-binding domain RD1_RS07285 5a8584d67cc25486a8eff3bd2a4f3e69 404 PANTHER PTHR13693:SF57 2 401 2.1E-215 T 23-04-2016 RD1_RS07285 5a8584d67cc25486a8eff3bd2a4f3e69 404 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 244 253 - T 23-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 RD1_RS07285 5a8584d67cc25486a8eff3bd2a4f3e69 404 Gene3D G3DSA:3.90.1150.10 281 392 4.6E-29 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS07285 5a8584d67cc25486a8eff3bd2a4f3e69 404 Gene3D G3DSA:3.40.640.10 64 280 1.9E-85 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS07285 5a8584d67cc25486a8eff3bd2a4f3e69 404 Pfam PF00155 Aminotransferase class I and II 46 390 6.0E-77 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS07285 5a8584d67cc25486a8eff3bd2a4f3e69 404 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 1 401 1.1E-189 T 23-04-2016 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: REACT_9431|UniPathway: UPA00251 RD1_RS07285 5a8584d67cc25486a8eff3bd2a4f3e69 404 PANTHER PTHR13693 2 401 2.1E-215 T 23-04-2016 RD1_RS07285 5a8584d67cc25486a8eff3bd2a4f3e69 404 SUPERFAMILY SSF53383 2 396 4.6E-107 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS07510 c0f5dcc31989c8051a02b7844fa880c0 127 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 7 122 6.0E-29 T 23-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 RD1_RS07510 c0f5dcc31989c8051a02b7844fa880c0 127 SUPERFAMILY SSF81343 1 126 6.05E-35 T 23-04-2016 RD1_RS07510 c0f5dcc31989c8051a02b7844fa880c0 127 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 84 97 - T 23-04-2016 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 UniPathway: UPA00223 RD1_RS07510 c0f5dcc31989c8051a02b7844fa880c0 127 Gene3D G3DSA:1.20.1300.10 3 126 3.2E-42 T 23-04-2016 RD1_RS07510 c0f5dcc31989c8051a02b7844fa880c0 127 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 8 125 2.8E-35 T 23-04-2016 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 UniPathway: UPA00223 RD1_RS07510 c0f5dcc31989c8051a02b7844fa880c0 127 PIRSF PIRSF000178 1 127 5.7E-40 T 23-04-2016 RD1_RS07510 c0f5dcc31989c8051a02b7844fa880c0 127 PANTHER PTHR10978 6 127 4.3E-34 T 23-04-2016 RD1_RS03275 0988f9657777f727fdfbd4f41cdb3813 257 Pfam PF07885 Ion channel 145 217 7.2E-15 T 23-04-2016 IPR013099 Potassium channel domain RD1_RS03275 0988f9657777f727fdfbd4f41cdb3813 257 Gene3D G3DSA:1.10.287.70 31 211 1.6E-26 T 23-04-2016 RD1_RS03275 0988f9657777f727fdfbd4f41cdb3813 257 SUPERFAMILY SSF81324 20 213 9.28E-26 T 23-04-2016 RD1_RS07170 08496a237e16fcdf62b53734e10b98bd 300 PANTHER PTHR30040:SF2 2 295 4.4E-46 T 23-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 RD1_RS07170 08496a237e16fcdf62b53734e10b98bd 300 SUPERFAMILY SSF143631 35 296 1.36E-56 T 23-04-2016 IPR003374 ApbE-like domain RD1_RS07170 08496a237e16fcdf62b53734e10b98bd 300 PANTHER PTHR30040 2 295 4.4E-46 T 23-04-2016 RD1_RS07170 08496a237e16fcdf62b53734e10b98bd 300 Pfam PF02424 ApbE family 61 290 8.5E-45 T 23-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 RD1_RS12770 00fd15053f1e0ebede3d27354430752d 303 SUPERFAMILY SSF103481 201 291 4.18E-10 T 23-04-2016 RD1_RS12770 00fd15053f1e0ebede3d27354430752d 303 SUPERFAMILY SSF103481 45 143 4.18E-11 T 23-04-2016 RD1_RS12770 00fd15053f1e0ebede3d27354430752d 303 PANTHER PTHR12715 12 294 1.2E-55 T 23-04-2016 RD1_RS12770 00fd15053f1e0ebede3d27354430752d 303 Pfam PF00892 EamA-like transporter family 160 291 8.3E-16 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS12770 00fd15053f1e0ebede3d27354430752d 303 Pfam PF00892 EamA-like transporter family 11 142 1.1E-16 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS12770 00fd15053f1e0ebede3d27354430752d 303 PANTHER PTHR12715:SF17 12 294 1.2E-55 T 23-04-2016 RD1_RS13000 60464c3f5186e63b150d03ee9d9d0c55 407 Gene3D G3DSA:3.40.640.10 65 281 5.1E-86 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS13000 60464c3f5186e63b150d03ee9d9d0c55 407 PANTHER PTHR13693 2 404 3.7E-220 T 23-04-2016 RD1_RS13000 60464c3f5186e63b150d03ee9d9d0c55 407 Pfam PF00155 Aminotransferase class I and II 47 390 7.8E-72 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS13000 60464c3f5186e63b150d03ee9d9d0c55 407 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 2 402 7.2E-203 T 23-04-2016 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: REACT_9431|UniPathway: UPA00251 RD1_RS13000 60464c3f5186e63b150d03ee9d9d0c55 407 PANTHER PTHR13693:SF57 2 404 3.7E-220 T 23-04-2016 RD1_RS13000 60464c3f5186e63b150d03ee9d9d0c55 407 Gene3D G3DSA:3.90.1150.10 282 393 1.9E-24 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS13000 60464c3f5186e63b150d03ee9d9d0c55 407 SUPERFAMILY SSF53383 4 396 3.67E-111 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS13000 60464c3f5186e63b150d03ee9d9d0c55 407 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 245 254 - T 23-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 RD1_RS15165 a569690dbb3593b56dd574821376f794 387 PANTHER PTHR10909:SF326 1 382 2.8E-229 T 23-04-2016 RD1_RS15165 a569690dbb3593b56dd574821376f794 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 382 1.7E-40 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS15165 a569690dbb3593b56dd574821376f794 387 SUPERFAMILY SSF47203 232 383 1.93E-44 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS15165 a569690dbb3593b56dd574821376f794 387 Gene3D G3DSA:2.40.110.10 126 223 9.6E-40 T 23-04-2016 RD1_RS15165 a569690dbb3593b56dd574821376f794 387 Gene3D G3DSA:1.20.140.10 224 384 8.3E-62 T 23-04-2016 RD1_RS15165 a569690dbb3593b56dd574821376f794 387 PANTHER PTHR10909 1 382 2.8E-229 T 23-04-2016 RD1_RS15165 a569690dbb3593b56dd574821376f794 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 122 6.0E-37 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS15165 a569690dbb3593b56dd574821376f794 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 341 360 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RD1_RS15165 a569690dbb3593b56dd574821376f794 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 1.4E-24 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RD1_RS15165 a569690dbb3593b56dd574821376f794 387 Gene3D G3DSA:1.10.540.10 5 124 2.4E-43 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS15165 a569690dbb3593b56dd574821376f794 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RD1_RS15165 a569690dbb3593b56dd574821376f794 387 SUPERFAMILY SSF56645 6 247 1.06E-84 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RD1_RS16390 e1f15349e6f3edb18f231f223295f38e 156 SUPERFAMILY SSF51735 4 137 2.82E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS16390 e1f15349e6f3edb18f231f223295f38e 156 PANTHER PTHR33303 1 141 8.5E-45 T 23-04-2016 RD1_RS16390 e1f15349e6f3edb18f231f223295f38e 156 SMART SM00881 11 108 1.7E-16 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RD1_RS16390 e1f15349e6f3edb18f231f223295f38e 156 Gene3D G3DSA:3.40.50.720 4 141 1.4E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS16390 e1f15349e6f3edb18f231f223295f38e 156 Pfam PF13380 CoA binding domain 16 134 1.4E-34 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RD1_RS12160 52617fdac977300b055c59b175db75e4 346 Gene3D G3DSA:3.40.190.10 168 290 1.0E-12 T 23-04-2016 RD1_RS12160 52617fdac977300b055c59b175db75e4 346 Gene3D G3DSA:3.40.190.10 26 167 2.1E-26 T 23-04-2016 RD1_RS12160 52617fdac977300b055c59b175db75e4 346 PANTHER PTHR30570:SF1 152 310 6.7E-29 T 23-04-2016 RD1_RS12160 52617fdac977300b055c59b175db75e4 346 PANTHER PTHR30570:SF1 9 134 6.7E-29 T 23-04-2016 RD1_RS12160 52617fdac977300b055c59b175db75e4 346 PANTHER PTHR30570 152 310 6.7E-29 T 23-04-2016 RD1_RS12160 52617fdac977300b055c59b175db75e4 346 PANTHER PTHR30570 9 134 6.7E-29 T 23-04-2016 RD1_RS12160 52617fdac977300b055c59b175db75e4 346 SUPERFAMILY SSF53850 17 328 1.26E-61 T 23-04-2016 RD1_RS12160 52617fdac977300b055c59b175db75e4 346 Pfam PF12849 PBP superfamily domain 18 309 4.5E-51 T 23-04-2016 IPR024370 PBP domain RD1_RS14360 0670a43fe0fdc368b72911fe06b5c69e 280 Gene3D G3DSA:3.40.50.150 5 208 2.7E-64 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS14360 0670a43fe0fdc368b72911fe06b5c69e 280 PANTHER PTHR11727 7 276 1.2E-91 T 23-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RD1_RS14360 0670a43fe0fdc368b72911fe06b5c69e 280 Gene3D G3DSA:1.10.8.100 215 278 5.4E-21 T 23-04-2016 IPR023165 rRNA adenine dimethylase-like RD1_RS14360 0670a43fe0fdc368b72911fe06b5c69e 280 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 19 278 49.609 T 23-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RD1_RS14360 0670a43fe0fdc368b72911fe06b5c69e 280 SMART SM00650 35 210 3.8E-63 T 23-04-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 RD1_RS14360 0670a43fe0fdc368b72911fe06b5c69e 280 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 20 276 5.2E-67 T 23-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RD1_RS14360 0670a43fe0fdc368b72911fe06b5c69e 280 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 51 79 - T 23-04-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 RD1_RS14360 0670a43fe0fdc368b72911fe06b5c69e 280 SUPERFAMILY SSF53335 17 277 2.23E-73 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS14360 0670a43fe0fdc368b72911fe06b5c69e 280 Pfam PF00398 Ribosomal RNA adenine dimethylase 20 275 2.1E-46 T 23-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RD1_RS08680 af8ab5e24b864050da029df7982196ac 105 SUPERFAMILY SSF52833 1 101 2.35E-20 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS08680 af8ab5e24b864050da029df7982196ac 105 Pfam PF03960 ArsC family 4 98 1.0E-10 T 23-04-2016 IPR006660 Arsenate reductase-like RD1_RS08680 af8ab5e24b864050da029df7982196ac 105 Gene3D G3DSA:3.40.30.10 1 100 3.4E-22 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS08680 af8ab5e24b864050da029df7982196ac 105 PANTHER PTHR30041 1 97 3.9E-16 T 23-04-2016 RD1_RS08680 af8ab5e24b864050da029df7982196ac 105 PANTHER PTHR30041:SF3 1 97 3.9E-16 T 23-04-2016 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Pfam PF04560 RNA polymerase Rpb2, domain 7 1298 1372 6.6E-26 T 23-04-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Gene3D G3DSA:2.30.150.10 612 676 4.1E-25 T 23-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Pfam PF04561 RNA polymerase Rpb2, domain 2 368 474 5.3E-19 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Gene3D G3DSA:2.40.270.10 1092 1274 5.7E-84 T 23-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Gene3D G3DSA:2.40.270.10 812 839 5.7E-84 T 23-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Pfam PF04565 RNA polymerase Rpb2, domain 3 533 601 3.4E-31 T 23-04-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 PANTHER PTHR20856:SF20 762 949 0.0 T 23-04-2016 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 PANTHER PTHR20856:SF20 1066 1160 0.0 T 23-04-2016 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 PANTHER PTHR20856:SF20 360 745 0.0 T 23-04-2016 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 PANTHER PTHR20856:SF20 1 237 0.0 T 23-04-2016 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 PANTHER PTHR20856:SF20 1214 1378 0.0 T 23-04-2016 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Pfam PF00562 RNA polymerase Rpb2, domain 6 737 1296 1.0E-164 T 23-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 9 1371 0.0 T 23-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 PANTHER PTHR20856 762 949 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 PANTHER PTHR20856 1066 1160 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 PANTHER PTHR20856 360 745 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 PANTHER PTHR20856 1 237 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 PANTHER PTHR20856 1214 1378 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Gene3D G3DSA:3.90.1110.10 159 236 3.4E-69 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Gene3D G3DSA:3.90.1110.10 366 464 3.4E-69 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Pfam PF10385 RNA polymerase beta subunit external 1 domain 611 676 7.4E-24 T 23-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Gene3D G3DSA:2.40.50.150 846 956 5.3E-57 T 23-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Gene3D G3DSA:2.40.50.150 1077 1091 5.3E-57 T 23-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Pfam PF04563 RNA polymerase beta subunit 27 517 7.1E-35 T 23-04-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Gene3D G3DSA:3.90.1100.10 19 157 5.1E-152 T 23-04-2016 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Gene3D G3DSA:3.90.1100.10 679 733 5.1E-152 T 23-04-2016 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Gene3D G3DSA:3.90.1100.10 465 611 5.1E-152 T 23-04-2016 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Gene3D G3DSA:2.40.50.100 735 811 5.0E-30 T 23-04-2016 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1374 12.395 T 23-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 SUPERFAMILY SSF64484 11 232 0.0 T 23-04-2016 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 SUPERFAMILY SSF64484 1071 1375 0.0 T 23-04-2016 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 SUPERFAMILY SSF64484 363 958 0.0 T 23-04-2016 RD1_RS18390 b1560ac003636e5106bd82d14bbad7c8 1378 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1095 1107 - T 23-04-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RD1_RS05815 8fb9197dbe4a5e45393b2c00dd04edf9 285 SUPERFAMILY SSF53850 8 187 8.03E-51 T 23-04-2016 RD1_RS05815 8fb9197dbe4a5e45393b2c00dd04edf9 285 Pfam PF00800 Prephenate dehydratase 9 184 3.1E-45 T 23-04-2016 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 RD1_RS05815 8fb9197dbe4a5e45393b2c00dd04edf9 285 Gene3D G3DSA:3.40.190.10 4 93 1.3E-25 T 23-04-2016 RD1_RS05815 8fb9197dbe4a5e45393b2c00dd04edf9 285 PIRSF PIRSF001500 1 277 8.1E-61 T 23-04-2016 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 RD1_RS05815 8fb9197dbe4a5e45393b2c00dd04edf9 285 Gene3D G3DSA:3.30.70.260 192 276 6.3E-24 T 23-04-2016 RD1_RS05815 8fb9197dbe4a5e45393b2c00dd04edf9 285 SUPERFAMILY SSF55021 184 276 2.01E-24 T 23-04-2016 RD1_RS05815 8fb9197dbe4a5e45393b2c00dd04edf9 285 PANTHER PTHR21022 6 276 1.9E-79 T 23-04-2016 RD1_RS05815 8fb9197dbe4a5e45393b2c00dd04edf9 285 Gene3D G3DSA:3.40.190.10 94 171 4.5E-19 T 23-04-2016 RD1_RS15570 29dc14df0383729c31fb778865619cdd 190 Pfam PF03352 Methyladenine glycosylase 7 181 2.4E-76 T 23-04-2016 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 RD1_RS15570 29dc14df0383729c31fb778865619cdd 190 SUPERFAMILY SSF48150 3 185 2.09E-76 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RD1_RS15570 29dc14df0383729c31fb778865619cdd 190 Gene3D G3DSA:1.10.340.30 4 182 1.1E-78 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RD1_RS15570 29dc14df0383729c31fb778865619cdd 190 PANTHER PTHR30037:SF4 1 185 7.7E-104 T 23-04-2016 RD1_RS15570 29dc14df0383729c31fb778865619cdd 190 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 4 182 1.9E-72 T 23-04-2016 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 RD1_RS15570 29dc14df0383729c31fb778865619cdd 190 PANTHER PTHR30037 1 185 7.7E-104 T 23-04-2016 RD1_RS00590 ab291976d00218611d210a2126419155 371 PANTHER PTHR31053:SF1 30 325 1.0E-125 T 23-04-2016 RD1_RS00590 ab291976d00218611d210a2126419155 371 Hamap MF_01840 Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase [acsF]. 26 367 41.156 T 23-04-2016 IPR008434 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase GO:0015979|GO:0015995|GO:0046872|GO:0048529 KEGG: 00860+1.14.13.81 RD1_RS00590 ab291976d00218611d210a2126419155 371 PANTHER PTHR31053 30 325 1.0E-125 T 23-04-2016 RD1_RS00590 ab291976d00218611d210a2126419155 371 Pfam PF02915 Rubrerythrin 106 236 2.1E-34 T 23-04-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 RD1_RS00590 ab291976d00218611d210a2126419155 371 SUPERFAMILY SSF47240 60 362 5.3E-31 T 23-04-2016 IPR009078 Ferritin-like superfamily RD1_RS00590 ab291976d00218611d210a2126419155 371 TIGRFAM TIGR02029 AcsF: magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase 31 358 7.1E-158 T 23-04-2016 IPR008434 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase GO:0015979|GO:0015995|GO:0046872|GO:0048529 KEGG: 00860+1.14.13.81 RD1_RS00590 ab291976d00218611d210a2126419155 371 Gene3D G3DSA:1.20.1260.10 113 159 2.4E-4 T 23-04-2016 IPR012347 Ferritin-related RD1_RS10010 0e61be2597d435fb33ca0df30670e4c6 424 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 26 388 4.0E-162 T 23-04-2016 IPR017777 ABC transporter, urea, substrate-binding, UrtA RD1_RS10010 0e61be2597d435fb33ca0df30670e4c6 424 SUPERFAMILY SSF53822 25 380 3.03E-87 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS10010 0e61be2597d435fb33ca0df30670e4c6 424 PANTHER PTHR30483:SF8 8 405 5.8E-180 T 23-04-2016 RD1_RS10010 0e61be2597d435fb33ca0df30670e4c6 424 Pfam PF13433 Periplasmic binding protein domain 26 392 1.2E-162 T 23-04-2016 RD1_RS10010 0e61be2597d435fb33ca0df30670e4c6 424 Gene3D G3DSA:3.40.50.2300 141 332 1.3E-69 T 23-04-2016 RD1_RS10010 0e61be2597d435fb33ca0df30670e4c6 424 PANTHER PTHR30483 8 405 5.8E-180 T 23-04-2016 RD1_RS06680 36b46b5aca960e22b4921c10b0819d05 225 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 132 192 1.1E-8 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS06680 36b46b5aca960e22b4921c10b0819d05 225 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 192 1.4E-28 T 23-04-2016 IPR023214 HAD-like domain RD1_RS06680 36b46b5aca960e22b4921c10b0819d05 225 SUPERFAMILY SSF56784 5 221 7.76E-52 T 23-04-2016 IPR023214 HAD-like domain RD1_RS06680 36b46b5aca960e22b4921c10b0819d05 225 Gene3D G3DSA:1.10.150.240 23 75 1.2E-8 T 23-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RD1_RS06680 36b46b5aca960e22b4921c10b0819d05 225 PANTHER PTHR18901:SF14 1 222 2.5E-42 T 23-04-2016 RD1_RS06680 36b46b5aca960e22b4921c10b0819d05 225 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 105 186 6.6E-9 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS06680 36b46b5aca960e22b4921c10b0819d05 225 Gene3D G3DSA:3.40.50.1000 76 222 3.1E-37 T 23-04-2016 IPR023214 HAD-like domain RD1_RS06680 36b46b5aca960e22b4921c10b0819d05 225 PANTHER PTHR18901 1 222 2.5E-42 T 23-04-2016 RD1_RS00565 10aea25ee08beaef17b63c28245d0a46 290 TIGRFAM TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein 8 285 1.7E-97 T 23-04-2016 IPR017497 Putative magnesium chelatase accessory protein KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00671 RD1_RS00565 10aea25ee08beaef17b63c28245d0a46 290 Pfam PF12697 Alpha/beta hydrolase family 36 279 1.6E-23 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS00565 10aea25ee08beaef17b63c28245d0a46 290 PANTHER PTHR10992 1 150 6.3E-46 T 23-04-2016 RD1_RS00565 10aea25ee08beaef17b63c28245d0a46 290 PANTHER PTHR10992 181 287 6.3E-46 T 23-04-2016 RD1_RS00565 10aea25ee08beaef17b63c28245d0a46 290 Gene3D G3DSA:3.40.50.1820 10 288 1.0E-53 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS00565 10aea25ee08beaef17b63c28245d0a46 290 PRINTS PR00412 Epoxide hydrolase signature 104 117 5.7E-7 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RD1_RS00565 10aea25ee08beaef17b63c28245d0a46 290 PRINTS PR00412 Epoxide hydrolase signature 229 245 5.7E-7 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RD1_RS00565 10aea25ee08beaef17b63c28245d0a46 290 PRINTS PR00412 Epoxide hydrolase signature 262 284 5.7E-7 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RD1_RS00565 10aea25ee08beaef17b63c28245d0a46 290 PRINTS PR00412 Epoxide hydrolase signature 40 58 5.7E-7 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RD1_RS00565 10aea25ee08beaef17b63c28245d0a46 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 1.5E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS00565 10aea25ee08beaef17b63c28245d0a46 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 231 245 1.5E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS00565 10aea25ee08beaef17b63c28245d0a46 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 59 74 1.5E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS00565 10aea25ee08beaef17b63c28245d0a46 290 SUPERFAMILY SSF53474 19 285 1.5E-52 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 PANTHER PTHR19372:SF2 42 425 2.0E-89 T 23-04-2016 RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 SUPERFAMILY SSF81296 300 417 3.71E-29 T 23-04-2016 IPR014756 Immunoglobulin E-set RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 Gene3D G3DSA:3.90.420.10 88 301 3.8E-65 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 SUPERFAMILY SSF56524 60 304 1.44E-69 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 Pfam PF00174 Oxidoreductase molybdopterin binding domain 116 276 3.2E-48 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 Gene3D G3DSA:2.60.40.650 302 417 5.0E-25 T 23-04-2016 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 TIGRFAM TIGR04555 sulfite_DH_soxC: sulfite dehydrogenase 13 425 7.0E-176 T 23-04-2016 IPR030835 Sulfite dehydrogenase SoxC RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 PRINTS PR00407 Eukaryotic molybdopterin domain signature 242 255 7.1E-16 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 PRINTS PR00407 Eukaryotic molybdopterin domain signature 225 241 7.1E-16 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 PRINTS PR00407 Eukaryotic molybdopterin domain signature 98 114 7.1E-16 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 PRINTS PR00407 Eukaryotic molybdopterin domain signature 324 338 7.1E-16 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 PRINTS PR00407 Eukaryotic molybdopterin domain signature 258 271 7.1E-16 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 PRINTS PR00407 Eukaryotic molybdopterin domain signature 381 393 7.1E-16 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 PRINTS PR00407 Eukaryotic molybdopterin domain signature 175 190 7.1E-16 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 Pfam PF03404 Mo-co oxidoreductase dimerisation domain 294 412 3.3E-22 T 23-04-2016 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 RD1_RS07020 ca99bf5bde2edc799261f079f69d9ff2 428 PANTHER PTHR19372 42 425 2.0E-89 T 23-04-2016 RD1_RS14100 aaba7b9e4209d3b879a15fe9d7425b93 56 Gene3D G3DSA:3.30.420.10 1 53 4.4E-5 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS18175 049e8c0a45c47c051d2bb4a78142867f 212 Gene3D G3DSA:3.40.30.10 1 78 5.1E-20 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS18175 049e8c0a45c47c051d2bb4a78142867f 212 SUPERFAMILY SSF47616 74 204 1.16E-28 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS18175 049e8c0a45c47c051d2bb4a78142867f 212 Pfam PF00043 Glutathione S-transferase, C-terminal domain 114 194 1.3E-8 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal RD1_RS18175 049e8c0a45c47c051d2bb4a78142867f 212 Gene3D G3DSA:1.20.1050.10 79 201 5.2E-27 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS18175 049e8c0a45c47c051d2bb4a78142867f 212 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 76 4.4E-12 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RD1_RS18175 049e8c0a45c47c051d2bb4a78142867f 212 PANTHER PTHR11260 1 198 1.8E-34 T 23-04-2016 RD1_RS18175 049e8c0a45c47c051d2bb4a78142867f 212 SUPERFAMILY SSF52833 1 81 3.07E-17 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS18960 bdf1e85d6f3661d7f66d6ae49b4a2fd6 352 SUPERFAMILY SSF55846 185 242 3.36E-29 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RD1_RS18960 bdf1e85d6f3661d7f66d6ae49b4a2fd6 352 SUPERFAMILY SSF55846 59 150 3.36E-29 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RD1_RS18960 bdf1e85d6f3661d7f66d6ae49b4a2fd6 352 SMART SM00644 54 231 0.002 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RD1_RS18960 bdf1e85d6f3661d7f66d6ae49b4a2fd6 352 PANTHER PTHR30417 67 147 2.9E-14 T 23-04-2016 RD1_RS18960 bdf1e85d6f3661d7f66d6ae49b4a2fd6 352 PANTHER PTHR30417 187 235 2.9E-14 T 23-04-2016 RD1_RS18960 bdf1e85d6f3661d7f66d6ae49b4a2fd6 352 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 63 232 3.7E-16 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RD1_RS18960 bdf1e85d6f3661d7f66d6ae49b4a2fd6 352 Gene3D G3DSA:3.40.80.10 59 144 9.3E-31 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RD1_RS18960 bdf1e85d6f3661d7f66d6ae49b4a2fd6 352 Gene3D G3DSA:3.40.80.10 188 243 9.3E-31 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RD1_RS13950 8cfeb42b194ae1da6d00894e03434981 419 SMART SM00825 Beta-ketoacyl synthase 4 415 5.0E-14 T 23-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RD1_RS13950 8cfeb42b194ae1da6d00894e03434981 419 PIRSF PIRSF000447 1 419 2.2E-185 T 23-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 RD1_RS13950 8cfeb42b194ae1da6d00894e03434981 419 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 161 177 - T 23-04-2016 IPR018201 Beta-ketoacyl synthase, active site RD1_RS13950 8cfeb42b194ae1da6d00894e03434981 419 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 254 2.1E-61 T 23-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RD1_RS13950 8cfeb42b194ae1da6d00894e03434981 419 Gene3D G3DSA:3.40.47.10 6 267 3.9E-80 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS13950 8cfeb42b194ae1da6d00894e03434981 419 PANTHER PTHR11712 1 415 6.1E-206 T 23-04-2016 RD1_RS13950 8cfeb42b194ae1da6d00894e03434981 419 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 2 415 5.3E-192 T 23-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 RD1_RS13950 8cfeb42b194ae1da6d00894e03434981 419 SUPERFAMILY SSF53901 1 261 3.66E-77 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS13950 8cfeb42b194ae1da6d00894e03434981 419 SUPERFAMILY SSF53901 221 417 7.25E-68 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS13950 8cfeb42b194ae1da6d00894e03434981 419 Gene3D G3DSA:3.40.47.10 271 417 9.0E-57 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS13950 8cfeb42b194ae1da6d00894e03434981 419 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 262 375 1.0E-34 T 23-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 Pfam PF03129 Anticodon binding domain 405 510 3.0E-9 T 23-04-2016 IPR004154 Anticodon-binding RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 10 510 25.231 T 23-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 13 480 3.9E-110 T 23-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 Gene3D G3DSA:3.40.50.800 404 511 2.0E-26 T 23-04-2016 IPR004154 Anticodon-binding RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 PIRSF PIRSF001549 9 496 1.8E-111 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 PANTHER PTHR11476:SF1 11 188 3.4E-153 T 23-04-2016 RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 PANTHER PTHR11476:SF1 492 516 3.4E-153 T 23-04-2016 RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 PANTHER PTHR11476:SF1 208 475 3.4E-153 T 23-04-2016 RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 PANTHER PTHR11476 11 188 3.4E-153 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 PANTHER PTHR11476 492 516 3.4E-153 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 PANTHER PTHR11476 208 475 3.4E-153 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 Gene3D G3DSA:3.30.930.10 12 231 1.2E-79 T 23-04-2016 RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 Gene3D G3DSA:3.30.930.10 296 396 1.2E-79 T 23-04-2016 RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 Pfam PF13393 Histidyl-tRNA synthetase 17 387 1.5E-35 T 23-04-2016 RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 SUPERFAMILY SSF52954 405 512 6.71E-17 T 23-04-2016 IPR004154 Anticodon-binding RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 SUPERFAMILY SSF55681 12 206 8.56E-67 T 23-04-2016 RD1_RS18595 bf9e45a30e14b5513b28296778fdace8 519 SUPERFAMILY SSF55681 263 394 8.56E-67 T 23-04-2016 RD1_RS09690 2f9ef3033ecf6296ccd08a49803bcc45 231 PANTHER PTHR30625 8 228 2.4E-54 T 23-04-2016 RD1_RS09690 2f9ef3033ecf6296ccd08a49803bcc45 231 TIGRFAM TIGR02796 tolQ: protein TolQ 15 227 3.5E-79 T 23-04-2016 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 RD1_RS09690 2f9ef3033ecf6296ccd08a49803bcc45 231 PANTHER PTHR30625:SF3 8 228 2.4E-54 T 23-04-2016 RD1_RS09690 2f9ef3033ecf6296ccd08a49803bcc45 231 Pfam PF01618 MotA/TolQ/ExbB proton channel family 87 214 6.0E-39 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RD1_RS02975 b28476e874ce89ab508671a444b1954b 303 PANTHER PTHR13767:SF2 4 299 3.8E-110 T 23-04-2016 RD1_RS02975 b28476e874ce89ab508671a444b1954b 303 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 239 4.9E-16 T 23-04-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal RD1_RS02975 b28476e874ce89ab508671a444b1954b 303 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 32 180 5.0E-48 T 23-04-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 RD1_RS02975 b28476e874ce89ab508671a444b1954b 303 PANTHER PTHR13767 4 299 3.8E-110 T 23-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS02975 b28476e874ce89ab508671a444b1954b 303 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 10 299 18.238 T 23-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS02975 b28476e874ce89ab508671a444b1954b 303 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 11 217 1.2E-68 T 23-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS02975 b28476e874ce89ab508671a444b1954b 303 SUPERFAMILY SSF55120 10 239 1.5E-76 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RD1_RS04655 98b637414e35548a53908dfc457e1c3a 121 Pfam PF00453 Ribosomal protein L20 3 110 1.1E-45 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RD1_RS04655 98b637414e35548a53908dfc457e1c3a 121 Gene3D G3DSA:1.10.1900.20 55 119 1.1E-28 T 23-04-2016 RD1_RS04655 98b637414e35548a53908dfc457e1c3a 121 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 115 3.6E-47 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RD1_RS04655 98b637414e35548a53908dfc457e1c3a 121 PANTHER PTHR10986 2 119 7.1E-56 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RD1_RS04655 98b637414e35548a53908dfc457e1c3a 121 SUPERFAMILY SSF74731 3 119 1.7E-45 T 23-04-2016 RD1_RS04655 98b637414e35548a53908dfc457e1c3a 121 PRINTS PR00062 Ribosomal protein L20 signature 12 41 7.5E-37 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RD1_RS04655 98b637414e35548a53908dfc457e1c3a 121 PRINTS PR00062 Ribosomal protein L20 signature 77 103 7.5E-37 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RD1_RS04655 98b637414e35548a53908dfc457e1c3a 121 PRINTS PR00062 Ribosomal protein L20 signature 42 71 7.5E-37 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RD1_RS04655 98b637414e35548a53908dfc457e1c3a 121 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 117 28.008 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RD1_RS04655 98b637414e35548a53908dfc457e1c3a 121 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 8.0E-23 T 23-04-2016 RD1_RS04655 98b637414e35548a53908dfc457e1c3a 121 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RD1_RS04655 98b637414e35548a53908dfc457e1c3a 121 PANTHER PTHR10986:SF12 2 119 7.1E-56 T 23-04-2016 RD1_RS12475 a315be9d3ce0d3e89c6793a1329bdfd5 328 PRINTS PR00116 Arginase signature 128 143 1.1E-12 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS12475 a315be9d3ce0d3e89c6793a1329bdfd5 328 PRINTS PR00116 Arginase signature 275 289 1.1E-12 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS12475 a315be9d3ce0d3e89c6793a1329bdfd5 328 PRINTS PR00116 Arginase signature 240 269 1.1E-12 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS12475 a315be9d3ce0d3e89c6793a1329bdfd5 328 ProSitePatterns PS01053 Arginase family signature. 243 264 - T 23-04-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Reactome: REACT_13 RD1_RS12475 a315be9d3ce0d3e89c6793a1329bdfd5 328 PANTHER PTHR11358:SF26 33 328 1.7E-69 T 23-04-2016 RD1_RS12475 a315be9d3ce0d3e89c6793a1329bdfd5 328 PANTHER PTHR11358 33 328 1.7E-69 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS12475 a315be9d3ce0d3e89c6793a1329bdfd5 328 Gene3D G3DSA:3.40.800.10 9 318 7.3E-90 T 23-04-2016 IPR023696 Ureohydrolase domain RD1_RS12475 a315be9d3ce0d3e89c6793a1329bdfd5 328 PIRSF PIRSF036979 15 319 1.6E-69 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS12475 a315be9d3ce0d3e89c6793a1329bdfd5 328 SUPERFAMILY SSF52768 4 320 4.32E-79 T 23-04-2016 RD1_RS12475 a315be9d3ce0d3e89c6793a1329bdfd5 328 Pfam PF00491 Arginase family 35 311 8.9E-74 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS06670 181b0923cb2425a10d22260fa1c97b85 127 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 123 18.938 T 23-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RD1_RS06670 181b0923cb2425a10d22260fa1c97b85 127 PANTHER PTHR28259 1 123 5.8E-28 T 23-04-2016 RD1_RS06670 181b0923cb2425a10d22260fa1c97b85 127 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 118 1.8E-21 T 23-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RD1_RS07345 53bfe614592670c1036095f11c101583 192 ProSitePatterns PS00194 Thioredoxin family active site. 76 94 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RD1_RS07345 53bfe614592670c1036095f11c101583 192 PANTHER PTHR10438 54 113 1.4E-20 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RD1_RS07345 53bfe614592670c1036095f11c101583 192 PANTHER PTHR10438 138 187 1.4E-20 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RD1_RS07345 53bfe614592670c1036095f11c101583 192 Pfam PF00578 AhpC/TSA family 60 163 5.1E-18 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 RD1_RS07345 53bfe614592670c1036095f11c101583 192 PANTHER PTHR10438:SF244 54 113 1.4E-20 T 23-04-2016 RD1_RS07345 53bfe614592670c1036095f11c101583 192 PANTHER PTHR10438:SF244 138 187 1.4E-20 T 23-04-2016 RD1_RS07345 53bfe614592670c1036095f11c101583 192 SUPERFAMILY SSF52833 48 186 2.16E-36 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS07345 53bfe614592670c1036095f11c101583 192 Gene3D G3DSA:3.40.30.10 12 189 1.2E-40 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS18685 8a4a9e35261fb2b52f9733956865a964 147 SUPERFAMILY SSF54690 3 147 1.07E-47 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS18685 8a4a9e35261fb2b52f9733956865a964 147 Pfam PF02391 MoaE protein 5 118 4.9E-33 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS18685 8a4a9e35261fb2b52f9733956865a964 147 PANTHER PTHR23404 25 147 1.9E-30 T 23-04-2016 RD1_RS18685 8a4a9e35261fb2b52f9733956865a964 147 Gene3D G3DSA:3.90.1170.40 2 147 1.4E-50 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS18685 8a4a9e35261fb2b52f9733956865a964 147 PANTHER PTHR23404:SF2 25 147 1.9E-30 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 RD1_RS04970 30ffb135f9d35376ad9bd57699bf0fff 196 SUPERFAMILY SSF52980 14 188 1.42E-33 T 23-04-2016 IPR011335 Restriction endonuclease type II-like RD1_RS04970 30ffb135f9d35376ad9bd57699bf0fff 196 Pfam PF09195 Restriction endonuclease BglII 21 188 4.8E-54 T 23-04-2016 IPR015278 Type-2 restriction enzyme BglII GO:0009036|GO:0009307 RD1_RS04970 30ffb135f9d35376ad9bd57699bf0fff 196 Gene3D G3DSA:3.40.91.20 11 189 6.2E-49 T 23-04-2016 IPR011338 Restriction endonuclease, type II, BamHI/BglIII/BstY GO:0000287|GO:0003677|GO:0009036|GO:0009307 RD1_RS10065 3f602cbba7d1a19ad15478c17586d8a8 481 SUPERFAMILY SSF52540 1 237 2.88E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10065 3f602cbba7d1a19ad15478c17586d8a8 481 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 252 435 1.5E-53 T 23-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 RD1_RS10065 3f602cbba7d1a19ad15478c17586d8a8 481 SUPERFAMILY SSF52317 253 444 2.89E-39 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS10065 3f602cbba7d1a19ad15478c17586d8a8 481 PANTHER PTHR21343 1 480 4.6E-190 T 23-04-2016 RD1_RS10065 3f602cbba7d1a19ad15478c17586d8a8 481 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 481 187.97 T 23-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 RD1_RS10065 3f602cbba7d1a19ad15478c17586d8a8 481 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 5 474 1.4E-125 T 23-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 RD1_RS10065 3f602cbba7d1a19ad15478c17586d8a8 481 PANTHER PTHR21343:SF1 1 480 4.6E-190 T 23-04-2016 RD1_RS10065 3f602cbba7d1a19ad15478c17586d8a8 481 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 225 1.1E-26 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RD1_RS10065 3f602cbba7d1a19ad15478c17586d8a8 481 Gene3D G3DSA:3.40.50.300 3 231 2.1E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10065 3f602cbba7d1a19ad15478c17586d8a8 481 Gene3D G3DSA:3.40.50.880 255 442 6.2E-29 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS18485 911432ba4beb0027239776d932bc2fb5 536 Pfam PF09299 Mu transposase, C-terminal 325 376 3.8E-5 T 23-04-2016 IPR015378 Transposase-like, Mu, C-terminal RD1_RS18485 911432ba4beb0027239776d932bc2fb5 536 Gene3D G3DSA:3.30.420.10 130 299 3.6E-18 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS18485 911432ba4beb0027239776d932bc2fb5 536 SUPERFAMILY SSF53098 128 312 1.63E-12 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS01570 0b762363a3c02e269eb5c3b6cd1327b4 991 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 310 732 4.0E-141 T 23-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01570 0b762363a3c02e269eb5c3b6cd1327b4 991 Gene3D G3DSA:3.20.20.140 9 58 1.4E-6 T 23-04-2016 RD1_RS01570 0b762363a3c02e269eb5c3b6cd1327b4 991 Pfam PF02811 PHP domain 4 126 2.6E-7 T 23-04-2016 IPR004013 PHP domain GO:0003824 RD1_RS01570 0b762363a3c02e269eb5c3b6cd1327b4 991 SMART SM00481 3 92 7.3E-10 T 23-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 RD1_RS01570 0b762363a3c02e269eb5c3b6cd1327b4 991 Pfam PF14579 Helix-hairpin-helix motif 806 895 9.3E-19 T 23-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01570 0b762363a3c02e269eb5c3b6cd1327b4 991 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 2 990 12.194 T 23-04-2016 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01570 0b762363a3c02e269eb5c3b6cd1327b4 991 PANTHER PTHR32294 1 51 0.0 T 23-04-2016 RD1_RS01570 0b762363a3c02e269eb5c3b6cd1327b4 991 PANTHER PTHR32294 67 959 0.0 T 23-04-2016 RD1_RS01570 0b762363a3c02e269eb5c3b6cd1327b4 991 SUPERFAMILY SSF89550 9 51 1.53E-5 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 RD1_RS01570 0b762363a3c02e269eb5c3b6cd1327b4 991 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 202 899 3.8E-133 T 23-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RD1_RS01570 0b762363a3c02e269eb5c3b6cd1327b4 991 PANTHER PTHR32294:SF4 1 51 0.0 T 23-04-2016 RD1_RS01570 0b762363a3c02e269eb5c3b6cd1327b4 991 PANTHER PTHR32294:SF4 67 959 0.0 T 23-04-2016 RD1_RS09350 43e477e112d4b82e7509f80ae0fc2eb5 191 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 191 78.768 T 23-04-2016 IPR017757 Transcriptional repressor BetI UniPathway: UPA00529 RD1_RS09350 43e477e112d4b82e7509f80ae0fc2eb5 191 SUPERFAMILY SSF48498 80 189 6.12E-20 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RD1_RS09350 43e477e112d4b82e7509f80ae0fc2eb5 191 Gene3D G3DSA:1.10.357.10 1 188 6.2E-41 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RD1_RS09350 43e477e112d4b82e7509f80ae0fc2eb5 191 PANTHER PTHR30055:SF61 1 167 1.5E-27 T 23-04-2016 RD1_RS09350 43e477e112d4b82e7509f80ae0fc2eb5 191 PANTHER PTHR30055 1 167 1.5E-27 T 23-04-2016 RD1_RS09350 43e477e112d4b82e7509f80ae0fc2eb5 191 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 2 184 2.6E-64 T 23-04-2016 IPR017757 Transcriptional repressor BetI UniPathway: UPA00529 RD1_RS09350 43e477e112d4b82e7509f80ae0fc2eb5 191 Pfam PF13977 Bacterial transcriptional repressor 82 187 3.6E-21 T 23-04-2016 RD1_RS09350 43e477e112d4b82e7509f80ae0fc2eb5 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 60 3.2E-10 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS09350 43e477e112d4b82e7509f80ae0fc2eb5 191 SUPERFAMILY SSF46689 6 84 2.1E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS11385 6a76827b97b67acec13d028e8908f68f 513 SUPERFAMILY SSF56024 141 259 2.67E-22 T 23-04-2016 RD1_RS11385 6a76827b97b67acec13d028e8908f68f 513 SUPERFAMILY SSF56024 5 87 2.67E-22 T 23-04-2016 RD1_RS11385 6a76827b97b67acec13d028e8908f68f 513 SUPERFAMILY SSF56024 280 454 7.54E-23 T 23-04-2016 RD1_RS11385 6a76827b97b67acec13d028e8908f68f 513 Gene3D G3DSA:3.30.870.10 135 256 1.1E-20 T 23-04-2016 RD1_RS11385 6a76827b97b67acec13d028e8908f68f 513 Gene3D G3DSA:3.30.870.10 5 75 1.1E-20 T 23-04-2016 RD1_RS11385 6a76827b97b67acec13d028e8908f68f 513 Gene3D G3DSA:3.30.870.10 277 454 1.4E-13 T 23-04-2016 RD1_RS11385 6a76827b97b67acec13d028e8908f68f 513 Pfam PF00614 Phospholipase D Active site motif 186 210 2.5E-7 T 23-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RD1_RS11385 6a76827b97b67acec13d028e8908f68f 513 Pfam PF13091 PLD-like domain 293 448 2.7E-8 T 23-04-2016 IPR025202 Phospholipase D-like domain RD1_RS11385 6a76827b97b67acec13d028e8908f68f 513 SMART SM00155 183 210 1.6E-4 T 23-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RD1_RS11385 6a76827b97b67acec13d028e8908f68f 513 SMART SM00155 396 423 0.0052 T 23-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 SUPERFAMILY SSF55681 113 298 2.19E-94 T 23-04-2016 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 SUPERFAMILY SSF55681 429 589 2.19E-94 T 23-04-2016 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 194 206 5.0E-21 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 522 536 5.0E-21 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 478 494 5.0E-21 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 211 224 5.0E-21 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 Gene3D G3DSA:2.40.50.140 3 108 4.8E-38 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 4 587 6.6E-181 T 23-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 SUPERFAMILY SSF50249 3 107 1.16E-31 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 Gene3D G3DSA:3.30.930.10 136 282 1.6E-97 T 23-04-2016 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 Gene3D G3DSA:3.30.930.10 419 587 1.6E-97 T 23-04-2016 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 PANTHER PTHR22594 374 575 4.9E-197 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 PANTHER PTHR22594 2 303 4.9E-197 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 Pfam PF00152 tRNA synthetases class II (D, K and N) 122 561 3.0E-92 T 23-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 4 567 32.655 T 23-04-2016 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 Pfam PF02938 GAD domain 314 405 1.1E-6 T 23-04-2016 IPR029351 GAD domain RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 PANTHER PTHR22594:SF5 374 575 4.9E-197 T 23-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 PANTHER PTHR22594:SF5 2 303 4.9E-197 T 23-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 Gene3D G3DSA:3.30.1360.30 283 418 4.4E-51 T 23-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 Pfam PF01336 OB-fold nucleic acid binding domain 21 104 2.4E-16 T 23-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RD1_RS05420 f480990a7f6b4e96fb806da07b343fe7 591 SUPERFAMILY SSF55261 295 423 6.98E-31 T 23-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 RD1_RS11145 5bc25b756c7d883ba5dc23686524112e 503 SUPERFAMILY SSF51556 64 393 1.15E-64 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS11145 5bc25b756c7d883ba5dc23686524112e 503 Gene3D G3DSA:2.30.40.10 21 66 4.2E-9 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS11145 5bc25b756c7d883ba5dc23686524112e 503 Gene3D G3DSA:2.30.40.10 402 448 4.2E-9 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS11145 5bc25b756c7d883ba5dc23686524112e 503 SUPERFAMILY SSF51338 20 64 1.28E-18 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS11145 5bc25b756c7d883ba5dc23686524112e 503 SUPERFAMILY SSF51338 393 464 1.28E-18 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS11145 5bc25b756c7d883ba5dc23686524112e 503 PANTHER PTHR11271 22 469 6.1E-78 T 23-04-2016 RD1_RS11145 5bc25b756c7d883ba5dc23686524112e 503 PANTHER PTHR11271:SF7 22 469 6.1E-78 T 23-04-2016 RD1_RS11145 5bc25b756c7d883ba5dc23686524112e 503 Gene3D G3DSA:3.20.20.140 67 401 3.3E-72 T 23-04-2016 RD1_RS11145 5bc25b756c7d883ba5dc23686524112e 503 Pfam PF01979 Amidohydrolase family 62 445 1.4E-45 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RD1_RS18850 a4c5c7cf27118d784fd717a3e85426bb 265 PANTHER PTHR32243 4 265 2.1E-77 T 23-04-2016 RD1_RS18850 a4c5c7cf27118d784fd717a3e85426bb 265 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 259 2.1E-12 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18850 a4c5c7cf27118d784fd717a3e85426bb 265 SUPERFAMILY SSF161098 7 264 5.23E-57 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18850 a4c5c7cf27118d784fd717a3e85426bb 265 PANTHER PTHR32243:SF18 4 265 2.1E-77 T 23-04-2016 RD1_RS18850 a4c5c7cf27118d784fd717a3e85426bb 265 Gene3D G3DSA:1.10.3720.10 9 252 9.8E-49 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10790 8d683d6dab926cbf4c3a8c8996fbc0c8 510 Gene3D G3DSA:1.10.3720.10 306 498 2.8E-8 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10790 8d683d6dab926cbf4c3a8c8996fbc0c8 510 PANTHER PTHR30151 309 496 1.4E-25 T 23-04-2016 RD1_RS10790 8d683d6dab926cbf4c3a8c8996fbc0c8 510 PANTHER PTHR30151 3 46 1.4E-25 T 23-04-2016 RD1_RS10790 8d683d6dab926cbf4c3a8c8996fbc0c8 510 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 65 238 8.2E-14 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10790 8d683d6dab926cbf4c3a8c8996fbc0c8 510 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 327 495 1.6E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10790 8d683d6dab926cbf4c3a8c8996fbc0c8 510 SUPERFAMILY SSF161098 45 227 3.27E-9 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10790 8d683d6dab926cbf4c3a8c8996fbc0c8 510 SUPERFAMILY SSF161098 308 488 2.09E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11925 58ecf29e3bf69c239ad92c69a40c1921 390 SUPERFAMILY SSF51735 2 147 6.04E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11925 58ecf29e3bf69c239ad92c69a40c1921 390 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 143 226 4.7E-34 T 23-04-2016 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS11925 58ecf29e3bf69c239ad92c69a40c1921 390 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 384 40.53 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS11925 58ecf29e3bf69c239ad92c69a40c1921 390 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 129 4.5E-34 T 23-04-2016 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS11925 58ecf29e3bf69c239ad92c69a40c1921 390 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2 384 3.1E-113 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS11925 58ecf29e3bf69c239ad92c69a40c1921 390 Pfam PF13288 DXP reductoisomerase C-terminal domain 259 379 3.1E-30 T 23-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS11925 58ecf29e3bf69c239ad92c69a40c1921 390 SUPERFAMILY SSF55347 124 259 2.39E-52 T 23-04-2016 RD1_RS11925 58ecf29e3bf69c239ad92c69a40c1921 390 PANTHER PTHR30525 1 388 1.3E-160 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS11925 58ecf29e3bf69c239ad92c69a40c1921 390 SUPERFAMILY SSF69055 289 387 6.54E-25 T 23-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS11925 58ecf29e3bf69c239ad92c69a40c1921 390 PANTHER PTHR30525:SF0 1 388 1.3E-160 T 23-04-2016 RD1_RS11925 58ecf29e3bf69c239ad92c69a40c1921 390 Gene3D G3DSA:3.40.50.720 1 147 3.0E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS11925 58ecf29e3bf69c239ad92c69a40c1921 390 Gene3D G3DSA:1.10.1740.10 300 386 3.2E-23 T 23-04-2016 RD1_RS11925 58ecf29e3bf69c239ad92c69a40c1921 390 PIRSF PIRSF006205 1 390 5.0E-128 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RD1_RS00935 b079ae7dc069cb9f35c163d9b30e9412 250 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 36 51 - T 23-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RD1_RS00935 b079ae7dc069cb9f35c163d9b30e9412 250 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 16 249 38.413 T 23-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RD1_RS00935 b079ae7dc069cb9f35c163d9b30e9412 250 Gene3D G3DSA:3.40.50.150 25 248 4.0E-59 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS00935 b079ae7dc069cb9f35c163d9b30e9412 250 PANTHER PTHR10108:SF24 1 250 1.0E-123 T 23-04-2016 RD1_RS00935 b079ae7dc069cb9f35c163d9b30e9412 250 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 25 249 3.6E-85 T 23-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RD1_RS00935 b079ae7dc069cb9f35c163d9b30e9412 250 PANTHER PTHR10108 1 250 1.0E-123 T 23-04-2016 RD1_RS00935 b079ae7dc069cb9f35c163d9b30e9412 250 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 157 171 - T 23-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RD1_RS00935 b079ae7dc069cb9f35c163d9b30e9412 250 Pfam PF01209 ubiE/COQ5 methyltransferase family 21 249 9.3E-93 T 23-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RD1_RS00935 b079ae7dc069cb9f35c163d9b30e9412 250 SUPERFAMILY SSF53335 18 245 3.1E-47 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS07950 35c92cbde6123e888ab652395e53ff34 375 Gene3D G3DSA:2.30.40.10 4 55 4.3E-4 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS07950 35c92cbde6123e888ab652395e53ff34 375 Pfam PF01979 Amidohydrolase family 51 355 1.2E-11 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RD1_RS07950 35c92cbde6123e888ab652395e53ff34 375 PIRSF PIRSF038994 8 373 1.3E-90 T 23-04-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395 RD1_RS07950 35c92cbde6123e888ab652395e53ff34 375 SUPERFAMILY SSF51338 4 54 4.14E-9 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS07950 35c92cbde6123e888ab652395e53ff34 375 SUPERFAMILY SSF51556 55 349 1.84E-86 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS07950 35c92cbde6123e888ab652395e53ff34 375 Gene3D G3DSA:3.20.20.140 56 346 1.3E-86 T 23-04-2016 RD1_RS07950 35c92cbde6123e888ab652395e53ff34 375 PANTHER PTHR11113:SF7 3 342 2.8E-91 T 23-04-2016 RD1_RS07950 35c92cbde6123e888ab652395e53ff34 375 PANTHER PTHR11113 3 342 2.8E-91 T 23-04-2016 RD1_RS07950 35c92cbde6123e888ab652395e53ff34 375 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 8 346 3.0E-74 T 23-04-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395 RD1_RS01035 d64212058fbf9891257fd10f360a0dab 298 Gene3D G3DSA:3.20.20.150 1 295 2.2E-74 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS01035 d64212058fbf9891257fd10f360a0dab 298 PANTHER PTHR12110 5 296 3.6E-29 T 23-04-2016 RD1_RS01035 d64212058fbf9891257fd10f360a0dab 298 SUPERFAMILY SSF51658 3 294 5.11E-60 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS01035 d64212058fbf9891257fd10f360a0dab 298 Pfam PF01261 Xylose isomerase-like TIM barrel 32 248 9.1E-31 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS08915 9dd86888b52f4da91cba29457999c379 248 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 92 153 8.9E-7 T 23-04-2016 RD1_RS08915 9dd86888b52f4da91cba29457999c379 248 SUPERFAMILY SSF69318 69 228 1.83E-9 T 23-04-2016 RD1_RS01840 2f891b2dc3559001b71152ecaa0f42fd 276 Pfam PF00795 Carbon-nitrogen hydrolase 2 261 8.6E-51 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS01840 2f891b2dc3559001b71152ecaa0f42fd 276 Gene3D G3DSA:3.60.110.10 1 271 2.3E-74 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS01840 2f891b2dc3559001b71152ecaa0f42fd 276 PANTHER PTHR23088 1 271 4.0E-91 T 23-04-2016 RD1_RS01840 2f891b2dc3559001b71152ecaa0f42fd 276 PANTHER PTHR23088:SF27 1 271 4.0E-91 T 23-04-2016 RD1_RS01840 2f891b2dc3559001b71152ecaa0f42fd 276 SUPERFAMILY SSF56317 1 267 1.96E-75 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS16780 c28f3668ccc10411af26c3b25cf87828 262 SUPERFAMILY SSF46785 7 74 3.63E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS16780 c28f3668ccc10411af26c3b25cf87828 262 PANTHER PTHR30136 2 254 1.1E-24 T 23-04-2016 RD1_RS16780 c28f3668ccc10411af26c3b25cf87828 262 Gene3D G3DSA:3.30.450.40 80 256 1.0E-16 T 23-04-2016 IPR029016 GAF domain-like RD1_RS16780 c28f3668ccc10411af26c3b25cf87828 262 SMART SM00346 5 94 4.0E-4 T 23-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RD1_RS16780 c28f3668ccc10411af26c3b25cf87828 262 Pfam PF09339 IclR helix-turn-helix domain 7 56 4.4E-8 T 23-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RD1_RS16780 c28f3668ccc10411af26c3b25cf87828 262 PANTHER PTHR30136:SF3 2 254 1.1E-24 T 23-04-2016 RD1_RS16780 c28f3668ccc10411af26c3b25cf87828 262 Pfam PF01614 Bacterial transcriptional regulator 130 253 1.6E-5 T 23-04-2016 IPR014757 Transcription regulator IclR, C-terminal RD1_RS16780 c28f3668ccc10411af26c3b25cf87828 262 Gene3D G3DSA:1.10.10.10 5 66 8.3E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS16780 c28f3668ccc10411af26c3b25cf87828 262 SUPERFAMILY SSF55781 82 255 6.54E-15 T 23-04-2016 IPR029016 GAF domain-like RD1_RS16200 be9ec2bddabbc142fdad42fc690489d9 306 PANTHER PTHR12112 3 304 1.6E-66 T 23-04-2016 RD1_RS16200 be9ec2bddabbc142fdad42fc690489d9 306 SUPERFAMILY SSF64182 2 304 1.57E-63 T 23-04-2016 RD1_RS16200 be9ec2bddabbc142fdad42fc690489d9 306 PANTHER PTHR12112:SF17 3 304 1.6E-66 T 23-04-2016 RD1_RS16200 be9ec2bddabbc142fdad42fc690489d9 306 SMART SM01131 181 306 7.5E-38 T 23-04-2016 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1 RD1_RS16200 be9ec2bddabbc142fdad42fc690489d9 306 Pfam PF01368 DHH family 3 146 1.1E-16 T 23-04-2016 IPR001667 DDH domain RD1_RS16200 be9ec2bddabbc142fdad42fc690489d9 306 Gene3D G3DSA:3.90.1640.10 3 187 2.2E-48 T 23-04-2016 RD1_RS16200 be9ec2bddabbc142fdad42fc690489d9 306 Pfam PF02833 DHHA2 domain 183 305 1.3E-16 T 23-04-2016 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1 RD1_RS16415 32165b66f5db2ba5989eb95976f8cd0b 269 PANTHER PTHR32243:SF7 1 269 2.6E-91 T 23-04-2016 RD1_RS16415 32165b66f5db2ba5989eb95976f8cd0b 269 Gene3D G3DSA:1.10.3720.10 9 257 9.8E-50 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS16415 32165b66f5db2ba5989eb95976f8cd0b 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 261 4.4E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS16415 32165b66f5db2ba5989eb95976f8cd0b 269 SUPERFAMILY SSF161098 9 269 5.05E-55 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS16415 32165b66f5db2ba5989eb95976f8cd0b 269 PANTHER PTHR32243 1 269 2.6E-91 T 23-04-2016 RD1_RS05295 dfd0ad0999a6e0b3274e7ecc8cb822f9 249 SUPERFAMILY SSF48613 3 243 4.17E-65 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RD1_RS05295 dfd0ad0999a6e0b3274e7ecc8cb822f9 249 Gene3D G3DSA:1.20.910.10 4 239 1.2E-98 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RD1_RS05295 dfd0ad0999a6e0b3274e7ecc8cb822f9 249 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 4 239 1.5E-115 T 23-04-2016 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420|UniPathway: UPA00539 RD1_RS05295 dfd0ad0999a6e0b3274e7ecc8cb822f9 249 Pfam PF03070 TENA/THI-4/PQQC family 10 220 1.5E-51 T 23-04-2016 IPR004305 Thiaminase-2/PQQC RD1_RS05295 dfd0ad0999a6e0b3274e7ecc8cb822f9 249 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 249 126.917 T 23-04-2016 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420|UniPathway: UPA00539 RD1_RS05295 dfd0ad0999a6e0b3274e7ecc8cb822f9 249 PANTHER PTHR40279 4 248 4.2E-114 T 23-04-2016 RD1_RS05295 dfd0ad0999a6e0b3274e7ecc8cb822f9 249 PANTHER PTHR40279:SF2 4 248 4.2E-114 T 23-04-2016 RD1_RS03845 8fe4bd71554f3f909f9ce928dfc82774 487 Pfam PF00155 Aminotransferase class I and II 188 480 1.4E-22 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS03845 8fe4bd71554f3f909f9ce928dfc82774 487 SUPERFAMILY SSF46785 13 94 1.36E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03845 8fe4bd71554f3f909f9ce928dfc82774 487 SMART SM00345 25 84 3.5E-8 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS03845 8fe4bd71554f3f909f9ce928dfc82774 487 Gene3D G3DSA:3.40.640.10 181 369 4.7E-49 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS03845 8fe4bd71554f3f909f9ce928dfc82774 487 SUPERFAMILY SSF53383 129 485 1.43E-81 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS03845 8fe4bd71554f3f909f9ce928dfc82774 487 Gene3D G3DSA:1.10.10.10 13 85 1.2E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03845 8fe4bd71554f3f909f9ce928dfc82774 487 Gene3D G3DSA:3.90.1150.10 370 485 4.6E-6 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS03845 8fe4bd71554f3f909f9ce928dfc82774 487 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 84 1.6E-12 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS03845 8fe4bd71554f3f909f9ce928dfc82774 487 PANTHER PTHR11751:SF10 110 487 5.7E-79 T 23-04-2016 RD1_RS03845 8fe4bd71554f3f909f9ce928dfc82774 487 PANTHER PTHR11751 110 487 5.7E-79 T 23-04-2016 RD1_RS03845 8fe4bd71554f3f909f9ce928dfc82774 487 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 2.2E-5 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS03845 8fe4bd71554f3f909f9ce928dfc82774 487 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 2.2E-5 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS12940 bb2d9b43dbd449b4d717a940f1f16797 265 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 26 77 2.5E-7 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS12940 bb2d9b43dbd449b4d717a940f1f16797 265 SUPERFAMILY SSF47413 9 77 4.22E-9 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS12940 bb2d9b43dbd449b4d717a940f1f16797 265 SMART SM00530 18 72 4.7E-5 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS12940 bb2d9b43dbd449b4d717a940f1f16797 265 Gene3D G3DSA:1.10.260.40 13 74 6.6E-10 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS09315 f185dda42623334e0e4b9a34a997aaa1 592 Pfam PF02080 TrkA-C domain 313 379 2.3E-9 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS09315 f185dda42623334e0e4b9a34a997aaa1 592 PANTHER PTHR10283:SF100 14 216 5.0E-105 T 23-04-2016 RD1_RS09315 f185dda42623334e0e4b9a34a997aaa1 592 PANTHER PTHR10283:SF100 294 310 5.0E-105 T 23-04-2016 RD1_RS09315 f185dda42623334e0e4b9a34a997aaa1 592 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 540 556 - T 23-04-2016 IPR031312 Sodium/sulphate symporter, conserved site RD1_RS09315 f185dda42623334e0e4b9a34a997aaa1 592 PANTHER PTHR10283 294 310 5.0E-105 T 23-04-2016 RD1_RS09315 f185dda42623334e0e4b9a34a997aaa1 592 SUPERFAMILY SSF116726 309 384 6.02E-16 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS09315 f185dda42623334e0e4b9a34a997aaa1 592 Pfam PF03600 Citrate transporter 23 538 8.9E-40 T 23-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 RD1_RS09315 f185dda42623334e0e4b9a34a997aaa1 592 PANTHER PTHR10283 14 216 5.0E-105 T 23-04-2016 RD1_RS09315 f185dda42623334e0e4b9a34a997aaa1 592 PANTHER PTHR10283 353 592 5.0E-105 T 23-04-2016 RD1_RS09315 f185dda42623334e0e4b9a34a997aaa1 592 Gene3D G3DSA:3.30.70.1450 311 388 3.6E-19 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS09315 f185dda42623334e0e4b9a34a997aaa1 592 Gene3D G3DSA:3.30.70.1450 227 304 2.3E-11 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS09315 f185dda42623334e0e4b9a34a997aaa1 592 SUPERFAMILY SSF116726 227 296 3.66E-10 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS09315 f185dda42623334e0e4b9a34a997aaa1 592 PANTHER PTHR10283:SF100 353 592 5.0E-105 T 23-04-2016 RD1_RS04845 333094cfb1797fd997e632507f7b3fd8 325 PANTHER PTHR33376:SF4 1 307 4.1E-85 T 23-04-2016 RD1_RS04845 333094cfb1797fd997e632507f7b3fd8 325 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 33 307 9.5E-75 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS04845 333094cfb1797fd997e632507f7b3fd8 325 PANTHER PTHR33376 1 307 4.1E-85 T 23-04-2016 RD1_RS04845 333094cfb1797fd997e632507f7b3fd8 325 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 34 276 8.4E-66 T 23-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 RD1_RS04845 333094cfb1797fd997e632507f7b3fd8 325 PIRSF PIRSF006470 1 322 4.8E-80 T 23-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 RD1_RS17680 02dcaac3ce62eaaf22bea1e9fd3372c2 297 PANTHER PTHR30193 1 295 1.8E-102 T 23-04-2016 RD1_RS17680 02dcaac3ce62eaaf22bea1e9fd3372c2 297 PANTHER PTHR30193:SF8 1 295 1.8E-102 T 23-04-2016 RD1_RS17680 02dcaac3ce62eaaf22bea1e9fd3372c2 297 SUPERFAMILY SSF161098 23 286 3.27E-55 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17680 02dcaac3ce62eaaf22bea1e9fd3372c2 297 Gene3D G3DSA:1.10.3720.10 27 284 3.4E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17680 02dcaac3ce62eaaf22bea1e9fd3372c2 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 283 8.3E-11 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS06245 713db778938a98d5a25da76091444f2f 197 PANTHER PTHR10108 8 190 1.8E-17 T 23-04-2016 RD1_RS06245 713db778938a98d5a25da76091444f2f 197 Pfam PF13649 Methyltransferase domain 44 132 3.8E-14 T 23-04-2016 RD1_RS06245 713db778938a98d5a25da76091444f2f 197 SUPERFAMILY SSF53335 17 187 1.47E-34 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS06245 713db778938a98d5a25da76091444f2f 197 PANTHER PTHR10108:SF705 8 190 1.8E-17 T 23-04-2016 RD1_RS06245 713db778938a98d5a25da76091444f2f 197 Gene3D G3DSA:3.40.50.150 8 176 3.9E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS06570 ec8a6560ae07e2e285127bb709b0ebaa 122 Gene3D G3DSA:2.40.150.20 1 122 1.0E-55 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RD1_RS06570 ec8a6560ae07e2e285127bb709b0ebaa 122 SUPERFAMILY SSF50193 1 122 2.62E-52 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RD1_RS06570 ec8a6560ae07e2e285127bb709b0ebaa 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.1E-58 T 23-04-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 RD1_RS06570 ec8a6560ae07e2e285127bb709b0ebaa 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 28.043 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RD1_RS06570 ec8a6560ae07e2e285127bb709b0ebaa 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 2.3E-56 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RD1_RS06570 ec8a6560ae07e2e285127bb709b0ebaa 122 SMART SM01374 1 122 2.3E-87 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RD1_RS06570 ec8a6560ae07e2e285127bb709b0ebaa 122 PANTHER PTHR11761 1 122 6.8E-76 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RD1_RS06570 ec8a6560ae07e2e285127bb709b0ebaa 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 23-04-2016 IPR019972 Ribosomal protein L14P, conserved site RD1_RS20420 17fe0410a367bcf44f8facf0d22ccee2 391 Gene3D G3DSA:3.40.33.10 5 146 6.7E-10 T 23-04-2016 IPR014044 CAP domain RD1_RS20420 17fe0410a367bcf44f8facf0d22ccee2 391 PANTHER PTHR31157 1 150 8.9E-31 T 23-04-2016 RD1_RS20420 17fe0410a367bcf44f8facf0d22ccee2 391 SUPERFAMILY SSF55797 5 147 1.7E-19 T 23-04-2016 IPR014044 CAP domain RD1_RS20420 17fe0410a367bcf44f8facf0d22ccee2 391 Pfam PF00188 Cysteine-rich secretory protein family 12 146 3.1E-14 T 23-04-2016 IPR014044 CAP domain RD1_RS18135 e46670375bff300111be5edb8c7f72fe 172 Pfam PF03061 Thioesterase superfamily 65 153 3.9E-8 T 23-04-2016 IPR006683 Thioesterase domain RD1_RS18135 e46670375bff300111be5edb8c7f72fe 172 SUPERFAMILY SSF54637 20 170 6.19E-23 T 23-04-2016 IPR029069 HotDog domain RD1_RS18135 e46670375bff300111be5edb8c7f72fe 172 PANTHER PTHR12418 13 171 9.5E-26 T 23-04-2016 RD1_RS18135 e46670375bff300111be5edb8c7f72fe 172 PANTHER PTHR12418:SF18 13 171 9.5E-26 T 23-04-2016 RD1_RS18135 e46670375bff300111be5edb8c7f72fe 172 Gene3D G3DSA:3.10.129.10 26 170 1.2E-27 T 23-04-2016 IPR029069 HotDog domain RD1_RS05625 7f11f918d5df10f817743d2e6c0b2e43 468 Pfam PF01554 MatE 27 184 2.0E-27 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS05625 7f11f918d5df10f817743d2e6c0b2e43 468 Pfam PF01554 MatE 243 394 2.8E-18 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS05625 7f11f918d5df10f817743d2e6c0b2e43 468 TIGRFAM TIGR00797 matE: MATE efflux family protein 28 410 2.1E-48 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS05625 7f11f918d5df10f817743d2e6c0b2e43 468 PIRSF PIRSF006603 1 450 2.6E-74 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS05625 7f11f918d5df10f817743d2e6c0b2e43 468 PANTHER PTHR11206 1 459 6.0E-92 T 23-04-2016 RD1_RS05625 7f11f918d5df10f817743d2e6c0b2e43 468 PANTHER PTHR11206:SF132 1 459 6.0E-92 T 23-04-2016 RD1_RS17660 2a5899d3589fa1960b5fc842b8a8c287 790 Gene3D G3DSA:3.30.1360.120 550 652 3.1E-34 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS17660 2a5899d3589fa1960b5fc842b8a8c287 790 Gene3D G3DSA:3.30.1360.120 411 463 3.1E-34 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS17660 2a5899d3589fa1960b5fc842b8a8c287 790 Gene3D G3DSA:2.40.30.110 700 774 4.6E-19 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS17660 2a5899d3589fa1960b5fc842b8a8c287 790 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 684 774 4.8E-20 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS17660 2a5899d3589fa1960b5fc842b8a8c287 790 Pfam PF09347 Domain of unknown function (DUF1989) 194 361 3.8E-41 T 23-04-2016 IPR018959 Domain of unknown function DUF1989 RD1_RS17660 2a5899d3589fa1960b5fc842b8a8c287 790 Gene3D G3DSA:3.30.70.1400 464 535 5.8E-17 T 23-04-2016 RD1_RS17660 2a5899d3589fa1960b5fc842b8a8c287 790 SUPERFAMILY SSF101790 700 789 1.62E-17 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RD1_RS17660 2a5899d3589fa1960b5fc842b8a8c287 790 SUPERFAMILY SSF103025 409 696 3.36E-79 T 23-04-2016 RD1_RS17660 2a5899d3589fa1960b5fc842b8a8c287 790 PANTHER PTHR31527:SF0 146 436 6.7E-24 T 23-04-2016 RD1_RS17660 2a5899d3589fa1960b5fc842b8a8c287 790 Pfam PF01571 Aminomethyltransferase folate-binding domain 416 674 3.4E-70 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS17660 2a5899d3589fa1960b5fc842b8a8c287 790 PANTHER PTHR31527 146 436 6.7E-24 T 23-04-2016 RD1_RS02500 d22db356acf7cac34d2c120ab9cc0403 378 PANTHER PTHR30483 1 367 4.0E-88 T 23-04-2016 RD1_RS02500 d22db356acf7cac34d2c120ab9cc0403 378 Pfam PF13458 Periplasmic binding protein 24 349 3.3E-68 T 23-04-2016 IPR028081 Leucine-binding protein domain RD1_RS02500 d22db356acf7cac34d2c120ab9cc0403 378 Gene3D G3DSA:3.40.50.2300 19 142 1.2E-40 T 23-04-2016 RD1_RS02500 d22db356acf7cac34d2c120ab9cc0403 378 Gene3D G3DSA:3.40.50.2300 290 341 1.2E-40 T 23-04-2016 RD1_RS02500 d22db356acf7cac34d2c120ab9cc0403 378 Gene3D G3DSA:3.40.50.2300 143 289 8.9E-25 T 23-04-2016 RD1_RS02500 d22db356acf7cac34d2c120ab9cc0403 378 SUPERFAMILY SSF53822 24 356 7.95E-80 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS02500 d22db356acf7cac34d2c120ab9cc0403 378 PANTHER PTHR30483:SF13 1 367 4.0E-88 T 23-04-2016 RD1_RS15320 2248f0dfeacdb2d0027f14c399217f6b 158 Gene3D G3DSA:3.10.129.10 8 139 3.0E-48 T 23-04-2016 IPR029069 HotDog domain RD1_RS15320 2248f0dfeacdb2d0027f14c399217f6b 158 Pfam PF13279 Thioesterase-like superfamily 13 131 1.1E-19 T 23-04-2016 RD1_RS15320 2248f0dfeacdb2d0027f14c399217f6b 158 SUPERFAMILY SSF54637 11 156 1.62E-47 T 23-04-2016 IPR029069 HotDog domain RD1_RS15320 2248f0dfeacdb2d0027f14c399217f6b 158 PANTHER PTHR31793:SF2 11 147 4.1E-51 T 23-04-2016 RD1_RS15320 2248f0dfeacdb2d0027f14c399217f6b 158 PANTHER PTHR31793 11 147 4.1E-51 T 23-04-2016 RD1_RS08490 5d14375bc3d7c16507ef7040ca406365 352 PANTHER PTHR24220:SF374 45 301 2.8E-136 T 23-04-2016 RD1_RS08490 5d14375bc3d7c16507ef7040ca406365 352 PANTHER PTHR24220:SF374 338 348 2.8E-136 T 23-04-2016 RD1_RS08490 5d14375bc3d7c16507ef7040ca406365 352 PANTHER PTHR24220:SF374 9 19 2.8E-136 T 23-04-2016 RD1_RS08490 5d14375bc3d7c16507ef7040ca406365 352 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 45 288 3.9E-103 T 23-04-2016 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 RD1_RS08490 5d14375bc3d7c16507ef7040ca406365 352 PANTHER PTHR24220 45 301 2.8E-136 T 23-04-2016 RD1_RS08490 5d14375bc3d7c16507ef7040ca406365 352 PANTHER PTHR24220 338 348 2.8E-136 T 23-04-2016 RD1_RS08490 5d14375bc3d7c16507ef7040ca406365 352 PANTHER PTHR24220 9 19 2.8E-136 T 23-04-2016 RD1_RS08490 5d14375bc3d7c16507ef7040ca406365 352 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS08490 5d14375bc3d7c16507ef7040ca406365 352 Gene3D G3DSA:3.40.50.300 33 269 1.4E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08490 5d14375bc3d7c16507ef7040ca406365 352 SUPERFAMILY SSF52540 43 268 2.16E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08490 5d14375bc3d7c16507ef7040ca406365 352 Pfam PF00005 ABC transporter 49 196 1.0E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS08490 5d14375bc3d7c16507ef7040ca406365 352 SMART SM00382 57 254 4.5E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS00085 1e0b66b82753106842d5c799a360f879 296 PANTHER PTHR11103 3 288 3.8E-45 T 23-04-2016 RD1_RS00085 1e0b66b82753106842d5c799a360f879 296 SUPERFAMILY SSF82282 3 288 1.83E-72 T 23-04-2016 IPR003726 Homocysteine-binding domain RD1_RS00085 1e0b66b82753106842d5c799a360f879 296 Pfam PF02574 Homocysteine S-methyltransferase 6 287 7.7E-55 T 23-04-2016 IPR003726 Homocysteine-binding domain RD1_RS00085 1e0b66b82753106842d5c799a360f879 296 Gene3D G3DSA:3.20.20.330 3 288 2.1E-68 T 23-04-2016 IPR003726 Homocysteine-binding domain RD1_RS00085 1e0b66b82753106842d5c799a360f879 296 PIRSF PIRSF037505 2 295 1.5E-10 T 23-04-2016 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 UniPathway: UPA00051 RD1_RS00085 1e0b66b82753106842d5c799a360f879 296 PANTHER PTHR11103:SF7 3 288 3.8E-45 T 23-04-2016 RD1_RS05510 b794d9dd0fb83807a0a2e9bf7d5da091 193 SUPERFAMILY SSF53254 1 191 4.28E-38 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RD1_RS05510 b794d9dd0fb83807a0a2e9bf7d5da091 193 Gene3D G3DSA:3.40.50.1240 5 183 2.4E-34 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RD1_RS05510 b794d9dd0fb83807a0a2e9bf7d5da091 193 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 182 4.7E-37 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RD1_RS05510 b794d9dd0fb83807a0a2e9bf7d5da091 193 PANTHER PTHR23029 5 179 7.5E-24 T 23-04-2016 RD1_RS05510 b794d9dd0fb83807a0a2e9bf7d5da091 193 SMART SM00855 3 152 6.0E-4 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RD1_RS09230 be1851750ec85ee72254d7f12dcffbc3 55 PANTHER PTHR15238:SF1 1 55 1.8E-19 T 23-04-2016 RD1_RS09230 be1851750ec85ee72254d7f12dcffbc3 55 SUPERFAMILY SSF57829 1 53 1.53E-16 T 23-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 RD1_RS09230 be1851750ec85ee72254d7f12dcffbc3 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 2.4E-22 T 23-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS09230 be1851750ec85ee72254d7f12dcffbc3 55 Pfam PF00471 Ribosomal protein L33 7 53 7.5E-15 T 23-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS09230 be1851750ec85ee72254d7f12dcffbc3 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 2 53 12.847 T 23-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS09230 be1851750ec85ee72254d7f12dcffbc3 55 PANTHER PTHR15238 1 55 1.8E-19 T 23-04-2016 RD1_RS09230 be1851750ec85ee72254d7f12dcffbc3 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 23-04-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 SUPERFAMILY SSF55874 488 636 6.68E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 Gene3D G3DSA:1.10.287.130 408 472 1.1E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 SUPERFAMILY SSF47384 404 484 2.94E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 SMART SM00387 524 637 5.9E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 Pfam PF00512 His Kinase A (phospho-acceptor) domain 418 484 2.6E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 SUPERFAMILY SSF158472 364 410 6.28E-5 T 23-04-2016 RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 SMART SM00388 417 485 2.3E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 PANTHER PTHR24423 1 15 1.0E-48 T 23-04-2016 RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 PANTHER PTHR24423 355 634 1.0E-48 T 23-04-2016 RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 528 635 6.9E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 SMART SM00304 361 413 2.3E-5 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 Gene3D G3DSA:3.30.565.10 473 634 1.6E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 Pfam PF00672 HAMP domain 342 404 6.3E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 PRINTS PR00344 Bacterial sensor protein C-terminal signature 562 576 1.7E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 PRINTS PR00344 Bacterial sensor protein C-terminal signature 595 613 1.7E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS20425 b457ff8c81f6f5d651d90bb572158c7a 647 PRINTS PR00344 Bacterial sensor protein C-terminal signature 621 634 1.7E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS07880 be5bc5a323f7b5425cc8905f9c1ec867 402 Gene3D G3DSA:1.20.1250.20 36 200 4.1E-26 T 23-04-2016 RD1_RS07880 be5bc5a323f7b5425cc8905f9c1ec867 402 PANTHER PTHR23501 21 387 1.1E-42 T 23-04-2016 RD1_RS07880 be5bc5a323f7b5425cc8905f9c1ec867 402 Pfam PF07690 Major Facilitator Superfamily 37 354 1.0E-38 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS07880 be5bc5a323f7b5425cc8905f9c1ec867 402 Gene3D G3DSA:1.20.1250.20 214 386 9.2E-11 T 23-04-2016 RD1_RS07880 be5bc5a323f7b5425cc8905f9c1ec867 402 SUPERFAMILY SSF103473 25 388 1.7E-49 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS05900 cb5a2347ce5aa7aa9583b9a1548da92a 485 PANTHER PTHR21581:SF3 35 351 3.4E-68 T 23-04-2016 RD1_RS05900 cb5a2347ce5aa7aa9583b9a1548da92a 485 SUPERFAMILY SSF56601 1 271 1.41E-74 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS05900 cb5a2347ce5aa7aa9583b9a1548da92a 485 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 35 252 4.1E-61 T 23-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RD1_RS05900 cb5a2347ce5aa7aa9583b9a1548da92a 485 Gene3D G3DSA:3.40.710.10 32 271 6.2E-86 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS05900 cb5a2347ce5aa7aa9583b9a1548da92a 485 PANTHER PTHR21581 35 351 3.4E-68 T 23-04-2016 RD1_RS05900 cb5a2347ce5aa7aa9583b9a1548da92a 485 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 139 152 2.2E-13 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RD1_RS05900 cb5a2347ce5aa7aa9583b9a1548da92a 485 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 59 70 2.2E-13 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RD1_RS05900 cb5a2347ce5aa7aa9583b9a1548da92a 485 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 112 129 2.2E-13 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RD1_RS02465 dd6eb25a3e2880168a6660a986510a2f 287 Pfam PF00753 Metallo-beta-lactamase superfamily 17 206 1.6E-23 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS02465 dd6eb25a3e2880168a6660a986510a2f 287 SMART SM00849 16 206 1.4E-21 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS02465 dd6eb25a3e2880168a6660a986510a2f 287 PANTHER PTHR11935:SF110 7 271 3.2E-105 T 23-04-2016 RD1_RS02465 dd6eb25a3e2880168a6660a986510a2f 287 Gene3D G3DSA:3.60.15.10 9 252 4.8E-49 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS02465 dd6eb25a3e2880168a6660a986510a2f 287 PANTHER PTHR11935 7 271 3.2E-105 T 23-04-2016 RD1_RS02465 dd6eb25a3e2880168a6660a986510a2f 287 SUPERFAMILY SSF56281 10 253 2.71E-48 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS01685 17348f3ddc42feee03cb06e75019d18b 95 Pfam PF02325 YGGT family 10 87 7.6E-15 T 23-04-2016 IPR003425 CCB3/YggT GO:0016020 RD1_RS01755 7a973269ec469c661045fd3f77937810 266 PANTHER PTHR21485:SF4 1 262 2.0E-72 T 23-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RD1_RS01755 7a973269ec469c661045fd3f77937810 266 Pfam PF02348 Cytidylyltransferase 7 230 9.8E-31 T 23-04-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RD1_RS01755 7a973269ec469c661045fd3f77937810 266 SUPERFAMILY SSF53448 3 260 2.17E-47 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS01755 7a973269ec469c661045fd3f77937810 266 PANTHER PTHR21485 1 262 2.0E-72 T 23-04-2016 RD1_RS01755 7a973269ec469c661045fd3f77937810 266 Gene3D G3DSA:3.90.550.10 1 263 7.4E-64 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS16240 c65d96bffd658afdb946ae52e6645d52 339 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 137 152 - T 23-04-2016 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: REACT_474|UniPathway: UPA00087 RD1_RS16240 c65d96bffd658afdb946ae52e6645d52 339 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 8 324 1.3E-109 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RD1_RS16240 c65d96bffd658afdb946ae52e6645d52 339 SUPERFAMILY SSF53271 78 313 6.3E-61 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS16240 c65d96bffd658afdb946ae52e6645d52 339 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 8 129 1.8E-43 T 23-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RD1_RS16240 c65d96bffd658afdb946ae52e6645d52 339 SMART SM01400 7 129 1.0E-67 T 23-04-2016 RD1_RS16240 c65d96bffd658afdb946ae52e6645d52 339 Pfam PF14572 Phosphoribosyl synthetase-associated domain 211 323 3.1E-22 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RD1_RS16240 c65d96bffd658afdb946ae52e6645d52 339 Gene3D G3DSA:3.40.50.2020 169 295 4.3E-48 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS16240 c65d96bffd658afdb946ae52e6645d52 339 PANTHER PTHR10210:SF41 8 329 1.2E-159 T 23-04-2016 RD1_RS16240 c65d96bffd658afdb946ae52e6645d52 339 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 7 324 44.939 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RD1_RS16240 c65d96bffd658afdb946ae52e6645d52 339 PANTHER PTHR10210 8 329 1.2E-159 T 23-04-2016 RD1_RS16240 c65d96bffd658afdb946ae52e6645d52 339 Gene3D G3DSA:3.40.50.2020 4 168 1.0E-68 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS00620 309a1b62cb7c4fe0699a8fefcf9f3109 242 PANTHER PTHR10108 26 179 1.2E-20 T 23-04-2016 RD1_RS00620 309a1b62cb7c4fe0699a8fefcf9f3109 242 TIGRFAM TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase 25 240 3.3E-76 T 23-04-2016 IPR010251 Magnesium-protoporphyrin IX methyltransferase GO:0015995|GO:0046406 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RD1_RS00620 309a1b62cb7c4fe0699a8fefcf9f3109 242 PANTHER PTHR10108:SF721 26 179 1.2E-20 T 23-04-2016 RD1_RS00620 309a1b62cb7c4fe0699a8fefcf9f3109 242 Gene3D G3DSA:3.40.50.150 27 178 8.6E-24 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS00620 309a1b62cb7c4fe0699a8fefcf9f3109 242 SUPERFAMILY SSF53335 18 186 3.32E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS00620 309a1b62cb7c4fe0699a8fefcf9f3109 242 Pfam PF05175 Methyltransferase small domain 59 143 7.8E-8 T 23-04-2016 IPR007848 Methyltransferase small domain GO:0008168 RD1_RS00620 309a1b62cb7c4fe0699a8fefcf9f3109 242 Pfam PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus 144 241 2.7E-28 T 23-04-2016 IPR010940 Magnesium-protoporphyrin IX methyltransferase, C-terminal GO:0015995|GO:0046406 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RD1_RS04160 f0d676241eec802ed71a9f7b1f90619f 199 ProSitePatterns PS00211 ABC transporters family signature. 115 129 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS04160 f0d676241eec802ed71a9f7b1f90619f 199 SMART SM00382 26 192 6.4E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS04160 f0d676241eec802ed71a9f7b1f90619f 199 Pfam PF00005 ABC transporter 18 142 6.9E-24 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS04160 f0d676241eec802ed71a9f7b1f90619f 199 SUPERFAMILY SSF52540 7 190 1.41E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04160 f0d676241eec802ed71a9f7b1f90619f 199 PANTHER PTHR24220 5 189 2.0E-56 T 23-04-2016 RD1_RS04160 f0d676241eec802ed71a9f7b1f90619f 199 Gene3D G3DSA:3.40.50.300 2 189 2.2E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17730 047f13639604ffe34d0f2549487f4c4e 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS17730 047f13639604ffe34d0f2549487f4c4e 246 Gene3D G3DSA:3.40.50.720 1 244 7.4E-73 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17730 047f13639604ffe34d0f2549487f4c4e 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 4.8E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17730 047f13639604ffe34d0f2549487f4c4e 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 4.8E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17730 047f13639604ffe34d0f2549487f4c4e 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 4.8E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17730 047f13639604ffe34d0f2549487f4c4e 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 4.8E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17730 047f13639604ffe34d0f2549487f4c4e 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 4.8E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17730 047f13639604ffe34d0f2549487f4c4e 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 4.8E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17730 047f13639604ffe34d0f2549487f4c4e 246 SUPERFAMILY SSF51735 1 243 3.06E-70 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17730 047f13639604ffe34d0f2549487f4c4e 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 8.2E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17730 047f13639604ffe34d0f2549487f4c4e 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 8.2E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17730 047f13639604ffe34d0f2549487f4c4e 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 8.2E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17730 047f13639604ffe34d0f2549487f4c4e 246 Pfam PF00106 short chain dehydrogenase 7 196 1.7E-51 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17730 047f13639604ffe34d0f2549487f4c4e 246 PANTHER PTHR24322 153 184 4.5E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17730 047f13639604ffe34d0f2549487f4c4e 246 PANTHER PTHR24322 11 137 4.5E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19215 821979b7f42921539d06bdd7fc9e59f2 124 Pfam PF02472 Biopolymer transport protein ExbD/TolR 13 119 1.0E-5 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RD1_RS12295 5d779ca0321e1094d45b34e0048a6d70 156 PANTHER PTHR30295:SF6 1 155 3.3E-36 T 23-04-2016 RD1_RS12295 5d779ca0321e1094d45b34e0048a6d70 156 PIRSF PIRSF005900 1 156 3.8E-39 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RD1_RS12295 5d779ca0321e1094d45b34e0048a6d70 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 38 54 8.2E-8 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RD1_RS12295 5d779ca0321e1094d45b34e0048a6d70 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 133 151 8.2E-8 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RD1_RS12295 5d779ca0321e1094d45b34e0048a6d70 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 62 78 8.2E-8 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RD1_RS12295 5d779ca0321e1094d45b34e0048a6d70 156 PANTHER PTHR30295 1 155 3.3E-36 T 23-04-2016 RD1_RS12295 5d779ca0321e1094d45b34e0048a6d70 156 Pfam PF00210 Ferritin-like domain 18 155 7.3E-19 T 23-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RD1_RS12295 5d779ca0321e1094d45b34e0048a6d70 156 Gene3D G3DSA:1.20.1260.10 1 155 3.2E-45 T 23-04-2016 IPR012347 Ferritin-related RD1_RS12295 5d779ca0321e1094d45b34e0048a6d70 156 SUPERFAMILY SSF47240 12 155 4.06E-37 T 23-04-2016 IPR009078 Ferritin-like superfamily RD1_RS08965 637c22b851dedff2ed450ec428b057ed 393 PANTHER PTHR11808 7 393 1.5E-193 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RD1_RS08965 637c22b851dedff2ed450ec428b057ed 393 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 9 390 6.2E-165 T 23-04-2016 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 UniPathway: UPA00051 RD1_RS08965 637c22b851dedff2ed450ec428b057ed 393 PIRSF PIRSF001434 1 393 1.3E-123 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RD1_RS08965 637c22b851dedff2ed450ec428b057ed 393 Gene3D G3DSA:3.40.640.10 7 257 2.6E-89 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS08965 637c22b851dedff2ed450ec428b057ed 393 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 9 390 2.5E-127 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RD1_RS08965 637c22b851dedff2ed450ec428b057ed 393 SUPERFAMILY SSF53383 28 391 2.69E-113 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS08965 637c22b851dedff2ed450ec428b057ed 393 PANTHER PTHR11808:SF36 7 393 1.5E-193 T 23-04-2016 RD1_RS08965 637c22b851dedff2ed450ec428b057ed 393 Gene3D G3DSA:3.90.1150.10 258 393 7.5E-44 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS01395 1bf22694788acd20a4d8cb03ebce71f7 209 PANTHER PTHR10954 6 201 2.0E-59 T 23-04-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 RD1_RS01395 1bf22694788acd20a4d8cb03ebce71f7 209 Pfam PF01351 Ribonuclease HII 20 196 4.2E-40 T 23-04-2016 IPR024567 Ribonuclease HII/HIII domain RD1_RS01395 1bf22694788acd20a4d8cb03ebce71f7 209 Hamap MF_00052_B Ribonuclease HII [rnhB]. 18 197 35.582 T 23-04-2016 IPR022898 Ribonuclease HII GO:0004523 RD1_RS01395 1bf22694788acd20a4d8cb03ebce71f7 209 SUPERFAMILY SSF53098 9 202 8.5E-64 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS01395 1bf22694788acd20a4d8cb03ebce71f7 209 Gene3D G3DSA:3.30.420.10 18 158 2.2E-41 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS08440 f21d8b24e130466de4f5010ee5d2943c 627 PANTHER PTHR16254:SF6 1 170 6.0E-199 T 23-04-2016 RD1_RS08440 f21d8b24e130466de4f5010ee5d2943c 627 PANTHER PTHR16254:SF6 187 582 6.0E-199 T 23-04-2016 RD1_RS08440 f21d8b24e130466de4f5010ee5d2943c 627 Pfam PF02254 TrkA-N domain 428 541 1.8E-23 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RD1_RS08440 f21d8b24e130466de4f5010ee5d2943c 627 Gene3D G3DSA:3.40.50.720 423 557 1.5E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS08440 f21d8b24e130466de4f5010ee5d2943c 627 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 12 310 4.7E-73 T 23-04-2016 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 RD1_RS08440 f21d8b24e130466de4f5010ee5d2943c 627 PANTHER PTHR16254 1 170 6.0E-199 T 23-04-2016 RD1_RS08440 f21d8b24e130466de4f5010ee5d2943c 627 PANTHER PTHR16254 187 582 6.0E-199 T 23-04-2016 RD1_RS08440 f21d8b24e130466de4f5010ee5d2943c 627 SUPERFAMILY SSF51735 425 565 6.89E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS08440 f21d8b24e130466de4f5010ee5d2943c 627 Pfam PF00999 Sodium/hydrogen exchanger family 12 400 2.2E-60 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RD1_RS08895 ae1d1b0d49e36464adb935c8cd2eb01d 65 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 4 58 1.6E-17 T 23-04-2016 IPR019201 Protein of unknown function DUF2065 RD1_RS12975 495b24d1acc269db89dad9dab66845be 380 SUPERFAMILY SSF53383 4 378 1.99E-91 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS12975 495b24d1acc269db89dad9dab66845be 380 Gene3D G3DSA:3.40.640.10 44 247 5.4E-50 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS12975 495b24d1acc269db89dad9dab66845be 380 PANTHER PTHR11751 5 378 4.1E-154 T 23-04-2016 RD1_RS12975 495b24d1acc269db89dad9dab66845be 380 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 225 238 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 RD1_RS12975 495b24d1acc269db89dad9dab66845be 380 Pfam PF00155 Aminotransferase class I and II 30 372 2.2E-49 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS12975 495b24d1acc269db89dad9dab66845be 380 Gene3D G3DSA:3.90.1150.10 248 378 1.7E-37 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS12975 495b24d1acc269db89dad9dab66845be 380 PANTHER PTHR11751:SF401 5 378 4.1E-154 T 23-04-2016 RD1_RS11400 14391776ac5fdedab9be11193ca3cb87 253 Pfam PF12277 Protein of unknown function (DUF3618) 3 47 3.5E-8 T 23-04-2016 IPR022062 Protein of unknown function DUF3618 RD1_RS13845 7dc583b5781dfa7cd4de30756e995c37 459 Pfam PF02779 Transketolase, pyrimidine binding domain 136 310 4.8E-45 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RD1_RS13845 7dc583b5781dfa7cd4de30756e995c37 459 SUPERFAMILY SSF52518 136 337 2.41E-64 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS13845 7dc583b5781dfa7cd4de30756e995c37 459 Gene3D G3DSA:3.40.50.970 135 327 6.0E-92 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS13845 7dc583b5781dfa7cd4de30756e995c37 459 PANTHER PTHR11624 35 104 1.0E-167 T 23-04-2016 IPR033247 Transketolase family RD1_RS13845 7dc583b5781dfa7cd4de30756e995c37 459 PANTHER PTHR11624 124 459 1.0E-167 T 23-04-2016 IPR033247 Transketolase family RD1_RS13845 7dc583b5781dfa7cd4de30756e995c37 459 SUPERFAMILY SSF52922 321 456 1.15E-44 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RD1_RS13845 7dc583b5781dfa7cd4de30756e995c37 459 SUPERFAMILY SSF51230 1 94 1.31E-28 T 23-04-2016 IPR011053 Single hybrid motif RD1_RS13845 7dc583b5781dfa7cd4de30756e995c37 459 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RD1_RS13845 7dc583b5781dfa7cd4de30756e995c37 459 Gene3D G3DSA:2.40.50.100 1 95 5.5E-34 T 23-04-2016 RD1_RS13845 7dc583b5781dfa7cd4de30756e995c37 459 PANTHER PTHR11624:SF11 35 104 1.0E-167 T 23-04-2016 RD1_RS13845 7dc583b5781dfa7cd4de30756e995c37 459 PANTHER PTHR11624:SF11 124 459 1.0E-167 T 23-04-2016 RD1_RS13845 7dc583b5781dfa7cd4de30756e995c37 459 Pfam PF02780 Transketolase, C-terminal domain 327 449 1.2E-42 T 23-04-2016 IPR033248 Transketolase, C-terminal domain RD1_RS13845 7dc583b5781dfa7cd4de30756e995c37 459 Gene3D G3DSA:3.40.50.920 328 456 1.5E-46 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RD1_RS13845 7dc583b5781dfa7cd4de30756e995c37 459 Pfam PF00364 Biotin-requiring enzyme 4 77 5.9E-20 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RD1_RS13845 7dc583b5781dfa7cd4de30756e995c37 459 SMART SM00861 137 312 4.1E-55 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RD1_RS16325 fdc98e085000edd71c4bc73185cce41f 166 PANTHER PTHR34584 11 166 8.1E-39 T 23-04-2016 RD1_RS16325 fdc98e085000edd71c4bc73185cce41f 166 PIRSF PIRSF019239 5 166 3.0E-48 T 23-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 RD1_RS16325 fdc98e085000edd71c4bc73185cce41f 166 PANTHER PTHR34584:SF1 11 166 8.1E-39 T 23-04-2016 RD1_RS16325 fdc98e085000edd71c4bc73185cce41f 166 Pfam PF01899 Na+/H+ ion antiporter subunit 16 164 2.5E-45 T 23-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 RD1_RS04310 fb449e7dea4c620d06c3196dcfa92388 112 PANTHER PTHR30115 2 112 3.3E-59 T 23-04-2016 RD1_RS04310 fb449e7dea4c620d06c3196dcfa92388 112 PRINTS PR00340 P-II protein signature 83 103 3.0E-38 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RD1_RS04310 fb449e7dea4c620d06c3196dcfa92388 112 PRINTS PR00340 P-II protein signature 2 17 3.0E-38 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RD1_RS04310 fb449e7dea4c620d06c3196dcfa92388 112 PRINTS PR00340 P-II protein signature 23 41 3.0E-38 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RD1_RS04310 fb449e7dea4c620d06c3196dcfa92388 112 PRINTS PR00340 P-II protein signature 52 75 3.0E-38 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RD1_RS04310 fb449e7dea4c620d06c3196dcfa92388 112 PANTHER PTHR30115:SF15 2 112 3.3E-59 T 23-04-2016 RD1_RS04310 fb449e7dea4c620d06c3196dcfa92388 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 23-04-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 RD1_RS04310 fb449e7dea4c620d06c3196dcfa92388 112 SUPERFAMILY SSF54913 2 112 2.07E-42 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta RD1_RS04310 fb449e7dea4c620d06c3196dcfa92388 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 23-04-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 RD1_RS04310 fb449e7dea4c620d06c3196dcfa92388 112 PIRSF PIRSF039144 1 112 1.9E-52 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RD1_RS04310 fb449e7dea4c620d06c3196dcfa92388 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 5.7E-41 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RD1_RS04310 fb449e7dea4c620d06c3196dcfa92388 112 SMART SM00938 4 105 1.0E-60 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RD1_RS04310 fb449e7dea4c620d06c3196dcfa92388 112 Gene3D G3DSA:3.30.70.120 2 112 1.7E-47 T 23-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RD1_RS16385 d90b612e30a9c06d1034f8fee705a3fb 105 Gene3D G3DSA:1.10.287.1080 28 85 1.5E-6 T 23-04-2016 RD1_RS16385 d90b612e30a9c06d1034f8fee705a3fb 105 PANTHER PTHR21256 1 101 6.6E-39 T 23-04-2016 RD1_RS16385 d90b612e30a9c06d1034f8fee705a3fb 105 SUPERFAMILY SSF101386 2 91 4.86E-26 T 23-04-2016 RD1_RS16385 d90b612e30a9c06d1034f8fee705a3fb 105 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 7 89 2.9E-18 T 23-04-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31|UniPathway: UPA00031 RD1_RS16385 d90b612e30a9c06d1034f8fee705a3fb 105 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 3 86 2.1E-30 T 23-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 RD1_RS16385 d90b612e30a9c06d1034f8fee705a3fb 105 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 1 86 17.952 T 23-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 RD1_RS10735 546c9910d8e2a2705f0c5e8b06bb91db 173 SMART SM00903 21 164 5.4E-48 T 23-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RD1_RS10735 546c9910d8e2a2705f0c5e8b06bb91db 173 PANTHER PTHR30466 13 164 2.6E-29 T 23-04-2016 RD1_RS10735 546c9910d8e2a2705f0c5e8b06bb91db 173 PANTHER PTHR30466:SF2 13 164 2.6E-29 T 23-04-2016 RD1_RS10735 546c9910d8e2a2705f0c5e8b06bb91db 173 SUPERFAMILY SSF50475 15 163 1.77E-40 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS10735 546c9910d8e2a2705f0c5e8b06bb91db 173 Gene3D G3DSA:2.30.110.10 11 163 4.7E-48 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS10735 546c9910d8e2a2705f0c5e8b06bb91db 173 Pfam PF01613 Flavin reductase like domain 23 165 9.7E-30 T 23-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 SUPERFAMILY SSF56327 144 311 1.35E-55 T 23-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 Gene3D G3DSA:3.40.50.720 2 144 5.2E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 PANTHER PTHR11540:SF16 1 306 2.4E-147 T 23-04-2016 RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 PANTHER PTHR11540 1 306 2.4E-147 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 3 307 4.4E-128 T 23-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 Hamap MF_00487 Malate dehydrogenase [mdh]. 4 313 40.584 T 23-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 5 143 5.7E-38 T 23-04-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 PIRSF PIRSF000102 1 313 4.5E-102 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 306 4.6E-29 T 23-04-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 PRINTS PR00086 L-lactate dehydrogenase signature 117 137 1.0E-27 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 PRINTS PR00086 L-lactate dehydrogenase signature 171 184 1.0E-27 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 PRINTS PR00086 L-lactate dehydrogenase signature 29 53 1.0E-27 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 PRINTS PR00086 L-lactate dehydrogenase signature 141 159 1.0E-27 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 PRINTS PR00086 L-lactate dehydrogenase signature 5 29 1.0E-27 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 Gene3D G3DSA:3.90.110.10 145 313 5.4E-61 T 23-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RD1_RS07465 eefa439723879537ff6b6e3bfed7dc50 320 SUPERFAMILY SSF51735 5 144 1.83E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03760 09d0bca39476235e6d5717e3d245a409 417 Gene3D G3DSA:3.80.30.20 137 364 1.8E-63 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RD1_RS03760 09d0bca39476235e6d5717e3d245a409 417 SUPERFAMILY SSF102114 113 355 7.19E-52 T 23-04-2016 RD1_RS03760 09d0bca39476235e6d5717e3d245a409 417 PANTHER PTHR11918 6 410 6.7E-113 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RD1_RS03760 09d0bca39476235e6d5717e3d245a409 417 Pfam PF04055 Radical SAM superfamily 142 313 4.3E-22 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RD1_RS03760 09d0bca39476235e6d5717e3d245a409 417 PANTHER PTHR11918:SF45 6 410 6.7E-113 T 23-04-2016 RD1_RS03760 09d0bca39476235e6d5717e3d245a409 417 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 6 404 1.5E-100 T 23-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 RD1_RS03760 09d0bca39476235e6d5717e3d245a409 417 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 6 396 7.7E-135 T 23-04-2016 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 RD1_RS03760 09d0bca39476235e6d5717e3d245a409 417 Pfam PF00919 Uncharacterized protein family UPF0004 6 90 1.6E-16 T 23-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 RD1_RS03760 09d0bca39476235e6d5717e3d245a409 417 SMART SM00729 137 355 1.0E-50 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RD1_RS03760 09d0bca39476235e6d5717e3d245a409 417 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 141 161 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RD1_RS15280 47c9697f90c1f0ac5e53d71d0dda2b50 246 PANTHER PTHR24322 155 186 2.4E-43 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15280 47c9697f90c1f0ac5e53d71d0dda2b50 246 PANTHER PTHR24322 7 138 2.4E-43 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15280 47c9697f90c1f0ac5e53d71d0dda2b50 246 SUPERFAMILY SSF51735 5 245 2.11E-72 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15280 47c9697f90c1f0ac5e53d71d0dda2b50 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.9E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15280 47c9697f90c1f0ac5e53d71d0dda2b50 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 1.9E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15280 47c9697f90c1f0ac5e53d71d0dda2b50 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.9E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15280 47c9697f90c1f0ac5e53d71d0dda2b50 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.9E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15280 47c9697f90c1f0ac5e53d71d0dda2b50 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.9E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15280 47c9697f90c1f0ac5e53d71d0dda2b50 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.9E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15280 47c9697f90c1f0ac5e53d71d0dda2b50 246 Gene3D G3DSA:3.40.50.720 4 245 1.1E-76 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15280 47c9697f90c1f0ac5e53d71d0dda2b50 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 245 3.8E-59 T 23-04-2016 RD1_RS15280 47c9697f90c1f0ac5e53d71d0dda2b50 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.8E-13 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15280 47c9697f90c1f0ac5e53d71d0dda2b50 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.8E-13 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15280 47c9697f90c1f0ac5e53d71d0dda2b50 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.8E-13 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS15280 47c9697f90c1f0ac5e53d71d0dda2b50 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS05965 1fb59189f607182c7c0092c70945b289 553 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 108 457 5.7E-62 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain RD1_RS05965 1fb59189f607182c7c0092c70945b289 553 Gene3D G3DSA:3.10.105.10 338 521 1.6E-35 T 23-04-2016 RD1_RS05965 1fb59189f607182c7c0092c70945b289 553 Gene3D G3DSA:3.90.76.10 79 227 6.8E-27 T 23-04-2016 RD1_RS05965 1fb59189f607182c7c0092c70945b289 553 SUPERFAMILY SSF53850 76 541 1.05E-98 T 23-04-2016 RD1_RS05965 1fb59189f607182c7c0092c70945b289 553 Gene3D G3DSA:3.40.190.10 228 337 2.4E-18 T 23-04-2016 RD1_RS05965 1fb59189f607182c7c0092c70945b289 553 PIRSF PIRSF002741 26 533 5.3E-54 T 23-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RD1_RS05965 1fb59189f607182c7c0092c70945b289 553 PANTHER PTHR30290 79 536 8.0E-69 T 23-04-2016 RD1_RS12810 a1c06451bb40f1648b4feed52ede5820 151 Gene3D G3DSA:1.20.1550.10 6 147 3.6E-20 T 23-04-2016 IPR023380 Disulphide bond formation protein DsbB-like domain RD1_RS12810 a1c06451bb40f1648b4feed52ede5820 151 Pfam PF02600 Disulfide bond formation protein DsbB 5 146 1.7E-31 T 23-04-2016 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 RD1_RS12810 a1c06451bb40f1648b4feed52ede5820 151 PIRSF PIRSF033913 3 151 3.2E-30 T 23-04-2016 IPR024199 Uncharacterised conserved protein, DsbB-like RD1_RS12810 a1c06451bb40f1648b4feed52ede5820 151 SUPERFAMILY SSF158442 9 147 2.09E-36 T 23-04-2016 RD1_RS17845 9d490ddd7697e7342e2fd52de00e2652 395 Gene3D G3DSA:1.20.1250.20 20 188 5.4E-10 T 23-04-2016 RD1_RS17845 9d490ddd7697e7342e2fd52de00e2652 395 SUPERFAMILY SSF103473 20 383 1.57E-32 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS17845 9d490ddd7697e7342e2fd52de00e2652 395 PANTHER PTHR23514:SF13 22 378 2.9E-35 T 23-04-2016 RD1_RS17845 9d490ddd7697e7342e2fd52de00e2652 395 PANTHER PTHR23514 22 378 2.9E-35 T 23-04-2016 RD1_RS17845 9d490ddd7697e7342e2fd52de00e2652 395 Gene3D G3DSA:1.20.1250.20 209 394 1.7E-15 T 23-04-2016 RD1_RS17845 9d490ddd7697e7342e2fd52de00e2652 395 Pfam PF07690 Major Facilitator Superfamily 223 381 6.0E-13 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS03645 ae9541f62dc390faaafa27df52e80fc2 568 Pfam PF06527 TniQ 10 93 2.4E-8 T 23-04-2016 IPR009492 TniQ RD1_RS11135 325faf3f889d93dae758b2132e576f9c 295 Gene3D G3DSA:3.20.20.370 2 293 7.5E-76 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RD1_RS11135 325faf3f889d93dae758b2132e576f9c 295 PANTHER PTHR10587 6 288 4.7E-74 T 23-04-2016 RD1_RS11135 325faf3f889d93dae758b2132e576f9c 295 PANTHER PTHR10587:SF72 6 288 4.7E-74 T 23-04-2016 RD1_RS11135 325faf3f889d93dae758b2132e576f9c 295 SUPERFAMILY SSF88713 2 293 1.64E-62 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RD1_RS11135 325faf3f889d93dae758b2132e576f9c 295 Pfam PF01522 Polysaccharide deacetylase 69 174 8.8E-13 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RD1_RS03245 bc5909320456d51dc207838deaeb5475 358 PANTHER PTHR30482:SF5 1 355 7.0E-83 T 23-04-2016 RD1_RS03245 bc5909320456d51dc207838deaeb5475 358 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 333 3.7E-31 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS03245 bc5909320456d51dc207838deaeb5475 358 PANTHER PTHR30482 1 355 7.0E-83 T 23-04-2016 RD1_RS10155 b94873f68b7b1cda7ae337247dce1e1f 507 SUPERFAMILY SSF56801 10 499 7.06E-122 T 23-04-2016 RD1_RS10155 b94873f68b7b1cda7ae337247dce1e1f 507 Gene3D G3DSA:3.40.50.980 11 163 2.2E-23 T 23-04-2016 RD1_RS10155 b94873f68b7b1cda7ae337247dce1e1f 507 PANTHER PTHR24095 47 499 6.9E-133 T 23-04-2016 RD1_RS10155 b94873f68b7b1cda7ae337247dce1e1f 507 ProSitePatterns PS00455 Putative AMP-binding domain signature. 159 170 - T 23-04-2016 IPR020845 AMP-binding, conserved site RD1_RS10155 b94873f68b7b1cda7ae337247dce1e1f 507 PANTHER PTHR24095:SF171 47 499 6.9E-133 T 23-04-2016 RD1_RS10155 b94873f68b7b1cda7ae337247dce1e1f 507 Gene3D G3DSA:3.30.300.30 406 497 1.5E-26 T 23-04-2016 RD1_RS10155 b94873f68b7b1cda7ae337247dce1e1f 507 Gene3D G3DSA:2.30.38.10 335 402 1.1E-16 T 23-04-2016 RD1_RS10155 b94873f68b7b1cda7ae337247dce1e1f 507 Pfam PF13193 AMP-binding enzyme C-terminal domain 418 491 2.4E-14 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RD1_RS10155 b94873f68b7b1cda7ae337247dce1e1f 507 Gene3D G3DSA:3.40.50.980 164 319 4.1E-35 T 23-04-2016 RD1_RS10155 b94873f68b7b1cda7ae337247dce1e1f 507 Pfam PF00501 AMP-binding enzyme 12 409 7.9E-80 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RD1_RS11015 64423258a72dcf3c35081d9e0ba424a1 282 PANTHER PTHR11717:SF18 119 272 1.2E-29 T 23-04-2016 RD1_RS11015 64423258a72dcf3c35081d9e0ba424a1 282 Gene3D G3DSA:3.40.50.270 117 252 8.8E-39 T 23-04-2016 RD1_RS11015 64423258a72dcf3c35081d9e0ba424a1 282 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 119 252 3.3E-18 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RD1_RS11015 64423258a72dcf3c35081d9e0ba424a1 282 PANTHER PTHR11717 119 272 1.2E-29 T 23-04-2016 RD1_RS11015 64423258a72dcf3c35081d9e0ba424a1 282 SMART SM00226 117 255 1.4E-41 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RD1_RS11015 64423258a72dcf3c35081d9e0ba424a1 282 SUPERFAMILY SSF46785 5 92 1.93E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11015 64423258a72dcf3c35081d9e0ba424a1 282 SMART SM00418 7 88 4.5E-10 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS11015 64423258a72dcf3c35081d9e0ba424a1 282 Gene3D G3DSA:1.10.10.10 9 108 7.2E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11015 64423258a72dcf3c35081d9e0ba424a1 282 SUPERFAMILY SSF52788 117 255 1.1E-38 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RD1_RS11015 64423258a72dcf3c35081d9e0ba424a1 282 Pfam PF12840 Helix-turn-helix domain 9 68 6.3E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS09550 96be71599c11a0734887e796ddea2348 278 Pfam PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family 7 124 5.1E-11 T 23-04-2016 IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase GO:0003854|GO:0006694|GO:0016616|GO:0055114 RD1_RS09550 96be71599c11a0734887e796ddea2348 278 PANTHER PTHR10366:SF476 3 210 6.6E-30 T 23-04-2016 RD1_RS09550 96be71599c11a0734887e796ddea2348 278 PANTHER PTHR10366 3 210 6.6E-30 T 23-04-2016 RD1_RS09550 96be71599c11a0734887e796ddea2348 278 SUPERFAMILY SSF51735 1 229 6.61E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS09550 96be71599c11a0734887e796ddea2348 278 Gene3D G3DSA:3.40.50.720 1 211 1.2E-23 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS18310 5ccbfeff60449d7ce3ae23080449d87c 386 PRINTS PR00723 Subtilisin serine protease family (S8) signature 325 341 2.8E-6 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related RD1_RS18310 5ccbfeff60449d7ce3ae23080449d87c 386 PRINTS PR00723 Subtilisin serine protease family (S8) signature 175 188 2.8E-6 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related RD1_RS18310 5ccbfeff60449d7ce3ae23080449d87c 386 PRINTS PR00723 Subtilisin serine protease family (S8) signature 140 159 2.8E-6 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related RD1_RS18310 5ccbfeff60449d7ce3ae23080449d87c 386 PANTHER PTHR10795:SF356 95 376 1.2E-25 T 23-04-2016 RD1_RS18310 5ccbfeff60449d7ce3ae23080449d87c 386 Gene3D G3DSA:3.40.50.200 111 381 5.8E-44 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RD1_RS18310 5ccbfeff60449d7ce3ae23080449d87c 386 SUPERFAMILY SSF52743 124 378 2.49E-42 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RD1_RS18310 5ccbfeff60449d7ce3ae23080449d87c 386 PANTHER PTHR10795 95 376 1.2E-25 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related RD1_RS18310 5ccbfeff60449d7ce3ae23080449d87c 386 Pfam PF00082 Subtilase family 177 376 2.5E-16 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RD1_RS02260 480ae4aabaeaae0cbe0de45704e9db40 308 Gene3D G3DSA:3.40.50.2300 146 275 6.9E-17 T 23-04-2016 RD1_RS02260 480ae4aabaeaae0cbe0de45704e9db40 308 PANTHER PTHR30036 1 308 3.4E-41 T 23-04-2016 RD1_RS02260 480ae4aabaeaae0cbe0de45704e9db40 308 Gene3D G3DSA:3.40.50.2300 26 145 3.5E-29 T 23-04-2016 RD1_RS02260 480ae4aabaeaae0cbe0de45704e9db40 308 Pfam PF13407 Periplasmic binding protein domain 28 275 2.5E-38 T 23-04-2016 IPR025997 Periplasmic binding protein RD1_RS02260 480ae4aabaeaae0cbe0de45704e9db40 308 SUPERFAMILY SSF53822 25 299 3.37E-47 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS02260 480ae4aabaeaae0cbe0de45704e9db40 308 PANTHER PTHR30036:SF2 1 308 3.4E-41 T 23-04-2016 RD1_RS03860 08402d302a51f781f9d553be488978fb 431 SUPERFAMILY SSF53383 20 422 3.81E-129 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS03860 08402d302a51f781f9d553be488978fb 431 PANTHER PTHR11986:SF17 4 430 1.8E-181 T 23-04-2016 RD1_RS03860 08402d302a51f781f9d553be488978fb 431 Pfam PF00202 Aminotransferase class-III 21 420 5.4E-126 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS03860 08402d302a51f781f9d553be488978fb 431 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 10 422 6.8E-166 T 23-04-2016 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 RD1_RS03860 08402d302a51f781f9d553be488978fb 431 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 235 272 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS03860 08402d302a51f781f9d553be488978fb 431 PANTHER PTHR11986 4 430 1.8E-181 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS03860 08402d302a51f781f9d553be488978fb 431 Gene3D G3DSA:3.40.640.10 58 303 2.4E-81 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS03860 08402d302a51f781f9d553be488978fb 431 Gene3D G3DSA:3.90.1150.10 304 424 2.0E-40 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS09040 2c0c2390490032624e127a391acf67ab 151 SMART SM00344 2 111 5.6E-20 T 23-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RD1_RS09040 2c0c2390490032624e127a391acf67ab 151 PANTHER PTHR30154 2 151 2.0E-34 T 23-04-2016 RD1_RS09040 2c0c2390490032624e127a391acf67ab 151 PANTHER PTHR30154:SF28 2 151 2.0E-34 T 23-04-2016 RD1_RS09040 2c0c2390490032624e127a391acf67ab 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 1.2E-10 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS09040 2c0c2390490032624e127a391acf67ab 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 1.2E-10 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS09040 2c0c2390490032624e127a391acf67ab 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 1.2E-10 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS09040 2c0c2390490032624e127a391acf67ab 151 SUPERFAMILY SSF54909 62 151 2.41E-14 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS09040 2c0c2390490032624e127a391acf67ab 151 SUPERFAMILY SSF46785 1 62 5.4E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS09040 2c0c2390490032624e127a391acf67ab 151 Gene3D G3DSA:1.10.10.10 1 53 4.2E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS09040 2c0c2390490032624e127a391acf67ab 151 Gene3D G3DSA:3.30.70.920 54 151 9.3E-19 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS09040 2c0c2390490032624e127a391acf67ab 151 Pfam PF13404 AsnC-type helix-turn-helix domain 2 43 3.3E-12 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS09040 2c0c2390490032624e127a391acf67ab 151 Pfam PF01037 Lrp/AsnC ligand binding domain 69 138 1.7E-12 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS16105 8bc44761cb23eb3bf318f4e66e31d74e 294 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 9 294 18.352 T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RD1_RS16105 8bc44761cb23eb3bf318f4e66e31d74e 294 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 1 290 3.1E-67 T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RD1_RS16105 8bc44761cb23eb3bf318f4e66e31d74e 294 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 151 163 - T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RD1_RS16105 8bc44761cb23eb3bf318f4e66e31d74e 294 PANTHER PTHR30589 1 292 9.5E-89 T 23-04-2016 RD1_RS16105 8bc44761cb23eb3bf318f4e66e31d74e 294 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 23 288 4.3E-73 T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RD1_RS16105 8bc44761cb23eb3bf318f4e66e31d74e 294 PANTHER PTHR30589:SF0 1 292 9.5E-89 T 23-04-2016 RD1_RS17320 a05e4a5724b40aa3c0db58be8e55aa80 395 PANTHER PTHR36577:SF1 1 395 6.6E-102 T 23-04-2016 RD1_RS17320 a05e4a5724b40aa3c0db58be8e55aa80 395 PANTHER PTHR36577 1 395 6.6E-102 T 23-04-2016 RD1_RS17320 a05e4a5724b40aa3c0db58be8e55aa80 395 Pfam PF04412 Protein of unknown function (DUF521) 1 380 2.5E-121 T 23-04-2016 IPR007506 Domain of unknown function DUF521 RD1_RS14810 d8a1a297537d5cc7f01ef83e40c099c2 147 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 3 140 28.907 T 23-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RD1_RS14810 d8a1a297537d5cc7f01ef83e40c099c2 147 Pfam PF03100 CcmE 6 129 2.3E-37 T 23-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RD1_RS14810 d8a1a297537d5cc7f01ef83e40c099c2 147 SUPERFAMILY SSF82093 31 134 5.62E-35 T 23-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RD1_RS14810 d8a1a297537d5cc7f01ef83e40c099c2 147 Gene3D G3DSA:2.40.50.140 29 124 6.3E-30 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS14810 d8a1a297537d5cc7f01ef83e40c099c2 147 PANTHER PTHR34128 3 140 3.7E-38 T 23-04-2016 RD1_RS14810 d8a1a297537d5cc7f01ef83e40c099c2 147 PANTHER PTHR34128:SF1 3 140 3.7E-38 T 23-04-2016 RD1_RS04695 c0ad6f7efc7a1f8744eedd6547c601df 613 Gene3D G3DSA:2.40.10.10 392 461 3.4E-7 T 23-04-2016 RD1_RS04695 c0ad6f7efc7a1f8744eedd6547c601df 613 Pfam PF13365 Trypsin-like peptidase domain 402 558 2.5E-18 T 23-04-2016 RD1_RS04695 c0ad6f7efc7a1f8744eedd6547c601df 613 SUPERFAMILY SSF50494 380 585 2.22E-29 T 23-04-2016 IPR009003 Peptidase S1, PA clan RD1_RS04695 c0ad6f7efc7a1f8744eedd6547c601df 613 Gene3D G3DSA:2.40.10.10 471 585 3.5E-16 T 23-04-2016 RD1_RS06000 bc2f9eeca4e47d6a348c59663752e031 269 PANTHER PTHR13696 1 263 1.9E-19 T 23-04-2016 RD1_RS06000 bc2f9eeca4e47d6a348c59663752e031 269 PANTHER PTHR13696:SF54 1 263 1.9E-19 T 23-04-2016 RD1_RS06000 bc2f9eeca4e47d6a348c59663752e031 269 Gene3D G3DSA:3.40.50.300 3 237 1.2E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06000 bc2f9eeca4e47d6a348c59663752e031 269 Pfam PF09140 ATPase MipZ 3 263 1.2E-117 T 23-04-2016 IPR015223 ATPase MipZ RD1_RS06000 bc2f9eeca4e47d6a348c59663752e031 269 SUPERFAMILY SSF52540 1 235 1.05E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09865 ce77f6613cc592547475f0fae1f97c1a 314 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 72 94 - T 23-04-2016 IPR030470 UbiA prenyltransferase conserved site RD1_RS09865 ce77f6613cc592547475f0fae1f97c1a 314 PANTHER PTHR11048 19 302 2.5E-68 T 23-04-2016 RD1_RS09865 ce77f6613cc592547475f0fae1f97c1a 314 Pfam PF01040 UbiA prenyltransferase family 35 279 3.4E-58 T 23-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RD1_RS09865 ce77f6613cc592547475f0fae1f97c1a 314 PANTHER PTHR11048:SF3 19 302 2.5E-68 T 23-04-2016 RD1_RS09865 ce77f6613cc592547475f0fae1f97c1a 314 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 18 305 18.893 T 23-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 RD1_RS09865 ce77f6613cc592547475f0fae1f97c1a 314 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 21 303 1.9E-94 T 23-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 RD1_RS10145 2b24fbadd2ab6103af2d256b14769b8e 277 SUPERFAMILY SSF52402 156 276 8.29E-18 T 23-04-2016 RD1_RS10145 2b24fbadd2ab6103af2d256b14769b8e 277 Pfam PF00582 Universal stress protein family 159 275 5.0E-8 T 23-04-2016 IPR006016 UspA GO:0006950 RD1_RS10145 2b24fbadd2ab6103af2d256b14769b8e 277 PRINTS PR01438 Universal stress protein signature 155 173 3.4E-5 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS10145 2b24fbadd2ab6103af2d256b14769b8e 277 PRINTS PR01438 Universal stress protein signature 255 277 3.4E-5 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS10145 2b24fbadd2ab6103af2d256b14769b8e 277 PRINTS PR01438 Universal stress protein signature 237 249 3.4E-5 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS10145 2b24fbadd2ab6103af2d256b14769b8e 277 SUPERFAMILY SSF52402 1 146 4.19E-12 T 23-04-2016 RD1_RS10145 2b24fbadd2ab6103af2d256b14769b8e 277 Gene3D G3DSA:3.40.50.620 141 277 7.0E-14 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS10145 2b24fbadd2ab6103af2d256b14769b8e 277 Gene3D G3DSA:3.40.50.620 1 119 2.1E-8 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS02135 691fbcd1561713b801f2370ecc69a71b 207 Gene3D G3DSA:3.40.30.10 11 205 2.9E-49 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS02135 691fbcd1561713b801f2370ecc69a71b 207 SUPERFAMILY SSF52833 47 206 5.57E-43 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS02135 691fbcd1561713b801f2370ecc69a71b 207 Pfam PF02630 SCO1/SenC 46 185 1.4E-37 T 23-04-2016 IPR003782 Copper chaperone SCO1/SenC RD1_RS02135 691fbcd1561713b801f2370ecc69a71b 207 PANTHER PTHR12151 9 201 1.2E-55 T 23-04-2016 IPR003782 Copper chaperone SCO1/SenC RD1_RS00150 3b14e565f15093daa93032a177740266 932 SUPERFAMILY SSF52540 523 831 4.19E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00150 3b14e565f15093daa93032a177740266 932 SMART SM00382 576 781 9.0E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS00150 3b14e565f15093daa93032a177740266 932 PANTHER PTHR22683 368 931 3.1E-236 T 23-04-2016 RD1_RS00150 3b14e565f15093daa93032a177740266 932 Pfam PF01580 FtsK/SpoIIIE family 541 760 2.4E-66 T 23-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RD1_RS00150 3b14e565f15093daa93032a177740266 932 Pfam PF09397 Ftsk gamma domain 869 928 4.5E-26 T 23-04-2016 IPR018541 FtsK gamma domain RD1_RS00150 3b14e565f15093daa93032a177740266 932 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 21 186 1.7E-34 T 23-04-2016 IPR025199 DNA translocase FtsK, 4TM region RD1_RS00150 3b14e565f15093daa93032a177740266 932 SMART SM00843 866 931 1.6E-37 T 23-04-2016 IPR018541 FtsK gamma domain RD1_RS00150 3b14e565f15093daa93032a177740266 932 PANTHER PTHR22683:SF41 368 931 3.1E-236 T 23-04-2016 RD1_RS00150 3b14e565f15093daa93032a177740266 932 Gene3D G3DSA:3.40.50.300 713 825 3.1E-95 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00150 3b14e565f15093daa93032a177740266 932 Gene3D G3DSA:3.40.50.300 518 680 3.1E-95 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00150 3b14e565f15093daa93032a177740266 932 SUPERFAMILY SSF46785 866 930 5.24E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS13250 a6c1f3b2f69b2a1e67a718b17dfd0908 310 Pfam PF00294 pfkB family carbohydrate kinase 2 303 7.9E-46 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RD1_RS13250 a6c1f3b2f69b2a1e67a718b17dfd0908 310 Gene3D G3DSA:3.40.1190.20 2 308 3.0E-64 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS13250 a6c1f3b2f69b2a1e67a718b17dfd0908 310 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 245 258 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RD1_RS13250 a6c1f3b2f69b2a1e67a718b17dfd0908 310 PANTHER PTHR10584:SF161 1 300 2.0E-58 T 23-04-2016 RD1_RS13250 a6c1f3b2f69b2a1e67a718b17dfd0908 310 PANTHER PTHR10584 1 300 2.0E-58 T 23-04-2016 RD1_RS13250 a6c1f3b2f69b2a1e67a718b17dfd0908 310 SUPERFAMILY SSF53613 2 304 2.03E-62 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS04830 3e867bcd62aeddcb1c55c05153498aa7 348 Pfam PF00107 Zinc-binding dehydrogenase 181 302 4.8E-22 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RD1_RS04830 3e867bcd62aeddcb1c55c05153498aa7 348 PANTHER PTHR11695 14 346 1.3E-91 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS04830 3e867bcd62aeddcb1c55c05153498aa7 348 Gene3D G3DSA:3.40.50.720 173 291 5.9E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS04830 3e867bcd62aeddcb1c55c05153498aa7 348 SMART SM00829 12 343 8.1E-4 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RD1_RS04830 3e867bcd62aeddcb1c55c05153498aa7 348 PANTHER PTHR11695:SF501 14 346 1.3E-91 T 23-04-2016 RD1_RS04830 3e867bcd62aeddcb1c55c05153498aa7 348 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 RD1_RS04830 3e867bcd62aeddcb1c55c05153498aa7 348 SUPERFAMILY SSF51735 146 311 3.02E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS04830 3e867bcd62aeddcb1c55c05153498aa7 348 SUPERFAMILY SSF50129 6 180 3.5E-46 T 23-04-2016 IPR011032 GroES-like RD1_RS04830 3e867bcd62aeddcb1c55c05153498aa7 348 Gene3D G3DSA:3.90.180.10 7 172 2.0E-47 T 23-04-2016 IPR011032 GroES-like RD1_RS04830 3e867bcd62aeddcb1c55c05153498aa7 348 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 141 2.3E-29 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RD1_RS01695 fa247588f1fef9d86f964fcde488fe46 309 PIRSF PIRSF018455 4 309 2.8E-107 T 23-04-2016 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 RD1_RS01695 fa247588f1fef9d86f964fcde488fe46 309 Gene3D G3DSA:3.30.1380.10 49 308 1.1E-101 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RD1_RS01695 fa247588f1fef9d86f964fcde488fe46 309 SUPERFAMILY SSF55166 49 308 6.59E-97 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RD1_RS01695 fa247588f1fef9d86f964fcde488fe46 309 Pfam PF03411 Penicillin-insensitive murein endopeptidase 65 307 1.4E-100 T 23-04-2016 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 RD1_RS00780 19d50c1113d1e5e9e6a4e5fe863431c3 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 277 5.1E-20 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00780 19d50c1113d1e5e9e6a4e5fe863431c3 291 PANTHER PTHR30193 1 290 1.2E-128 T 23-04-2016 RD1_RS00780 19d50c1113d1e5e9e6a4e5fe863431c3 291 SUPERFAMILY SSF161098 3 286 3.01E-58 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00780 19d50c1113d1e5e9e6a4e5fe863431c3 291 PANTHER PTHR30193:SF5 1 290 1.2E-128 T 23-04-2016 RD1_RS00780 19d50c1113d1e5e9e6a4e5fe863431c3 291 Gene3D G3DSA:1.10.3720.10 4 281 1.2E-56 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS07310 0f5c16c174231dae9afc291f4337db32 328 SUPERFAMILY SSF53850 28 314 1.09E-51 T 23-04-2016 RD1_RS07310 0f5c16c174231dae9afc291f4337db32 328 Gene3D G3DSA:3.40.190.10 121 247 1.7E-15 T 23-04-2016 RD1_RS07310 0f5c16c174231dae9afc291f4337db32 328 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 6 314 1.6E-38 T 23-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RD1_RS07310 0f5c16c174231dae9afc291f4337db32 328 PANTHER PTHR30024 29 314 1.7E-20 T 23-04-2016 RD1_RS07310 0f5c16c174231dae9afc291f4337db32 328 Gene3D G3DSA:3.40.190.10 29 109 7.4E-32 T 23-04-2016 RD1_RS07310 0f5c16c174231dae9afc291f4337db32 328 Gene3D G3DSA:3.40.190.10 248 314 7.4E-32 T 23-04-2016 RD1_RS07310 0f5c16c174231dae9afc291f4337db32 328 PANTHER PTHR30024:SF13 29 314 1.7E-20 T 23-04-2016 RD1_RS07310 0f5c16c174231dae9afc291f4337db32 328 Pfam PF16868 NMT1-like family 34 314 3.3E-65 T 23-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RD1_RS03155 ac191e303aa9611ac764438601d7ed31 599 SUPERFAMILY SSF143975 11 381 2.62E-113 T 23-04-2016 RD1_RS03155 ac191e303aa9611ac764438601d7ed31 599 PANTHER PTHR21000 10 597 0.0 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS03155 ac191e303aa9611ac764438601d7ed31 599 PANTHER PTHR21000:SF1 10 597 0.0 T 23-04-2016 RD1_RS03155 ac191e303aa9611ac764438601d7ed31 599 SUPERFAMILY SSF52016 384 581 5.73E-44 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RD1_RS03155 ac191e303aa9611ac764438601d7ed31 599 Pfam PF00920 Dehydratase family 46 577 1.3E-148 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS03155 ac191e303aa9611ac764438601d7ed31 599 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 129 139 - T 23-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS12900 2922a5900cfbbb9539c2b6b35310c34c 362 PIRSF PIRSF039026 1 357 1.1E-136 T 23-04-2016 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like RD1_RS12900 2922a5900cfbbb9539c2b6b35310c34c 362 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 40 319 1.3E-47 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS12900 2922a5900cfbbb9539c2b6b35310c34c 362 PANTHER PTHR33376 1 342 9.5E-97 T 23-04-2016 RD1_RS12900 2922a5900cfbbb9539c2b6b35310c34c 362 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 2 21 4.1E-4 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RD1_RS12900 2922a5900cfbbb9539c2b6b35310c34c 362 PANTHER PTHR33376:SF5 1 342 9.5E-97 T 23-04-2016 RD1_RS08445 5c5afa4ec12273b077713bb1d122f259 151 Gene3D G3DSA:3.30.70.920 55 139 2.0E-24 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS08445 5c5afa4ec12273b077713bb1d122f259 151 SMART SM00344 2 111 5.7E-24 T 23-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RD1_RS08445 5c5afa4ec12273b077713bb1d122f259 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 4.2E-6 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS08445 5c5afa4ec12273b077713bb1d122f259 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 4.2E-6 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS08445 5c5afa4ec12273b077713bb1d122f259 151 SUPERFAMILY SSF54909 63 150 4.56E-18 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS08445 5c5afa4ec12273b077713bb1d122f259 151 Gene3D G3DSA:1.10.10.10 3 54 1.5E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS08445 5c5afa4ec12273b077713bb1d122f259 151 Pfam PF13404 AsnC-type helix-turn-helix domain 2 43 5.6E-11 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS08445 5c5afa4ec12273b077713bb1d122f259 151 PANTHER PTHR30154:SF0 2 151 2.5E-41 T 23-04-2016 RD1_RS08445 5c5afa4ec12273b077713bb1d122f259 151 PANTHER PTHR30154 2 151 2.5E-41 T 23-04-2016 RD1_RS08445 5c5afa4ec12273b077713bb1d122f259 151 Pfam PF01037 Lrp/AsnC ligand binding domain 68 141 3.8E-18 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RD1_RS08445 5c5afa4ec12273b077713bb1d122f259 151 SUPERFAMILY SSF46785 1 61 6.16E-13 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS14995 15afec68780c3b7f75f80276cf22e21b 257 PANTHER PTHR34265 1 255 9.4E-61 T 23-04-2016 RD1_RS14995 15afec68780c3b7f75f80276cf22e21b 257 SUPERFAMILY SSF53067 1 122 1.17E-31 T 23-04-2016 RD1_RS14995 15afec68780c3b7f75f80276cf22e21b 257 Gene3D G3DSA:3.30.420.40 95 256 1.4E-50 T 23-04-2016 RD1_RS14995 15afec68780c3b7f75f80276cf22e21b 257 SUPERFAMILY SSF53067 124 253 3.76E-39 T 23-04-2016 RD1_RS14995 15afec68780c3b7f75f80276cf22e21b 257 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 254 33.624 T 23-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RD1_RS14995 15afec68780c3b7f75f80276cf22e21b 257 Pfam PF03309 Type III pantothenate kinase 2 205 1.7E-66 T 23-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RD1_RS14995 15afec68780c3b7f75f80276cf22e21b 257 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 2 249 6.2E-65 T 23-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RD1_RS03490 5e65524e9dd37d416f43bc9b85a04e30 504 PANTHER PTHR32063 1 502 1.1E-134 T 23-04-2016 RD1_RS03490 5e65524e9dd37d416f43bc9b85a04e30 504 Gene3D G3DSA:3.30.2090.10 399 481 4.6E-13 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS03490 5e65524e9dd37d416f43bc9b85a04e30 504 SUPERFAMILY SSF82866 1 180 1.83E-35 T 23-04-2016 RD1_RS03490 5e65524e9dd37d416f43bc9b85a04e30 504 SUPERFAMILY SSF82714 399 481 3.27E-14 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RD1_RS03490 5e65524e9dd37d416f43bc9b85a04e30 504 PANTHER PTHR32063:SF18 1 502 1.1E-134 T 23-04-2016 RD1_RS03490 5e65524e9dd37d416f43bc9b85a04e30 504 Pfam PF00873 AcrB/AcrD/AcrF family 10 502 2.5E-73 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS03490 5e65524e9dd37d416f43bc9b85a04e30 504 Gene3D G3DSA:1.20.1640.10 5 187 2.8E-42 T 23-04-2016 RD1_RS03490 5e65524e9dd37d416f43bc9b85a04e30 504 PRINTS PR00702 Acriflavin resistance protein family signature 127 150 1.9E-21 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS03490 5e65524e9dd37d416f43bc9b85a04e30 504 PRINTS PR00702 Acriflavin resistance protein family signature 74 98 1.9E-21 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS03490 5e65524e9dd37d416f43bc9b85a04e30 504 PRINTS PR00702 Acriflavin resistance protein family signature 20 43 1.9E-21 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS03490 5e65524e9dd37d416f43bc9b85a04e30 504 PRINTS PR00702 Acriflavin resistance protein family signature 228 245 1.9E-21 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS03490 5e65524e9dd37d416f43bc9b85a04e30 504 PRINTS PR00702 Acriflavin resistance protein family signature 152 175 1.9E-21 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RD1_RS01765 ae4110f503fe27b6135a503e331a2424 199 SUPERFAMILY SSF51197 7 198 3.85E-50 T 23-04-2016 RD1_RS01765 ae4110f503fe27b6135a503e331a2424 199 Gene3D G3DSA:2.60.120.590 7 198 1.2E-47 T 23-04-2016 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like RD1_RS01765 ae4110f503fe27b6135a503e331a2424 199 PANTHER PTHR16557 38 198 2.4E-39 T 23-04-2016 IPR004574 Alkylated DNA repair protein AlkB GO:0006281|GO:0055114 RD1_RS01765 ae4110f503fe27b6135a503e331a2424 199 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 8 196 1.4E-50 T 23-04-2016 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like RD1_RS13145 007f54d660e66371fe5530b0031a9298 120 PANTHER PTHR11803:SF19 4 116 1.9E-35 T 23-04-2016 RD1_RS13145 007f54d660e66371fe5530b0031a9298 120 SUPERFAMILY SSF55298 1 119 1.18E-30 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RD1_RS13145 007f54d660e66371fe5530b0031a9298 120 Pfam PF01042 Endoribonuclease L-PSP 12 117 2.4E-17 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family RD1_RS13145 007f54d660e66371fe5530b0031a9298 120 Gene3D G3DSA:3.30.1330.40 2 119 2.4E-27 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RD1_RS13145 007f54d660e66371fe5530b0031a9298 120 PANTHER PTHR11803 4 116 1.9E-35 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family RD1_RS07505 c94c4517faa0d178bfdcb66274e8affe 221 Gene3D G3DSA:3.40.50.410 21 207 4.2E-7 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS07505 c94c4517faa0d178bfdcb66274e8affe 221 SUPERFAMILY SSF53300 20 212 6.16E-22 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS07505 c94c4517faa0d178bfdcb66274e8affe 221 Pfam PF06707 Protein of unknown function (DUF1194) 20 215 7.8E-68 T 23-04-2016 IPR010607 Protein of unknown function DUF1194 RD1_RS12125 1af09cef4d6cec98bdea13117593e78e 456 Pfam PF01474 Class-II DAHP synthetase family 4 440 1.5E-197 T 23-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 RD1_RS12125 1af09cef4d6cec98bdea13117593e78e 456 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 4 446 4.0E-209 T 23-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 RD1_RS12125 1af09cef4d6cec98bdea13117593e78e 456 SUPERFAMILY SSF51569 2 443 5.13E-192 T 23-04-2016 RD1_RS12125 1af09cef4d6cec98bdea13117593e78e 456 PANTHER PTHR21337 2 447 3.7E-281 T 23-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 RD1_RS14325 4769cf9beb124207b757b8bcfd14df98 155 SUPERFAMILY SSF102400 1 140 5.62E-35 T 23-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RD1_RS14325 4769cf9beb124207b757b8bcfd14df98 155 Gene3D G3DSA:3.40.50.10110 1 140 1.3E-34 T 23-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RD1_RS14325 4769cf9beb124207b757b8bcfd14df98 155 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 135 3.3E-31 T 23-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RD1_RS18240 d1502393951360c2d20988e0e478ca8a 630 Gene3D G3DSA:3.30.300.30 496 613 2.5E-20 T 23-04-2016 RD1_RS18240 d1502393951360c2d20988e0e478ca8a 630 Gene3D G3DSA:3.40.50.980 58 240 6.3E-35 T 23-04-2016 RD1_RS18240 d1502393951360c2d20988e0e478ca8a 630 PANTHER PTHR24095 1 623 0.0 T 23-04-2016 RD1_RS18240 d1502393951360c2d20988e0e478ca8a 630 PANTHER PTHR24095:SF172 1 623 0.0 T 23-04-2016 RD1_RS18240 d1502393951360c2d20988e0e478ca8a 630 Gene3D G3DSA:3.40.50.980 241 414 2.6E-29 T 23-04-2016 RD1_RS18240 d1502393951360c2d20988e0e478ca8a 630 SUPERFAMILY SSF56801 3 622 1.18E-151 T 23-04-2016 RD1_RS18240 d1502393951360c2d20988e0e478ca8a 630 ProSitePatterns PS00455 Putative AMP-binding domain signature. 236 247 - T 23-04-2016 IPR020845 AMP-binding, conserved site RD1_RS18240 d1502393951360c2d20988e0e478ca8a 630 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 3 57 6.0E-16 T 23-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 RD1_RS18240 d1502393951360c2d20988e0e478ca8a 630 Pfam PF00501 AMP-binding enzyme 65 500 1.6E-81 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RD1_RS18240 d1502393951360c2d20988e0e478ca8a 630 Gene3D G3DSA:2.30.38.10 417 493 1.6E-10 T 23-04-2016 RD1_RS18240 d1502393951360c2d20988e0e478ca8a 630 Pfam PF13193 AMP-binding enzyme C-terminal domain 510 588 9.4E-22 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RD1_RS10570 df1b121fcc3dd685b596222b05fc8b71 407 PANTHER PTHR11601:SF22 8 281 1.6E-98 T 23-04-2016 RD1_RS10570 df1b121fcc3dd685b596222b05fc8b71 407 PANTHER PTHR11601:SF22 299 407 1.6E-98 T 23-04-2016 RD1_RS10570 df1b121fcc3dd685b596222b05fc8b71 407 Pfam PF00266 Aminotransferase class-V 302 399 4.1E-5 T 23-04-2016 IPR000192 Aminotransferase class V domain RD1_RS10570 df1b121fcc3dd685b596222b05fc8b71 407 Pfam PF00266 Aminotransferase class-V 25 227 2.0E-43 T 23-04-2016 IPR000192 Aminotransferase class V domain RD1_RS10570 df1b121fcc3dd685b596222b05fc8b71 407 Gene3D G3DSA:3.40.640.10 36 267 2.1E-54 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS10570 df1b121fcc3dd685b596222b05fc8b71 407 Gene3D G3DSA:3.90.1150.10 268 406 1.8E-19 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS10570 df1b121fcc3dd685b596222b05fc8b71 407 PANTHER PTHR11601 8 281 1.6E-98 T 23-04-2016 RD1_RS10570 df1b121fcc3dd685b596222b05fc8b71 407 PANTHER PTHR11601 299 407 1.6E-98 T 23-04-2016 RD1_RS10570 df1b121fcc3dd685b596222b05fc8b71 407 SUPERFAMILY SSF53383 4 407 1.69E-79 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS09990 772427959045c5d16ed924116ce6c230 235 Gene3D G3DSA:3.40.50.300 5 231 6.9E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09990 772427959045c5d16ed924116ce6c230 235 SMART SM00382 30 207 1.2E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS09990 772427959045c5d16ed924116ce6c230 235 Pfam PF00005 ABC transporter 21 164 2.9E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS09990 772427959045c5d16ed924116ce6c230 235 SUPERFAMILY SSF52540 5 224 4.57E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09990 772427959045c5d16ed924116ce6c230 235 PANTHER PTHR24220:SF404 7 215 5.3E-107 T 23-04-2016 RD1_RS09990 772427959045c5d16ed924116ce6c230 235 PANTHER PTHR24220 7 215 5.3E-107 T 23-04-2016 RD1_RS09990 772427959045c5d16ed924116ce6c230 235 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 6 235 6.2E-102 T 23-04-2016 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE RD1_RS05845 90676478726a763619af1909f451508a 451 Pfam PF04055 Radical SAM superfamily 56 226 1.2E-12 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RD1_RS05845 90676478726a763619af1909f451508a 451 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 7 440 2.1E-113 T 23-04-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 RD1_RS05845 90676478726a763619af1909f451508a 451 PANTHER PTHR13932 13 448 6.7E-148 T 23-04-2016 RD1_RS05845 90676478726a763619af1909f451508a 451 PIRSF PIRSF000167 3 451 6.8E-152 T 23-04-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 RD1_RS05845 90676478726a763619af1909f451508a 451 SUPERFAMILY SSF102114 9 440 3.73E-110 T 23-04-2016 RD1_RS05845 90676478726a763619af1909f451508a 451 SMART SM00729 50 271 1.1E-42 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RD1_RS05845 90676478726a763619af1909f451508a 451 Gene3D G3DSA:3.80.30.20 50 247 6.3E-21 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RD1_RS05845 90676478726a763619af1909f451508a 451 PANTHER PTHR13932:SF6 13 448 6.7E-148 T 23-04-2016 RD1_RS10900 41fac4ae616a7234fd08cdcb7ef81a9b 294 PANTHER PTHR30579:SF0 6 293 1.0E-55 T 23-04-2016 RD1_RS10900 41fac4ae616a7234fd08cdcb7ef81a9b 294 PANTHER PTHR30579 6 293 1.0E-55 T 23-04-2016 RD1_RS10900 41fac4ae616a7234fd08cdcb7ef81a9b 294 Gene3D G3DSA:3.40.190.10 190 241 3.7E-7 T 23-04-2016 RD1_RS10900 41fac4ae616a7234fd08cdcb7ef81a9b 294 SUPERFAMILY SSF53850 95 285 1.45E-20 T 23-04-2016 RD1_RS10900 41fac4ae616a7234fd08cdcb7ef81a9b 294 Gene3D G3DSA:1.10.10.10 8 89 1.4E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS10900 41fac4ae616a7234fd08cdcb7ef81a9b 294 Pfam PF03466 LysR substrate binding domain 95 245 3.7E-17 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS10900 41fac4ae616a7234fd08cdcb7ef81a9b 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 1.6E-19 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS10900 41fac4ae616a7234fd08cdcb7ef81a9b 294 SUPERFAMILY SSF46785 8 88 1.15E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS10900 41fac4ae616a7234fd08cdcb7ef81a9b 294 Gene3D G3DSA:3.40.190.10 94 189 3.9E-12 T 23-04-2016 RD1_RS10900 41fac4ae616a7234fd08cdcb7ef81a9b 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.2E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS10900 41fac4ae616a7234fd08cdcb7ef81a9b 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.2E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS10900 41fac4ae616a7234fd08cdcb7ef81a9b 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.2E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS08355 749e3aa36890ba97f898c43814b10285 337 SMART SM00342 251 333 9.7E-26 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS08355 749e3aa36890ba97f898c43814b10285 337 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 302 317 3.4E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RD1_RS08355 749e3aa36890ba97f898c43814b10285 337 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 317 333 3.4E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RD1_RS08355 749e3aa36890ba97f898c43814b10285 337 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 40 204 1.4E-20 T 23-04-2016 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RD1_RS08355 749e3aa36890ba97f898c43814b10285 337 PANTHER PTHR11019 237 336 9.1E-20 T 23-04-2016 RD1_RS08355 749e3aa36890ba97f898c43814b10285 337 SUPERFAMILY SSF46689 286 334 1.52E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS08355 749e3aa36890ba97f898c43814b10285 337 Pfam PF12833 Helix-turn-helix domain 257 334 2.7E-19 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS08355 749e3aa36890ba97f898c43814b10285 337 Gene3D G3DSA:1.10.10.60 286 335 1.3E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS08355 749e3aa36890ba97f898c43814b10285 337 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 287 329 - T 23-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RD1_RS17975 8c5459114c3aa1e61b15336328a41b3a 263 SUPERFAMILY SSF51735 7 257 9.91E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17975 8c5459114c3aa1e61b15336328a41b3a 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 253 4.1E-83 T 23-04-2016 RD1_RS17975 8c5459114c3aa1e61b15336328a41b3a 263 PANTHER PTHR24322:SF317 160 192 2.7E-56 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RD1_RS17975 8c5459114c3aa1e61b15336328a41b3a 263 PANTHER PTHR24322:SF317 12 144 2.7E-56 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RD1_RS17975 8c5459114c3aa1e61b15336328a41b3a 263 Gene3D G3DSA:3.40.50.720 7 202 1.6E-66 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17975 8c5459114c3aa1e61b15336328a41b3a 263 PANTHER PTHR24322 160 192 2.7E-56 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17975 8c5459114c3aa1e61b15336328a41b3a 263 PANTHER PTHR24322 12 144 2.7E-56 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17975 8c5459114c3aa1e61b15336328a41b3a 263 PIRSF PIRSF000094 2 261 5.3E-103 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RD1_RS13365 b0644d9e9457615a27d0430bd07753fc 651 PANTHER PTHR24960 495 628 3.3E-90 T 23-04-2016 RD1_RS13365 b0644d9e9457615a27d0430bd07753fc 651 PANTHER PTHR24960 72 340 3.3E-90 T 23-04-2016 RD1_RS13365 b0644d9e9457615a27d0430bd07753fc 651 PANTHER PTHR24960:SF43 495 628 3.3E-90 T 23-04-2016 RD1_RS13365 b0644d9e9457615a27d0430bd07753fc 651 PANTHER PTHR24960:SF43 72 340 3.3E-90 T 23-04-2016 RD1_RS13365 b0644d9e9457615a27d0430bd07753fc 651 Pfam PF13187 4Fe-4S dicluster domain 502 549 1.5E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS13365 b0644d9e9457615a27d0430bd07753fc 651 Pfam PF12838 4Fe-4S dicluster domain 278 319 1.4E-6 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS13365 b0644d9e9457615a27d0430bd07753fc 651 Gene3D G3DSA:1.10.1060.10 464 507 1.5E-8 T 23-04-2016 RD1_RS13365 b0644d9e9457615a27d0430bd07753fc 651 SUPERFAMILY SSF54862 498 602 1.36E-37 T 23-04-2016 RD1_RS13365 b0644d9e9457615a27d0430bd07753fc 651 SUPERFAMILY SSF54862 252 326 1.36E-37 T 23-04-2016 RD1_RS13365 b0644d9e9457615a27d0430bd07753fc 651 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 503 514 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS13365 b0644d9e9457615a27d0430bd07753fc 651 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 534 545 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS13365 b0644d9e9457615a27d0430bd07753fc 651 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 305 316 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS13365 b0644d9e9457615a27d0430bd07753fc 651 Gene3D G3DSA:3.30.70.20 508 536 4.9E-12 T 23-04-2016 RD1_RS13365 b0644d9e9457615a27d0430bd07753fc 651 Gene3D G3DSA:3.30.70.20 537 580 1.1E-7 T 23-04-2016 RD1_RS13365 b0644d9e9457615a27d0430bd07753fc 651 Gene3D G3DSA:3.30.70.20 278 325 1.3E-14 T 23-04-2016 RD1_RS08620 364e281cf8f133d0a0552a7825d4c210 297 SUPERFAMILY SSF103481 193 288 1.24E-7 T 23-04-2016 RD1_RS08620 364e281cf8f133d0a0552a7825d4c210 297 PANTHER PTHR22911 5 297 3.9E-45 T 23-04-2016 RD1_RS08620 364e281cf8f133d0a0552a7825d4c210 297 SUPERFAMILY SSF103481 43 145 4.84E-16 T 23-04-2016 RD1_RS08620 364e281cf8f133d0a0552a7825d4c210 297 Pfam PF00892 EamA-like transporter family 13 142 1.5E-16 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS04445 e76191eaedf298cbc3b14a5bda002294 214 Gene3D G3DSA:1.10.340.30 27 126 2.6E-31 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RD1_RS04445 e76191eaedf298cbc3b14a5bda002294 214 Gene3D G3DSA:1.10.1670.10 127 212 5.7E-32 T 23-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RD1_RS04445 e76191eaedf298cbc3b14a5bda002294 214 SMART SM00525 190 210 1.1E-4 T 23-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 RD1_RS04445 e76191eaedf298cbc3b14a5bda002294 214 PANTHER PTHR10359:SF18 4 214 8.7E-81 T 23-04-2016 RD1_RS04445 e76191eaedf298cbc3b14a5bda002294 214 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 38 171 3.5E-15 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RD1_RS04445 e76191eaedf298cbc3b14a5bda002294 214 PANTHER PTHR10359 4 214 8.7E-81 T 23-04-2016 RD1_RS04445 e76191eaedf298cbc3b14a5bda002294 214 Hamap MF_00942 Endonuclease III [nth]. 1 213 34.124 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RD1_RS04445 e76191eaedf298cbc3b14a5bda002294 214 PIRSF PIRSF001435 4 214 2.4E-44 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RD1_RS04445 e76191eaedf298cbc3b14a5bda002294 214 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 191 207 - T 23-04-2016 IPR004035 Endonuclease III, iron-sulphur binding site RD1_RS04445 e76191eaedf298cbc3b14a5bda002294 214 Pfam PF00633 Helix-hairpin-helix motif 104 131 1.0E-8 T 23-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 RD1_RS04445 e76191eaedf298cbc3b14a5bda002294 214 SUPERFAMILY SSF48150 8 211 2.83E-68 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RD1_RS04445 e76191eaedf298cbc3b14a5bda002294 214 TIGRFAM TIGR01083 nth: endonuclease III 9 198 9.9E-76 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RD1_RS04445 e76191eaedf298cbc3b14a5bda002294 214 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 191 207 5.4E-6 T 23-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 RD1_RS04445 e76191eaedf298cbc3b14a5bda002294 214 SMART SM00478 42 189 5.2E-49 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RD1_RS00025 11964605549b14c0c2f69bf9e5e54ac8 355 Pfam PF11927 Protein of unknown function (DUF3445) 57 292 6.9E-47 T 23-04-2016 IPR021848 Protein of unknown function DUF3445 RD1_RS15590 a0faeed162e7dea68dfa7f4fe8f02191 310 PANTHER PTHR30537 1 307 4.4E-93 T 23-04-2016 RD1_RS15590 a0faeed162e7dea68dfa7f4fe8f02191 310 Gene3D G3DSA:3.40.190.10 95 177 2.6E-27 T 23-04-2016 RD1_RS15590 a0faeed162e7dea68dfa7f4fe8f02191 310 Pfam PF03466 LysR substrate binding domain 92 293 5.9E-33 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS15590 a0faeed162e7dea68dfa7f4fe8f02191 310 SUPERFAMILY SSF46785 4 84 1.24E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS15590 a0faeed162e7dea68dfa7f4fe8f02191 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 9.8E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS15590 a0faeed162e7dea68dfa7f4fe8f02191 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 9.8E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS15590 a0faeed162e7dea68dfa7f4fe8f02191 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 9.8E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS15590 a0faeed162e7dea68dfa7f4fe8f02191 310 PANTHER PTHR30537:SF26 1 307 4.4E-93 T 23-04-2016 RD1_RS15590 a0faeed162e7dea68dfa7f4fe8f02191 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 7.2E-19 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS15590 a0faeed162e7dea68dfa7f4fe8f02191 310 Gene3D G3DSA:3.40.190.10 178 264 1.1E-18 T 23-04-2016 RD1_RS15590 a0faeed162e7dea68dfa7f4fe8f02191 310 Gene3D G3DSA:1.10.10.10 2 83 7.6E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS15590 a0faeed162e7dea68dfa7f4fe8f02191 310 SUPERFAMILY SSF53850 93 297 2.17E-34 T 23-04-2016 RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 PANTHER PTHR24322:SF356 159 190 1.7E-56 T 23-04-2016 RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 PANTHER PTHR24322:SF356 10 143 1.7E-56 T 23-04-2016 RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 6.13E-26 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 6.13E-26 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 6.13E-26 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 6.13E-26 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.13E-26 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 6.13E-26 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 Pfam PF00106 short chain dehydrogenase 7 203 2.4E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 Gene3D G3DSA:3.40.50.720 2 249 7.8E-70 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 SUPERFAMILY SSF51735 5 248 5.72E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 PANTHER PTHR24322 159 190 1.7E-56 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 PANTHER PTHR24322 10 143 1.7E-56 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 2.64E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 2.64E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS14470 a9e35ca8e8b41824c98698f677353a0d 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 2.64E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS10940 77500b93d3410ce9bf06ebb30ca40a9e 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 39 321 1.8E-42 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS10940 77500b93d3410ce9bf06ebb30ca40a9e 336 PANTHER PTHR32196:SF21 4 331 9.1E-74 T 23-04-2016 RD1_RS10940 77500b93d3410ce9bf06ebb30ca40a9e 336 PANTHER PTHR32196 4 331 9.1E-74 T 23-04-2016 RD1_RS07720 82120b305afa6f4a64caa296282e9cf7 406 PANTHER PTHR38592 29 401 3.3E-46 T 23-04-2016 RD1_RS07720 82120b305afa6f4a64caa296282e9cf7 406 PIRSF PIRSF028704 2 406 1.5E-72 T 23-04-2016 IPR014550 Uncharacterised conserved protein UCP028704, OpgC RD1_RS07720 82120b305afa6f4a64caa296282e9cf7 406 Pfam PF10129 OpgC protein 29 396 3.3E-108 T 23-04-2016 IPR014550 Uncharacterised conserved protein UCP028704, OpgC RD1_RS14830 1380a633d1380c4fe7fda976da611933 1132 Gene3D G3DSA:3.40.920.10 707 904 5.4E-17 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RD1_RS14830 1380a633d1380c4fe7fda976da611933 1132 Gene3D G3DSA:3.40.50.970 483 607 5.3E-6 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS14830 1380a633d1380c4fe7fda976da611933 1132 SUPERFAMILY SSF53323 706 906 3.66E-26 T 23-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RD1_RS14830 1380a633d1380c4fe7fda976da611933 1132 SUPERFAMILY SSF52518 428 612 1.71E-15 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS14830 1380a633d1380c4fe7fda976da611933 1132 PANTHER PTHR18968 405 744 4.6E-160 T 23-04-2016 RD1_RS14830 1380a633d1380c4fe7fda976da611933 1132 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 449 553 3.7E-8 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RD1_RS14830 1380a633d1380c4fe7fda976da611933 1132 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 716 902 3.7E-21 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RD1_RS14830 1380a633d1380c4fe7fda976da611933 1132 SUPERFAMILY SSF52518 18 212 1.77E-15 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS14830 1380a633d1380c4fe7fda976da611933 1132 PANTHER PTHR18968:SF134 405 744 4.6E-160 T 23-04-2016 RD1_RS03480 91944cc72d157d166cef2b254683503a 333 SUPERFAMILY SSF111369 51 214 1.24E-17 T 23-04-2016 RD1_RS03480 91944cc72d157d166cef2b254683503a 333 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 58 271 3.4E-13 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RD1_RS03480 91944cc72d157d166cef2b254683503a 333 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 34 320 1.2E-53 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RD1_RS03480 91944cc72d157d166cef2b254683503a 333 Gene3D G3DSA:2.40.50.100 64 91 1.8E-13 T 23-04-2016 RD1_RS03480 91944cc72d157d166cef2b254683503a 333 Gene3D G3DSA:2.40.50.100 166 197 1.8E-13 T 23-04-2016 RD1_RS03480 91944cc72d157d166cef2b254683503a 333 PANTHER PTHR30469 1 320 8.0E-45 T 23-04-2016 RD1_RS11425 3625f7acde7199938e1e2d924b647e70 278 Pfam PF13020 Domain of unknown function (DUF3883) 160 255 2.7E-22 T 23-04-2016 IPR024975 Domain of unknown function DUF3883 RD1_RS11200 6b356ff3c11589bb4c839f65423b19fb 232 Gene3D G3DSA:2.60.120.10 10 144 2.4E-19 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS11200 6b356ff3c11589bb4c839f65423b19fb 232 PANTHER PTHR24567 9 221 4.0E-25 T 23-04-2016 RD1_RS11200 6b356ff3c11589bb4c839f65423b19fb 232 Pfam PF00027 Cyclic nucleotide-binding domain 33 117 1.2E-12 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS11200 6b356ff3c11589bb4c839f65423b19fb 232 Pfam PF13545 Crp-like helix-turn-helix domain 151 215 5.0E-14 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RD1_RS11200 6b356ff3c11589bb4c839f65423b19fb 232 SUPERFAMILY SSF46785 151 221 1.39E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11200 6b356ff3c11589bb4c839f65423b19fb 232 Gene3D G3DSA:1.10.10.10 151 221 5.5E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11200 6b356ff3c11589bb4c839f65423b19fb 232 SMART SM00419 166 213 0.0025 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RD1_RS11200 6b356ff3c11589bb4c839f65423b19fb 232 SUPERFAMILY SSF51206 9 143 3.54E-20 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RD1_RS01750 5b7d7b6c3fbee7f3a50e7890e676effb 297 PANTHER PTHR22572 7 290 3.3E-93 T 23-04-2016 RD1_RS01750 5b7d7b6c3fbee7f3a50e7890e676effb 297 PANTHER PTHR22572:SF14 7 290 3.3E-93 T 23-04-2016 RD1_RS01750 5b7d7b6c3fbee7f3a50e7890e676effb 297 Pfam PF00483 Nucleotidyl transferase 12 268 8.7E-29 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 RD1_RS01750 5b7d7b6c3fbee7f3a50e7890e676effb 297 Gene3D G3DSA:3.90.550.10 5 271 2.0E-65 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS01750 5b7d7b6c3fbee7f3a50e7890e676effb 297 SUPERFAMILY SSF53448 2 270 5.85E-62 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS01750 5b7d7b6c3fbee7f3a50e7890e676effb 297 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 5 267 1.3E-99 T 23-04-2016 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 RD1_RS18950 10481af6b2346bee6823c0cad6d35c22 519 Pfam PF00361 Proton-conducting membrane transporter 128 344 4.1E-43 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RD1_RS18950 10481af6b2346bee6823c0cad6d35c22 519 PANTHER PTHR22773 2 346 5.6E-103 T 23-04-2016 RD1_RS18950 10481af6b2346bee6823c0cad6d35c22 519 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 307 319 7.8E-28 T 23-04-2016 RD1_RS18950 10481af6b2346bee6823c0cad6d35c22 519 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 77 102 7.8E-28 T 23-04-2016 RD1_RS18950 10481af6b2346bee6823c0cad6d35c22 519 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 218 239 7.8E-28 T 23-04-2016 RD1_RS18950 10481af6b2346bee6823c0cad6d35c22 519 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 152 173 7.8E-28 T 23-04-2016 RD1_RS18950 10481af6b2346bee6823c0cad6d35c22 519 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 240 266 7.8E-28 T 23-04-2016 RD1_RS18950 10481af6b2346bee6823c0cad6d35c22 519 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 72 109 7.6E-9 T 23-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RD1_RS18950 10481af6b2346bee6823c0cad6d35c22 519 PANTHER PTHR22773:SF67 2 346 5.6E-103 T 23-04-2016 RD1_RS07985 c24b1b256c0ad3b34d73a6635bdf8be0 342 SUPERFAMILY SSF51735 2 146 2.93E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS07985 c24b1b256c0ad3b34d73a6635bdf8be0 342 PANTHER PTHR22604:SF122 1 338 7.0E-56 T 23-04-2016 RD1_RS07985 c24b1b256c0ad3b34d73a6635bdf8be0 342 Gene3D G3DSA:3.40.50.720 1 133 2.1E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS07985 c24b1b256c0ad3b34d73a6635bdf8be0 342 Gene3D G3DSA:3.30.360.10 134 251 8.2E-22 T 23-04-2016 RD1_RS07985 c24b1b256c0ad3b34d73a6635bdf8be0 342 Gene3D G3DSA:3.30.360.10 285 338 8.2E-22 T 23-04-2016 RD1_RS07985 c24b1b256c0ad3b34d73a6635bdf8be0 342 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 117 1.5E-22 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RD1_RS07985 c24b1b256c0ad3b34d73a6635bdf8be0 342 SUPERFAMILY SSF55347 121 289 1.29E-13 T 23-04-2016 RD1_RS07985 c24b1b256c0ad3b34d73a6635bdf8be0 342 PANTHER PTHR22604 1 338 7.0E-56 T 23-04-2016 RD1_RS13875 83e36f6b5c361b29950e50dd618758b8 210 Pfam PF09343 Conserved hypothetical protein 2217 (DUF2460) 5 209 2.5E-78 T 23-04-2016 IPR011740 Protein of unknown function DUF2460 RD1_RS13875 83e36f6b5c361b29950e50dd618758b8 210 TIGRFAM TIGR02217 chp_TIGR02217: TIGR02217 family protein 2 209 8.3E-84 T 23-04-2016 IPR011740 Protein of unknown function DUF2460 RD1_RS02375 8a8934893f5922e59a1a969196aefc01 534 PIRSF PIRSF000137 2 534 4.2E-146 T 23-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 RD1_RS02375 8a8934893f5922e59a1a969196aefc01 534 Pfam PF00732 GMC oxidoreductase 5 294 1.9E-83 T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS02375 8a8934893f5922e59a1a969196aefc01 534 PANTHER PTHR11552 5 531 2.8E-199 T 23-04-2016 RD1_RS02375 8a8934893f5922e59a1a969196aefc01 534 Pfam PF05199 GMC oxidoreductase 388 526 7.2E-42 T 23-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 RD1_RS02375 8a8934893f5922e59a1a969196aefc01 534 SUPERFAMILY SSF51905 4 288 3.5E-86 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02375 8a8934893f5922e59a1a969196aefc01 534 SUPERFAMILY SSF51905 473 533 3.5E-86 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02375 8a8934893f5922e59a1a969196aefc01 534 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 254 268 - T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS02375 8a8934893f5922e59a1a969196aefc01 534 SUPERFAMILY SSF54373 290 474 3.14E-53 T 23-04-2016 RD1_RS02375 8a8934893f5922e59a1a969196aefc01 534 Gene3D G3DSA:3.50.50.60 186 313 1.7E-116 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02375 8a8934893f5922e59a1a969196aefc01 534 Gene3D G3DSA:3.50.50.60 3 126 1.7E-116 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02375 8a8934893f5922e59a1a969196aefc01 534 Gene3D G3DSA:3.50.50.60 467 533 1.7E-116 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02375 8a8934893f5922e59a1a969196aefc01 534 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 81 104 - T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS09105 b76d0ea718d1d5e429d0c2dd1da4572d 85 Gene3D G3DSA:3.30.450.20 20 83 4.8E-12 T 23-04-2016 RD1_RS09105 b76d0ea718d1d5e429d0c2dd1da4572d 85 SUPERFAMILY SSF55785 19 83 4.54E-5 T 23-04-2016 IPR000014 PAS domain RD1_RS12145 db59ee1103a10dc8299dbef5067f18ad 175 PANTHER PTHR13061 1 171 6.5E-68 T 23-04-2016 RD1_RS12145 db59ee1103a10dc8299dbef5067f18ad 175 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 122 1.7E-10 T 23-04-2016 IPR001451 Hexapeptide repeat RD1_RS12145 db59ee1103a10dc8299dbef5067f18ad 175 Gene3D G3DSA:2.160.10.10 3 167 2.1E-49 T 23-04-2016 RD1_RS12145 db59ee1103a10dc8299dbef5067f18ad 175 SUPERFAMILY SSF51161 3 168 1.94E-49 T 23-04-2016 IPR011004 Trimeric LpxA-like RD1_RS17460 b166dba398223b50d7ce767daf56cb49 184 SUPERFAMILY SSF52518 6 165 6.74E-27 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS17460 b166dba398223b50d7ce767daf56cb49 184 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 38 155 4.4E-20 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RD1_RS17460 b166dba398223b50d7ce767daf56cb49 184 Gene3D G3DSA:3.40.50.970 7 164 4.9E-22 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS17460 b166dba398223b50d7ce767daf56cb49 184 PANTHER PTHR18968:SF81 1 179 4.0E-34 T 23-04-2016 RD1_RS17460 b166dba398223b50d7ce767daf56cb49 184 PANTHER PTHR18968 1 179 4.0E-34 T 23-04-2016 RD1_RS17460 b166dba398223b50d7ce767daf56cb49 184 TIGRFAM TIGR03846 sulfopy_beta: sulfopyruvate decarboxylase, beta subunit 3 182 2.9E-74 T 23-04-2016 IPR022494 Sulfopyruvate decarboxylase, beta subunit GO:0003824|GO:0030976 KEGG: 00680+4.1.1.79|MetaCyc: PWY-6637|MetaCyc: PWY-6643 RD1_RS13040 214dcf5ab0126e8f91493b847f5cf238 86 Gene3D G3DSA:1.10.287.40 16 49 2.4E-4 T 23-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 RD1_RS13040 214dcf5ab0126e8f91493b847f5cf238 86 Pfam PF10073 Uncharacterized protein conserved in bacteria (DUF2312) 15 85 1.4E-33 T 23-04-2016 IPR018753 Azospirillum phage Cd, Gp10 RD1_RS13040 214dcf5ab0126e8f91493b847f5cf238 86 Hamap MF_00797 UPF0335 protein . 9 86 20.582 T 23-04-2016 IPR018753 Azospirillum phage Cd, Gp10 RD1_RS11340 567eab10e2c35941b9e486a856e9d334 291 Pfam PF01226 Formate/nitrite transporter 42 278 2.5E-42 T 23-04-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 RD1_RS11340 567eab10e2c35941b9e486a856e9d334 291 PANTHER PTHR30520 23 280 1.7E-60 T 23-04-2016 RD1_RS11340 567eab10e2c35941b9e486a856e9d334 291 PANTHER PTHR30520:SF2 23 280 1.7E-60 T 23-04-2016 RD1_RS11340 567eab10e2c35941b9e486a856e9d334 291 Gene3D G3DSA:1.20.1080.10 55 282 6.2E-42 T 23-04-2016 IPR023271 Aquaporin-like RD1_RS04100 d5f16383d9b8491c27526f93a2c0af34 281 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 250 9.0E-13 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD1_RS04100 d5f16383d9b8491c27526f93a2c0af34 281 Gene3D G3DSA:3.40.190.10 130 218 7.4E-8 T 23-04-2016 RD1_RS04100 d5f16383d9b8491c27526f93a2c0af34 281 SMART SM00062 37 263 1.1E-30 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RD1_RS04100 d5f16383d9b8491c27526f93a2c0af34 281 Gene3D G3DSA:3.40.190.10 35 129 7.4E-4 T 23-04-2016 RD1_RS04100 d5f16383d9b8491c27526f93a2c0af34 281 TIGRFAM TIGR03871 ABC_peri_MoxJ_2: quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein 37 269 1.8E-86 T 23-04-2016 IPR022448 Quinoprotein dehydrogenase-associated RD1_RS04100 d5f16383d9b8491c27526f93a2c0af34 281 SUPERFAMILY SSF53850 30 254 6.38E-24 T 23-04-2016 RD1_RS04105 76c82a538de9505b9566498d1bbc1316 184 TIGRFAM TIGR03865 PQQ_CXXCW: PQQ-dependent catabolism-associated CXXCW motif protein 11 176 5.2E-74 T 23-04-2016 IPR022376 PQQ-dependent catabolism-associated CXXCW motif RD1_RS04105 76c82a538de9505b9566498d1bbc1316 184 SUPERFAMILY SSF52821 45 176 4.58E-19 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS04105 76c82a538de9505b9566498d1bbc1316 184 Gene3D G3DSA:3.40.250.10 34 175 7.6E-12 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS19305 64e40407418ffedb04a9b8808fe9586c 151 Pfam PF06841 T4-like virus tail tube protein gp19 9 147 8.1E-43 T 23-04-2016 IPR010667 Bacteriophage T4, Gp19, tail tube GO:0005198 RD1_RS19305 64e40407418ffedb04a9b8808fe9586c 151 TIGRFAM TIGR02241 TIGR02241: conserved hypothetical phage tail region protein 6 149 6.5E-34 T 23-04-2016 IPR011747 Conserved hypothetical protein CHP02241 RD1_RS19305 64e40407418ffedb04a9b8808fe9586c 151 PANTHER PTHR38009:SF1 1 151 1.8E-20 T 23-04-2016 RD1_RS19305 64e40407418ffedb04a9b8808fe9586c 151 PANTHER PTHR38009 1 151 1.8E-20 T 23-04-2016 RD1_RS17365 3d37367d15323e3f93d5b6d23f6be91a 96 PANTHER PTHR33336 1 92 1.3E-16 T 23-04-2016 RD1_RS17365 3d37367d15323e3f93d5b6d23f6be91a 96 Gene3D G3DSA:3.30.70.900 1 94 3.7E-26 T 23-04-2016 RD1_RS17365 3d37367d15323e3f93d5b6d23f6be91a 96 SUPERFAMILY SSF54909 1 88 3.14E-22 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS17365 3d37367d15323e3f93d5b6d23f6be91a 96 PANTHER PTHR33336:SF5 1 92 1.3E-16 T 23-04-2016 RD1_RS17365 3d37367d15323e3f93d5b6d23f6be91a 96 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 3.0E-17 T 23-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain RD1_RS03690 5b11f82ce22494d3ab266995d6a9751e 666 SUPERFAMILY SSF52980 446 502 3.89E-6 T 23-04-2016 IPR011335 Restriction endonuclease type II-like RD1_RS03690 5b11f82ce22494d3ab266995d6a9751e 666 Gene3D G3DSA:3.40.1350.10 450 499 4.1E-4 T 23-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 RD1_RS17620 d2e5b99d1dffe2f838b35f7992d6104e 566 SUPERFAMILY SSF56235 18 146 2.87E-19 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS17620 d2e5b99d1dffe2f838b35f7992d6104e 566 PANTHER PTHR11772 21 309 2.2E-31 T 23-04-2016 RD1_RS17620 d2e5b99d1dffe2f838b35f7992d6104e 566 PANTHER PTHR11772:SF10 21 309 2.2E-31 T 23-04-2016 RD1_RS17620 d2e5b99d1dffe2f838b35f7992d6104e 566 Gene3D G3DSA:3.60.20.10 9 146 1.6E-27 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS17620 d2e5b99d1dffe2f838b35f7992d6104e 566 PANTHER PTHR11772:SF10 394 481 2.2E-31 T 23-04-2016 RD1_RS17620 d2e5b99d1dffe2f838b35f7992d6104e 566 Gene3D G3DSA:3.40.50.620 369 551 2.9E-45 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS17620 d2e5b99d1dffe2f838b35f7992d6104e 566 Gene3D G3DSA:3.40.50.620 147 300 2.9E-45 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS17620 d2e5b99d1dffe2f838b35f7992d6104e 566 Pfam PF00733 Asparagine synthase 161 493 1.6E-43 T 23-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 RD1_RS17620 d2e5b99d1dffe2f838b35f7992d6104e 566 Pfam PF13537 Glutamine amidotransferase domain 16 88 2.2E-11 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain RD1_RS17620 d2e5b99d1dffe2f838b35f7992d6104e 566 PANTHER PTHR11772 394 481 2.2E-31 T 23-04-2016 RD1_RS17620 d2e5b99d1dffe2f838b35f7992d6104e 566 PIRSF PIRSF001589 8 562 2.4E-59 T 23-04-2016 RD1_RS17620 d2e5b99d1dffe2f838b35f7992d6104e 566 SUPERFAMILY SSF52402 406 503 1.77E-41 T 23-04-2016 RD1_RS17620 d2e5b99d1dffe2f838b35f7992d6104e 566 SUPERFAMILY SSF52402 158 304 1.77E-41 T 23-04-2016 RD1_RS07625 110493859a87e2a509be81db3044b9d3 204 PANTHER PTHR11735:SF11 7 124 1.2E-29 T 23-04-2016 RD1_RS07625 110493859a87e2a509be81db3044b9d3 204 SUPERFAMILY SSF53067 7 103 8.42E-24 T 23-04-2016 RD1_RS07625 110493859a87e2a509be81db3044b9d3 204 Gene3D G3DSA:3.30.420.40 7 132 4.8E-32 T 23-04-2016 RD1_RS07625 110493859a87e2a509be81db3044b9d3 204 Pfam PF00814 Glycoprotease family 40 129 2.4E-20 T 23-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RD1_RS07625 110493859a87e2a509be81db3044b9d3 204 PANTHER PTHR11735 7 124 1.2E-29 T 23-04-2016 RD1_RS07625 110493859a87e2a509be81db3044b9d3 204 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 7 188 6.8E-42 T 23-04-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 RD1_RS05215 9dc4af1a9c8e85f7118eee014b7b18d2 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.9E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS05215 9dc4af1a9c8e85f7118eee014b7b18d2 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.9E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS05215 9dc4af1a9c8e85f7118eee014b7b18d2 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.9E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS05215 9dc4af1a9c8e85f7118eee014b7b18d2 296 Gene3D G3DSA:1.10.10.10 1 84 7.5E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS05215 9dc4af1a9c8e85f7118eee014b7b18d2 296 PANTHER PTHR30126 1 288 4.4E-63 T 23-04-2016 RD1_RS05215 9dc4af1a9c8e85f7118eee014b7b18d2 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 6.0E-17 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS05215 9dc4af1a9c8e85f7118eee014b7b18d2 296 SUPERFAMILY SSF53850 90 288 2.71E-25 T 23-04-2016 RD1_RS05215 9dc4af1a9c8e85f7118eee014b7b18d2 296 Gene3D G3DSA:3.40.190.10 93 173 1.4E-5 T 23-04-2016 RD1_RS05215 9dc4af1a9c8e85f7118eee014b7b18d2 296 Gene3D G3DSA:3.40.190.10 174 255 4.6E-13 T 23-04-2016 RD1_RS05215 9dc4af1a9c8e85f7118eee014b7b18d2 296 Pfam PF03466 LysR substrate binding domain 92 286 2.1E-23 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS05215 9dc4af1a9c8e85f7118eee014b7b18d2 296 SUPERFAMILY SSF46785 1 87 1.15E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS05215 9dc4af1a9c8e85f7118eee014b7b18d2 296 PANTHER PTHR30126:SF29 1 288 4.4E-63 T 23-04-2016 RD1_RS05175 8f9ea137ed482ee24db77a10933a2520 221 Pfam PF00691 OmpA family 26 117 3.3E-17 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS05175 8f9ea137ed482ee24db77a10933a2520 221 Gene3D G3DSA:3.30.1330.60 23 127 4.8E-25 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS05175 8f9ea137ed482ee24db77a10933a2520 221 SUPERFAMILY SSF103088 15 127 2.35E-23 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS05175 8f9ea137ed482ee24db77a10933a2520 221 PANTHER PTHR30128 19 127 3.9E-22 T 23-04-2016 RD1_RS05175 8f9ea137ed482ee24db77a10933a2520 221 PRINTS PR01021 OMPA domain signature 58 73 9.4E-12 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RD1_RS05175 8f9ea137ed482ee24db77a10933a2520 221 PRINTS PR01021 OMPA domain signature 27 49 9.4E-12 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RD1_RS05175 8f9ea137ed482ee24db77a10933a2520 221 PRINTS PR01021 OMPA domain signature 73 89 9.4E-12 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RD1_RS09755 7c2f3432adb46ad3cbc3d3447573c38d 817 Gene3D G3DSA:3.40.50.300 8 185 2.8E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09755 7c2f3432adb46ad3cbc3d3447573c38d 817 PIRSF PIRSF037307 2 804 5.5E-173 T 23-04-2016 IPR017170 Lhr-like ATP-dependent RNA helicase, predicted GO:0005524|GO:0016818 RD1_RS09755 7c2f3432adb46ad3cbc3d3447573c38d 817 SMART SM00487 15 216 2.5E-27 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD1_RS09755 7c2f3432adb46ad3cbc3d3447573c38d 817 Gene3D G3DSA:3.40.50.300 239 354 1.7E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09755 7c2f3432adb46ad3cbc3d3447573c38d 817 SMART SM00490 262 345 2.0E-15 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS09755 7c2f3432adb46ad3cbc3d3447573c38d 817 PANTHER PTHR24031:SF122 36 357 4.9E-65 T 23-04-2016 RD1_RS09755 7c2f3432adb46ad3cbc3d3447573c38d 817 Pfam PF00270 DEAD/DEAH box helicase 34 187 8.2E-22 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RD1_RS09755 7c2f3432adb46ad3cbc3d3447573c38d 817 Pfam PF08494 DEAD/H associated 585 766 2.7E-40 T 23-04-2016 IPR013701 DEAD/H associated GO:0005524|GO:0016818 RD1_RS09755 7c2f3432adb46ad3cbc3d3447573c38d 817 TIGRFAM TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated 7 795 0.0 T 23-04-2016 IPR026362 DEXH box helicase, DNA ligase-associated RD1_RS09755 7c2f3432adb46ad3cbc3d3447573c38d 817 SUPERFAMILY SSF52540 31 351 7.84E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09755 7c2f3432adb46ad3cbc3d3447573c38d 817 PANTHER PTHR24031 36 357 4.9E-65 T 23-04-2016 RD1_RS09755 7c2f3432adb46ad3cbc3d3447573c38d 817 Pfam PF00271 Helicase conserved C-terminal domain 239 340 2.1E-16 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS06340 06b7b6c92e5ab1550717b844a84edcbc 561 PANTHER PTHR10909 177 561 1.1E-113 T 23-04-2016 RD1_RS06340 06b7b6c92e5ab1550717b844a84edcbc 561 Gene3D G3DSA:2.40.110.10 296 400 2.6E-29 T 23-04-2016 RD1_RS06340 06b7b6c92e5ab1550717b844a84edcbc 561 Gene3D G3DSA:1.10.540.10 176 290 5.0E-35 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS06340 06b7b6c92e5ab1550717b844a84edcbc 561 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 411 560 3.7E-40 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS06340 06b7b6c92e5ab1550717b844a84edcbc 561 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 179 290 2.8E-32 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS06340 06b7b6c92e5ab1550717b844a84edcbc 561 Gene3D G3DSA:1.20.140.10 401 561 5.7E-56 T 23-04-2016 RD1_RS06340 06b7b6c92e5ab1550717b844a84edcbc 561 SUPERFAMILY SSF56645 176 422 2.23E-69 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RD1_RS06340 06b7b6c92e5ab1550717b844a84edcbc 561 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 297 397 2.2E-18 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RD1_RS06340 06b7b6c92e5ab1550717b844a84edcbc 561 SUPERFAMILY SSF47203 409 561 4.51E-47 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS06340 06b7b6c92e5ab1550717b844a84edcbc 561 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 518 537 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RD1_RS10980 ee2c650efa90423fe7ba39063bf0bd53 227 TIGRFAM TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL 1 218 3.5E-95 T 23-04-2016 IPR012701 Phosphonate C-P lyase system, PhnL KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399 RD1_RS10980 ee2c650efa90423fe7ba39063bf0bd53 227 Gene3D G3DSA:3.40.50.300 1 214 3.5E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10980 ee2c650efa90423fe7ba39063bf0bd53 227 PANTHER PTHR24220 3 214 1.6E-105 T 23-04-2016 RD1_RS10980 ee2c650efa90423fe7ba39063bf0bd53 227 PANTHER PTHR24220:SF380 3 214 1.6E-105 T 23-04-2016 RD1_RS10980 ee2c650efa90423fe7ba39063bf0bd53 227 SUPERFAMILY SSF52540 2 217 7.05E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10980 ee2c650efa90423fe7ba39063bf0bd53 227 Pfam PF00005 ABC transporter 25 174 7.3E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS10980 ee2c650efa90423fe7ba39063bf0bd53 227 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS10980 ee2c650efa90423fe7ba39063bf0bd53 227 SMART SM00382 33 222 3.3E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS17420 3f7b861222e056c3e6c7f58708be0176 222 PANTHER PTHR31715 12 217 2.8E-110 T 23-04-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 RD1_RS17420 3f7b861222e056c3e6c7f58708be0176 222 SUPERFAMILY SSF52540 8 204 1.59E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17420 3f7b861222e056c3e6c7f58708be0176 222 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 13 203 6.0E-93 T 23-04-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 RD1_RS17420 3f7b861222e056c3e6c7f58708be0176 222 Gene3D G3DSA:3.40.50.300 12 205 6.2E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17420 3f7b861222e056c3e6c7f58708be0176 222 Hamap MF_01389 Urease accessory protein UreG [ureG]. 11 209 44.455 T 23-04-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 RD1_RS17420 3f7b861222e056c3e6c7f58708be0176 222 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 15 185 5.3E-35 T 23-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RD1_RS17420 3f7b861222e056c3e6c7f58708be0176 222 PIRSF PIRSF005624 6 212 2.5E-45 T 23-04-2016 RD1_RS00155 5df5c6ba4b386dbf161a47970d393065 392 Gene3D G3DSA:3.90.1150.10 260 389 8.3E-16 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS00155 5df5c6ba4b386dbf161a47970d393065 392 PANTHER PTHR11751 12 388 1.3E-96 T 23-04-2016 RD1_RS00155 5df5c6ba4b386dbf161a47970d393065 392 PANTHER PTHR11751:SF354 12 388 1.3E-96 T 23-04-2016 RD1_RS00155 5df5c6ba4b386dbf161a47970d393065 392 SUPERFAMILY SSF53383 23 389 1.71E-82 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS00155 5df5c6ba4b386dbf161a47970d393065 392 Pfam PF00155 Aminotransferase class I and II 33 376 2.9E-40 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS00155 5df5c6ba4b386dbf161a47970d393065 392 Gene3D G3DSA:3.40.640.10 43 259 1.1E-55 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS08615 f23f6b015ca10daa1edef018c717f659 279 PANTHER PTHR30465 20 279 4.5E-75 T 23-04-2016 RD1_RS08615 f23f6b015ca10daa1edef018c717f659 279 PANTHER PTHR30465:SF10 20 279 4.5E-75 T 23-04-2016 RD1_RS08615 f23f6b015ca10daa1edef018c717f659 279 SUPERFAMILY SSF161098 71 258 1.39E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08615 f23f6b015ca10daa1edef018c717f659 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 272 2.0E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08615 f23f6b015ca10daa1edef018c717f659 279 Gene3D G3DSA:1.10.3720.10 67 272 1.2E-17 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS14410 c62545f302f76f1d5ede8d85ce65cb05 313 PANTHER PTHR12304 4 313 5.4E-153 T 23-04-2016 IPR023186 Inosine/uridine-preferring nucleoside hydrolase RD1_RS14410 c62545f302f76f1d5ede8d85ce65cb05 313 SUPERFAMILY SSF53590 4 312 8.76E-109 T 23-04-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain RD1_RS14410 c62545f302f76f1d5ede8d85ce65cb05 313 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 4 303 5.7E-77 T 23-04-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain RD1_RS14410 c62545f302f76f1d5ede8d85ce65cb05 313 ProSitePatterns PS01247 Inosine-uridine preferring nucleoside hydrolase family signature. 9 19 - T 23-04-2016 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site GO:0016799 RD1_RS14410 c62545f302f76f1d5ede8d85ce65cb05 313 Gene3D G3DSA:3.90.245.10 2 312 5.5E-115 T 23-04-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain RD1_RS14410 c62545f302f76f1d5ede8d85ce65cb05 313 PANTHER PTHR12304:SF19 4 313 5.4E-153 T 23-04-2016 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 Gene3D G3DSA:1.10.8.60 498 581 3.6E-33 T 23-04-2016 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 673 681 - T 23-04-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 592 608 4.7E-52 T 23-04-2016 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 700 719 4.7E-52 T 23-04-2016 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 354 373 4.7E-52 T 23-04-2016 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 670 689 4.7E-52 T 23-04-2016 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 723 741 4.7E-52 T 23-04-2016 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 SUPERFAMILY SSF52540 311 587 1.3E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 Gene3D G3DSA:3.40.50.300 309 497 9.0E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 Gene3D G3DSA:3.30.230.10 587 768 8.9E-73 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 SMART SM00464 8 200 2.9E-69 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 Hamap MF_01973 Lon protease [lon]. 9 769 70.516 T 23-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 567 769 6.1E-93 T 23-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 SUPERFAMILY SSF88697 10 199 1.09E-42 T 23-04-2016 IPR015947 PUA-like domain RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 PANTHER PTHR10046 10 773 0.0 T 23-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 PANTHER PTHR10046:SF43 10 773 0.0 T 23-04-2016 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 SMART SM00382 346 492 6.6E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 350 484 6.4E-21 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 TIGRFAM TIGR00763 lon: endopeptidase La 10 768 1.2E-297 T 23-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 9 199 1.3E-39 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 PIRSF PIRSF001174 1 772 0.0 T 23-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RD1_RS13570 8422f74c4b6ba85542fef7fcd26f1785 803 SUPERFAMILY SSF54211 592 767 4.17E-57 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS02215 43a3aaf739b387b4ab727778a9665fb5 358 Gene3D G3DSA:2.60.120.40 240 341 1.8E-7 T 23-04-2016 IPR008983 Tumour necrosis factor-like domain GO:0005515 RD1_RS02215 43a3aaf739b387b4ab727778a9665fb5 358 SUPERFAMILY SSF49842 237 357 1.77E-8 T 23-04-2016 IPR008983 Tumour necrosis factor-like domain GO:0005515 RD1_RS02215 43a3aaf739b387b4ab727778a9665fb5 358 Pfam PF10983 Protein of unknown function (DUF2793) 24 109 9.2E-32 T 23-04-2016 IPR021251 Protein of unknown function DUF2793 RD1_RS13350 6bd5cae09dd3d3c2a8ee85840593d7b0 202 Gene3D G3DSA:1.10.3480.10 11 199 2.5E-43 T 23-04-2016 IPR020945 DMSO/Nitrate reductase chaperone RD1_RS13350 6bd5cae09dd3d3c2a8ee85840593d7b0 202 PANTHER PTHR34227 1 198 1.9E-56 T 23-04-2016 RD1_RS13350 6bd5cae09dd3d3c2a8ee85840593d7b0 202 Pfam PF02613 Nitrate reductase delta subunit 48 167 5.5E-27 T 23-04-2016 IPR020945 DMSO/Nitrate reductase chaperone RD1_RS13350 6bd5cae09dd3d3c2a8ee85840593d7b0 202 SUPERFAMILY SSF89155 9 199 9.42E-46 T 23-04-2016 IPR020945 DMSO/Nitrate reductase chaperone RD1_RS13350 6bd5cae09dd3d3c2a8ee85840593d7b0 202 PANTHER PTHR34227:SF4 1 198 1.9E-56 T 23-04-2016 RD1_RS14475 d60836c0a96482ec14152280287846c0 199 Gene3D G3DSA:3.40.10.10 63 95 8.0E-4 T 23-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 RD1_RS00430 b682895a121b7610d06d75f8dd07f2ee 379 Pfam PF00850 Histone deacetylase domain 25 309 8.2E-57 T 23-04-2016 IPR023801 Histone deacetylase domain RD1_RS00430 b682895a121b7610d06d75f8dd07f2ee 379 Gene3D G3DSA:3.40.800.20 15 330 7.2E-76 T 23-04-2016 IPR023801 Histone deacetylase domain RD1_RS00430 b682895a121b7610d06d75f8dd07f2ee 379 PANTHER PTHR10625:SF10 19 321 3.0E-74 T 23-04-2016 RD1_RS00430 b682895a121b7610d06d75f8dd07f2ee 379 SUPERFAMILY SSF52768 12 347 3.5E-87 T 23-04-2016 RD1_RS00430 b682895a121b7610d06d75f8dd07f2ee 379 PANTHER PTHR10625 19 321 3.0E-74 T 23-04-2016 IPR000286 Histone deacetylase superfamily RD1_RS00430 b682895a121b7610d06d75f8dd07f2ee 379 PRINTS PR01270 Histone deacetylase superfamily signature 244 254 1.6E-16 T 23-04-2016 IPR000286 Histone deacetylase superfamily RD1_RS00430 b682895a121b7610d06d75f8dd07f2ee 379 PRINTS PR01270 Histone deacetylase superfamily signature 164 179 1.6E-16 T 23-04-2016 IPR000286 Histone deacetylase superfamily RD1_RS00430 b682895a121b7610d06d75f8dd07f2ee 379 PRINTS PR01270 Histone deacetylase superfamily signature 131 154 1.6E-16 T 23-04-2016 IPR000286 Histone deacetylase superfamily RD1_RS04300 7ba956cb5782408df3cd16222ae9d9a6 394 Pfam PF00155 Aminotransferase class I and II 27 389 7.3E-66 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS04300 7ba956cb5782408df3cd16222ae9d9a6 394 PANTHER PTHR11879:SF12 1 392 7.6E-154 T 23-04-2016 RD1_RS04300 7ba956cb5782408df3cd16222ae9d9a6 394 PRINTS PR00799 Aspartate aminotransferase signature 203 215 1.8E-27 T 23-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RD1_RS04300 7ba956cb5782408df3cd16222ae9d9a6 394 PRINTS PR00799 Aspartate aminotransferase signature 338 356 1.8E-27 T 23-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RD1_RS04300 7ba956cb5782408df3cd16222ae9d9a6 394 PRINTS PR00799 Aspartate aminotransferase signature 172 191 1.8E-27 T 23-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RD1_RS04300 7ba956cb5782408df3cd16222ae9d9a6 394 PRINTS PR00799 Aspartate aminotransferase signature 270 295 1.8E-27 T 23-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RD1_RS04300 7ba956cb5782408df3cd16222ae9d9a6 394 SUPERFAMILY SSF53383 1 391 1.06E-99 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS04300 7ba956cb5782408df3cd16222ae9d9a6 394 Gene3D G3DSA:3.40.640.10 46 310 1.9E-84 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS04300 7ba956cb5782408df3cd16222ae9d9a6 394 PANTHER PTHR11879 1 392 7.6E-154 T 23-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RD1_RS18795 ce667ce6924d63f6a57d09d89387d5d2 474 SUPERFAMILY SSF56059 16 211 1.08E-63 T 23-04-2016 RD1_RS18795 ce667ce6924d63f6a57d09d89387d5d2 474 SUPERFAMILY SSF56059 319 465 1.08E-63 T 23-04-2016 RD1_RS18795 ce667ce6924d63f6a57d09d89387d5d2 474 Pfam PF14403 Circularly permuted ATP-grasp type 2 73 450 5.6E-158 T 23-04-2016 IPR025841 Circularly permuted ATP-grasp type 2 RD1_RS18795 ce667ce6924d63f6a57d09d89387d5d2 474 PANTHER PTHR34595:SF3 8 473 8.5E-263 T 23-04-2016 RD1_RS18795 ce667ce6924d63f6a57d09d89387d5d2 474 PANTHER PTHR34595 8 473 8.5E-263 T 23-04-2016 RD1_RS18795 ce667ce6924d63f6a57d09d89387d5d2 474 PIRSF PIRSF005522 1 474 8.8E-219 T 23-04-2016 IPR016450 Uncharacterised conserved protein UCP005522 RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 Gene3D G3DSA:1.10.2060.10 52 169 1.1E-46 T 23-04-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 PIRSF PIRSF000197 1 1138 0.0 T 23-04-2016 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 502 983 3.1E-185 T 23-04-2016 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 Gene3D G3DSA:3.40.309.10 777 961 6.2E-48 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 Pfam PF01619 Proline dehydrogenase 179 470 1.9E-91 T 23-04-2016 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|UniPathway: UPA00261 RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 PANTHER PTHR11699:SF18 519 983 3.0E-154 T 23-04-2016 RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 789 800 - T 23-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 Gene3D G3DSA:3.40.605.10 653 776 9.6E-39 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 Gene3D G3DSA:3.40.605.10 540 648 6.3E-17 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 SUPERFAMILY SSF51730 171 491 6.28E-109 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 Pfam PF00171 Aldehyde dehydrogenase family 553 983 7.5E-104 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 SUPERFAMILY SSF81935 3 170 2.88E-57 T 23-04-2016 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 58 168 4.0E-43 T 23-04-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 PANTHER PTHR11699 519 983 3.0E-154 T 23-04-2016 RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 Gene3D G3DSA:3.20.20.220 171 494 9.7E-100 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like RD1_RS11540 805a0e2bfc0bfd57d9409ae4a95172f9 1139 SUPERFAMILY SSF53720 522 982 7.33E-116 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS13050 7bfc247a2934739649891adef7dd5965 141 Pfam PF04273 Putative phosphatase (DUF442) 3 108 1.0E-32 T 23-04-2016 IPR005939 Beta-lactamase hydrolase-like GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- RD1_RS13050 7bfc247a2934739649891adef7dd5965 141 Gene3D G3DSA:3.90.190.10 1 137 1.1E-41 T 23-04-2016 IPR029021 Protein-tyrosine phosphatase-like RD1_RS13050 7bfc247a2934739649891adef7dd5965 141 SUPERFAMILY SSF52799 2 108 2.65E-6 T 23-04-2016 IPR029021 Protein-tyrosine phosphatase-like RD1_RS13050 7bfc247a2934739649891adef7dd5965 141 TIGRFAM TIGR01244 TIGR01244: TIGR01244 family protein 2 135 5.6E-39 T 23-04-2016 IPR005939 Beta-lactamase hydrolase-like GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- RD1_RS05460 0db82e56f63ec930084a9a84d09e0e76 337 Gene3D G3DSA:1.10.240.10 211 303 1.7E-18 T 23-04-2016 RD1_RS05460 0db82e56f63ec930084a9a84d09e0e76 337 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 16 25 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS05460 0db82e56f63ec930084a9a84d09e0e76 337 Pfam PF00579 tRNA synthetases class I (W and Y) 8 285 3.2E-73 T 23-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS05460 0db82e56f63ec930084a9a84d09e0e76 337 PANTHER PTHR10055:SF10 8 337 1.9E-159 T 23-04-2016 RD1_RS05460 0db82e56f63ec930084a9a84d09e0e76 337 SUPERFAMILY SSF52374 8 335 1.43E-93 T 23-04-2016 RD1_RS05460 0db82e56f63ec930084a9a84d09e0e76 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 70 89 2.5E-23 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RD1_RS05460 0db82e56f63ec930084a9a84d09e0e76 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 20 36 2.5E-23 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RD1_RS05460 0db82e56f63ec930084a9a84d09e0e76 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 200 210 2.5E-23 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RD1_RS05460 0db82e56f63ec930084a9a84d09e0e76 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 146 167 2.5E-23 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RD1_RS05460 0db82e56f63ec930084a9a84d09e0e76 337 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 7 336 37.935 T 23-04-2016 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2 RD1_RS05460 0db82e56f63ec930084a9a84d09e0e76 337 Gene3D G3DSA:3.40.50.620 8 210 1.3E-82 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS05460 0db82e56f63ec930084a9a84d09e0e76 337 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 8 335 1.9E-97 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RD1_RS05460 0db82e56f63ec930084a9a84d09e0e76 337 PANTHER PTHR10055 8 337 1.9E-159 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RD1_RS01165 28f2fc226a67c78deae92f20a08fa461 401 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 225 372 5.5E-31 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS01165 28f2fc226a67c78deae92f20a08fa461 401 SUPERFAMILY SSF47203 224 375 2.58E-37 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RD1_RS01165 28f2fc226a67c78deae92f20a08fa461 401 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 3 112 6.0E-16 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS01165 28f2fc226a67c78deae92f20a08fa461 401 SUPERFAMILY SSF56645 2 221 1.7E-54 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RD1_RS01165 28f2fc226a67c78deae92f20a08fa461 401 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 118 213 2.5E-21 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RD1_RS01165 28f2fc226a67c78deae92f20a08fa461 401 PANTHER PTHR10909:SF305 1 392 3.0E-91 T 23-04-2016 RD1_RS01165 28f2fc226a67c78deae92f20a08fa461 401 Gene3D G3DSA:2.40.110.10 118 214 2.0E-25 T 23-04-2016 RD1_RS01165 28f2fc226a67c78deae92f20a08fa461 401 Gene3D G3DSA:1.10.540.10 2 114 2.6E-22 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RD1_RS01165 28f2fc226a67c78deae92f20a08fa461 401 Gene3D G3DSA:1.20.140.10 215 375 4.1E-39 T 23-04-2016 RD1_RS01165 28f2fc226a67c78deae92f20a08fa461 401 PANTHER PTHR10909 1 392 3.0E-91 T 23-04-2016 RD1_RS12140 5fc063f276d32736b2efa351408b3fd4 214 SMART SM00072 6 190 2.4E-59 T 23-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RD1_RS12140 5fc063f276d32736b2efa351408b3fd4 214 Gene3D G3DSA:3.40.50.300 3 46 5.1E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12140 5fc063f276d32736b2efa351408b3fd4 214 Hamap MF_00328 Guanylate kinase [gmk]. 5 190 33.937 T 23-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RD1_RS12140 5fc063f276d32736b2efa351408b3fd4 214 PANTHER PTHR23117 4 214 3.0E-80 T 23-04-2016 RD1_RS12140 5fc063f276d32736b2efa351408b3fd4 214 ProSitePatterns PS00856 Guanylate kinase-like signature. 41 58 - T 23-04-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RD1_RS12140 5fc063f276d32736b2efa351408b3fd4 214 Gene3D G3DSA:3.40.50.300 89 204 2.4E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12140 5fc063f276d32736b2efa351408b3fd4 214 Pfam PF00625 Guanylate kinase 9 188 2.0E-44 T 23-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RD1_RS12140 5fc063f276d32736b2efa351408b3fd4 214 PANTHER PTHR23117:SF13 4 214 3.0E-80 T 23-04-2016 RD1_RS12140 5fc063f276d32736b2efa351408b3fd4 214 Gene3D G3DSA:3.30.63.10 47 88 5.8E-24 T 23-04-2016 RD1_RS12140 5fc063f276d32736b2efa351408b3fd4 214 SUPERFAMILY SSF52540 4 197 3.56E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12140 5fc063f276d32736b2efa351408b3fd4 214 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 7 187 1.3E-66 T 23-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RD1_RS01045 c42732e7871e93a1407987bc27ab0a64 211 SUPERFAMILY SSF51206 89 202 4.58E-27 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RD1_RS01045 c42732e7871e93a1407987bc27ab0a64 211 ProDom PD058023 TRANSMEMBRANE SO1069 MEMBRANE VCA0743 SO4196 VVA0623 VPA0666 HI1736 PM0424 7 71 7.0E-5 T 23-04-2016 IPR020137 Uncharacterised protein family HI1736 RD1_RS01045 c42732e7871e93a1407987bc27ab0a64 211 SMART SM00100 83 194 3.9E-6 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS01045 c42732e7871e93a1407987bc27ab0a64 211 PANTHER PTHR24567 7 199 5.2E-16 T 23-04-2016 RD1_RS01045 c42732e7871e93a1407987bc27ab0a64 211 Pfam PF00027 Cyclic nucleotide-binding domain 102 178 5.1E-18 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS01045 c42732e7871e93a1407987bc27ab0a64 211 Gene3D G3DSA:2.60.120.10 93 200 6.9E-25 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS03330 df1fba9d20044ec05033f65f7d4e3346 201 Pfam PF01794 Ferric reductase like transmembrane component 52 162 2.9E-18 T 23-04-2016 IPR013130 Ferric reductase transmembrane component-like domain RD1_RS03330 df1fba9d20044ec05033f65f7d4e3346 201 PANTHER PTHR36964 6 200 3.5E-47 T 23-04-2016 RD1_RS03330 df1fba9d20044ec05033f65f7d4e3346 201 Hamap MF_01207 Sulfoxide reductase heme-binding subunit YedZ [yedZ]. 11 201 23.21 T 23-04-2016 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 RD1_RS14265 64cd682795d2ccc1eba2368b74febbc6 434 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 5 322 2.6E-51 T 23-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 RD1_RS14265 64cd682795d2ccc1eba2368b74febbc6 434 SUPERFAMILY SSF51395 1 323 4.0E-72 T 23-04-2016 RD1_RS14265 64cd682795d2ccc1eba2368b74febbc6 434 Pfam PF14697 4Fe-4S dicluster domain 340 398 7.3E-23 T 23-04-2016 RD1_RS14265 64cd682795d2ccc1eba2368b74febbc6 434 Gene3D G3DSA:3.20.20.70 6 311 2.4E-77 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS14265 64cd682795d2ccc1eba2368b74febbc6 434 SUPERFAMILY SSF54862 338 414 9.42E-14 T 23-04-2016 RD1_RS14265 64cd682795d2ccc1eba2368b74febbc6 434 Pfam PF01180 Dihydroorotate dehydrogenase 6 307 3.1E-27 T 23-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 RD1_RS14265 64cd682795d2ccc1eba2368b74febbc6 434 Gene3D G3DSA:3.30.70.20 323 406 2.1E-16 T 23-04-2016 RD1_RS14265 64cd682795d2ccc1eba2368b74febbc6 434 PANTHER PTHR11938:SF102 3 402 2.3E-81 T 23-04-2016 RD1_RS14265 64cd682795d2ccc1eba2368b74febbc6 434 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 380 391 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS14265 64cd682795d2ccc1eba2368b74febbc6 434 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 347 358 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS14265 64cd682795d2ccc1eba2368b74febbc6 434 PANTHER PTHR11938 3 402 2.3E-81 T 23-04-2016 RD1_RS16750 dfd559a7d5e1d574d7cec6b000966744 318 SUPERFAMILY SSF100950 67 317 4.94E-61 T 23-04-2016 RD1_RS16750 dfd559a7d5e1d574d7cec6b000966744 318 Pfam PF04198 Putative sugar-binding domain 64 316 4.5E-70 T 23-04-2016 IPR007324 Sugar-binding domain, putative GO:0030246 RD1_RS16750 dfd559a7d5e1d574d7cec6b000966744 318 Gene3D G3DSA:3.40.50.1360 59 317 8.1E-68 T 23-04-2016 RD1_RS16750 dfd559a7d5e1d574d7cec6b000966744 318 PANTHER PTHR34294 6 318 5.0E-70 T 23-04-2016 RD1_RS16750 dfd559a7d5e1d574d7cec6b000966744 318 PANTHER PTHR34294:SF2 6 318 5.0E-70 T 23-04-2016 RD1_RS00560 1376ddb509df85ef8291ac3ea7887b77 521 SMART SM00327 337 512 2.9E-17 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS00560 1376ddb509df85ef8291ac3ea7887b77 521 Pfam PF13519 von Willebrand factor type A domain 340 443 1.3E-14 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS00560 1376ddb509df85ef8291ac3ea7887b77 521 PANTHER PTHR10338 334 481 2.1E-23 T 23-04-2016 RD1_RS00560 1376ddb509df85ef8291ac3ea7887b77 521 PANTHER PTHR10338 155 232 2.1E-23 T 23-04-2016 RD1_RS00560 1376ddb509df85ef8291ac3ea7887b77 521 SUPERFAMILY SSF52540 68 204 1.08E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS00560 1376ddb509df85ef8291ac3ea7887b77 521 Gene3D G3DSA:1.10.8.80 136 205 2.1E-15 T 23-04-2016 RD1_RS00560 1376ddb509df85ef8291ac3ea7887b77 521 PANTHER PTHR10338:SF126 334 481 2.1E-23 T 23-04-2016 RD1_RS00560 1376ddb509df85ef8291ac3ea7887b77 521 PANTHER PTHR10338:SF126 155 232 2.1E-23 T 23-04-2016 RD1_RS00560 1376ddb509df85ef8291ac3ea7887b77 521 Gene3D G3DSA:3.40.50.410 340 482 5.7E-14 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS00560 1376ddb509df85ef8291ac3ea7887b77 521 SUPERFAMILY SSF53300 340 504 1.75E-21 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS18770 b1a6a734194b9d7bd7e11970c3c24f93 222 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 72 204 1.5E-16 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS14565 a3d960e9b8c69853c9348bed0a941fe7 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 23-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site RD1_RS14565 a3d960e9b8c69853c9348bed0a941fe7 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 7 106 1.9E-31 T 23-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RD1_RS14565 a3d960e9b8c69853c9348bed0a941fe7 107 SUPERFAMILY SSF89360 7 96 2.16E-26 T 23-04-2016 IPR000361 FeS cluster biogenesis RD1_RS14565 a3d960e9b8c69853c9348bed0a941fe7 107 Gene3D G3DSA:2.60.300.12 6 93 8.8E-29 T 23-04-2016 IPR000361 FeS cluster biogenesis RD1_RS14565 a3d960e9b8c69853c9348bed0a941fe7 107 PANTHER PTHR10072 7 107 4.6E-44 T 23-04-2016 RD1_RS14565 a3d960e9b8c69853c9348bed0a941fe7 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 6 102 1.1E-17 T 23-04-2016 IPR000361 FeS cluster biogenesis RD1_RS14565 a3d960e9b8c69853c9348bed0a941fe7 107 PANTHER PTHR10072:SF46 7 107 4.6E-44 T 23-04-2016 RD1_RS14905 f33a21e5ca098014b23a15acd77265f6 494 Gene3D G3DSA:3.40.50.2020 284 451 8.6E-43 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS14905 f33a21e5ca098014b23a15acd77265f6 494 PANTHER PTHR11907 22 489 9.1E-220 T 23-04-2016 RD1_RS14905 f33a21e5ca098014b23a15acd77265f6 494 PANTHER PTHR11907:SF0 22 489 9.1E-220 T 23-04-2016 RD1_RS14905 f33a21e5ca098014b23a15acd77265f6 494 Gene3D G3DSA:3.60.20.10 25 271 6.2E-64 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS14905 f33a21e5ca098014b23a15acd77265f6 494 Pfam PF13537 Glutamine amidotransferase domain 111 226 2.7E-21 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain RD1_RS14905 f33a21e5ca098014b23a15acd77265f6 494 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 25 476 2.8E-148 T 23-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 RD1_RS14905 f33a21e5ca098014b23a15acd77265f6 494 SUPERFAMILY SSF53271 263 482 3.27E-69 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS14905 f33a21e5ca098014b23a15acd77265f6 494 PIRSF PIRSF000485 21 490 2.3E-163 T 23-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 RD1_RS14905 f33a21e5ca098014b23a15acd77265f6 494 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 24 477 45.713 T 23-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 RD1_RS14905 f33a21e5ca098014b23a15acd77265f6 494 SUPERFAMILY SSF56235 25 265 3.26E-63 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS17385 cd06c44097e1c00c8025492d3afb3e61 101 PANTHER PTHR33569:SF1 1 101 2.7E-62 T 23-04-2016 RD1_RS17385 cd06c44097e1c00c8025492d3afb3e61 101 Pfam PF00699 Urease beta subunit 3 99 3.1E-46 T 23-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17385 cd06c44097e1c00c8025492d3afb3e61 101 SUPERFAMILY SSF51278 1 101 3.66E-47 T 23-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17385 cd06c44097e1c00c8025492d3afb3e61 101 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 31.847 T 23-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17385 cd06c44097e1c00c8025492d3afb3e61 101 PANTHER PTHR33569 1 101 2.7E-62 T 23-04-2016 RD1_RS17385 cd06c44097e1c00c8025492d3afb3e61 101 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 99 3.1E-46 T 23-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS17385 cd06c44097e1c00c8025492d3afb3e61 101 Gene3D G3DSA:2.10.150.10 1 100 7.0E-51 T 23-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 6.350803E-13 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 6.350803E-13 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 6.350803E-13 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 6.350803E-13 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 Hamap MF_01570 Proline--tRNA ligase [proS]. 1 440 62.125 T 23-04-2016 IPR023716 Proline-tRNA ligase, class IIa, type 2 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 SUPERFAMILY SSF52954 336 443 4.91E-27 T 23-04-2016 IPR004154 Anticodon-binding RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 Gene3D G3DSA:3.40.50.800 341 442 1.3E-24 T 23-04-2016 IPR004154 Anticodon-binding RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 Gene3D G3DSA:3.30.930.10 260 340 3.2E-93 T 23-04-2016 RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 Gene3D G3DSA:3.30.930.10 6 204 3.2E-93 T 23-04-2016 RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 331 1.9E-35 T 23-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 Pfam PF03129 Anticodon binding domain 349 440 6.3E-18 T 23-04-2016 IPR004154 Anticodon-binding RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 PANTHER PTHR11451:SF3 243 441 2.0E-123 T 23-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 PANTHER PTHR11451:SF3 4 216 2.0E-123 T 23-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 SUPERFAMILY SSF55681 10 238 4.11E-90 T 23-04-2016 RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 SUPERFAMILY SSF55681 280 351 4.11E-90 T 23-04-2016 RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 PANTHER PTHR11451 243 441 2.0E-123 T 23-04-2016 RD1_RS09470 a9500120e77a5a4ba84b660c0d5b17d4 451 PANTHER PTHR11451 4 216 2.0E-123 T 23-04-2016 RD1_RS15235 fc74e6e1f7ec23baae967c78073f9f45 325 Gene3D G3DSA:1.10.3720.10 109 320 3.4E-26 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS15235 fc74e6e1f7ec23baae967c78073f9f45 325 SUPERFAMILY SSF161098 108 306 1.57E-25 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS15235 fc74e6e1f7ec23baae967c78073f9f45 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 130 323 3.4E-28 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS15235 fc74e6e1f7ec23baae967c78073f9f45 325 PANTHER PTHR30465:SF2 18 324 2.7E-110 T 23-04-2016 RD1_RS15235 fc74e6e1f7ec23baae967c78073f9f45 325 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 25 64 4.6E-12 T 23-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RD1_RS15235 fc74e6e1f7ec23baae967c78073f9f45 325 PANTHER PTHR30465 18 324 2.7E-110 T 23-04-2016 RD1_RS06165 0c8479a66ae4ab36c259f6878edc8b60 390 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 3 386 2.2E-107 T 23-04-2016 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 RD1_RS06165 0c8479a66ae4ab36c259f6878edc8b60 390 PANTHER PTHR11751:SF422 2 383 9.6E-102 T 23-04-2016 RD1_RS06165 0c8479a66ae4ab36c259f6878edc8b60 390 SUPERFAMILY SSF53383 4 388 9.49E-92 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS06165 0c8479a66ae4ab36c259f6878edc8b60 390 Gene3D G3DSA:3.40.640.10 45 253 2.3E-49 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS06165 0c8479a66ae4ab36c259f6878edc8b60 390 Gene3D G3DSA:3.90.1150.10 254 387 2.5E-35 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS06165 0c8479a66ae4ab36c259f6878edc8b60 390 PANTHER PTHR11751 2 383 9.6E-102 T 23-04-2016 RD1_RS06165 0c8479a66ae4ab36c259f6878edc8b60 390 Pfam PF00155 Aminotransferase class I and II 41 382 8.2E-44 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS17300 ef197b57f31ad59b9ce61a7d8612f338 324 Gene3D G3DSA:3.40.367.20 105 304 1.4E-49 T 23-04-2016 RD1_RS17300 ef197b57f31ad59b9ce61a7d8612f338 324 Pfam PF02685 Glucokinase 10 319 3.1E-74 T 23-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 RD1_RS17300 ef197b57f31ad59b9ce61a7d8612f338 324 PANTHER PTHR30514:SF0 5 324 1.9E-50 T 23-04-2016 RD1_RS17300 ef197b57f31ad59b9ce61a7d8612f338 324 PANTHER PTHR30514 5 324 1.9E-50 T 23-04-2016 RD1_RS17300 ef197b57f31ad59b9ce61a7d8612f338 324 SUPERFAMILY SSF53067 10 319 3.27E-52 T 23-04-2016 RD1_RS15580 d737b7bc7feb97142e4f559f34dc10ad 391 SUPERFAMILY SSF53901 269 390 1.11E-44 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS15580 d737b7bc7feb97142e4f559f34dc10ad 391 Gene3D G3DSA:3.40.47.10 275 390 7.3E-71 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS15580 d737b7bc7feb97142e4f559f34dc10ad 391 Gene3D G3DSA:3.40.47.10 141 192 7.3E-71 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS15580 d737b7bc7feb97142e4f559f34dc10ad 391 SUPERFAMILY SSF53901 3 268 1.73E-80 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS15580 d737b7bc7feb97142e4f559f34dc10ad 391 PANTHER PTHR18919 1 391 6.1E-217 T 23-04-2016 RD1_RS15580 d737b7bc7feb97142e4f559f34dc10ad 391 PANTHER PTHR18919:SF95 1 391 6.1E-217 T 23-04-2016 RD1_RS15580 d737b7bc7feb97142e4f559f34dc10ad 391 PIRSF PIRSF000429 1 391 5.1E-121 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RD1_RS15580 d737b7bc7feb97142e4f559f34dc10ad 391 Gene3D G3DSA:3.40.47.10 4 123 8.3E-72 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS15580 d737b7bc7feb97142e4f559f34dc10ad 391 Gene3D G3DSA:3.40.47.10 193 274 8.3E-72 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS15580 d737b7bc7feb97142e4f559f34dc10ad 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 4.3E-138 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RD1_RS15580 d737b7bc7feb97142e4f559f34dc10ad 391 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 23-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 RD1_RS15580 d737b7bc7feb97142e4f559f34dc10ad 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 23-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 RD1_RS15580 d737b7bc7feb97142e4f559f34dc10ad 391 Pfam PF00108 Thiolase, N-terminal domain 4 260 1.4E-100 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RD1_RS15580 d737b7bc7feb97142e4f559f34dc10ad 391 Pfam PF02803 Thiolase, C-terminal domain 269 390 3.3E-51 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RD1_RS15580 d737b7bc7feb97142e4f559f34dc10ad 391 ProSitePatterns PS00737 Thiolases signature 2. 337 353 - T 23-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 RD1_RS16150 9292247665017bd4b49bf4e9196964fa 162 SMART SM01001 4 155 4.6E-95 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RD1_RS16150 9292247665017bd4b49bf4e9196964fa 162 Gene3D G3DSA:3.40.50.7700 3 157 4.0E-70 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RD1_RS16150 9292247665017bd4b49bf4e9196964fa 162 PANTHER PTHR23046 4 159 5.4E-77 T 23-04-2016 RD1_RS16150 9292247665017bd4b49bf4e9196964fa 162 Pfam PF00731 AIR carboxylase 6 151 8.8E-62 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RD1_RS16150 9292247665017bd4b49bf4e9196964fa 162 PANTHER PTHR23046:SF2 4 159 5.4E-77 T 23-04-2016 RD1_RS16150 9292247665017bd4b49bf4e9196964fa 162 PIRSF PIRSF001338 1 161 2.0E-65 T 23-04-2016 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE GO:0006189|GO:0034023 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234|UniPathway: UPA00074 RD1_RS16150 9292247665017bd4b49bf4e9196964fa 162 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 6 159 31.681 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RD1_RS16150 9292247665017bd4b49bf4e9196964fa 162 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 6 155 1.1E-60 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RD1_RS16150 9292247665017bd4b49bf4e9196964fa 162 SUPERFAMILY SSF52255 3 158 3.4E-62 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RD1_RS10765 909dd2d0caf40ac80c8685d3e931f17f 454 PIRSF PIRSF000521 6 449 2.3E-35 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS10765 909dd2d0caf40ac80c8685d3e931f17f 454 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 255 292 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS10765 909dd2d0caf40ac80c8685d3e931f17f 454 Pfam PF00202 Aminotransferase class-III 28 445 1.8E-98 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS10765 909dd2d0caf40ac80c8685d3e931f17f 454 PANTHER PTHR11986 3 454 9.1E-249 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS10765 909dd2d0caf40ac80c8685d3e931f17f 454 Gene3D G3DSA:3.40.640.10 68 344 1.8E-79 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS10765 909dd2d0caf40ac80c8685d3e931f17f 454 PANTHER PTHR11986:SF81 3 454 9.1E-249 T 23-04-2016 RD1_RS10765 909dd2d0caf40ac80c8685d3e931f17f 454 Gene3D G3DSA:3.90.1150.10 6 66 4.8E-41 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS10765 909dd2d0caf40ac80c8685d3e931f17f 454 Gene3D G3DSA:3.90.1150.10 347 449 4.8E-41 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS10765 909dd2d0caf40ac80c8685d3e931f17f 454 SUPERFAMILY SSF53383 15 447 2.33E-117 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS16620 ab5171a546f4ec946bee179162931025 228 Gene3D G3DSA:1.20.910.10 10 226 6.2E-69 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RD1_RS16620 ab5171a546f4ec946bee179162931025 228 SUPERFAMILY SSF48613 3 224 3.42E-66 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RD1_RS16620 ab5171a546f4ec946bee179162931025 228 Pfam PF03070 TENA/THI-4/PQQC family 21 226 9.7E-43 T 23-04-2016 IPR004305 Thiaminase-2/PQQC RD1_RS16620 ab5171a546f4ec946bee179162931025 228 PANTHER PTHR20858 21 185 2.2E-57 T 23-04-2016 RD1_RS16620 ab5171a546f4ec946bee179162931025 228 PANTHER PTHR20858:SF17 21 185 2.2E-57 T 23-04-2016 RD1_RS16620 ab5171a546f4ec946bee179162931025 228 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 21 226 6.8E-40 T 23-04-2016 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356|UniPathway: UPA00060 RD1_RS16165 2dc53a5e3d28dd9e67943dc027370a9a 265 Pfam PF12697 Alpha/beta hydrolase family 28 138 2.8E-8 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS16165 2dc53a5e3d28dd9e67943dc027370a9a 265 PANTHER PTHR37946:SF1 8 233 1.9E-42 T 23-04-2016 RD1_RS16165 2dc53a5e3d28dd9e67943dc027370a9a 265 SUPERFAMILY SSF53474 26 224 2.79E-26 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS16165 2dc53a5e3d28dd9e67943dc027370a9a 265 Gene3D G3DSA:3.40.50.1820 25 231 3.5E-27 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS16165 2dc53a5e3d28dd9e67943dc027370a9a 265 PANTHER PTHR37946 8 233 1.9E-42 T 23-04-2016 RD1_RS16795 f4a2035b202d92a49e2110d143823cc3 211 SUPERFAMILY SSF47616 83 209 1.82E-21 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS16795 f4a2035b202d92a49e2110d143823cc3 211 Gene3D G3DSA:3.40.30.10 2 90 2.1E-30 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS16795 f4a2035b202d92a49e2110d143823cc3 211 PANTHER PTHR11260:SF289 1 210 3.7E-81 T 23-04-2016 RD1_RS16795 f4a2035b202d92a49e2110d143823cc3 211 Gene3D G3DSA:1.20.1050.10 91 210 1.1E-41 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS16795 f4a2035b202d92a49e2110d143823cc3 211 SUPERFAMILY SSF52833 2 91 5.61E-26 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS16795 f4a2035b202d92a49e2110d143823cc3 211 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 3 210 3.0E-78 T 23-04-2016 IPR005955 Maleylacetoacetate isomerase GO:0003824|GO:0005737|GO:0009072 RD1_RS16795 f4a2035b202d92a49e2110d143823cc3 211 PANTHER PTHR11260 1 210 3.7E-81 T 23-04-2016 RD1_RS16795 f4a2035b202d92a49e2110d143823cc3 211 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 75 6.4E-17 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RD1_RS07865 b184e6715c415a5b5ac835c0353757b4 99 Pfam PF04267 Sarcosine oxidase, delta subunit family 3 85 1.2E-33 T 23-04-2016 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS07865 b184e6715c415a5b5ac835c0353757b4 99 TIGRFAM TIGR01374 soxD: sarcosine oxidase, delta subunit family 3 86 4.3E-36 T 23-04-2016 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS04990 4152dabafed87146810ad66a9ea24248 104 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 73 103 6.3E-12 T 23-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RD1_RS04990 4152dabafed87146810ad66a9ea24248 104 PANTHER PTHR33823:SF4 7 103 1.0E-21 T 23-04-2016 RD1_RS04990 4152dabafed87146810ad66a9ea24248 104 SUPERFAMILY SSF57716 75 103 4.82E-7 T 23-04-2016 RD1_RS04990 4152dabafed87146810ad66a9ea24248 104 PANTHER PTHR33823 7 103 1.0E-21 T 23-04-2016 RD1_RS04990 4152dabafed87146810ad66a9ea24248 104 SUPERFAMILY SSF109635 4 74 2.88E-8 T 23-04-2016 RD1_RS05740 7c1a6b0788a398e1b64506c63cb185c7 527 SUPERFAMILY SSF52374 13 330 1.91E-58 T 23-04-2016 RD1_RS05740 7c1a6b0788a398e1b64506c63cb185c7 527 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 44 53 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS05740 7c1a6b0788a398e1b64506c63cb185c7 527 Hamap MF_00177 Lysine--tRNA ligase [lysS]. 12 519 30.137 T 23-04-2016 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RD1_RS05740 7c1a6b0788a398e1b64506c63cb185c7 527 Gene3D G3DSA:3.40.50.620 278 320 1.1E-4 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS05740 7c1a6b0788a398e1b64506c63cb185c7 527 Pfam PF01921 tRNA synthetases class I (K) 12 364 1.3E-131 T 23-04-2016 RD1_RS05740 7c1a6b0788a398e1b64506c63cb185c7 527 PANTHER PTHR37940 3 523 1.4E-142 T 23-04-2016 RD1_RS05740 7c1a6b0788a398e1b64506c63cb185c7 527 Gene3D G3DSA:1.10.10.350 426 519 2.2E-31 T 23-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RD1_RS05740 7c1a6b0788a398e1b64506c63cb185c7 527 SUPERFAMILY SSF48163 329 519 2.09E-43 T 23-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RD1_RS05740 7c1a6b0788a398e1b64506c63cb185c7 527 Gene3D G3DSA:3.40.50.620 13 194 6.8E-43 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS05740 7c1a6b0788a398e1b64506c63cb185c7 527 Gene3D G3DSA:3.40.50.620 231 277 6.8E-43 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS05740 7c1a6b0788a398e1b64506c63cb185c7 527 TIGRFAM TIGR00467 lysS_arch: lysine--tRNA ligase 38 511 2.4E-51 T 23-04-2016 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RD1_RS17915 437743db80f6a9f886b65e1f396d0581 205 Pfam PF02224 Cytidylate kinase 8 201 1.3E-51 T 23-04-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RD1_RS17915 437743db80f6a9f886b65e1f396d0581 205 Gene3D G3DSA:3.40.50.300 6 201 2.2E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17915 437743db80f6a9f886b65e1f396d0581 205 PANTHER PTHR21299 8 205 9.5E-42 T 23-04-2016 RD1_RS17915 437743db80f6a9f886b65e1f396d0581 205 SUPERFAMILY SSF52540 7 203 3.12E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17915 437743db80f6a9f886b65e1f396d0581 205 Hamap MF_00238 Cytidylate kinase [cmk]. 6 204 31.097 T 23-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RD1_RS16220 e6c0fd331cd79bd55c7b32979c6744eb 156 Pfam PF03692 Putative zinc- or iron-chelating domain 32 101 3.0E-9 T 23-04-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein RD1_RS16220 e6c0fd331cd79bd55c7b32979c6744eb 156 PANTHER PTHR37421:SF1 8 156 1.2E-53 T 23-04-2016 RD1_RS16220 e6c0fd331cd79bd55c7b32979c6744eb 156 PIRSF PIRSF006173 7 156 4.0E-62 T 23-04-2016 IPR008228 Uncharacterised conserved protein UCP006173 RD1_RS16220 e6c0fd331cd79bd55c7b32979c6744eb 156 PANTHER PTHR37421 8 156 1.2E-53 T 23-04-2016 RD1_RS16220 e6c0fd331cd79bd55c7b32979c6744eb 156 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 10 156 39.361 T 23-04-2016 IPR008228 Uncharacterised conserved protein UCP006173 RD1_RS03940 8e1144ffe34ddea9fd6a296ab923bb79 325 Pfam PF02653 Branched-chain amino acid transport system / permease component 36 306 3.5E-38 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS03940 8e1144ffe34ddea9fd6a296ab923bb79 325 PANTHER PTHR30482:SF10 15 318 8.8E-58 T 23-04-2016 RD1_RS03940 8e1144ffe34ddea9fd6a296ab923bb79 325 PANTHER PTHR30482 15 318 8.8E-58 T 23-04-2016 RD1_RS06960 33c65bd19a0dc96144503f8de40ca09a 298 PANTHER PTHR11795:SF371 1 288 6.2E-78 T 23-04-2016 RD1_RS06960 33c65bd19a0dc96144503f8de40ca09a 298 PANTHER PTHR11795 1 288 6.2E-78 T 23-04-2016 RD1_RS06960 33c65bd19a0dc96144503f8de40ca09a 298 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 280 1.1E-39 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS12730 2df3340bcd5c00fa6eba8bcbe0e172b3 317 TIGRFAM TIGR00510 lipA: lipoyl synthase 16 306 3.2E-109 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RD1_RS12730 2df3340bcd5c00fa6eba8bcbe0e172b3 317 PANTHER PTHR10949 16 305 1.1E-154 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RD1_RS12730 2df3340bcd5c00fa6eba8bcbe0e172b3 317 SUPERFAMILY SSF102114 36 302 3.14E-61 T 23-04-2016 RD1_RS12730 2df3340bcd5c00fa6eba8bcbe0e172b3 317 PIRSF PIRSF005963 2 316 2.7E-129 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RD1_RS12730 2df3340bcd5c00fa6eba8bcbe0e172b3 317 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 17 60 2.7E-6 T 23-04-2016 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RD1_RS12730 2df3340bcd5c00fa6eba8bcbe0e172b3 317 Pfam PF04055 Radical SAM superfamily 77 238 5.9E-9 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RD1_RS12730 2df3340bcd5c00fa6eba8bcbe0e172b3 317 Gene3D G3DSA:3.20.20.70 39 309 6.8E-69 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS12730 2df3340bcd5c00fa6eba8bcbe0e172b3 317 Hamap MF_00206 Lipoyl synthase [lipA]. 1 311 152.716 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RD1_RS12730 2df3340bcd5c00fa6eba8bcbe0e172b3 317 SMART SM00729 71 280 4.5E-9 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RD1_RS15645 1d7b3a6e600eb0a8f63b6d861b6a2c38 164 Gene3D G3DSA:3.40.50.300 1 161 3.5E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15645 1d7b3a6e600eb0a8f63b6d861b6a2c38 164 PANTHER PTHR40072:SF2 2 107 1.6E-18 T 23-04-2016 RD1_RS15645 1d7b3a6e600eb0a8f63b6d861b6a2c38 164 SUPERFAMILY SSF52540 1 161 1.49E-21 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15645 1d7b3a6e600eb0a8f63b6d861b6a2c38 164 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 3 159 1.5E-47 T 23-04-2016 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 RD1_RS15645 1d7b3a6e600eb0a8f63b6d861b6a2c38 164 PANTHER PTHR40072 2 107 1.6E-18 T 23-04-2016 RD1_RS15645 1d7b3a6e600eb0a8f63b6d861b6a2c38 164 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 4 134 2.7E-48 T 23-04-2016 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 RD1_RS04690 0a5727906eb949e8a9b612c4bc0cce52 441 SUPERFAMILY SSF47090 66 121 5.65E-9 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS04690 0a5727906eb949e8a9b612c4bc0cce52 441 Pfam PF01471 Putative peptidoglycan binding domain 70 114 5.8E-7 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS04690 0a5727906eb949e8a9b612c4bc0cce52 441 Gene3D G3DSA:1.10.101.10 70 121 2.3E-5 T 23-04-2016 IPR002477 Peptidoglycan binding-like RD1_RS10595 37e1f5a40031307a3c453ef4c4108d78 345 Gene3D G3DSA:3.40.50.1100 43 137 1.2E-34 T 23-04-2016 RD1_RS10595 37e1f5a40031307a3c453ef4c4108d78 345 PANTHER PTHR10314:SF83 1 330 2.5E-140 T 23-04-2016 RD1_RS10595 37e1f5a40031307a3c453ef4c4108d78 345 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 305 3.2E-64 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS10595 37e1f5a40031307a3c453ef4c4108d78 345 Gene3D G3DSA:3.40.50.1100 157 323 6.6E-62 T 23-04-2016 RD1_RS10595 37e1f5a40031307a3c453ef4c4108d78 345 Gene3D G3DSA:3.40.50.1100 2 42 6.6E-62 T 23-04-2016 RD1_RS10595 37e1f5a40031307a3c453ef4c4108d78 345 PANTHER PTHR10314 1 330 2.5E-140 T 23-04-2016 RD1_RS10595 37e1f5a40031307a3c453ef4c4108d78 345 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 23-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RD1_RS10595 37e1f5a40031307a3c453ef4c4108d78 345 SUPERFAMILY SSF53686 2 326 1.06E-87 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RD1_RS18670 0a3f5e690d2e654ca65445855f238e98 625 Pfam PF00691 OmpA family 496 591 6.7E-21 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS18670 0a3f5e690d2e654ca65445855f238e98 625 PRINTS PR01021 OMPA domain signature 527 542 1.3E-7 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RD1_RS18670 0a3f5e690d2e654ca65445855f238e98 625 PRINTS PR01021 OMPA domain signature 497 519 1.3E-7 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RD1_RS18670 0a3f5e690d2e654ca65445855f238e98 625 PRINTS PR01021 OMPA domain signature 542 558 1.3E-7 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RD1_RS18670 0a3f5e690d2e654ca65445855f238e98 625 Gene3D G3DSA:3.30.1330.60 487 598 3.9E-35 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS18670 0a3f5e690d2e654ca65445855f238e98 625 PANTHER PTHR30128 495 618 2.6E-33 T 23-04-2016 RD1_RS18670 0a3f5e690d2e654ca65445855f238e98 625 SUPERFAMILY SSF103088 481 596 5.1E-32 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS01205 ef5a771d07e4ac934d45431c60d001b9 140 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 18 138 3.1E-33 T 23-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RD1_RS01205 ef5a771d07e4ac934d45431c60d001b9 140 SUPERFAMILY SSF51269 22 76 2.83E-5 T 23-04-2016 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal RD1_RS01205 ef5a771d07e4ac934d45431c60d001b9 140 Pfam PF13144 Chaperone for flagella basal body P-ring formation 17 138 8.6E-27 T 23-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RD1_RS01205 ef5a771d07e4ac934d45431c60d001b9 140 SMART SM00858 19 77 4.1E-8 T 23-04-2016 IPR013974 SAF domain RD1_RS01205 ef5a771d07e4ac934d45431c60d001b9 140 PANTHER PTHR36307 15 138 9.4E-21 T 23-04-2016 RD1_RS10330 2c071c9e193b39267861d00f52fde840 230 Gene3D G3DSA:3.40.50.300 2 217 7.3E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10330 2c071c9e193b39267861d00f52fde840 230 PANTHER PTHR24220 4 222 1.6E-85 T 23-04-2016 RD1_RS10330 2c071c9e193b39267861d00f52fde840 230 SMART SM00382 31 220 1.3E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS10330 2c071c9e193b39267861d00f52fde840 230 SUPERFAMILY SSF52540 2 223 3.34E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10330 2c071c9e193b39267861d00f52fde840 230 Pfam PF00005 ABC transporter 22 167 7.2E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS10330 2c071c9e193b39267861d00f52fde840 230 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS10330 2c071c9e193b39267861d00f52fde840 230 PANTHER PTHR24220:SF430 4 222 1.6E-85 T 23-04-2016 RD1_RS15170 ac6599828f5d5eb8ad047cb8b3a34df2 398 PIRSF PIRSF000390 12 393 1.3E-59 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RD1_RS15170 ac6599828f5d5eb8ad047cb8b3a34df2 398 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 23 382 4.4E-62 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RD1_RS15170 ac6599828f5d5eb8ad047cb8b3a34df2 398 PANTHER PTHR30244 48 393 3.9E-50 T 23-04-2016 RD1_RS15170 ac6599828f5d5eb8ad047cb8b3a34df2 398 PANTHER PTHR30244:SF18 48 393 3.9E-50 T 23-04-2016 RD1_RS15170 ac6599828f5d5eb8ad047cb8b3a34df2 398 Gene3D G3DSA:3.40.640.10 14 259 1.3E-55 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS15170 ac6599828f5d5eb8ad047cb8b3a34df2 398 SUPERFAMILY SSF53383 13 388 1.81E-71 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS06920 7b33300f439d7e92056e4d6b8583c2ad 261 Pfam PF00795 Carbon-nitrogen hydrolase 3 244 1.1E-39 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS06920 7b33300f439d7e92056e4d6b8583c2ad 261 SUPERFAMILY SSF56317 1 259 9.68E-62 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS06920 7b33300f439d7e92056e4d6b8583c2ad 261 PANTHER PTHR23088 1 260 2.9E-54 T 23-04-2016 RD1_RS06920 7b33300f439d7e92056e4d6b8583c2ad 261 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 139 159 - T 23-04-2016 IPR001110 Uncharacterised protein family UPF0012, conserved site RD1_RS06920 7b33300f439d7e92056e4d6b8583c2ad 261 Gene3D G3DSA:3.60.110.10 1 260 2.8E-65 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS16715 701362a5f667a5dc3485a80158facdfb 346 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 62 345 4.4E-21 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 RD1_RS16715 701362a5f667a5dc3485a80158facdfb 346 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 136 315 2.8E-57 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RD1_RS16715 701362a5f667a5dc3485a80158facdfb 346 Gene3D G3DSA:3.40.50.720 136 316 4.9E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS16715 701362a5f667a5dc3485a80158facdfb 346 SUPERFAMILY SSF51735 126 316 1.65E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS16715 701362a5f667a5dc3485a80158facdfb 346 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 176 203 - T 23-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RD1_RS16715 701362a5f667a5dc3485a80158facdfb 346 PANTHER PTHR10996 58 345 3.6E-94 T 23-04-2016 RD1_RS16715 701362a5f667a5dc3485a80158facdfb 346 SUPERFAMILY SSF52283 48 162 5.53E-25 T 23-04-2016 RD1_RS16715 701362a5f667a5dc3485a80158facdfb 346 Gene3D G3DSA:3.40.50.720 61 135 4.4E-22 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03650 3ad91920bc0b4e0f8baa4b98929d4910 291 Gene3D G3DSA:3.40.50.300 20 171 1.8E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03650 3ad91920bc0b4e0f8baa4b98929d4910 291 SUPERFAMILY SSF52540 23 243 1.57E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03650 3ad91920bc0b4e0f8baa4b98929d4910 291 Pfam PF05621 Bacterial TniB protein 24 242 6.7E-20 T 23-04-2016 IPR008868 Bacterial TniB RD1_RS16230 fafa651c00a73efd4bc9764110017733 260 SUPERFAMILY SSF53474 6 258 1.3E-38 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS16230 fafa651c00a73efd4bc9764110017733 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 2.8E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS16230 fafa651c00a73efd4bc9764110017733 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 38 53 2.8E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS16230 fafa651c00a73efd4bc9764110017733 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 79 92 2.8E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS16230 fafa651c00a73efd4bc9764110017733 260 Gene3D G3DSA:3.40.50.1820 11 258 5.3E-35 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS16230 fafa651c00a73efd4bc9764110017733 260 PANTHER PTHR10992 6 259 1.9E-26 T 23-04-2016 RD1_RS16230 fafa651c00a73efd4bc9764110017733 260 Pfam PF12697 Alpha/beta hydrolase family 37 249 1.1E-16 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS16005 a476d57c5269773199a0d5ad333b1b28 348 Gene3D G3DSA:1.10.3470.10 16 347 4.4E-102 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RD1_RS16005 a476d57c5269773199a0d5ad333b1b28 348 SUPERFAMILY SSF81345 13 346 5.1E-78 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RD1_RS16005 a476d57c5269773199a0d5ad333b1b28 348 PANTHER PTHR30472:SF32 8 348 4.6E-122 T 23-04-2016 RD1_RS16005 a476d57c5269773199a0d5ad333b1b28 348 PANTHER PTHR30472 8 348 4.6E-122 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RD1_RS16005 a476d57c5269773199a0d5ad333b1b28 348 Pfam PF01032 FecCD transport family 26 345 1.1E-92 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RD1_RS10000 51c0514e237a1b4a87b9dc9352e27dc8 418 PANTHER PTHR30482 138 417 4.8E-106 T 23-04-2016 RD1_RS10000 51c0514e237a1b4a87b9dc9352e27dc8 418 PANTHER PTHR30482 46 95 4.8E-106 T 23-04-2016 RD1_RS10000 51c0514e237a1b4a87b9dc9352e27dc8 418 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 46 387 5.2E-92 T 23-04-2016 IPR017778 ABC transporter, urea, permease protein, UrtC RD1_RS10000 51c0514e237a1b4a87b9dc9352e27dc8 418 PANTHER PTHR30482:SF4 138 417 4.8E-106 T 23-04-2016 IPR017778 ABC transporter, urea, permease protein, UrtC RD1_RS10000 51c0514e237a1b4a87b9dc9352e27dc8 418 PANTHER PTHR30482:SF4 46 95 4.8E-106 T 23-04-2016 IPR017778 ABC transporter, urea, permease protein, UrtC RD1_RS10000 51c0514e237a1b4a87b9dc9352e27dc8 418 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 376 1.8E-37 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS13525 cc66e528e15f667145e63e6de304db51 292 Gene3D G3DSA:1.10.3720.10 5 283 2.4E-40 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13525 cc66e528e15f667145e63e6de304db51 292 SUPERFAMILY SSF161098 54 280 4.58E-42 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13525 cc66e528e15f667145e63e6de304db51 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 128 291 2.3E-12 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13525 cc66e528e15f667145e63e6de304db51 292 PANTHER PTHR32243 3 291 3.4E-91 T 23-04-2016 RD1_RS13525 cc66e528e15f667145e63e6de304db51 292 PANTHER PTHR32243:SF13 3 291 3.4E-91 T 23-04-2016 RD1_RS04520 130d0e85ddabab477b2abceea3ec5a58 79 Pfam PF04325 Protein of unknown function (DUF465) 29 75 2.7E-18 T 23-04-2016 IPR007420 Protein of unknown function DUF465 RD1_RS12250 90c9bfdb7c00e4fe083af1d5588fea8e 178 Gene3D G3DSA:3.40.630.30 9 174 2.7E-29 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS12250 90c9bfdb7c00e4fe083af1d5588fea8e 178 Pfam PF13302 Acetyltransferase (GNAT) domain 16 153 1.2E-22 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS12250 90c9bfdb7c00e4fe083af1d5588fea8e 178 SUPERFAMILY SSF55729 12 174 4.66E-28 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS12250 90c9bfdb7c00e4fe083af1d5588fea8e 178 PANTHER PTHR13256 1 174 1.7E-19 T 23-04-2016 RD1_RS12510 1ef4966a7a933edfcf96b759f61baf91 315 PANTHER PTHR11228 32 186 8.7E-21 T 23-04-2016 RD1_RS12510 1ef4966a7a933edfcf96b759f61baf91 315 Gene3D G3DSA:3.20.20.70 31 215 1.2E-26 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS12510 1ef4966a7a933edfcf96b759f61baf91 315 SUPERFAMILY SSF102114 30 219 2.94E-31 T 23-04-2016 RD1_RS12510 1ef4966a7a933edfcf96b759f61baf91 315 PANTHER PTHR11228:SF7 32 186 8.7E-21 T 23-04-2016 RD1_RS12510 1ef4966a7a933edfcf96b759f61baf91 315 Pfam PF13394 4Fe-4S single cluster domain 42 122 2.9E-7 T 23-04-2016 RD1_RS12510 1ef4966a7a933edfcf96b759f61baf91 315 Pfam PF04055 Radical SAM superfamily 39 185 2.4E-15 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RD1_RS01315 f857327e086d828dd56be00f2e6477b6 159 SUPERFAMILY SSF69118 26 155 1.89E-13 T 23-04-2016 IPR029032 AhpD-like RD1_RS01315 f857327e086d828dd56be00f2e6477b6 159 Gene3D G3DSA:1.20.1290.10 51 154 9.6E-10 T 23-04-2016 IPR029032 AhpD-like RD1_RS02550 557c8ea777eb104581ee08456aa04da2 80 PIRSF PIRSF006488 1 78 4.3E-23 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RD1_RS02550 557c8ea777eb104581ee08456aa04da2 80 Pfam PF02609 Exonuclease VII small subunit 11 60 9.5E-20 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RD1_RS02550 557c8ea777eb104581ee08456aa04da2 80 Gene3D G3DSA:1.10.287.1040 6 71 5.7E-26 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RD1_RS02550 557c8ea777eb104581ee08456aa04da2 80 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 10 70 15.6 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RD1_RS02550 557c8ea777eb104581ee08456aa04da2 80 SUPERFAMILY SSF116842 3 68 4.05E-21 T 23-04-2016 RD1_RS02550 557c8ea777eb104581ee08456aa04da2 80 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 10 63 1.4E-22 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RD1_RS02550 557c8ea777eb104581ee08456aa04da2 80 PANTHER PTHR34137 1 69 4.1E-19 T 23-04-2016 RD1_RS02550 557c8ea777eb104581ee08456aa04da2 80 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 42 1.0E-10 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RD1_RS08195 dbba35555cbe2b3e0095107138a958cc 151 Pfam PF03625 Domain of unknown function DUF302 55 117 1.1E-16 T 23-04-2016 IPR005180 Domain of unknown function DUF302 RD1_RS08195 dbba35555cbe2b3e0095107138a958cc 151 SUPERFAMILY SSF103247 23 147 7.46E-32 T 23-04-2016 IPR005180 Domain of unknown function DUF302 RD1_RS08195 dbba35555cbe2b3e0095107138a958cc 151 Gene3D G3DSA:3.30.310.70 23 147 4.4E-29 T 23-04-2016 IPR005180 Domain of unknown function DUF302 RD1_RS03080 a7647c6b8188451476aa1272899a3984 293 PANTHER PTHR10584:SF57 1 289 4.6E-77 T 23-04-2016 RD1_RS03080 a7647c6b8188451476aa1272899a3984 293 PANTHER PTHR10584 1 289 4.6E-77 T 23-04-2016 RD1_RS03080 a7647c6b8188451476aa1272899a3984 293 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 244 257 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RD1_RS03080 a7647c6b8188451476aa1272899a3984 293 Pfam PF00294 pfkB family carbohydrate kinase 1 289 8.7E-45 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RD1_RS03080 a7647c6b8188451476aa1272899a3984 293 Gene3D G3DSA:3.40.1190.20 1 290 5.4E-52 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS03080 a7647c6b8188451476aa1272899a3984 293 SUPERFAMILY SSF53613 1 288 7.17E-57 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS17345 92762ad3249752d4a099d1efd67dfec5 324 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 30 186 4.0E-37 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 RD1_RS17345 92762ad3249752d4a099d1efd67dfec5 324 SUPERFAMILY SSF51735 30 189 2.11E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17345 92762ad3249752d4a099d1efd67dfec5 324 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 192 312 4.7E-35 T 23-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RD1_RS17345 92762ad3249752d4a099d1efd67dfec5 324 SUPERFAMILY SSF48179 191 318 3.17E-35 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS17345 92762ad3249752d4a099d1efd67dfec5 324 PANTHER PTHR22981 14 323 5.8E-132 T 23-04-2016 RD1_RS17345 92762ad3249752d4a099d1efd67dfec5 324 PIRSF PIRSF000103 24 319 6.0E-67 T 23-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 RD1_RS17345 92762ad3249752d4a099d1efd67dfec5 324 Gene3D G3DSA:3.40.50.720 27 189 4.4E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17345 92762ad3249752d4a099d1efd67dfec5 324 PANTHER PTHR22981:SF27 14 323 5.8E-132 T 23-04-2016 RD1_RS17345 92762ad3249752d4a099d1efd67dfec5 324 Gene3D G3DSA:1.10.1040.10 191 319 1.3E-42 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS16040 8fe172e5ad42d4cec6f3fe7672c865de 104 Gene3D G3DSA:1.10.10.10 2 93 8.0E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS16040 8fe172e5ad42d4cec6f3fe7672c865de 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 46 61 3.8E-7 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS16040 8fe172e5ad42d4cec6f3fe7672c865de 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 61 76 3.8E-7 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS16040 8fe172e5ad42d4cec6f3fe7672c865de 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 11 26 3.8E-7 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS16040 8fe172e5ad42d4cec6f3fe7672c865de 104 SUPERFAMILY SSF46785 4 94 2.81E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS16040 8fe172e5ad42d4cec6f3fe7672c865de 104 SMART SM00418 9 89 1.3E-13 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS16040 8fe172e5ad42d4cec6f3fe7672c865de 104 PANTHER PTHR33154:SF5 8 102 3.2E-29 T 23-04-2016 RD1_RS16040 8fe172e5ad42d4cec6f3fe7672c865de 104 Pfam PF12840 Helix-turn-helix domain 9 70 1.4E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS16040 8fe172e5ad42d4cec6f3fe7672c865de 104 PANTHER PTHR33154 8 102 3.2E-29 T 23-04-2016 RD1_RS17700 88e340322bdce201c7bfa2c5a247c264 365 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 73 131 1.6E-17 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS17700 88e340322bdce201c7bfa2c5a247c264 365 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 88 99 2.0E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS17700 88e340322bdce201c7bfa2c5a247c264 365 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 99 109 2.0E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS17700 88e340322bdce201c7bfa2c5a247c264 365 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 109 120 2.0E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS17700 88e340322bdce201c7bfa2c5a247c264 365 PANTHER PTHR30427:SF1 70 363 8.8E-60 T 23-04-2016 RD1_RS17700 88e340322bdce201c7bfa2c5a247c264 365 Gene3D G3DSA:3.40.190.10 158 245 3.4E-18 T 23-04-2016 RD1_RS17700 88e340322bdce201c7bfa2c5a247c264 365 Pfam PF03466 LysR substrate binding domain 158 359 1.0E-28 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS17700 88e340322bdce201c7bfa2c5a247c264 365 SUPERFAMILY SSF53850 158 361 4.48E-30 T 23-04-2016 RD1_RS17700 88e340322bdce201c7bfa2c5a247c264 365 SUPERFAMILY SSF46785 70 148 1.85E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS17700 88e340322bdce201c7bfa2c5a247c264 365 Gene3D G3DSA:3.40.190.10 246 329 9.1E-11 T 23-04-2016 RD1_RS17700 88e340322bdce201c7bfa2c5a247c264 365 Gene3D G3DSA:1.10.10.10 71 153 5.4E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS17700 88e340322bdce201c7bfa2c5a247c264 365 PANTHER PTHR30427 70 363 8.8E-60 T 23-04-2016 RD1_RS14485 313a1c5344d2bfe8abf25038d56424d8 241 PANTHER PTHR37323 5 209 6.3E-15 T 23-04-2016 RD1_RS14485 313a1c5344d2bfe8abf25038d56424d8 241 Gene3D G3DSA:3.40.630.30 32 132 7.0E-10 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS14485 313a1c5344d2bfe8abf25038d56424d8 241 SUPERFAMILY SSF55729 1 210 1.11E-25 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS14485 313a1c5344d2bfe8abf25038d56424d8 241 Pfam PF13444 Acetyltransferase (GNAT) domain 19 113 1.3E-12 T 23-04-2016 RD1_RS01900 c8f9a392eebbdcef047430b2e26ea4ac 612 SUPERFAMILY SSF52540 352 601 1.01E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01900 c8f9a392eebbdcef047430b2e26ea4ac 612 Gene3D G3DSA:1.20.1560.10 28 330 3.5E-40 T 23-04-2016 RD1_RS01900 c8f9a392eebbdcef047430b2e26ea4ac 612 Gene3D G3DSA:3.40.50.300 361 595 7.4E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01900 c8f9a392eebbdcef047430b2e26ea4ac 612 SUPERFAMILY SSF90123 26 342 4.05E-51 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS01900 c8f9a392eebbdcef047430b2e26ea4ac 612 Pfam PF00664 ABC transporter transmembrane region 41 308 2.9E-19 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS01900 c8f9a392eebbdcef047430b2e26ea4ac 612 Pfam PF00005 ABC transporter 377 531 3.9E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS01900 c8f9a392eebbdcef047430b2e26ea4ac 612 PANTHER PTHR24221 2 610 5.9E-280 T 23-04-2016 RD1_RS01900 c8f9a392eebbdcef047430b2e26ea4ac 612 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS01900 c8f9a392eebbdcef047430b2e26ea4ac 612 PANTHER PTHR24221:SF203 2 610 5.9E-280 T 23-04-2016 RD1_RS01900 c8f9a392eebbdcef047430b2e26ea4ac 612 SMART SM00382 386 577 5.8E-20 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS03215 9ce8f88c519fdc3dfd17ab6f46f633af 206 PANTHER PTHR11260:SF238 1 199 5.3E-33 T 23-04-2016 RD1_RS03215 9ce8f88c519fdc3dfd17ab6f46f633af 206 Gene3D G3DSA:3.40.30.10 1 86 2.3E-25 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS03215 9ce8f88c519fdc3dfd17ab6f46f633af 206 SUPERFAMILY SSF47616 80 200 1.71E-21 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS03215 9ce8f88c519fdc3dfd17ab6f46f633af 206 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 72 1.2E-13 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RD1_RS03215 9ce8f88c519fdc3dfd17ab6f46f633af 206 SUPERFAMILY SSF52833 1 83 8.7E-19 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS03215 9ce8f88c519fdc3dfd17ab6f46f633af 206 Gene3D G3DSA:1.20.1050.10 87 192 5.7E-23 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS03215 9ce8f88c519fdc3dfd17ab6f46f633af 206 PANTHER PTHR11260 1 199 5.3E-33 T 23-04-2016 RD1_RS03215 9ce8f88c519fdc3dfd17ab6f46f633af 206 Pfam PF14497 Glutathione S-transferase, C-terminal domain 139 197 6.7E-6 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal RD1_RS15475 c5adb54147b1fafd245044eb0949ad1b 78 Pfam PF06568 Domain of unknown function (DUF1127) 32 59 7.9E-9 T 23-04-2016 IPR009506 Protein of unknown function DUF1127 RD1_RS05155 90c46079ad6028d0dda807865b3ed3ba 913 Gene3D G3DSA:2.150.10.10 750 879 4.0E-5 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS05155 90c46079ad6028d0dda807865b3ed3ba 913 SUPERFAMILY SSF51120 792 873 3.66E-12 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS05155 90c46079ad6028d0dda807865b3ed3ba 913 SUPERFAMILY SSF51120 742 765 3.66E-12 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS05155 90c46079ad6028d0dda807865b3ed3ba 913 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 809 827 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS05155 90c46079ad6028d0dda807865b3ed3ba 913 PRINTS PR00313 NodO calcium binding signature 822 831 9.7E-6 T 23-04-2016 RD1_RS05155 90c46079ad6028d0dda807865b3ed3ba 913 PRINTS PR00313 NodO calcium binding signature 813 821 9.7E-6 T 23-04-2016 RD1_RS05155 90c46079ad6028d0dda807865b3ed3ba 913 PRINTS PR00313 NodO calcium binding signature 801 812 9.7E-6 T 23-04-2016 RD1_RS07665 48aafcb73a4fb36dca2102ad87bc62cd 80 Pfam PF09360 Iron-binding zinc finger CDGSH type 17 42 1.3E-10 T 23-04-2016 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 RD1_RS07665 48aafcb73a4fb36dca2102ad87bc62cd 80 Pfam PF09360 Iron-binding zinc finger CDGSH type 51 77 1.5E-6 T 23-04-2016 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 RD1_RS07665 48aafcb73a4fb36dca2102ad87bc62cd 80 PANTHER PTHR13680:SF22 4 80 1.8E-24 T 23-04-2016 RD1_RS07665 48aafcb73a4fb36dca2102ad87bc62cd 80 SMART SM00704 48 80 0.11 T 23-04-2016 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 RD1_RS07665 48aafcb73a4fb36dca2102ad87bc62cd 80 SMART SM00704 10 47 2.6E-9 T 23-04-2016 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 RD1_RS07665 48aafcb73a4fb36dca2102ad87bc62cd 80 PANTHER PTHR13680 4 80 1.8E-24 T 23-04-2016 RD1_RS14420 ea8dc4a4299b6893cc263998cd251bce 470 PANTHER PTHR32057 6 447 1.5E-149 T 23-04-2016 RD1_RS14420 ea8dc4a4299b6893cc263998cd251bce 470 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 3 456 42.439 T 23-04-2016 IPR003846 Uncharacterised protein family UPF0061 RD1_RS14420 ea8dc4a4299b6893cc263998cd251bce 470 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 4 441 8.2E-112 T 23-04-2016 IPR003846 Uncharacterised protein family UPF0061 RD1_RS12180 7040292268785e56f0bc23851f0662cd 236 SUPERFAMILY SSF109755 9 230 2.41E-72 T 23-04-2016 RD1_RS12180 7040292268785e56f0bc23851f0662cd 236 Gene3D G3DSA:1.20.58.220 6 113 3.4E-31 T 23-04-2016 RD1_RS12180 7040292268785e56f0bc23851f0662cd 236 Gene3D G3DSA:1.20.58.220 123 226 2.4E-35 T 23-04-2016 RD1_RS12180 7040292268785e56f0bc23851f0662cd 236 PANTHER PTHR10010 1 233 4.8E-72 T 23-04-2016 RD1_RS12180 7040292268785e56f0bc23851f0662cd 236 PIRSF PIRSF003107 4 223 1.0E-65 T 23-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RD1_RS12180 7040292268785e56f0bc23851f0662cd 236 PANTHER PTHR10010:SF14 1 233 4.8E-72 T 23-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RD1_RS12180 7040292268785e56f0bc23851f0662cd 236 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 10 219 2.4E-70 T 23-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RD1_RS12180 7040292268785e56f0bc23851f0662cd 236 Pfam PF01895 PhoU domain 22 110 4.6E-21 T 23-04-2016 IPR026022 PhoU domain RD1_RS12180 7040292268785e56f0bc23851f0662cd 236 Pfam PF01895 PhoU domain 126 210 6.2E-22 T 23-04-2016 IPR026022 PhoU domain RD1_RS15030 c17c44693146bb6229bbe13ce8d87148 200 PANTHER PTHR33269 1 195 5.4E-61 T 23-04-2016 RD1_RS15030 c17c44693146bb6229bbe13ce8d87148 200 PANTHER PTHR33269:SF4 1 195 5.4E-61 T 23-04-2016 RD1_RS15030 c17c44693146bb6229bbe13ce8d87148 200 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 17 164 2.6E-38 T 23-04-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 RD1_RS00695 748963a63338d6bebd2a0f5f38175375 362 Gene3D G3DSA:3.40.1690.10 221 359 4.1E-48 T 23-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal RD1_RS00695 748963a63338d6bebd2a0f5f38175375 362 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 305 326 5.0E-28 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RD1_RS00695 748963a63338d6bebd2a0f5f38175375 362 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 11 33 5.0E-28 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RD1_RS00695 748963a63338d6bebd2a0f5f38175375 362 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 231 248 5.0E-28 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RD1_RS00695 748963a63338d6bebd2a0f5f38175375 362 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 275 290 5.0E-28 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RD1_RS00695 748963a63338d6bebd2a0f5f38175375 362 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 211 229 5.0E-28 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RD1_RS00695 748963a63338d6bebd2a0f5f38175375 362 Pfam PF01312 FlhB HrpN YscU SpaS Family 9 349 2.9E-100 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RD1_RS00695 748963a63338d6bebd2a0f5f38175375 362 SUPERFAMILY SSF160544 258 358 8.37E-33 T 23-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal RD1_RS00695 748963a63338d6bebd2a0f5f38175375 362 PANTHER PTHR30531 3 362 1.2E-78 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RD1_RS01375 d8842cbbf9e5739cf8c467e4fbe17fda 223 Pfam PF13462 Thioredoxin 51 220 2.8E-52 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS01375 d8842cbbf9e5739cf8c467e4fbe17fda 223 Gene3D G3DSA:3.40.30.10 151 218 1.3E-7 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS01375 d8842cbbf9e5739cf8c467e4fbe17fda 223 SUPERFAMILY SSF52833 52 219 1.38E-42 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS01375 d8842cbbf9e5739cf8c467e4fbe17fda 223 PANTHER PTHR13887 56 223 1.6E-31 T 23-04-2016 RD1_RS01375 d8842cbbf9e5739cf8c467e4fbe17fda 223 Gene3D G3DSA:3.40.30.10 49 144 2.0E-33 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS04820 5cfbef2476ec86f7d475bed4739ac49f 114 PIRSF PIRSF004555 7 114 3.3E-35 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RD1_RS04820 5cfbef2476ec86f7d475bed4739ac49f 114 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 9 103 21.23 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RD1_RS04820 5cfbef2476ec86f7d475bed4739ac49f 114 Gene3D G3DSA:3.30.1310.10 6 114 6.3E-41 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RD1_RS04820 5cfbef2476ec86f7d475bed4739ac49f 114 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 7 110 2.6E-24 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RD1_RS04820 5cfbef2476ec86f7d475bed4739ac49f 114 PANTHER PTHR33449 4 114 3.2E-36 T 23-04-2016 RD1_RS04820 5cfbef2476ec86f7d475bed4739ac49f 114 SUPERFAMILY SSF82607 15 107 1.57E-29 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RD1_RS04820 5cfbef2476ec86f7d475bed4739ac49f 114 PANTHER PTHR33449:SF1 4 114 3.2E-36 T 23-04-2016 RD1_RS04820 5cfbef2476ec86f7d475bed4739ac49f 114 Pfam PF02575 YbaB/EbfC DNA-binding family 15 104 7.8E-31 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RD1_RS11005 eb615a2ed2ea715a4880f25460eb1019 151 TIGRFAM TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG 10 150 5.9E-50 T 23-04-2016 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399 RD1_RS11005 eb615a2ed2ea715a4880f25460eb1019 151 Pfam PF06754 Phosphonate metabolism protein PhnG 10 149 4.0E-52 T 23-04-2016 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399 RD1_RS13820 b0ba6dce734b844eaa4de40c41afd09d 186 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 30 179 5.6E-40 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RD1_RS13820 b0ba6dce734b844eaa4de40c41afd09d 186 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 58 75 - T 23-04-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 RD1_RS13820 b0ba6dce734b844eaa4de40c41afd09d 186 PIRSF PIRSF001467 5 184 3.8E-26 T 23-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 RD1_RS13820 b0ba6dce734b844eaa4de40c41afd09d 186 PANTHER PTHR11071:SF78 23 160 1.4E-30 T 23-04-2016 RD1_RS13820 b0ba6dce734b844eaa4de40c41afd09d 186 PANTHER PTHR11071 23 160 1.4E-30 T 23-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 RD1_RS13820 b0ba6dce734b844eaa4de40c41afd09d 186 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 127 139 5.5E-10 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RD1_RS13820 b0ba6dce734b844eaa4de40c41afd09d 186 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 37 52 5.5E-10 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RD1_RS13820 b0ba6dce734b844eaa4de40c41afd09d 186 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 140 155 5.5E-10 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RD1_RS13820 b0ba6dce734b844eaa4de40c41afd09d 186 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 63 75 5.5E-10 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RD1_RS13820 b0ba6dce734b844eaa4de40c41afd09d 186 SUPERFAMILY SSF50891 8 180 3.36E-42 T 23-04-2016 IPR029000 Cyclophilin-like domain RD1_RS13820 b0ba6dce734b844eaa4de40c41afd09d 186 Gene3D G3DSA:2.40.100.10 25 185 6.7E-41 T 23-04-2016 IPR029000 Cyclophilin-like domain RD1_RS18025 88333c62a3fbb0414d60006d5ece397b 363 PANTHER PTHR11695:SF571 16 362 4.6E-92 T 23-04-2016 RD1_RS18025 88333c62a3fbb0414d60006d5ece397b 363 SMART SM00829 13 359 2.5E-4 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RD1_RS18025 88333c62a3fbb0414d60006d5ece397b 363 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 RD1_RS18025 88333c62a3fbb0414d60006d5ece397b 363 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 147 1.1E-23 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RD1_RS18025 88333c62a3fbb0414d60006d5ece397b 363 SUPERFAMILY SSF51735 152 328 3.44E-40 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS18025 88333c62a3fbb0414d60006d5ece397b 363 SUPERFAMILY SSF50129 311 361 2.07E-7 T 23-04-2016 IPR011032 GroES-like RD1_RS18025 88333c62a3fbb0414d60006d5ece397b 363 Gene3D G3DSA:3.90.180.10 1 182 7.3E-54 T 23-04-2016 IPR011032 GroES-like RD1_RS18025 88333c62a3fbb0414d60006d5ece397b 363 SUPERFAMILY SSF50129 2 185 2.28E-48 T 23-04-2016 IPR011032 GroES-like RD1_RS18025 88333c62a3fbb0414d60006d5ece397b 363 PANTHER PTHR11695 16 362 4.6E-92 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS18025 88333c62a3fbb0414d60006d5ece397b 363 Pfam PF00107 Zinc-binding dehydrogenase 190 320 1.8E-24 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RD1_RS18025 88333c62a3fbb0414d60006d5ece397b 363 Gene3D G3DSA:3.40.50.720 183 296 4.8E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS07815 0803fb5446e3a04c98928d538532e102 147 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 1.0E-29 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type RD1_RS07815 0803fb5446e3a04c98928d538532e102 147 Pfam PF02082 Transcriptional regulator 1 81 1.9E-22 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type RD1_RS07815 0803fb5446e3a04c98928d538532e102 147 PANTHER PTHR33221 2 140 3.2E-48 T 23-04-2016 RD1_RS07815 0803fb5446e3a04c98928d538532e102 147 SUPERFAMILY SSF46785 2 132 3.02E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07815 0803fb5446e3a04c98928d538532e102 147 Gene3D G3DSA:1.10.10.10 1 132 1.6E-39 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07815 0803fb5446e3a04c98928d538532e102 147 PANTHER PTHR33221:SF4 2 140 3.2E-48 T 23-04-2016 RD1_RS05910 028851c575d0d88ef3856f6a47c70840 331 Gene3D G3DSA:3.40.50.150 158 311 3.8E-22 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS05910 028851c575d0d88ef3856f6a47c70840 331 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 253 259 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RD1_RS05910 028851c575d0d88ef3856f6a47c70840 331 PANTHER PTHR18895:SF70 138 308 6.3E-27 T 23-04-2016 RD1_RS05910 028851c575d0d88ef3856f6a47c70840 331 SUPERFAMILY SSF53335 150 302 2.3E-25 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS05910 028851c575d0d88ef3856f6a47c70840 331 PANTHER PTHR18895 138 308 6.3E-27 T 23-04-2016 RD1_RS05910 028851c575d0d88ef3856f6a47c70840 331 Pfam PF05175 Methyltransferase small domain 157 320 7.1E-48 T 23-04-2016 IPR007848 Methyltransferase small domain GO:0008168 RD1_RS05205 037dd7648aaa124b593564aa06781c4c 127 Gene3D G3DSA:3.10.450.50 4 124 4.5E-22 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS05205 037dd7648aaa124b593564aa06781c4c 127 SUPERFAMILY SSF54427 3 124 1.91E-28 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS05205 037dd7648aaa124b593564aa06781c4c 127 Pfam PF12893 Putative lumazine-binding 6 121 7.2E-33 T 23-04-2016 RD1_RS05220 64d6564983d7d30aa660bfa8ddbf866e 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 1.1E-10 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS05220 64d6564983d7d30aa660bfa8ddbf866e 198 Gene3D G3DSA:1.10.357.10 3 189 1.2E-23 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RD1_RS05220 64d6564983d7d30aa660bfa8ddbf866e 198 PANTHER PTHR30055 8 197 2.0E-15 T 23-04-2016 RD1_RS05220 64d6564983d7d30aa660bfa8ddbf866e 198 SUPERFAMILY SSF46689 3 61 3.09E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS04135 68c9a1a8996544969526fe608b1a36fd 323 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 102 140 7.0E-10 T 23-04-2016 IPR011964 YVTN beta-propeller repeat RD1_RS04135 68c9a1a8996544969526fe608b1a36fd 323 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 281 320 5.1E-13 T 23-04-2016 IPR011964 YVTN beta-propeller repeat RD1_RS04135 68c9a1a8996544969526fe608b1a36fd 323 PANTHER PTHR13833 22 183 1.5E-25 T 23-04-2016 RD1_RS04135 68c9a1a8996544969526fe608b1a36fd 323 PANTHER PTHR13833 279 322 1.5E-25 T 23-04-2016 RD1_RS04135 68c9a1a8996544969526fe608b1a36fd 323 SUPERFAMILY SSF50974 6 321 1.36E-68 T 23-04-2016 IPR011045 Nitrous oxide reductase, N-terminal RD1_RS04135 68c9a1a8996544969526fe608b1a36fd 323 TIGRFAM TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein 12 322 2.9E-153 T 23-04-2016 IPR022456 PQQ-dependent catabolism-associated beta-propeller protein RD1_RS04135 68c9a1a8996544969526fe608b1a36fd 323 Gene3D G3DSA:2.130.10.10 14 321 1.5E-59 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RD1_RS04135 68c9a1a8996544969526fe608b1a36fd 323 Pfam PF10282 Lactonase, 7-bladed beta-propeller 179 304 4.1E-7 T 23-04-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 RD1_RS04515 673f745260709e5c3de7f13f0540b936 296 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 33 260 7.2E-115 T 23-04-2016 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 RD1_RS04515 673f745260709e5c3de7f13f0540b936 296 Gene3D G3DSA:3.40.50.300 13 277 2.2E-108 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04515 673f745260709e5c3de7f13f0540b936 296 PANTHER PTHR34383:SF2 27 289 4.1E-151 T 23-04-2016 RD1_RS04515 673f745260709e5c3de7f13f0540b936 296 PIRSF PIRSF028756 2 288 3.3E-121 T 23-04-2016 IPR016898 Polyphosphate kinase 2 RD1_RS04515 673f745260709e5c3de7f13f0540b936 296 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 34 259 1.5E-105 T 23-04-2016 IPR022488 Polyphosphate kinase-2-related RD1_RS04515 673f745260709e5c3de7f13f0540b936 296 PANTHER PTHR34383 27 289 4.1E-151 T 23-04-2016 RD1_RS04515 673f745260709e5c3de7f13f0540b936 296 SUPERFAMILY SSF52540 65 251 4.87E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18480 3107f2808b9c5ac9d131dcacf554aeca 176 Gene3D G3DSA:3.40.50.300 73 171 2.5E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18480 3107f2808b9c5ac9d131dcacf554aeca 176 Gene3D G3DSA:3.40.50.300 39 72 1.3E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18480 3107f2808b9c5ac9d131dcacf554aeca 176 SUPERFAMILY SSF52540 59 175 3.92E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18480 3107f2808b9c5ac9d131dcacf554aeca 176 Pfam PF13401 AAA domain 61 175 1.7E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS07615 399088c2e9e2b3b2a98aae5bb3b22ce9 331 PANTHER PTHR34296 26 317 4.0E-96 T 23-04-2016 RD1_RS07615 399088c2e9e2b3b2a98aae5bb3b22ce9 331 SUPERFAMILY SSF53822 35 262 5.89E-17 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS07615 399088c2e9e2b3b2a98aae5bb3b22ce9 331 Gene3D G3DSA:3.40.50.2300 127 287 4.8E-56 T 23-04-2016 RD1_RS07615 399088c2e9e2b3b2a98aae5bb3b22ce9 331 PANTHER PTHR34296:SF2 26 317 4.0E-96 T 23-04-2016 RD1_RS07615 399088c2e9e2b3b2a98aae5bb3b22ce9 331 Pfam PF02608 Basic membrane protein 29 309 1.5E-57 T 23-04-2016 IPR003760 Basic membrane lipoprotein GO:0005886 RD1_RS09155 5f0ec744817ff49eef71b21b7b15e0ed 318 SUPERFAMILY SSF161098 95 299 1.96E-22 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS09155 5f0ec744817ff49eef71b21b7b15e0ed 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 315 8.3E-31 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS09155 5f0ec744817ff49eef71b21b7b15e0ed 318 PANTHER PTHR30465 8 316 1.5E-86 T 23-04-2016 RD1_RS09155 5f0ec744817ff49eef71b21b7b15e0ed 318 Gene3D G3DSA:1.10.3720.10 92 306 1.4E-23 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS09155 5f0ec744817ff49eef71b21b7b15e0ed 318 PANTHER PTHR30465:SF0 8 316 1.5E-86 T 23-04-2016 RD1_RS01835 04f555c03aa0cba7cb6915276227b270 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 9.4E-5 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS01835 04f555c03aa0cba7cb6915276227b270 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 9.4E-5 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS01835 04f555c03aa0cba7cb6915276227b270 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 53 69 9.4E-5 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS01835 04f555c03aa0cba7cb6915276227b270 147 SMART SM00347 28 129 8.7E-7 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS01835 04f555c03aa0cba7cb6915276227b270 147 SUPERFAMILY SSF46785 8 144 5.15E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS01835 04f555c03aa0cba7cb6915276227b270 147 Gene3D G3DSA:1.10.10.10 2 145 3.6E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS01835 04f555c03aa0cba7cb6915276227b270 147 Pfam PF12802 MarR family 34 93 5.1E-10 T 23-04-2016 RD1_RS04510 ade384216b0f11e752f5fb4305d8d429 493 PANTHER PTHR11751:SF10 103 483 1.5E-76 T 23-04-2016 RD1_RS04510 ade384216b0f11e752f5fb4305d8d429 493 Gene3D G3DSA:3.90.1150.10 347 481 5.5E-17 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS04510 ade384216b0f11e752f5fb4305d8d429 493 SUPERFAMILY SSF46785 12 91 3.77E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04510 ade384216b0f11e752f5fb4305d8d429 493 SUPERFAMILY SSF53383 127 483 4.63E-76 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS04510 ade384216b0f11e752f5fb4305d8d429 493 PANTHER PTHR11751 103 483 1.5E-76 T 23-04-2016 RD1_RS04510 ade384216b0f11e752f5fb4305d8d429 493 Gene3D G3DSA:1.10.10.10 11 82 2.7E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04510 ade384216b0f11e752f5fb4305d8d429 493 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 81 1.7E-12 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS04510 ade384216b0f11e752f5fb4305d8d429 493 Pfam PF00155 Aminotransferase class I and II 163 473 1.8E-14 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS04510 ade384216b0f11e752f5fb4305d8d429 493 Gene3D G3DSA:3.40.640.10 162 346 6.1E-32 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS04510 ade384216b0f11e752f5fb4305d8d429 493 SMART SM00345 22 81 3.1E-10 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RD1_RS15820 e9d8de41d8f5496120042a254f6f169a 105 Pfam PF11994 Protein of unknown function (DUF3489) 6 70 9.1E-20 T 23-04-2016 IPR021880 Protein of unknown function DUF3489 RD1_RS15820 e9d8de41d8f5496120042a254f6f169a 105 Gene3D G3DSA:1.10.10.10 13 82 4.6E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04955 83a5d6092c8e4271a3dea91dfa60af56 425 SUPERFAMILY SSF56935 84 425 1.31E-14 T 23-04-2016 RD1_RS04955 83a5d6092c8e4271a3dea91dfa60af56 425 Gene3D G3DSA:2.40.160.10 94 290 3.0E-8 T 23-04-2016 IPR023614 Porin domain RD1_RS04955 83a5d6092c8e4271a3dea91dfa60af56 425 Gene3D G3DSA:2.40.160.10 326 425 8.1E-4 T 23-04-2016 IPR023614 Porin domain RD1_RS17050 8423c445ef079403ba04660adb2b8c63 310 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 234 251 4.0E-7 T 23-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) RD1_RS17050 8423c445ef079403ba04660adb2b8c63 310 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 37 54 4.0E-7 T 23-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) RD1_RS17050 8423c445ef079403ba04660adb2b8c63 310 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 167 189 4.0E-7 T 23-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) RD1_RS17050 8423c445ef079403ba04660adb2b8c63 310 PANTHER PTHR10907:SF47 12 303 3.2E-100 T 23-04-2016 RD1_RS17050 8423c445ef079403ba04660adb2b8c63 310 Gene3D G3DSA:2.120.10.30 26 305 3.7E-71 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RD1_RS17050 8423c445ef079403ba04660adb2b8c63 310 PANTHER PTHR10907 12 303 3.2E-100 T 23-04-2016 RD1_RS17050 8423c445ef079403ba04660adb2b8c63 310 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 36 289 3.9E-59 T 23-04-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region RD1_RS17050 8423c445ef079403ba04660adb2b8c63 310 SUPERFAMILY SSF63829 12 304 1.07E-66 T 23-04-2016 RD1_RS02935 72c4d190e69b4e8e288b811e97ef2a39 517 PANTHER PTHR30330 392 511 5.9E-168 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RD1_RS02935 72c4d190e69b4e8e288b811e97ef2a39 517 PANTHER PTHR30330 58 373 5.9E-168 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RD1_RS02935 72c4d190e69b4e8e288b811e97ef2a39 517 PANTHER PTHR30330:SF3 392 511 5.9E-168 T 23-04-2016 RD1_RS02935 72c4d190e69b4e8e288b811e97ef2a39 517 PANTHER PTHR30330:SF3 58 373 5.9E-168 T 23-04-2016 RD1_RS02935 72c4d190e69b4e8e288b811e97ef2a39 517 Pfam PF01235 Sodium:alanine symporter family 98 512 1.3E-127 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RD1_RS02935 72c4d190e69b4e8e288b811e97ef2a39 517 TIGRFAM TIGR00835 agcS: amino acid carrier protein 60 502 3.2E-114 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RD1_RS02935 72c4d190e69b4e8e288b811e97ef2a39 517 PRINTS PR00175 Sodium/alanine symporter signature 348 366 2.9E-44 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RD1_RS02935 72c4d190e69b4e8e288b811e97ef2a39 517 PRINTS PR00175 Sodium/alanine symporter signature 258 277 2.9E-44 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RD1_RS02935 72c4d190e69b4e8e288b811e97ef2a39 517 PRINTS PR00175 Sodium/alanine symporter signature 230 248 2.9E-44 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RD1_RS02935 72c4d190e69b4e8e288b811e97ef2a39 517 PRINTS PR00175 Sodium/alanine symporter signature 472 492 2.9E-44 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RD1_RS02935 72c4d190e69b4e8e288b811e97ef2a39 517 PRINTS PR00175 Sodium/alanine symporter signature 411 433 2.9E-44 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RD1_RS02935 72c4d190e69b4e8e288b811e97ef2a39 517 PRINTS PR00175 Sodium/alanine symporter signature 132 154 2.9E-44 T 23-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RD1_RS16635 e732785376220368fb7531579342326e 241 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS16635 e732785376220368fb7531579342326e 241 PANTHER PTHR24322:SF485 147 178 3.8E-43 T 23-04-2016 RD1_RS16635 e732785376220368fb7531579342326e 241 PANTHER PTHR24322:SF485 9 131 3.8E-43 T 23-04-2016 RD1_RS16635 e732785376220368fb7531579342326e 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 5.9E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS16635 e732785376220368fb7531579342326e 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 5.9E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS16635 e732785376220368fb7531579342326e 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 5.9E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS16635 e732785376220368fb7531579342326e 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 5.9E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS16635 e732785376220368fb7531579342326e 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 5.9E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS16635 e732785376220368fb7531579342326e 241 PANTHER PTHR24322 147 178 3.8E-43 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS16635 e732785376220368fb7531579342326e 241 PANTHER PTHR24322 9 131 3.8E-43 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS16635 e732785376220368fb7531579342326e 241 Gene3D G3DSA:3.40.50.720 5 222 2.6E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS16635 e732785376220368fb7531579342326e 241 Pfam PF00106 short chain dehydrogenase 7 190 5.5E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS16635 e732785376220368fb7531579342326e 241 SUPERFAMILY SSF51735 6 225 1.17E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS14260 5c0babf74da0a655ebddae3e6f59d201 202 Gene3D G3DSA:1.10.10.60 4 45 8.0E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS14260 5c0babf74da0a655ebddae3e6f59d201 202 Gene3D G3DSA:1.10.357.10 72 200 1.1E-50 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RD1_RS14260 5c0babf74da0a655ebddae3e6f59d201 202 Gene3D G3DSA:1.10.10.60 46 71 7.3E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS14260 5c0babf74da0a655ebddae3e6f59d201 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 1.0E-13 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS14260 5c0babf74da0a655ebddae3e6f59d201 202 SUPERFAMILY SSF46689 5 87 8.72E-19 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS14260 5c0babf74da0a655ebddae3e6f59d201 202 SUPERFAMILY SSF48498 81 200 7.59E-40 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RD1_RS14260 5c0babf74da0a655ebddae3e6f59d201 202 PANTHER PTHR30055:SF53 1 167 5.1E-44 T 23-04-2016 RD1_RS14260 5c0babf74da0a655ebddae3e6f59d201 202 PANTHER PTHR30055 1 167 5.1E-44 T 23-04-2016 RD1_RS14260 5c0babf74da0a655ebddae3e6f59d201 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 9.7E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS14260 5c0babf74da0a655ebddae3e6f59d201 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 9.7E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS14260 5c0babf74da0a655ebddae3e6f59d201 202 Pfam PF08362 YcdC-like protein, C-terminal region 63 199 9.9E-49 T 23-04-2016 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 RD1_RS10545 ce02141e39c995c3bf90223cf2ca2d93 160 Pfam PF05163 DinB family 1 157 7.1E-28 T 23-04-2016 IPR007837 DNA damage-inducible protein DinB RD1_RS10545 ce02141e39c995c3bf90223cf2ca2d93 160 Gene3D G3DSA:1.20.120.450 1 158 1.9E-29 T 23-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase RD1_RS10545 ce02141e39c995c3bf90223cf2ca2d93 160 SUPERFAMILY SSF109854 1 141 1.76E-34 T 23-04-2016 RD1_RS01270 36a144ad290b6d3624310f9ca470de9e 289 PANTHER PTHR30433 1 289 1.4E-110 T 23-04-2016 RD1_RS01270 36a144ad290b6d3624310f9ca470de9e 289 PANTHER PTHR30433:SF4 1 289 1.4E-110 T 23-04-2016 IPR022522 Flagellar motor stator, MotA RD1_RS01270 36a144ad290b6d3624310f9ca470de9e 289 Pfam PF01618 MotA/TolQ/ExbB proton channel family 135 233 2.7E-13 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RD1_RS01270 36a144ad290b6d3624310f9ca470de9e 289 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 282 1.2E-112 T 23-04-2016 IPR022522 Flagellar motor stator, MotA RD1_RS01270 36a144ad290b6d3624310f9ca470de9e 289 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 206 223 - T 23-04-2016 IPR000540 Flagellar motor protein MotA, conserved site RD1_RS17210 6ffef9c84563d0d41d2ae3d1b27d8432 282 PANTHER PTHR24322:SF456 43 172 2.5E-38 T 23-04-2016 RD1_RS17210 6ffef9c84563d0d41d2ae3d1b27d8432 282 PANTHER PTHR24322:SF456 188 219 2.5E-38 T 23-04-2016 RD1_RS17210 6ffef9c84563d0d41d2ae3d1b27d8432 282 SUPERFAMILY SSF51735 38 280 1.13E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17210 6ffef9c84563d0d41d2ae3d1b27d8432 282 Gene3D G3DSA:3.40.50.720 36 280 3.7E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17210 6ffef9c84563d0d41d2ae3d1b27d8432 282 PANTHER PTHR24322 43 172 2.5E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17210 6ffef9c84563d0d41d2ae3d1b27d8432 282 PANTHER PTHR24322 188 219 2.5E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17210 6ffef9c84563d0d41d2ae3d1b27d8432 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 243 263 1.2E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17210 6ffef9c84563d0d41d2ae3d1b27d8432 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 40 57 1.2E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17210 6ffef9c84563d0d41d2ae3d1b27d8432 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 117 128 1.2E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17210 6ffef9c84563d0d41d2ae3d1b27d8432 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 226 1.2E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17210 6ffef9c84563d0d41d2ae3d1b27d8432 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 207 1.2E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17210 6ffef9c84563d0d41d2ae3d1b27d8432 282 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 45 279 9.1E-47 T 23-04-2016 RD1_RS17210 6ffef9c84563d0d41d2ae3d1b27d8432 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 117 128 9.6E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17210 6ffef9c84563d0d41d2ae3d1b27d8432 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 9.6E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS17210 6ffef9c84563d0d41d2ae3d1b27d8432 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 188 207 9.6E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS12120 074b28bc1ed6ad70b2331bc461a0b0eb 334 SUPERFAMILY SSF46689 225 276 3.67E-9 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS12120 074b28bc1ed6ad70b2331bc461a0b0eb 334 Pfam PF12833 Helix-turn-helix domain 248 323 2.5E-25 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS12120 074b28bc1ed6ad70b2331bc461a0b0eb 334 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 279 321 - T 23-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RD1_RS12120 074b28bc1ed6ad70b2331bc461a0b0eb 334 Gene3D G3DSA:1.10.10.60 222 278 1.2E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS12120 074b28bc1ed6ad70b2331bc461a0b0eb 334 Pfam PF01965 DJ-1/PfpI family 21 186 2.1E-17 T 23-04-2016 IPR002818 DJ-1/PfpI RD1_RS12120 074b28bc1ed6ad70b2331bc461a0b0eb 334 SUPERFAMILY SSF46689 278 328 6.27E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS12120 074b28bc1ed6ad70b2331bc461a0b0eb 334 SUPERFAMILY SSF52317 17 206 1.4E-47 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS12120 074b28bc1ed6ad70b2331bc461a0b0eb 334 Gene3D G3DSA:1.10.10.60 279 327 3.1E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS12120 074b28bc1ed6ad70b2331bc461a0b0eb 334 Gene3D G3DSA:3.40.50.880 19 211 1.2E-41 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS12120 074b28bc1ed6ad70b2331bc461a0b0eb 334 SMART SM00342 242 325 4.0E-29 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS12120 074b28bc1ed6ad70b2331bc461a0b0eb 334 PANTHER PTHR11019:SF90 67 333 7.0E-84 T 23-04-2016 RD1_RS12120 074b28bc1ed6ad70b2331bc461a0b0eb 334 PANTHER PTHR11019:SF90 20 41 7.0E-84 T 23-04-2016 RD1_RS12120 074b28bc1ed6ad70b2331bc461a0b0eb 334 PANTHER PTHR11019 67 333 7.0E-84 T 23-04-2016 RD1_RS12120 074b28bc1ed6ad70b2331bc461a0b0eb 334 PANTHER PTHR11019 20 41 7.0E-84 T 23-04-2016 RD1_RS14985 d027e33f8095e8240eb6286fef767ce1 485 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 23-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RD1_RS14985 d027e33f8095e8240eb6286fef767ce1 485 SMART SM00487 21 221 4.7E-62 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD1_RS14985 d027e33f8095e8240eb6286fef767ce1 485 Gene3D G3DSA:3.40.50.300 3 210 7.6E-79 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14985 d027e33f8095e8240eb6286fef767ce1 485 Pfam PF00271 Helicase conserved C-terminal domain 237 347 7.2E-29 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS14985 d027e33f8095e8240eb6286fef767ce1 485 Gene3D G3DSA:3.40.50.300 211 380 4.0E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14985 d027e33f8095e8240eb6286fef767ce1 485 SMART SM00490 266 347 3.2E-34 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS14985 d027e33f8095e8240eb6286fef767ce1 485 Pfam PF00270 DEAD/DEAH box helicase 26 194 2.0E-48 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RD1_RS14985 d027e33f8095e8240eb6286fef767ce1 485 PANTHER PTHR24031 1 462 1.7E-172 T 23-04-2016 RD1_RS14985 d027e33f8095e8240eb6286fef767ce1 485 PANTHER PTHR24031:SF261 1 462 1.7E-172 T 23-04-2016 RD1_RS14985 d027e33f8095e8240eb6286fef767ce1 485 SUPERFAMILY SSF52540 74 368 2.7E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09495 21b11045bb471de559ceae0b4dd41db0 144 PANTHER PTHR34821 1 140 1.5E-20 T 23-04-2016 RD1_RS09495 21b11045bb471de559ceae0b4dd41db0 144 Pfam PF04657 Putative inner membrane exporter, YdcZ 5 140 1.6E-34 T 23-04-2016 IPR006750 Putative inner membrane exporter, YdcZ RD1_RS17740 7f7354acee8036925ccc6f175d50ee51 347 PANTHER PTHR12110:SF14 11 221 8.1E-28 T 23-04-2016 RD1_RS17740 7f7354acee8036925ccc6f175d50ee51 347 PANTHER PTHR12110:SF14 240 291 8.1E-28 T 23-04-2016 RD1_RS17740 7f7354acee8036925ccc6f175d50ee51 347 PANTHER PTHR12110 11 221 8.1E-28 T 23-04-2016 RD1_RS17740 7f7354acee8036925ccc6f175d50ee51 347 PANTHER PTHR12110 240 291 8.1E-28 T 23-04-2016 RD1_RS17740 7f7354acee8036925ccc6f175d50ee51 347 Pfam PF01261 Xylose isomerase-like TIM barrel 45 239 8.3E-13 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS17740 7f7354acee8036925ccc6f175d50ee51 347 SUPERFAMILY SSF51658 26 341 1.16E-21 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS17740 7f7354acee8036925ccc6f175d50ee51 347 Gene3D G3DSA:3.20.20.150 37 218 2.7E-16 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS08735 45958f211ba667689f3bb38968e4b278 148 Pfam PF09361 Phasin protein 24 116 1.4E-5 T 23-04-2016 IPR018968 Phasin RD1_RS10305 b3283f8eda35ec9872f6f59922bc85de 480 SUPERFAMILY SSF53335 3 480 2.78E-105 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS10305 b3283f8eda35ec9872f6f59922bc85de 480 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 284 290 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RD1_RS10305 b3283f8eda35ec9872f6f59922bc85de 480 PANTHER PTHR30195:SF2 158 385 8.5E-47 T 23-04-2016 RD1_RS10305 b3283f8eda35ec9872f6f59922bc85de 480 PANTHER PTHR30195 158 385 8.5E-47 T 23-04-2016 RD1_RS10305 b3283f8eda35ec9872f6f59922bc85de 480 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 199 213 8.5E-18 T 23-04-2016 RD1_RS10305 b3283f8eda35ec9872f6f59922bc85de 480 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 281 293 8.5E-18 T 23-04-2016 RD1_RS10305 b3283f8eda35ec9872f6f59922bc85de 480 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 175 191 8.5E-18 T 23-04-2016 RD1_RS10305 b3283f8eda35ec9872f6f59922bc85de 480 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 308 332 8.5E-18 T 23-04-2016 RD1_RS10305 b3283f8eda35ec9872f6f59922bc85de 480 Pfam PF02384 N-6 DNA Methylase 152 449 1.1E-58 T 23-04-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 RD1_RS10305 b3283f8eda35ec9872f6f59922bc85de 480 Pfam PF12161 HsdM N-terminal domain 11 141 1.1E-10 T 23-04-2016 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain RD1_RS10305 b3283f8eda35ec9872f6f59922bc85de 480 Gene3D G3DSA:3.40.50.150 177 394 2.3E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS08825 2f45193f5053b60759a0cba8aa6826e9 210 SUPERFAMILY SSF56209 6 205 8.89E-84 T 23-04-2016 IPR004232 Nitrile hydratase alpha /Thiocyanate hydrolase gamma GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 RD1_RS08825 2f45193f5053b60759a0cba8aa6826e9 210 Gene3D G3DSA:3.90.330.10 3 205 2.4E-94 T 23-04-2016 IPR004232 Nitrile hydratase alpha /Thiocyanate hydrolase gamma GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 RD1_RS08825 2f45193f5053b60759a0cba8aa6826e9 210 Pfam PF02979 Nitrile hydratase, alpha chain 19 199 9.6E-87 T 23-04-2016 IPR004232 Nitrile hydratase alpha /Thiocyanate hydrolase gamma GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 RD1_RS08825 2f45193f5053b60759a0cba8aa6826e9 210 ProDom PD007559 HYDRATASE NITRILE ALPHA SUBUNIT LYASE CHAIN METAL-BINDING DIRECT SEQUENCING NITRILASE 22 202 2.0E-83 T 23-04-2016 IPR004232 Nitrile hydratase alpha /Thiocyanate hydrolase gamma GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 RD1_RS08825 2f45193f5053b60759a0cba8aa6826e9 210 PIRSF PIRSF001426 1 208 5.0E-92 T 23-04-2016 IPR023900 Nitrile hydratase alpha subunit /Thiocyanate hydrolase gamma subunit KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 RD1_RS08825 2f45193f5053b60759a0cba8aa6826e9 210 TIGRFAM TIGR01323 nitrile_alph: nitrile hydratase, alpha subunit 18 203 4.4E-95 T 23-04-2016 IPR018141 Nitrile hydratase, alpha subunit GO:0006807|GO:0018822|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 RD1_RS10620 2c0f77a484080a44693c710994160348 133 Pfam PF09278 MerR, DNA binding 45 107 1.3E-17 T 23-04-2016 IPR015358 Transcription regulator MerR, DNA binding RD1_RS10620 2c0f77a484080a44693c710994160348 133 Gene3D G3DSA:1.10.1660.10 55 128 4.0E-28 T 23-04-2016 RD1_RS10620 2c0f77a484080a44693c710994160348 133 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 125 4.0E-47 T 23-04-2016 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 RD1_RS10620 2c0f77a484080a44693c710994160348 133 SMART SM00422 1 69 6.3E-22 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RD1_RS10620 2c0f77a484080a44693c710994160348 133 Pfam PF00376 MerR family regulatory protein 2 38 2.9E-14 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RD1_RS10620 2c0f77a484080a44693c710994160348 133 PANTHER PTHR30204:SF16 1 128 2.3E-52 T 23-04-2016 RD1_RS10620 2c0f77a484080a44693c710994160348 133 PANTHER PTHR30204 1 128 2.3E-52 T 23-04-2016 RD1_RS10620 2c0f77a484080a44693c710994160348 133 SUPERFAMILY SSF46955 1 125 2.42E-34 T 23-04-2016 IPR009061 Putative DNA-binding domain RD1_RS10620 2c0f77a484080a44693c710994160348 133 Gene3D G3DSA:1.10.1660.10 1 54 2.3E-21 T 23-04-2016 RD1_RS00640 4142adbf357efa5ee8f03c7b07c831d0 428 Hamap MF_00352 Light-independent protochlorophyllide reductase subunit N [bchN]. 15 423 52.666 T 23-04-2016 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RD1_RS00640 4142adbf357efa5ee8f03c7b07c831d0 428 PANTHER PTHR39429 28 418 2.5E-82 T 23-04-2016 RD1_RS00640 4142adbf357efa5ee8f03c7b07c831d0 428 PIRSF PIRSF000162 6 428 7.8E-174 T 23-04-2016 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RD1_RS00640 4142adbf357efa5ee8f03c7b07c831d0 428 TIGRFAM TIGR01279 DPOR_bchN: light-independent protochlorophyllide reductase, N subunit 21 422 5.0E-144 T 23-04-2016 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RD1_RS00640 4142adbf357efa5ee8f03c7b07c831d0 428 PANTHER PTHR39429:SF1 28 418 2.5E-82 T 23-04-2016 RD1_RS00640 4142adbf357efa5ee8f03c7b07c831d0 428 Gene3D G3DSA:3.40.50.1980 29 171 1.8E-8 T 23-04-2016 RD1_RS00640 4142adbf357efa5ee8f03c7b07c831d0 428 SUPERFAMILY SSF53807 20 418 9.16E-73 T 23-04-2016 RD1_RS00640 4142adbf357efa5ee8f03c7b07c831d0 428 Gene3D G3DSA:3.40.50.1980 249 372 2.3E-7 T 23-04-2016 RD1_RS00640 4142adbf357efa5ee8f03c7b07c831d0 428 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 29 374 3.2E-29 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RD1_RS13640 018338090b1ec2f8bd79504f25b5c157 101 Pfam PF11011 Protein of unknown function (DUF2849) 8 91 4.1E-28 T 23-04-2016 IPR021270 Protein of unknown function DUF2849 RD1_RS00410 1f7f8a2cbeeecb3bed742c24617903fe 284 SUPERFAMILY SSF52374 3 281 4.41E-101 T 23-04-2016 RD1_RS00410 1f7f8a2cbeeecb3bed742c24617903fe 284 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 5 279 2.4E-83 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RD1_RS00410 1f7f8a2cbeeecb3bed742c24617903fe 284 Gene3D G3DSA:3.40.50.620 3 176 1.9E-73 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS00410 1f7f8a2cbeeecb3bed742c24617903fe 284 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 28 74 9.1E-8 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RD1_RS00410 1f7f8a2cbeeecb3bed742c24617903fe 284 PANTHER PTHR21299:SF1 1 284 4.3E-115 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RD1_RS00410 1f7f8a2cbeeecb3bed742c24617903fe 284 PANTHER PTHR21299 1 284 4.3E-115 T 23-04-2016 RD1_RS00410 1f7f8a2cbeeecb3bed742c24617903fe 284 Pfam PF02569 Pantoate-beta-alanine ligase 5 278 1.2E-95 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RD1_RS00410 1f7f8a2cbeeecb3bed742c24617903fe 284 Hamap MF_00158 Pantothenate synthetase [panC]. 4 280 37.365 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RD1_RS00410 1f7f8a2cbeeecb3bed742c24617903fe 284 Gene3D G3DSA:3.30.1300.10 177 282 3.1E-23 T 23-04-2016 RD1_RS06750 c7da8343fc4ba027af1136ace3c61778 274 PIRSF PIRSF004976 9 271 3.4E-64 T 23-04-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 RD1_RS06750 c7da8343fc4ba027af1136ace3c61778 274 Gene3D G3DSA:3.40.50.620 31 212 4.9E-20 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS06750 c7da8343fc4ba027af1136ace3c61778 274 PANTHER PTHR11807 17 273 9.6E-84 T 23-04-2016 RD1_RS06750 c7da8343fc4ba027af1136ace3c61778 274 PANTHER PTHR11807:SF16 17 273 9.6E-84 T 23-04-2016 RD1_RS06750 c7da8343fc4ba027af1136ace3c61778 274 Pfam PF01171 PP-loop family 48 205 3.3E-14 T 23-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal RD1_RS06750 c7da8343fc4ba027af1136ace3c61778 274 Hamap MF_01850 tRNA 2-thiocytidine biosynthesis protein TtcA [ttcA]. 16 274 50.561 T 23-04-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 RD1_RS06750 c7da8343fc4ba027af1136ace3c61778 274 SUPERFAMILY SSF52402 34 261 5.45E-50 T 23-04-2016 RD1_RS00260 998f494b7277a15cd18220b6f4991bd3 221 SUPERFAMILY SSF47616 75 217 2.37E-28 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS00260 998f494b7277a15cd18220b6f4991bd3 221 PANTHER PTHR11260:SF286 1 205 5.5E-62 T 23-04-2016 RD1_RS00260 998f494b7277a15cd18220b6f4991bd3 221 Gene3D G3DSA:3.40.30.10 3 91 1.4E-32 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS00260 998f494b7277a15cd18220b6f4991bd3 221 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 77 2.9E-24 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RD1_RS00260 998f494b7277a15cd18220b6f4991bd3 221 SUPERFAMILY SSF52833 2 102 4.95E-27 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS00260 998f494b7277a15cd18220b6f4991bd3 221 Pfam PF14497 Glutathione S-transferase, C-terminal domain 103 201 3.8E-7 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal RD1_RS00260 998f494b7277a15cd18220b6f4991bd3 221 Gene3D G3DSA:1.20.1050.10 92 217 2.9E-39 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS00260 998f494b7277a15cd18220b6f4991bd3 221 PANTHER PTHR11260 1 205 5.5E-62 T 23-04-2016 RD1_RS09170 cd413c5703334611198554bcb6cff5d2 355 Gene3D G3DSA:3.40.50.10180 3 184 4.6E-50 T 23-04-2016 RD1_RS09170 cd413c5703334611198554bcb6cff5d2 355 PANTHER PTHR12227:SF0 25 353 1.9E-50 T 23-04-2016 RD1_RS09170 cd413c5703334611198554bcb6cff5d2 355 PANTHER PTHR12227 25 353 1.9E-50 T 23-04-2016 RD1_RS09170 cd413c5703334611198554bcb6cff5d2 355 Pfam PF13660 Domain of unknown function (DUF4147) 3 199 2.1E-43 T 23-04-2016 IPR025286 MOFRL-associated domain RD1_RS09170 cd413c5703334611198554bcb6cff5d2 355 Pfam PF05161 MOFRL family 250 348 5.5E-28 T 23-04-2016 IPR007835 MOFRL domain RD1_RS09170 cd413c5703334611198554bcb6cff5d2 355 SUPERFAMILY SSF82544 7 353 4.58E-89 T 23-04-2016 RD1_RS09170 cd413c5703334611198554bcb6cff5d2 355 Gene3D G3DSA:3.40.1480.10 194 353 4.2E-40 T 23-04-2016 IPR007835 MOFRL domain RD1_RS11070 8c5843467a2c5a076c662af37c6fd4d4 276 PANTHER PTHR30193:SF32 10 276 7.3E-66 T 23-04-2016 RD1_RS11070 8c5843467a2c5a076c662af37c6fd4d4 276 PANTHER PTHR30193 10 276 7.3E-66 T 23-04-2016 RD1_RS11070 8c5843467a2c5a076c662af37c6fd4d4 276 SUPERFAMILY SSF161098 9 268 8.78E-48 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11070 8c5843467a2c5a076c662af37c6fd4d4 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 263 2.5E-10 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11070 8c5843467a2c5a076c662af37c6fd4d4 276 Gene3D G3DSA:1.10.3720.10 8 263 3.0E-42 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04165 096018bf0396f7d4989d4350f5ddfa02 364 PIRSF PIRSF028101 2 357 1.0E-88 T 23-04-2016 IPR008311 Uncharacterised conserved protein UCP028101 RD1_RS04165 096018bf0396f7d4989d4350f5ddfa02 364 Pfam PF07433 Protein of unknown function (DUF1513) 57 355 1.1E-106 T 23-04-2016 IPR008311 Uncharacterised conserved protein UCP028101 RD1_RS04165 096018bf0396f7d4989d4350f5ddfa02 364 SUPERFAMILY SSF69322 32 325 1.23E-10 T 23-04-2016 RD1_RS04165 096018bf0396f7d4989d4350f5ddfa02 364 Gene3D G3DSA:2.130.10.10 59 316 1.8E-9 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RD1_RS04465 ffbd825c1be0a447e38a572ac7a8d3fb 343 SUPERFAMILY SSF51971 271 330 5.3E-21 T 23-04-2016 RD1_RS04465 ffbd825c1be0a447e38a572ac7a8d3fb 343 SUPERFAMILY SSF51971 2 213 5.3E-21 T 23-04-2016 RD1_RS04465 ffbd825c1be0a447e38a572ac7a8d3fb 343 Pfam PF01266 FAD dependent oxidoreductase 3 325 9.0E-34 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS04465 ffbd825c1be0a447e38a572ac7a8d3fb 343 PANTHER PTHR13847 1 334 3.0E-18 T 23-04-2016 RD1_RS04465 ffbd825c1be0a447e38a572ac7a8d3fb 343 PANTHER PTHR13847:SF180 1 334 3.0E-18 T 23-04-2016 RD1_RS04465 ffbd825c1be0a447e38a572ac7a8d3fb 343 SUPERFAMILY SSF54373 203 283 3.4E-13 T 23-04-2016 RD1_RS04465 ffbd825c1be0a447e38a572ac7a8d3fb 343 Gene3D G3DSA:3.50.50.60 286 333 1.5E-23 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS04465 ffbd825c1be0a447e38a572ac7a8d3fb 343 Gene3D G3DSA:3.50.50.60 1 84 1.5E-23 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS04465 ffbd825c1be0a447e38a572ac7a8d3fb 343 Gene3D G3DSA:3.50.50.60 139 185 1.5E-23 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS04465 ffbd825c1be0a447e38a572ac7a8d3fb 343 Gene3D G3DSA:3.30.9.10 186 283 1.7E-9 T 23-04-2016 RD1_RS01975 98f95af3ef577edb1b121acc0720389a 187 SUPERFAMILY SSF58014 27 126 1.7E-25 T 23-04-2016 RD1_RS01975 98f95af3ef577edb1b121acc0720389a 187 Gene3D G3DSA:3.90.20.20 26 125 8.4E-28 T 23-04-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil RD1_RS01975 98f95af3ef577edb1b121acc0720389a 187 PANTHER PTHR21237 11 186 1.9E-55 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RD1_RS01975 98f95af3ef577edb1b121acc0720389a 187 Hamap MF_01151 Protein GrpE [grpE]. 5 183 19.648 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RD1_RS01975 98f95af3ef577edb1b121acc0720389a 187 PRINTS PR00773 GrpE protein signature 50 66 1.0E-24 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RD1_RS01975 98f95af3ef577edb1b121acc0720389a 187 PRINTS PR00773 GrpE protein signature 135 150 1.0E-24 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RD1_RS01975 98f95af3ef577edb1b121acc0720389a 187 PRINTS PR00773 GrpE protein signature 78 93 1.0E-24 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RD1_RS01975 98f95af3ef577edb1b121acc0720389a 187 PRINTS PR00773 GrpE protein signature 162 181 1.0E-24 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RD1_RS01975 98f95af3ef577edb1b121acc0720389a 187 Gene3D G3DSA:2.30.22.10 127 184 4.5E-20 T 23-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 RD1_RS01975 98f95af3ef577edb1b121acc0720389a 187 ProSitePatterns PS01071 grpE protein signature. 138 181 - T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RD1_RS01975 98f95af3ef577edb1b121acc0720389a 187 SUPERFAMILY SSF51064 131 183 7.45E-15 T 23-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 RD1_RS01975 98f95af3ef577edb1b121acc0720389a 187 Pfam PF01025 GrpE 22 182 4.4E-47 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RD1_RS06180 cbd225512ba229b9a0da706cd93b4d84 305 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 294 5.5E-85 T 23-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RD1_RS06180 cbd225512ba229b9a0da706cd93b4d84 305 SUPERFAMILY SSF53328 1 204 6.15E-65 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RD1_RS06180 cbd225512ba229b9a0da706cd93b4d84 305 SUPERFAMILY SSF50486 202 300 1.57E-27 T 23-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 RD1_RS06180 cbd225512ba229b9a0da706cd93b4d84 305 Pfam PF00551 Formyl transferase 1 179 3.0E-42 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RD1_RS06180 cbd225512ba229b9a0da706cd93b4d84 305 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 296 36.087 T 23-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RD1_RS06180 cbd225512ba229b9a0da706cd93b4d84 305 Gene3D G3DSA:3.40.50.170 1 202 3.5E-73 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RD1_RS06180 cbd225512ba229b9a0da706cd93b4d84 305 Gene3D G3DSA:3.10.25.10 204 301 2.5E-28 T 23-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RD1_RS06180 cbd225512ba229b9a0da706cd93b4d84 305 PANTHER PTHR11138 1 298 6.1E-113 T 23-04-2016 RD1_RS06180 cbd225512ba229b9a0da706cd93b4d84 305 Pfam PF02911 Formyl transferase, C-terminal domain 201 293 2.1E-24 T 23-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RD1_RS06180 cbd225512ba229b9a0da706cd93b4d84 305 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 132 155 - T 23-04-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 SUPERFAMILY SSF101790 901 997 3.6E-18 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 Pfam PF12831 FAD dependent oxidoreductase 171 228 8.7E-12 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 Gene3D G3DSA:3.30.1360.120 763 857 2.8E-27 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 Gene3D G3DSA:3.30.1360.120 610 668 2.8E-27 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 16 101 6.4E-24 T 23-04-2016 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 PIRSF PIRSF037980 1 999 0.0 T 23-04-2016 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 PANTHER PTHR13847:SF189 610 922 3.1E-74 T 23-04-2016 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 PANTHER PTHR13847:SF189 119 226 3.1E-74 T 23-04-2016 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 SUPERFAMILY SSF51905 160 480 9.54E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 Gene3D G3DSA:3.30.70.1400 669 753 6.2E-20 T 23-04-2016 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 PANTHER PTHR13847 610 922 3.1E-74 T 23-04-2016 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 PANTHER PTHR13847 119 226 3.1E-74 T 23-04-2016 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 283 291 1.6E-8 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 171 193 1.6E-8 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 463 482 1.6E-8 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 191 2.7E-7 T 23-04-2016 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 411 427 2.7E-7 T 23-04-2016 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 300 2.7E-7 T 23-04-2016 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 Gene3D G3DSA:3.50.50.60 346 417 4.0E-4 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 Gene3D G3DSA:2.40.30.110 904 999 9.7E-22 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 Pfam PF01571 Aminomethyltransferase folate-binding domain 617 880 2.6E-70 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 887 985 3.5E-16 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 SUPERFAMILY SSF103025 610 895 1.4E-91 T 23-04-2016 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 Gene3D G3DSA:3.50.50.60 169 297 1.1E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 Gene3D G3DSA:3.50.50.60 419 492 1.1E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07870 531e5a3276c4133d6f2634db101c2c9a 1000 TIGRFAM TIGR01372 soxA: sarcosine oxidase, alpha subunit family 5 999 0.0 T 23-04-2016 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 ProSitePatterns PS00163 Fumarate lyases signature. 285 294 - T 23-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 PRINTS PR00149 Fumarate lyase superfamily signature 285 301 9.1E-30 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 PRINTS PR00149 Fumarate lyase superfamily signature 157 175 9.1E-30 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 PRINTS PR00149 Fumarate lyase superfamily signature 112 130 9.1E-30 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 PRINTS PR00149 Fumarate lyase superfamily signature 241 268 9.1E-30 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 PANTHER PTHR11444 10 466 1.0E-227 T 23-04-2016 IPR000362 Fumarate lyase family RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 SUPERFAMILY SSF48557 16 466 4.08E-145 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 Gene3D G3DSA:1.10.275.10 12 116 7.0E-38 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 Pfam PF00206 Lyase 16 310 5.8E-79 T 23-04-2016 IPR022761 Fumarate lyase, N-terminal RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 PRINTS PR00145 Argininosuccinate lyase family signature 320 339 1.1E-68 T 23-04-2016 RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 PRINTS PR00145 Argininosuccinate lyase family signature 111 133 1.1E-68 T 23-04-2016 RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 PRINTS PR00145 Argininosuccinate lyase family signature 241 265 1.1E-68 T 23-04-2016 RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 PRINTS PR00145 Argininosuccinate lyase family signature 203 219 1.1E-68 T 23-04-2016 RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 PRINTS PR00145 Argininosuccinate lyase family signature 285 301 1.1E-68 T 23-04-2016 RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 PRINTS PR00145 Argininosuccinate lyase family signature 152 172 1.1E-68 T 23-04-2016 RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 Pfam PF14698 Argininosuccinate lyase C-terminal 373 442 5.7E-23 T 23-04-2016 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 Hamap MF_00006 Argininosuccinate lyase [argH]. 12 464 41.871 T 23-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 PANTHER PTHR11444:SF3 10 466 1.0E-227 T 23-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 Gene3D G3DSA:1.10.40.30 384 442 1.4E-28 T 23-04-2016 RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 Gene3D G3DSA:1.20.200.10 117 383 3.3E-101 T 23-04-2016 RD1_RS07350 19e233a101799e1093b9a67e07cfee0a 466 TIGRFAM TIGR00838 argH: argininosuccinate lyase 13 464 1.7E-178 T 23-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS19030 aad70b25b32b19685afae145d313728f 205 Pfam PF00106 short chain dehydrogenase 2 119 9.1E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19030 aad70b25b32b19685afae145d313728f 205 PANTHER PTHR24322 7 60 4.1E-13 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19030 aad70b25b32b19685afae145d313728f 205 PANTHER PTHR24322 76 94 4.1E-13 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19030 aad70b25b32b19685afae145d313728f 205 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 95 2.6E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19030 aad70b25b32b19685afae145d313728f 205 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 3 14 2.6E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19030 aad70b25b32b19685afae145d313728f 205 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 56 64 2.6E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19030 aad70b25b32b19685afae145d313728f 205 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 14 6.2E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19030 aad70b25b32b19685afae145d313728f 205 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 95 6.2E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19030 aad70b25b32b19685afae145d313728f 205 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 50 66 6.2E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS19030 aad70b25b32b19685afae145d313728f 205 SUPERFAMILY SSF51735 3 143 1.24E-24 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19030 aad70b25b32b19685afae145d313728f 205 Gene3D G3DSA:3.40.50.720 3 134 8.2E-25 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS12405 8f72e399bd66fbec85a05171cf1e12b8 347 PANTHER PTHR11601 2 328 2.5E-83 T 23-04-2016 RD1_RS12405 8f72e399bd66fbec85a05171cf1e12b8 347 PANTHER PTHR11601:SF20 2 328 2.5E-83 T 23-04-2016 RD1_RS12405 8f72e399bd66fbec85a05171cf1e12b8 347 SUPERFAMILY SSF53383 3 335 4.68E-66 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS12405 8f72e399bd66fbec85a05171cf1e12b8 347 PIRSF PIRSF005572 1 346 6.4E-87 T 23-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RD1_RS12405 8f72e399bd66fbec85a05171cf1e12b8 347 Pfam PF00266 Aminotransferase class-V 4 80 9.1E-13 T 23-04-2016 IPR000192 Aminotransferase class V domain RD1_RS12405 8f72e399bd66fbec85a05171cf1e12b8 347 Pfam PF00266 Aminotransferase class-V 136 330 1.6E-23 T 23-04-2016 IPR000192 Aminotransferase class V domain RD1_RS12405 8f72e399bd66fbec85a05171cf1e12b8 347 Gene3D G3DSA:3.90.1150.10 212 335 3.5E-37 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS12405 8f72e399bd66fbec85a05171cf1e12b8 347 Gene3D G3DSA:3.40.640.10 16 211 4.1E-38 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS01105 b14945849e86a610dcfb013aaaf4d1c7 413 SUPERFAMILY SSF54373 270 353 3.01E-8 T 23-04-2016 RD1_RS01105 b14945849e86a610dcfb013aaaf4d1c7 413 PANTHER PTHR13847:SF216 108 411 3.5E-63 T 23-04-2016 RD1_RS01105 b14945849e86a610dcfb013aaaf4d1c7 413 Gene3D G3DSA:3.50.50.60 355 412 4.9E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS01105 b14945849e86a610dcfb013aaaf4d1c7 413 Gene3D G3DSA:3.50.50.60 4 59 4.9E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS01105 b14945849e86a610dcfb013aaaf4d1c7 413 Gene3D G3DSA:3.50.50.60 109 131 4.9E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS01105 b14945849e86a610dcfb013aaaf4d1c7 413 Gene3D G3DSA:3.50.50.60 187 267 4.9E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS01105 b14945849e86a610dcfb013aaaf4d1c7 413 PANTHER PTHR13847 108 411 3.5E-63 T 23-04-2016 RD1_RS01105 b14945849e86a610dcfb013aaaf4d1c7 413 PANTHER PTHR13847:SF216 3 61 3.5E-63 T 23-04-2016 RD1_RS01105 b14945849e86a610dcfb013aaaf4d1c7 413 SUPERFAMILY SSF51905 3 55 3.75E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS01105 b14945849e86a610dcfb013aaaf4d1c7 413 SUPERFAMILY SSF51905 108 268 3.75E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS01105 b14945849e86a610dcfb013aaaf4d1c7 413 SUPERFAMILY SSF51905 355 411 3.75E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS01105 b14945849e86a610dcfb013aaaf4d1c7 413 PANTHER PTHR13847 3 61 3.5E-63 T 23-04-2016 RD1_RS01105 b14945849e86a610dcfb013aaaf4d1c7 413 Pfam PF01266 FAD dependent oxidoreductase 5 391 9.4E-49 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS07495 f715634e259c4606885765b64c8e229a 344 PIRSF PIRSF021494 2 344 4.0E-163 T 23-04-2016 IPR016790 Thiol ester hydratase, Rv0216, predicted KEGG: 00630+4.2.1.148|KEGG: 00660+4.2.1.148|KEGG: 00720+4.2.1.148|MetaCyc: PWY-5741|MetaCyc: PWY-5744|MetaCyc: PWY-6728 RD1_RS07495 f715634e259c4606885765b64c8e229a 344 PANTHER PTHR13078:SF18 8 343 6.4E-112 T 23-04-2016 RD1_RS07495 f715634e259c4606885765b64c8e229a 344 SUPERFAMILY SSF54637 4 153 4.56E-38 T 23-04-2016 IPR029069 HotDog domain RD1_RS07495 f715634e259c4606885765b64c8e229a 344 PANTHER PTHR13078 8 343 6.4E-112 T 23-04-2016 RD1_RS07495 f715634e259c4606885765b64c8e229a 344 Pfam PF13452 N-terminal half of MaoC dehydratase 80 141 3.6E-5 T 23-04-2016 RD1_RS07495 f715634e259c4606885765b64c8e229a 344 Gene3D G3DSA:3.10.129.10 3 153 2.5E-33 T 23-04-2016 IPR029069 HotDog domain RD1_RS07495 f715634e259c4606885765b64c8e229a 344 Gene3D G3DSA:3.10.129.10 185 342 1.7E-27 T 23-04-2016 IPR029069 HotDog domain RD1_RS07495 f715634e259c4606885765b64c8e229a 344 SUPERFAMILY SSF54637 189 342 9.03E-30 T 23-04-2016 IPR029069 HotDog domain RD1_RS10430 7800515a61d67ce770ea4520c333ee53 340 Gene3D G3DSA:3.20.20.330 3 309 1.0E-73 T 23-04-2016 IPR003726 Homocysteine-binding domain RD1_RS10430 7800515a61d67ce770ea4520c333ee53 340 Pfam PF02574 Homocysteine S-methyltransferase 15 294 2.5E-50 T 23-04-2016 IPR003726 Homocysteine-binding domain RD1_RS10430 7800515a61d67ce770ea4520c333ee53 340 PANTHER PTHR21091:SF97 14 312 1.3E-31 T 23-04-2016 RD1_RS10430 7800515a61d67ce770ea4520c333ee53 340 PANTHER PTHR21091 14 312 1.3E-31 T 23-04-2016 RD1_RS10430 7800515a61d67ce770ea4520c333ee53 340 SUPERFAMILY SSF82282 4 330 9.16E-89 T 23-04-2016 IPR003726 Homocysteine-binding domain RD1_RS18835 29907f8e66efe379cb97c864097d93ff 379 Pfam PF05569 BlaR1 peptidase M56 53 277 5.1E-21 T 23-04-2016 IPR008756 Peptidase M56 RD1_RS03325 1b58021e707c2df9e3374255ef6431c5 301 Pfam PF00174 Oxidoreductase molybdopterin binding domain 82 236 1.8E-29 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RD1_RS03325 1b58021e707c2df9e3374255ef6431c5 301 PANTHER PTHR19372:SF1 40 296 3.4E-136 T 23-04-2016 RD1_RS03325 1b58021e707c2df9e3374255ef6431c5 301 Hamap MF_01206 Sulfoxide reductase catalytic subunit YedY [yedY]. 5 301 57.319 T 23-04-2016 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 RD1_RS03325 1b58021e707c2df9e3374255ef6431c5 301 PANTHER PTHR19372 40 296 3.4E-136 T 23-04-2016 RD1_RS03325 1b58021e707c2df9e3374255ef6431c5 301 SUPERFAMILY SSF56524 50 297 2.75E-92 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RD1_RS03325 1b58021e707c2df9e3374255ef6431c5 301 Gene3D G3DSA:3.90.420.10 44 298 8.0E-74 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RD1_RS12030 0d9cba7f2941fc1fb5b34653510ad8eb 163 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 34 163 32.513 T 23-04-2016 IPR023035 Ribosomal protein S9, bacterial/plastid RD1_RS12030 0d9cba7f2941fc1fb5b34653510ad8eb 163 PANTHER PTHR21569:SF1 26 163 7.7E-68 T 23-04-2016 RD1_RS12030 0d9cba7f2941fc1fb5b34653510ad8eb 163 Gene3D G3DSA:3.30.230.10 38 163 8.2E-52 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD1_RS12030 0d9cba7f2941fc1fb5b34653510ad8eb 163 SUPERFAMILY SSF54211 38 163 9.48E-47 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS12030 0d9cba7f2941fc1fb5b34653510ad8eb 163 PANTHER PTHR21569 26 163 7.7E-68 T 23-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RD1_RS12030 0d9cba7f2941fc1fb5b34653510ad8eb 163 ProSitePatterns PS00360 Ribosomal protein S9 signature. 102 120 - T 23-04-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 RD1_RS12030 0d9cba7f2941fc1fb5b34653510ad8eb 163 Pfam PF00380 Ribosomal protein S9/S16 43 163 1.9E-48 T 23-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RD1_RS17100 f445182caf48487b9745f70441451731 393 Pfam PF13533 Biotin-lipoyl like 25 63 3.7E-10 T 23-04-2016 RD1_RS17100 f445182caf48487b9745f70441451731 393 PANTHER PTHR30386 103 393 4.4E-50 T 23-04-2016 RD1_RS17100 f445182caf48487b9745f70441451731 393 PANTHER PTHR30386 7 77 4.4E-50 T 23-04-2016 RD1_RS17100 f445182caf48487b9745f70441451731 393 Gene3D G3DSA:2.40.50.100 241 276 6.2E-13 T 23-04-2016 RD1_RS17100 f445182caf48487b9745f70441451731 393 Gene3D G3DSA:2.40.50.100 25 56 6.2E-13 T 23-04-2016 RD1_RS17100 f445182caf48487b9745f70441451731 393 Pfam PF13437 HlyD family secretion protein 244 345 5.1E-15 T 23-04-2016 RD1_RS17100 f445182caf48487b9745f70441451731 393 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 2 393 4.7E-66 T 23-04-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 RD1_RS17100 f445182caf48487b9745f70441451731 393 SUPERFAMILY SSF51230 21 55 6.0E-6 T 23-04-2016 IPR011053 Single hybrid motif RD1_RS17100 f445182caf48487b9745f70441451731 393 PANTHER PTHR30386:SF8 103 393 4.4E-50 T 23-04-2016 RD1_RS17100 f445182caf48487b9745f70441451731 393 PANTHER PTHR30386:SF8 7 77 4.4E-50 T 23-04-2016 RD1_RS17100 f445182caf48487b9745f70441451731 393 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 34 54 7.2E-34 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS17100 f445182caf48487b9745f70441451731 393 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 256 277 7.2E-34 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS17100 f445182caf48487b9745f70441451731 393 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 289 313 7.2E-34 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS17100 f445182caf48487b9745f70441451731 393 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 357 372 7.2E-34 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS17100 f445182caf48487b9745f70441451731 393 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 372 392 7.2E-34 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS17100 f445182caf48487b9745f70441451731 393 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 313 336 7.2E-34 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RD1_RS14940 9f84ad47b7c205a53bcbed666a68d0df 151 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 142 13.871 T 23-04-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 RD1_RS14940 9f84ad47b7c205a53bcbed666a68d0df 151 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 68 1.4E-19 T 23-04-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 RD1_RS14940 9f84ad47b7c205a53bcbed666a68d0df 151 PANTHER PTHR33162:SF1 1 53 3.5E-16 T 23-04-2016 RD1_RS14940 9f84ad47b7c205a53bcbed666a68d0df 151 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 8.0E-12 T 23-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 RD1_RS14940 9f84ad47b7c205a53bcbed666a68d0df 151 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 8.0E-12 T 23-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 RD1_RS14940 9f84ad47b7c205a53bcbed666a68d0df 151 Pfam PF02416 mttA/Hcf106 family 4 35 1.3E-5 T 23-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RD1_RS14940 9f84ad47b7c205a53bcbed666a68d0df 151 PANTHER PTHR33162 1 53 3.5E-16 T 23-04-2016 RD1_RS08715 9a03d8b8fed353c3aaa5efe3950e9449 251 SUPERFAMILY SSF53474 6 245 9.73E-35 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08715 9a03d8b8fed353c3aaa5efe3950e9449 251 PANTHER PTHR16138 1 246 1.2E-67 T 23-04-2016 RD1_RS08715 9a03d8b8fed353c3aaa5efe3950e9449 251 Pfam PF12697 Alpha/beta hydrolase family 53 184 2.6E-7 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS08715 9a03d8b8fed353c3aaa5efe3950e9449 251 Gene3D G3DSA:3.40.50.1820 179 246 5.1E-27 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08715 9a03d8b8fed353c3aaa5efe3950e9449 251 Gene3D G3DSA:3.40.50.1820 22 132 5.1E-27 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS07980 83b0cbc5370242c89fab1fd944297970 279 Gene3D G3DSA:1.10.3720.10 8 267 1.4E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS07980 83b0cbc5370242c89fab1fd944297970 279 SUPERFAMILY SSF161098 11 279 1.5E-59 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS07980 83b0cbc5370242c89fab1fd944297970 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 271 2.9E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS07980 83b0cbc5370242c89fab1fd944297970 279 PANTHER PTHR32243 1 279 1.4E-69 T 23-04-2016 RD1_RS13750 8d5a63c67baf6ad1ac4b1e9dbcaa2335 298 Pfam PF03466 LysR substrate binding domain 89 283 1.4E-30 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS13750 8d5a63c67baf6ad1ac4b1e9dbcaa2335 298 PANTHER PTHR30537:SF3 1 283 1.1E-52 T 23-04-2016 RD1_RS13750 8d5a63c67baf6ad1ac4b1e9dbcaa2335 298 SUPERFAMILY SSF46785 3 111 6.81E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS13750 8d5a63c67baf6ad1ac4b1e9dbcaa2335 298 Gene3D G3DSA:1.10.10.10 4 86 7.4E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS13750 8d5a63c67baf6ad1ac4b1e9dbcaa2335 298 PANTHER PTHR30537 1 283 1.1E-52 T 23-04-2016 RD1_RS13750 8d5a63c67baf6ad1ac4b1e9dbcaa2335 298 Gene3D G3DSA:3.40.190.10 93 191 1.3E-14 T 23-04-2016 RD1_RS13750 8d5a63c67baf6ad1ac4b1e9dbcaa2335 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 8.5E-13 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS13750 8d5a63c67baf6ad1ac4b1e9dbcaa2335 298 SUPERFAMILY SSF53850 91 290 1.32E-35 T 23-04-2016 RD1_RS10725 06edf0e38cae27293ae71cb92bf36d38 604 Pfam PF01103 Surface antigen 306 604 8.8E-37 T 23-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 RD1_RS10725 06edf0e38cae27293ae71cb92bf36d38 604 Gene3D G3DSA:2.40.160.50 362 604 2.7E-19 T 23-04-2016 RD1_RS10725 06edf0e38cae27293ae71cb92bf36d38 604 PANTHER PTHR12815 72 604 1.1E-39 T 23-04-2016 RD1_RS02075 094b611ffc3a96a6536c7ec6c209d851 405 Pfam PF07690 Major Facilitator Superfamily 19 266 1.2E-23 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS02075 094b611ffc3a96a6536c7ec6c209d851 405 SUPERFAMILY SSF103473 11 395 1.57E-45 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS02075 094b611ffc3a96a6536c7ec6c209d851 405 Gene3D G3DSA:1.20.1250.20 228 397 1.8E-13 T 23-04-2016 RD1_RS02075 094b611ffc3a96a6536c7ec6c209d851 405 Gene3D G3DSA:1.20.1250.20 12 194 6.6E-23 T 23-04-2016 RD1_RS02075 094b611ffc3a96a6536c7ec6c209d851 405 PANTHER PTHR11360 11 401 1.6E-16 T 23-04-2016 RD1_RS11140 173ec2b9b7912e696e7a4e709e76bdcd 215 PANTHER PTHR28047 2 204 2.5E-32 T 23-04-2016 RD1_RS11140 173ec2b9b7912e696e7a4e709e76bdcd 215 PANTHER PTHR28047:SF1 2 204 2.5E-32 T 23-04-2016 RD1_RS00490 09d28496db67bf740aff7b81c5c16dbb 491 SUPERFAMILY SSF53807 4 412 4.91E-73 T 23-04-2016 RD1_RS00490 09d28496db67bf740aff7b81c5c16dbb 491 TIGRFAM TIGR02014 BchZ: chlorophyllide reductase subunit Z 2 474 1.9E-247 T 23-04-2016 IPR010244 Chlorophyllide reductase subunit Z GO:0016730|GO:0030494|GO:0055114 KEGG: 00860+1.3.99.35|MetaCyc: PWY-5526|UniPathway: UPA00669 RD1_RS00490 09d28496db67bf740aff7b81c5c16dbb 491 PIRSF PIRSF000163 1 483 8.1E-127 T 23-04-2016 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RD1_RS00490 09d28496db67bf740aff7b81c5c16dbb 491 PANTHER PTHR33712:SF7 2 484 6.6E-68 T 23-04-2016 RD1_RS00490 09d28496db67bf740aff7b81c5c16dbb 491 PANTHER PTHR33712 2 484 6.6E-68 T 23-04-2016 RD1_RS00490 09d28496db67bf740aff7b81c5c16dbb 491 Gene3D G3DSA:3.40.50.1980 12 100 1.5E-4 T 23-04-2016 RD1_RS00490 09d28496db67bf740aff7b81c5c16dbb 491 Gene3D G3DSA:3.40.50.1980 149 251 9.6E-14 T 23-04-2016 RD1_RS00490 09d28496db67bf740aff7b81c5c16dbb 491 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 427 477 7.2E-10 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RD1_RS00490 09d28496db67bf740aff7b81c5c16dbb 491 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 12 397 9.9E-38 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RD1_RS10760 3dd3433513dc82ab699f4f39c0452e41 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 1.4E-27 T 23-04-2016 RD1_RS10760 3dd3433513dc82ab699f4f39c0452e41 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.4E-27 T 23-04-2016 RD1_RS10760 3dd3433513dc82ab699f4f39c0452e41 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 150 165 1.4E-27 T 23-04-2016 RD1_RS10760 3dd3433513dc82ab699f4f39c0452e41 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 1.4E-27 T 23-04-2016 RD1_RS10760 3dd3433513dc82ab699f4f39c0452e41 391 TIGRFAM TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase 1 389 3.4E-201 T 23-04-2016 IPR012733 4-hydroxybenzoate 3-monooxygenase GO:0018659|GO:0043639|GO:0050660|GO:0055114 RD1_RS10760 3dd3433513dc82ab699f4f39c0452e41 391 Gene3D G3DSA:3.50.50.60 2 152 4.1E-11 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10760 3dd3433513dc82ab699f4f39c0452e41 391 SUPERFAMILY SSF54373 174 274 1.69E-45 T 23-04-2016 RD1_RS10760 3dd3433513dc82ab699f4f39c0452e41 391 Pfam PF01494 FAD binding domain 2 342 9.1E-80 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 RD1_RS10760 3dd3433513dc82ab699f4f39c0452e41 391 SUPERFAMILY SSF51905 273 389 2.24E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10760 3dd3433513dc82ab699f4f39c0452e41 391 SUPERFAMILY SSF51905 1 169 2.24E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS10760 3dd3433513dc82ab699f4f39c0452e41 391 PANTHER PTHR13789:SF192 1 391 1.4E-179 T 23-04-2016 RD1_RS10760 3dd3433513dc82ab699f4f39c0452e41 391 Gene3D G3DSA:3.30.9.10 153 298 4.4E-65 T 23-04-2016 RD1_RS10760 3dd3433513dc82ab699f4f39c0452e41 391 PANTHER PTHR13789 1 391 1.4E-179 T 23-04-2016 RD1_RS09715 fe0173bd6b3d5915039cfa8aafdf8875 281 Pfam PF13432 Tetratricopeptide repeat 163 220 8.8E-7 T 23-04-2016 RD1_RS09715 fe0173bd6b3d5915039cfa8aafdf8875 281 SUPERFAMILY SSF48452 163 257 4.61E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS09715 fe0173bd6b3d5915039cfa8aafdf8875 281 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 158 273 2.3E-26 T 23-04-2016 IPR014162 Tol-Pal system, YbgF RD1_RS09715 fe0173bd6b3d5915039cfa8aafdf8875 281 Gene3D G3DSA:1.25.40.10 162 253 1.1E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS18585 e083bee6130aed90d7a37ab1d052d232 230 Gene3D G3DSA:3.40.190.10 3 134 1.0E-26 T 23-04-2016 RD1_RS18585 e083bee6130aed90d7a37ab1d052d232 230 Gene3D G3DSA:3.40.190.10 135 194 6.6E-20 T 23-04-2016 RD1_RS18585 e083bee6130aed90d7a37ab1d052d232 230 SUPERFAMILY SSF53850 2 228 6.95E-50 T 23-04-2016 RD1_RS18585 e083bee6130aed90d7a37ab1d052d232 230 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 3 206 4.8E-53 T 23-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 RD1_RS18585 e083bee6130aed90d7a37ab1d052d232 230 PANTHER PTHR21403 3 230 4.1E-55 T 23-04-2016 IPR001348 ATP phosphoribosyltransferase HisG GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 RD1_RS18585 e083bee6130aed90d7a37ab1d052d232 230 Pfam PF01634 ATP phosphoribosyltransferase 55 229 1.6E-34 T 23-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 RD1_RS18585 e083bee6130aed90d7a37ab1d052d232 230 PANTHER PTHR21403:SF0 3 230 4.1E-55 T 23-04-2016 RD1_RS07905 217dd47f77af20d2b0010b6052457429 104 PANTHER PTHR35024 4 104 2.4E-12 T 23-04-2016 RD1_RS07905 217dd47f77af20d2b0010b6052457429 104 PANTHER PTHR35024:SF2 4 104 2.4E-12 T 23-04-2016 RD1_RS07905 217dd47f77af20d2b0010b6052457429 104 Pfam PF04519 Polymer-forming cytoskeletal 4 99 1.6E-20 T 23-04-2016 IPR007607 Protein of unknown function DUF583 RD1_RS10130 aa8478bffe8ba2eeac4cd54274997200 97 Pfam PF13467 Ribbon-helix-helix domain 16 81 3.4E-22 T 23-04-2016 IPR027373 Ribbon-helix-helix domain RD1_RS04545 3522dad22d88497160d5e99cd2b9ccce 350 PANTHER PTHR19353:SF27 25 348 2.4E-88 T 23-04-2016 RD1_RS04545 3522dad22d88497160d5e99cd2b9ccce 350 Pfam PF00487 Fatty acid desaturase 67 318 1.4E-32 T 23-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 RD1_RS04545 3522dad22d88497160d5e99cd2b9ccce 350 PANTHER PTHR19353 25 348 2.4E-88 T 23-04-2016 RD1_RS02110 f29a4924ce038a2731426331160df1c6 227 SUPERFAMILY SSF53448 5 222 1.46E-36 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS02110 f29a4924ce038a2731426331160df1c6 227 Pfam PF12804 MobA-like NTP transferase domain 7 125 1.8E-10 T 23-04-2016 IPR025877 MobA-like NTP transferase RD1_RS02110 f29a4924ce038a2731426331160df1c6 227 PANTHER PTHR22572:SF15 4 222 1.1E-24 T 23-04-2016 RD1_RS02110 f29a4924ce038a2731426331160df1c6 227 PANTHER PTHR22572 4 222 1.1E-24 T 23-04-2016 RD1_RS02110 f29a4924ce038a2731426331160df1c6 227 Gene3D G3DSA:3.90.550.10 5 223 1.0E-35 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS11740 b2587d2fc83e40e0c1bc2e4beb692498 218 PANTHER PTHR30070 1 218 1.7E-50 T 23-04-2016 RD1_RS11740 b2587d2fc83e40e0c1bc2e4beb692498 218 Pfam PF03379 CcmB protein 2 215 8.5E-83 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS11740 b2587d2fc83e40e0c1bc2e4beb692498 218 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 4 214 2.7E-82 T 23-04-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria RD1_RS11740 b2587d2fc83e40e0c1bc2e4beb692498 218 PIRSF PIRSF002764 1 218 2.6E-73 T 23-04-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria RD1_RS11740 b2587d2fc83e40e0c1bc2e4beb692498 218 PANTHER PTHR30070:SF1 1 218 1.7E-50 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS11740 b2587d2fc83e40e0c1bc2e4beb692498 218 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 74 97 2.1E-66 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS11740 b2587d2fc83e40e0c1bc2e4beb692498 218 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 25 46 2.1E-66 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS11740 b2587d2fc83e40e0c1bc2e4beb692498 218 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 191 214 2.1E-66 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS11740 b2587d2fc83e40e0c1bc2e4beb692498 218 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 154 173 2.1E-66 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS11740 b2587d2fc83e40e0c1bc2e4beb692498 218 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 51 68 2.1E-66 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS11740 b2587d2fc83e40e0c1bc2e4beb692498 218 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 99 117 2.1E-66 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RD1_RS04080 47050aff1476f3202535624f64ec1e25 274 Pfam PF00756 Putative esterase 21 262 1.4E-48 T 23-04-2016 IPR000801 Putative esterase RD1_RS04080 47050aff1476f3202535624f64ec1e25 274 Gene3D G3DSA:3.40.50.1820 1 273 8.7E-71 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS04080 47050aff1476f3202535624f64ec1e25 274 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 2 273 4.8E-126 T 23-04-2016 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801 RD1_RS04080 47050aff1476f3202535624f64ec1e25 274 SUPERFAMILY SSF53474 1 273 5.94E-82 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS04080 47050aff1476f3202535624f64ec1e25 274 PANTHER PTHR10061 1 274 2.1E-150 T 23-04-2016 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801 RD1_RS19245 7251bafaa9a7a2c6d3a30bfb532c53a9 563 SUPERFAMILY SSF53756 288 535 2.64E-7 T 23-04-2016 RD1_RS19245 7251bafaa9a7a2c6d3a30bfb532c53a9 563 Gene3D G3DSA:1.25.40.10 37 81 1.2E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS19245 7251bafaa9a7a2c6d3a30bfb532c53a9 563 Gene3D G3DSA:1.25.40.10 442 456 1.2E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS19245 7251bafaa9a7a2c6d3a30bfb532c53a9 563 SUPERFAMILY SSF48452 35 82 9.05E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS03875 0caa3e9201c820963a2e3e59d8d925f4 313 Pfam PF01515 Phosphate acetyl/butaryl transferase 90 304 3.4E-33 T 23-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RD1_RS03875 0caa3e9201c820963a2e3e59d8d925f4 313 Gene3D G3DSA:3.40.50.10750 122 281 4.2E-34 T 23-04-2016 RD1_RS03875 0caa3e9201c820963a2e3e59d8d925f4 313 SUPERFAMILY SSF53659 23 306 4.8E-44 T 23-04-2016 RD1_RS03875 0caa3e9201c820963a2e3e59d8d925f4 313 PIRSF PIRSF000428 10 312 3.4E-58 T 23-04-2016 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RD1_RS17550 cd230b2cbb32cfa6b072f862314c8a37 476 PANTHER PTHR21248 10 476 5.5E-99 T 23-04-2016 RD1_RS17550 cd230b2cbb32cfa6b072f862314c8a37 476 SUPERFAMILY SSF56024 268 460 8.07E-41 T 23-04-2016 RD1_RS17550 cd230b2cbb32cfa6b072f862314c8a37 476 Pfam PF13396 Phospholipase_D-nuclease N-terminal 14 52 9.5E-7 T 23-04-2016 IPR027379 Cardiolipin synthase N-terminal RD1_RS17550 cd230b2cbb32cfa6b072f862314c8a37 476 SUPERFAMILY SSF56024 98 305 1.16E-42 T 23-04-2016 RD1_RS17550 cd230b2cbb32cfa6b072f862314c8a37 476 Gene3D G3DSA:3.30.870.10 105 286 2.1E-35 T 23-04-2016 RD1_RS17550 cd230b2cbb32cfa6b072f862314c8a37 476 SMART SM00155 214 241 1.9 T 23-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RD1_RS17550 cd230b2cbb32cfa6b072f862314c8a37 476 SMART SM00155 389 416 1.1E-4 T 23-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RD1_RS17550 cd230b2cbb32cfa6b072f862314c8a37 476 PANTHER PTHR21248:SF9 10 476 5.5E-99 T 23-04-2016 RD1_RS17550 cd230b2cbb32cfa6b072f862314c8a37 476 Pfam PF13091 PLD-like domain 128 262 6.9E-12 T 23-04-2016 IPR025202 Phospholipase D-like domain RD1_RS17550 cd230b2cbb32cfa6b072f862314c8a37 476 Pfam PF13091 PLD-like domain 319 436 2.3E-28 T 23-04-2016 IPR025202 Phospholipase D-like domain RD1_RS17550 cd230b2cbb32cfa6b072f862314c8a37 476 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 3 475 1.5E-102 T 23-04-2016 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 RD1_RS17550 cd230b2cbb32cfa6b072f862314c8a37 476 Gene3D G3DSA:3.30.870.10 315 451 4.9E-34 T 23-04-2016 RD1_RS10415 420ddcdd7ca495cc6fb9e571f186f690 136 PANTHER PTHR12735 7 134 4.9E-35 T 23-04-2016 RD1_RS10415 420ddcdd7ca495cc6fb9e571f186f690 136 PANTHER PTHR12735:SF11 7 134 4.9E-35 T 23-04-2016 RD1_RS10415 420ddcdd7ca495cc6fb9e571f186f690 136 SUPERFAMILY SSF82649 5 133 7.85E-42 T 23-04-2016 RD1_RS10415 420ddcdd7ca495cc6fb9e571f186f690 136 Pfam PF02657 Fe-S metabolism associated domain 10 129 8.5E-41 T 23-04-2016 IPR003808 Fe-S metabolism associated domain, SufE-like UniPathway: UPA00266 RD1_RS10415 420ddcdd7ca495cc6fb9e571f186f690 136 Gene3D G3DSA:3.90.1010.10 3 134 5.0E-48 T 23-04-2016 RD1_RS16235 91a2b715feed7a57e05823f0a4f17948 199 Pfam PF01323 DSBA-like thioredoxin domain 4 195 1.2E-27 T 23-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 RD1_RS16235 91a2b715feed7a57e05823f0a4f17948 199 PANTHER PTHR13887 4 195 3.1E-23 T 23-04-2016 RD1_RS16235 91a2b715feed7a57e05823f0a4f17948 199 Gene3D G3DSA:3.40.30.10 1 197 1.9E-42 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS16235 91a2b715feed7a57e05823f0a4f17948 199 PIRSF PIRSF006386 1 199 9.8E-47 T 23-04-2016 IPR014440 HCCA isomerase/glutathione S-transferase kappa RD1_RS16235 91a2b715feed7a57e05823f0a4f17948 199 SUPERFAMILY SSF52833 4 196 2.42E-34 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS16235 91a2b715feed7a57e05823f0a4f17948 199 PANTHER PTHR13887:SF22 4 195 3.1E-23 T 23-04-2016 RD1_RS03005 96c6a4bd659b6b6abbd97e0b3e7dffcc 423 Gene3D G3DSA:1.10.940.10 6 144 3.8E-20 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RD1_RS03005 96c6a4bd659b6b6abbd97e0b3e7dffcc 423 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 295 306 - T 23-04-2016 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS03005 96c6a4bd659b6b6abbd97e0b3e7dffcc 423 Pfam PF01189 16S rRNA methyltransferase RsmB/F 226 419 1.8E-47 T 23-04-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS03005 96c6a4bd659b6b6abbd97e0b3e7dffcc 423 SUPERFAMILY SSF53335 140 421 7.15E-63 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS03005 96c6a4bd659b6b6abbd97e0b3e7dffcc 423 Pfam PF01029 NusB family 7 125 1.2E-12 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RD1_RS03005 96c6a4bd659b6b6abbd97e0b3e7dffcc 423 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 346 362 8.4E-26 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS03005 96c6a4bd659b6b6abbd97e0b3e7dffcc 423 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 404 421 8.4E-26 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS03005 96c6a4bd659b6b6abbd97e0b3e7dffcc 423 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 296 308 8.4E-26 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS03005 96c6a4bd659b6b6abbd97e0b3e7dffcc 423 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 208 222 8.4E-26 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS03005 96c6a4bd659b6b6abbd97e0b3e7dffcc 423 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 237 247 8.4E-26 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RD1_RS03005 96c6a4bd659b6b6abbd97e0b3e7dffcc 423 PANTHER PTHR22807 202 421 4.1E-69 T 23-04-2016 RD1_RS03005 96c6a4bd659b6b6abbd97e0b3e7dffcc 423 SUPERFAMILY SSF48013 7 144 4.25E-18 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RD1_RS03005 96c6a4bd659b6b6abbd97e0b3e7dffcc 423 Gene3D G3DSA:3.40.50.150 218 421 4.4E-46 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS07730 24f420515d92771ed5a3c7fac754494e 402 PANTHER PTHR24023 1 398 1.1E-30 T 23-04-2016 RD1_RS07730 24f420515d92771ed5a3c7fac754494e 402 Gene3D G3DSA:3.30.1540.10 236 318 1.5E-31 T 23-04-2016 RD1_RS07730 24f420515d92771ed5a3c7fac754494e 402 PANTHER PTHR24023:SF593 1 398 1.1E-30 T 23-04-2016 RD1_RS07730 24f420515d92771ed5a3c7fac754494e 402 Gene3D G3DSA:3.40.50.10540 8 230 2.3E-113 T 23-04-2016 IPR023606 CoA-transferase family III domain RD1_RS07730 24f420515d92771ed5a3c7fac754494e 402 Gene3D G3DSA:3.40.50.10540 319 401 2.3E-113 T 23-04-2016 IPR023606 CoA-transferase family III domain RD1_RS07730 24f420515d92771ed5a3c7fac754494e 402 Pfam PF02515 CoA-transferase family III 11 388 2.0E-132 T 23-04-2016 IPR003673 CoA-transferase family III GO:0003824 RD1_RS07730 24f420515d92771ed5a3c7fac754494e 402 SUPERFAMILY SSF89796 7 401 1.29E-137 T 23-04-2016 IPR023606 CoA-transferase family III domain RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 220 237 2.72E-49 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 144 157 2.72E-49 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 168 196 2.72E-49 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 238 254 2.72E-49 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 324 350 2.72E-49 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 PANTHER PTHR23429 9 486 2.0E-203 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 SUPERFAMILY SSF55347 178 485 1.24E-108 T 23-04-2016 RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 178 184 - T 23-04-2016 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 190 485 8.2E-108 T 23-04-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 PANTHER PTHR23429:SF0 9 486 2.0E-203 T 23-04-2016 RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 10 486 5.4E-167 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 Gene3D G3DSA:3.30.360.10 188 485 1.7E-115 T 23-04-2016 RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 14 188 3.5E-57 T 23-04-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 Gene3D G3DSA:3.40.50.720 9 187 2.1E-61 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 SUPERFAMILY SSF51735 3 191 4.92E-57 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 PIRSF PIRSF000110 1 487 7.4E-165 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RD1_RS12505 c60861cef666b521e93c33b093120b9b 487 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 10 486 79.991 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RD1_RS12105 494f2b7d51cd719177b187d0ebc59896 260 SUPERFAMILY SSF52540 2 249 2.52E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12105 494f2b7d51cd719177b187d0ebc59896 260 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 227 249 9.4E-8 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD1_RS12105 494f2b7d51cd719177b187d0ebc59896 260 Gene3D G3DSA:3.40.50.300 1 247 2.9E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12105 494f2b7d51cd719177b187d0ebc59896 260 Pfam PF00005 ABC transporter 18 175 2.6E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS12105 494f2b7d51cd719177b187d0ebc59896 260 PANTHER PTHR24220:SF525 3 249 4.0E-88 T 23-04-2016 RD1_RS12105 494f2b7d51cd719177b187d0ebc59896 260 SMART SM00382 26 250 7.2E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS12105 494f2b7d51cd719177b187d0ebc59896 260 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS12105 494f2b7d51cd719177b187d0ebc59896 260 PANTHER PTHR24220 3 249 4.0E-88 T 23-04-2016 RD1_RS03790 46fe931b906fc357b24c2d9c1f35a953 292 Gene3D G3DSA:3.40.190.10 82 204 2.7E-9 T 23-04-2016 RD1_RS03790 46fe931b906fc357b24c2d9c1f35a953 292 PANTHER PTHR30126:SF2 1 273 8.5E-43 T 23-04-2016 RD1_RS03790 46fe931b906fc357b24c2d9c1f35a953 292 Pfam PF03466 LysR substrate binding domain 90 262 1.2E-14 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS03790 46fe931b906fc357b24c2d9c1f35a953 292 SUPERFAMILY SSF53850 92 271 2.17E-18 T 23-04-2016 RD1_RS03790 46fe931b906fc357b24c2d9c1f35a953 292 Gene3D G3DSA:1.10.10.10 1 81 1.2E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03790 46fe931b906fc357b24c2d9c1f35a953 292 SUPERFAMILY SSF46785 1 86 7.35E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03790 46fe931b906fc357b24c2d9c1f35a953 292 PANTHER PTHR30126 1 273 8.5E-43 T 23-04-2016 RD1_RS03790 46fe931b906fc357b24c2d9c1f35a953 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 55 6.8E-10 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS03790 46fe931b906fc357b24c2d9c1f35a953 292 Gene3D G3DSA:3.40.190.10 214 258 2.4E-4 T 23-04-2016 RD1_RS03290 2f9abfcbfb40c62215c7221368bcceae 286 SUPERFAMILY SSF53187 5 278 9.1E-88 T 23-04-2016 RD1_RS03290 2f9abfcbfb40c62215c7221368bcceae 286 Pfam PF05013 N-formylglutamate amidohydrolase 17 248 3.8E-70 T 23-04-2016 IPR007709 N-formylglutamate amidohydrolase RD1_RS03290 2f9abfcbfb40c62215c7221368bcceae 286 Gene3D G3DSA:3.40.630.40 4 278 4.4E-96 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RD1_RS05125 489441cf828da850983cd791a59c2d1d 228 PANTHER PTHR23359 11 224 5.6E-77 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS05125 489441cf828da850983cd791a59c2d1d 228 PRINTS PR00094 Adenylate kinase signature 188 202 1.4E-33 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS05125 489441cf828da850983cd791a59c2d1d 228 PRINTS PR00094 Adenylate kinase signature 14 27 1.4E-33 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS05125 489441cf828da850983cd791a59c2d1d 228 PRINTS PR00094 Adenylate kinase signature 42 56 1.4E-33 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS05125 489441cf828da850983cd791a59c2d1d 228 PRINTS PR00094 Adenylate kinase signature 91 107 1.4E-33 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS05125 489441cf828da850983cd791a59c2d1d 228 PRINTS PR00094 Adenylate kinase signature 171 186 1.4E-33 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS05125 489441cf828da850983cd791a59c2d1d 228 SUPERFAMILY SSF52540 11 225 1.74E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05125 489441cf828da850983cd791a59c2d1d 228 TIGRFAM TIGR01351 adk: adenylate kinase 13 223 9.8E-71 T 23-04-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS05125 489441cf828da850983cd791a59c2d1d 228 ProSitePatterns PS00113 Adenylate kinase signature. 91 102 - T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS05125 489441cf828da850983cd791a59c2d1d 228 Pfam PF05191 Adenylate kinase, active site lid 137 173 1.5E-9 T 23-04-2016 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS05125 489441cf828da850983cd791a59c2d1d 228 Pfam PF00406 Adenylate kinase 15 201 1.1E-51 T 23-04-2016 RD1_RS05125 489441cf828da850983cd791a59c2d1d 228 Gene3D G3DSA:3.40.50.300 8 222 2.9E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05125 489441cf828da850983cd791a59c2d1d 228 Hamap MF_00235 Adenylate kinase [adk]. 11 224 43.277 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RD1_RS17280 d543dbccf15bf44059911ca01b593d32 451 PIRSF PIRSF006066 9 451 7.4E-77 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS17280 d543dbccf15bf44059911ca01b593d32 451 PANTHER PTHR33362:SF7 1 451 6.6E-116 T 23-04-2016 RD1_RS17280 d543dbccf15bf44059911ca01b593d32 451 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 15 441 4.9E-90 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS17280 d543dbccf15bf44059911ca01b593d32 451 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 25 446 9.0E-97 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS17280 d543dbccf15bf44059911ca01b593d32 451 PANTHER PTHR33362 1 451 6.6E-116 T 23-04-2016 RD1_RS09035 1b9b3aca21d4d823443a49de6ee2dfea 340 SUPERFAMILY SSF51735 1 183 4.54E-69 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS09035 1b9b3aca21d4d823443a49de6ee2dfea 340 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 178 5.3E-68 T 23-04-2016 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS09035 1b9b3aca21d4d823443a49de6ee2dfea 340 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 328 8.3E-123 T 23-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS09035 1b9b3aca21d4d823443a49de6ee2dfea 340 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 1 330 44.049 T 23-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS09035 1b9b3aca21d4d823443a49de6ee2dfea 340 SUPERFAMILY SSF48179 184 334 1.7E-70 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS09035 1b9b3aca21d4d823443a49de6ee2dfea 340 PANTHER PTHR21371 1 339 2.1E-168 T 23-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS09035 1b9b3aca21d4d823443a49de6ee2dfea 340 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 184 328 8.6E-64 T 23-04-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS09035 1b9b3aca21d4d823443a49de6ee2dfea 340 Gene3D G3DSA:1.10.1040.10 29 327 2.2E-109 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS02170 3c3d512b1625156c4e09c39360cd2dcc 90 Gene3D G3DSA:3.30.70.1060 1 88 1.2E-23 T 23-04-2016 RD1_RS02170 3c3d512b1625156c4e09c39360cd2dcc 90 Pfam PF03795 YCII-related domain 1 86 6.8E-21 T 23-04-2016 IPR005545 YCII-related RD1_RS02170 3c3d512b1625156c4e09c39360cd2dcc 90 PANTHER PTHR33606 1 90 2.9E-13 T 23-04-2016 RD1_RS02170 3c3d512b1625156c4e09c39360cd2dcc 90 SUPERFAMILY SSF54909 2 88 4.56E-21 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS16875 28d3a33f551e1b043c23968bea54461c 166 Pfam PF04224 Protein of unknown function, DUF417 73 163 1.1E-19 T 23-04-2016 IPR007339 Protein of unknown function DUF417 RD1_RS16875 28d3a33f551e1b043c23968bea54461c 166 Pfam PF04224 Protein of unknown function, DUF417 22 71 1.2E-10 T 23-04-2016 IPR007339 Protein of unknown function DUF417 RD1_RS16875 28d3a33f551e1b043c23968bea54461c 166 PANTHER PTHR40106:SF1 6 165 4.3E-24 T 23-04-2016 RD1_RS16875 28d3a33f551e1b043c23968bea54461c 166 PANTHER PTHR40106 6 165 4.3E-24 T 23-04-2016 RD1_RS10840 28d3a33f551e1b043c23968bea54461c 166 Pfam PF04224 Protein of unknown function, DUF417 73 163 1.1E-19 T 23-04-2016 IPR007339 Protein of unknown function DUF417 RD1_RS10840 28d3a33f551e1b043c23968bea54461c 166 Pfam PF04224 Protein of unknown function, DUF417 22 71 1.2E-10 T 23-04-2016 IPR007339 Protein of unknown function DUF417 RD1_RS10840 28d3a33f551e1b043c23968bea54461c 166 PANTHER PTHR40106:SF1 6 165 4.3E-24 T 23-04-2016 RD1_RS10840 28d3a33f551e1b043c23968bea54461c 166 PANTHER PTHR40106 6 165 4.3E-24 T 23-04-2016 RD1_RS05450 e22c66a31c64f4041895e8b426476ebb 192 PANTHER PTHR23026 7 190 4.0E-43 T 23-04-2016 RD1_RS05450 e22c66a31c64f4041895e8b426476ebb 192 Pfam PF00881 Nitroreductase family 14 168 6.2E-15 T 23-04-2016 IPR029479 Nitroreductase RD1_RS05450 e22c66a31c64f4041895e8b426476ebb 192 PANTHER PTHR23026:SF107 7 190 4.0E-43 T 23-04-2016 RD1_RS05450 e22c66a31c64f4041895e8b426476ebb 192 PIRSF PIRSF000232 3 192 5.7E-47 T 23-04-2016 IPR026021 Putative NAD(P)H nitroreductase YdjA-like KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- RD1_RS05450 e22c66a31c64f4041895e8b426476ebb 192 Gene3D G3DSA:3.40.109.10 6 189 2.8E-33 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RD1_RS05450 e22c66a31c64f4041895e8b426476ebb 192 SUPERFAMILY SSF55469 4 190 5.37E-33 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RD1_RS12020 abe3a7d89104676af4b971df48afce5f 450 PANTHER PTHR11806 1 444 6.9E-190 T 23-04-2016 RD1_RS12020 abe3a7d89104676af4b971df48afce5f 450 Pfam PF01134 Glucose inhibited division protein A 5 373 4.4E-105 T 23-04-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 RD1_RS12020 abe3a7d89104676af4b971df48afce5f 450 PANTHER PTHR11806:SF2 1 444 6.9E-190 T 23-04-2016 RD1_RS12020 abe3a7d89104676af4b971df48afce5f 450 Hamap MF_01037 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO [trmFO]. 5 445 33.527 T 23-04-2016 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 RD1_RS12020 abe3a7d89104676af4b971df48afce5f 450 TIGRFAM TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase 3 444 1.1E-161 T 23-04-2016 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 RD1_RS12020 abe3a7d89104676af4b971df48afce5f 450 SUPERFAMILY SSF51905 6 373 3.77E-25 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS12020 abe3a7d89104676af4b971df48afce5f 450 Gene3D G3DSA:3.50.50.60 316 374 2.9E-12 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS12020 abe3a7d89104676af4b971df48afce5f 450 Gene3D G3DSA:3.50.50.60 2 51 2.9E-12 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS12020 abe3a7d89104676af4b971df48afce5f 450 Gene3D G3DSA:3.50.50.60 94 153 2.9E-12 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS02585 c65771b2e9e702935286d894cc108574 326 Gene3D G3DSA:3.40.190.10 121 255 3.5E-19 T 23-04-2016 RD1_RS02585 c65771b2e9e702935286d894cc108574 326 Gene3D G3DSA:3.40.190.10 256 286 7.5E-8 T 23-04-2016 RD1_RS02585 c65771b2e9e702935286d894cc108574 326 Gene3D G3DSA:3.40.190.10 7 117 7.5E-8 T 23-04-2016 RD1_RS02585 c65771b2e9e702935286d894cc108574 326 SUPERFAMILY SSF53850 23 321 1.39E-49 T 23-04-2016 RD1_RS02585 c65771b2e9e702935286d894cc108574 326 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 21 320 2.9E-83 T 23-04-2016 IPR005948 Thiamine ABC transporter periplasmic binding protein GO:0005215|GO:0006810|GO:0015888|GO:0030288|GO:0030975 RD1_RS02585 c65771b2e9e702935286d894cc108574 326 PANTHER PTHR30006 1 325 2.0E-74 T 23-04-2016 RD1_RS02585 c65771b2e9e702935286d894cc108574 326 PANTHER PTHR30006:SF3 1 325 2.0E-74 T 23-04-2016 RD1_RS02585 c65771b2e9e702935286d894cc108574 326 Pfam PF13343 Bacterial extracellular solute-binding protein 72 282 3.1E-12 T 23-04-2016 RD1_RS16065 319b098f1e44726c625fb48f7e32071d 374 Gene3D G3DSA:3.40.47.10 4 204 1.2E-49 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS16065 319b098f1e44726c625fb48f7e32071d 374 PANTHER PTHR34069:SF1 1 25 1.4E-144 T 23-04-2016 RD1_RS16065 319b098f1e44726c625fb48f7e32071d 374 PANTHER PTHR34069:SF1 91 372 1.4E-144 T 23-04-2016 RD1_RS16065 319b098f1e44726c625fb48f7e32071d 374 PANTHER PTHR34069:SF1 50 70 1.4E-144 T 23-04-2016 RD1_RS16065 319b098f1e44726c625fb48f7e32071d 374 PANTHER PTHR34069 1 25 1.4E-144 T 23-04-2016 RD1_RS16065 319b098f1e44726c625fb48f7e32071d 374 PANTHER PTHR34069 91 372 1.4E-144 T 23-04-2016 RD1_RS16065 319b098f1e44726c625fb48f7e32071d 374 PANTHER PTHR34069 50 70 1.4E-144 T 23-04-2016 RD1_RS16065 319b098f1e44726c625fb48f7e32071d 374 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 284 371 2.0E-20 T 23-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RD1_RS16065 319b098f1e44726c625fb48f7e32071d 374 Gene3D G3DSA:3.40.47.10 205 372 2.0E-27 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS16065 319b098f1e44726c625fb48f7e32071d 374 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 150 222 1.1E-21 T 23-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RD1_RS16065 319b098f1e44726c625fb48f7e32071d 374 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 147 163 - T 23-04-2016 IPR018201 Beta-ketoacyl synthase, active site RD1_RS16065 319b098f1e44726c625fb48f7e32071d 374 SUPERFAMILY SSF53901 5 372 3.89E-50 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RD1_RS10090 08130d36f52742fbe5b22fdf5687cc27 329 PANTHER PTHR33376 1 324 8.0E-67 T 23-04-2016 RD1_RS10090 08130d36f52742fbe5b22fdf5687cc27 329 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 32 309 1.7E-58 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS14195 4d75a2a8bd00258d2d183926c6f4befe 197 Hamap MF_00109 Shikimate kinase [aroK]. 20 182 26.699 T 23-04-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS14195 4d75a2a8bd00258d2d183926c6f4befe 197 PANTHER PTHR21087 23 187 1.0E-55 T 23-04-2016 RD1_RS14195 4d75a2a8bd00258d2d183926c6f4befe 197 PRINTS PR01100 Shikimate kinase family signature 47 60 1.9E-21 T 23-04-2016 RD1_RS14195 4d75a2a8bd00258d2d183926c6f4befe 197 PRINTS PR01100 Shikimate kinase family signature 114 131 1.9E-21 T 23-04-2016 RD1_RS14195 4d75a2a8bd00258d2d183926c6f4befe 197 PRINTS PR01100 Shikimate kinase family signature 93 102 1.9E-21 T 23-04-2016 RD1_RS14195 4d75a2a8bd00258d2d183926c6f4befe 197 PRINTS PR01100 Shikimate kinase family signature 23 38 1.9E-21 T 23-04-2016 RD1_RS14195 4d75a2a8bd00258d2d183926c6f4befe 197 PRINTS PR01100 Shikimate kinase family signature 75 83 1.9E-21 T 23-04-2016 RD1_RS14195 4d75a2a8bd00258d2d183926c6f4befe 197 SUPERFAMILY SSF52540 21 184 4.35E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14195 4d75a2a8bd00258d2d183926c6f4befe 197 ProSitePatterns PS01128 Shikimate kinase signature. 76 101 - T 23-04-2016 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS14195 4d75a2a8bd00258d2d183926c6f4befe 197 Pfam PF01202 Shikimate kinase 29 181 5.3E-45 T 23-04-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS14195 4d75a2a8bd00258d2d183926c6f4befe 197 Gene3D G3DSA:3.40.50.300 20 186 3.1E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09260 0a2254bc258b33a3f9e3dbe6a907852a 245 PANTHER PTHR23291:SF42 13 245 3.6E-65 T 23-04-2016 RD1_RS09260 0a2254bc258b33a3f9e3dbe6a907852a 245 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 23 241 2.2E-58 T 23-04-2016 RD1_RS09260 0a2254bc258b33a3f9e3dbe6a907852a 245 PANTHER PTHR23291 13 245 3.6E-65 T 23-04-2016 IPR006214 Bax inhibitor 1-related RD1_RS02350 899020f67f712a7b50abaffe9e36ef38 148 Pfam PF01575 MaoC like domain 26 125 9.0E-19 T 23-04-2016 IPR002539 MaoC-like domain RD1_RS02350 899020f67f712a7b50abaffe9e36ef38 148 SUPERFAMILY SSF54637 10 142 3.98E-27 T 23-04-2016 IPR029069 HotDog domain RD1_RS02350 899020f67f712a7b50abaffe9e36ef38 148 PANTHER PTHR13078 24 141 6.1E-15 T 23-04-2016 RD1_RS02350 899020f67f712a7b50abaffe9e36ef38 148 Gene3D G3DSA:3.10.129.10 5 142 5.1E-30 T 23-04-2016 IPR029069 HotDog domain RD1_RS01960 838fbfb5c83cde01d163df3bb4ba7f86 290 PANTHER PTHR10584 1 287 6.7E-51 T 23-04-2016 RD1_RS01960 838fbfb5c83cde01d163df3bb4ba7f86 290 Pfam PF00294 pfkB family carbohydrate kinase 7 279 2.1E-38 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RD1_RS01960 838fbfb5c83cde01d163df3bb4ba7f86 290 PRINTS PR00990 Ribokinase signature 5 26 1.8E-23 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RD1_RS01960 838fbfb5c83cde01d163df3bb4ba7f86 290 PRINTS PR00990 Ribokinase signature 101 114 1.8E-23 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RD1_RS01960 838fbfb5c83cde01d163df3bb4ba7f86 290 PRINTS PR00990 Ribokinase signature 168 183 1.8E-23 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RD1_RS01960 838fbfb5c83cde01d163df3bb4ba7f86 290 PRINTS PR00990 Ribokinase signature 32 51 1.8E-23 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RD1_RS01960 838fbfb5c83cde01d163df3bb4ba7f86 290 PRINTS PR00990 Ribokinase signature 202 213 1.8E-23 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RD1_RS01960 838fbfb5c83cde01d163df3bb4ba7f86 290 SUPERFAMILY SSF53613 2 286 3.43E-58 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS01960 838fbfb5c83cde01d163df3bb4ba7f86 290 Gene3D G3DSA:3.40.1190.20 2 287 7.1E-65 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS01960 838fbfb5c83cde01d163df3bb4ba7f86 290 PANTHER PTHR10584:SF190 1 287 6.7E-51 T 23-04-2016 RD1_RS03070 524834eb719296d0c61e430e7805bb15 333 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 45 121 3.3E-7 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RD1_RS03070 524834eb719296d0c61e430e7805bb15 333 Gene3D G3DSA:3.40.50.720 35 137 1.1E-17 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03070 524834eb719296d0c61e430e7805bb15 333 PANTHER PTHR22604 40 261 4.7E-31 T 23-04-2016 RD1_RS03070 524834eb719296d0c61e430e7805bb15 333 SUPERFAMILY SSF55347 129 286 6.32E-22 T 23-04-2016 RD1_RS03070 524834eb719296d0c61e430e7805bb15 333 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 209 3.8E-6 T 23-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS03070 524834eb719296d0c61e430e7805bb15 333 SUPERFAMILY SSF51735 3 149 1.34E-21 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03070 524834eb719296d0c61e430e7805bb15 333 Gene3D G3DSA:3.30.360.10 138 330 3.0E-41 T 23-04-2016 RD1_RS04220 9bc5c08c5262aaba6132665b68dceff6 369 PANTHER PTHR34184:SF4 67 366 8.2E-30 T 23-04-2016 RD1_RS04220 9bc5c08c5262aaba6132665b68dceff6 369 PANTHER PTHR34184 67 366 8.2E-30 T 23-04-2016 RD1_RS04220 9bc5c08c5262aaba6132665b68dceff6 369 Pfam PF03773 Predicted permease 77 359 1.9E-28 T 23-04-2016 IPR005524 Predicted permease DUF318 RD1_RS10715 0ab1871b438583939bdb7b2a5968460d 365 Gene3D G3DSA:2.40.50.100 241 289 9.7E-9 T 23-04-2016 RD1_RS10715 0ab1871b438583939bdb7b2a5968460d 365 Gene3D G3DSA:2.40.50.100 350 359 9.7E-9 T 23-04-2016 RD1_RS10715 0ab1871b438583939bdb7b2a5968460d 365 Gene3D G3DSA:2.40.50.140 292 346 1.6E-9 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS10715 0ab1871b438583939bdb7b2a5968460d 365 PANTHER PTHR24220:SF572 5 319 8.0E-146 T 23-04-2016 RD1_RS10715 0ab1871b438583939bdb7b2a5968460d 365 Pfam PF00005 ABC transporter 20 162 8.5E-36 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS10715 0ab1871b438583939bdb7b2a5968460d 365 SMART SM00382 29 213 4.1E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS10715 0ab1871b438583939bdb7b2a5968460d 365 SUPERFAMILY SSF50331 238 361 4.73E-21 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RD1_RS10715 0ab1871b438583939bdb7b2a5968460d 365 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS10715 0ab1871b438583939bdb7b2a5968460d 365 Gene3D G3DSA:3.40.50.300 4 236 3.4E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10715 0ab1871b438583939bdb7b2a5968460d 365 SUPERFAMILY SSF52540 4 243 7.98E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10715 0ab1871b438583939bdb7b2a5968460d 365 PANTHER PTHR24220 5 319 8.0E-146 T 23-04-2016 RD1_RS07580 4567689a49dd5845ad2dad984013c676 212 Gene3D G3DSA:3.40.630.30 1 195 2.1E-47 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS07580 4567689a49dd5845ad2dad984013c676 212 Pfam PF00765 Autoinducer synthase 11 150 4.0E-23 T 23-04-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RD1_RS07580 4567689a49dd5845ad2dad984013c676 212 PRINTS PR01549 Autoinducer synthesis protein signature 64 82 2.0E-12 T 23-04-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RD1_RS07580 4567689a49dd5845ad2dad984013c676 212 PRINTS PR01549 Autoinducer synthesis protein signature 19 38 2.0E-12 T 23-04-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RD1_RS07580 4567689a49dd5845ad2dad984013c676 212 PRINTS PR01549 Autoinducer synthesis protein signature 96 108 2.0E-12 T 23-04-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RD1_RS07580 4567689a49dd5845ad2dad984013c676 212 PRINTS PR01549 Autoinducer synthesis protein signature 136 157 2.0E-12 T 23-04-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RD1_RS07580 4567689a49dd5845ad2dad984013c676 212 PRINTS PR01549 Autoinducer synthesis protein signature 40 62 2.0E-12 T 23-04-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RD1_RS07580 4567689a49dd5845ad2dad984013c676 212 SUPERFAMILY SSF55729 2 184 3.5E-29 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS07580 4567689a49dd5845ad2dad984013c676 212 PANTHER PTHR39322 2 157 2.3E-16 T 23-04-2016 RD1_RS14705 bea02586c7db3d4dca4faefdd08efae3 612 PANTHER PTHR10657 238 509 1.6E-27 T 23-04-2016 RD1_RS14705 bea02586c7db3d4dca4faefdd08efae3 612 PANTHER PTHR10657 1 169 1.6E-27 T 23-04-2016 RD1_RS14705 bea02586c7db3d4dca4faefdd08efae3 612 Pfam PF13145 PPIC-type PPIASE domain 244 360 1.9E-13 T 23-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 RD1_RS14705 bea02586c7db3d4dca4faefdd08efae3 612 SUPERFAMILY SSF109998 38 163 2.39E-19 T 23-04-2016 IPR027304 Trigger factor/SurA domain RD1_RS14705 bea02586c7db3d4dca4faefdd08efae3 612 SUPERFAMILY SSF109998 238 293 2.39E-19 T 23-04-2016 IPR027304 Trigger factor/SurA domain RD1_RS14705 bea02586c7db3d4dca4faefdd08efae3 612 Gene3D G3DSA:3.10.50.40 258 371 4.7E-5 T 23-04-2016 RD1_RS14705 bea02586c7db3d4dca4faefdd08efae3 612 PANTHER PTHR10657:SF13 238 509 1.6E-27 T 23-04-2016 RD1_RS14705 bea02586c7db3d4dca4faefdd08efae3 612 PANTHER PTHR10657:SF13 1 169 1.6E-27 T 23-04-2016 RD1_RS14705 bea02586c7db3d4dca4faefdd08efae3 612 Pfam PF13624 SurA N-terminal domain 10 156 1.1E-29 T 23-04-2016 RD1_RS11665 0459a4935c1d4b21d942f5fc28496b9d 388 Gene3D G3DSA:2.40.50.100 71 102 6.6E-17 T 23-04-2016 RD1_RS11665 0459a4935c1d4b21d942f5fc28496b9d 388 Gene3D G3DSA:2.40.50.100 177 208 6.6E-17 T 23-04-2016 RD1_RS11665 0459a4935c1d4b21d942f5fc28496b9d 388 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 379 3.4E-78 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RD1_RS11665 0459a4935c1d4b21d942f5fc28496b9d 388 SUPERFAMILY SSF111369 57 303 3.66E-54 T 23-04-2016 RD1_RS11665 0459a4935c1d4b21d942f5fc28496b9d 388 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 72 293 2.0E-9 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RD1_RS11665 0459a4935c1d4b21d942f5fc28496b9d 388 PANTHER PTHR30158 1 380 4.5E-102 T 23-04-2016 RD1_RS12010 23b56ae0b54730c229a4982103ec61f7 287 PANTHER PTHR11451:SF35 3 283 6.6E-54 T 23-04-2016 RD1_RS12010 23b56ae0b54730c229a4982103ec61f7 287 PRINTS PR00987 Glutamyl-tRNA synthetase signature 198 208 4.7E-13 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS12010 23b56ae0b54730c229a4982103ec61f7 287 PRINTS PR00987 Glutamyl-tRNA synthetase signature 214 222 4.7E-13 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS12010 23b56ae0b54730c229a4982103ec61f7 287 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 4.7E-13 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS12010 23b56ae0b54730c229a4982103ec61f7 287 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 4.7E-13 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS12010 23b56ae0b54730c229a4982103ec61f7 287 Gene3D G3DSA:3.40.50.620 200 249 1.5E-41 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS12010 23b56ae0b54730c229a4982103ec61f7 287 Gene3D G3DSA:3.40.50.620 3 67 1.5E-41 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS12010 23b56ae0b54730c229a4982103ec61f7 287 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 4 282 3.9E-43 T 23-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS12010 23b56ae0b54730c229a4982103ec61f7 287 Gene3D G3DSA:3.90.800.10 68 195 6.2E-12 T 23-04-2016 RD1_RS12010 23b56ae0b54730c229a4982103ec61f7 287 PANTHER PTHR11451 3 283 6.6E-54 T 23-04-2016 RD1_RS12010 23b56ae0b54730c229a4982103ec61f7 287 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS12010 23b56ae0b54730c229a4982103ec61f7 287 SUPERFAMILY SSF52374 4 284 1.23E-73 T 23-04-2016 RD1_RS10050 c400a299a46102dc81920cb079aed241 254 SUPERFAMILY SSF53187 9 245 2.29E-68 T 23-04-2016 RD1_RS10050 c400a299a46102dc81920cb079aed241 254 Gene3D G3DSA:3.40.630.40 13 246 7.1E-69 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RD1_RS10050 c400a299a46102dc81920cb079aed241 254 PIRSF PIRSF029730 2 252 1.6E-83 T 23-04-2016 IPR011227 Uncharacterised conserved protein UCP029730 RD1_RS10050 c400a299a46102dc81920cb079aed241 254 Pfam PF05013 N-formylglutamate amidohydrolase 22 223 7.0E-37 T 23-04-2016 IPR007709 N-formylglutamate amidohydrolase RD1_RS14585 69fe496b20c619189d95d7554142de66 242 Gene3D G3DSA:1.10.3680.10 99 234 1.1E-11 T 23-04-2016 IPR029024 TerB-like RD1_RS14585 69fe496b20c619189d95d7554142de66 242 Pfam PF04391 Protein of unknown function (DUF533) 60 234 2.8E-41 T 23-04-2016 IPR007486 Inner membrane protein YebE RD1_RS14585 69fe496b20c619189d95d7554142de66 242 SUPERFAMILY SSF158682 121 233 2.88E-13 T 23-04-2016 IPR029024 TerB-like RD1_RS05060 b82fc2068b46ca6e6f006f2bbcfcb3e5 591 SUPERFAMILY SSF52540 280 536 1.95E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05060 b82fc2068b46ca6e6f006f2bbcfcb3e5 591 PANTHER PTHR24220 7 423 1.3E-136 T 23-04-2016 RD1_RS05060 b82fc2068b46ca6e6f006f2bbcfcb3e5 591 SUPERFAMILY SSF52540 5 257 1.13E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05060 b82fc2068b46ca6e6f006f2bbcfcb3e5 591 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 282 5.1E-4 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RD1_RS05060 b82fc2068b46ca6e6f006f2bbcfcb3e5 591 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 516 547 6.1E-6 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RD1_RS05060 b82fc2068b46ca6e6f006f2bbcfcb3e5 591 PANTHER PTHR24220:SF574 7 423 1.3E-136 T 23-04-2016 RD1_RS05060 b82fc2068b46ca6e6f006f2bbcfcb3e5 591 Pfam PF00005 ABC transporter 307 465 3.4E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS05060 b82fc2068b46ca6e6f006f2bbcfcb3e5 591 Pfam PF00005 ABC transporter 23 185 1.5E-22 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS05060 b82fc2068b46ca6e6f006f2bbcfcb3e5 591 SMART SM00382 31 235 1.3E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS05060 b82fc2068b46ca6e6f006f2bbcfcb3e5 591 SMART SM00382 315 514 5.3E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS05060 b82fc2068b46ca6e6f006f2bbcfcb3e5 591 ProSitePatterns PS00211 ABC transporters family signature. 437 451 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS05060 b82fc2068b46ca6e6f006f2bbcfcb3e5 591 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS05060 b82fc2068b46ca6e6f006f2bbcfcb3e5 591 Gene3D G3DSA:3.40.50.300 279 538 3.0E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05060 b82fc2068b46ca6e6f006f2bbcfcb3e5 591 Gene3D G3DSA:3.40.50.300 4 258 6.3E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09250 0f7e2844a531401e55c5863cee2232e8 495 PANTHER PTHR11895 1 492 4.5E-210 T 23-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS09250 0f7e2844a531401e55c5863cee2232e8 495 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 14 485 2.6E-165 T 23-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS09250 0f7e2844a531401e55c5863cee2232e8 495 SUPERFAMILY SSF75304 3 491 3.14E-154 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS09250 0f7e2844a531401e55c5863cee2232e8 495 Gene3D G3DSA:3.90.1300.10 2 493 7.3E-176 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS09250 0f7e2844a531401e55c5863cee2232e8 495 ProSitePatterns PS00571 Amidases signature. 156 187 - T 23-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS09250 0f7e2844a531401e55c5863cee2232e8 495 PANTHER PTHR11895:SF7 1 492 4.5E-210 T 23-04-2016 RD1_RS09250 0f7e2844a531401e55c5863cee2232e8 495 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 12 486 90.194 T 23-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS09250 0f7e2844a531401e55c5863cee2232e8 495 Pfam PF01425 Amidase 25 475 3.4E-146 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS09465 0c6a5e33a35c4fee2bdcc1390d74ff22 355 Pfam PF01594 Domain of unknown function DUF20 15 329 2.4E-61 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like RD1_RS09465 0c6a5e33a35c4fee2bdcc1390d74ff22 355 PANTHER PTHR21716 11 329 1.5E-64 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like RD1_RS00890 6dc77ac0d91ae807603a3a308482b9c6 326 PANTHER PTHR42110:SF1 4 326 6.5E-57 T 23-04-2016 RD1_RS00890 6dc77ac0d91ae807603a3a308482b9c6 326 Pfam PF06089 L-asparaginase II 8 320 1.7E-108 T 23-04-2016 IPR010349 L-asparaginase II RD1_RS00890 6dc77ac0d91ae807603a3a308482b9c6 326 PANTHER PTHR42110 4 326 6.5E-57 T 23-04-2016 RD1_RS12560 302fc47f644d8b323d3e842840ef8175 310 PANTHER PTHR10584 5 237 8.1E-80 T 23-04-2016 RD1_RS12560 302fc47f644d8b323d3e842840ef8175 310 PANTHER PTHR10584:SF1 5 237 8.1E-80 T 23-04-2016 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 RD1_RS12560 302fc47f644d8b323d3e842840ef8175 310 Pfam PF04227 Indigoidine synthase A like protein 11 299 1.2E-122 T 23-04-2016 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 RD1_RS12560 302fc47f644d8b323d3e842840ef8175 310 SUPERFAMILY SSF110581 5 301 1.7E-109 T 23-04-2016 RD1_RS12560 302fc47f644d8b323d3e842840ef8175 310 Hamap MF_01876 Pseudouridine-5'-phosphate glycosidase [psuG]. 10 303 40.959 T 23-04-2016 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 RD1_RS12560 302fc47f644d8b323d3e842840ef8175 310 Gene3D G3DSA:3.40.50.970 67 168 1.5E-4 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS15175 06b964fb217992523626fc81ed8cfb3d 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 177 190 6.9E-10 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS15175 06b964fb217992523626fc81ed8cfb3d 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 101 114 6.9E-10 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS15175 06b964fb217992523626fc81ed8cfb3d 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 1 12 6.9E-10 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS15175 06b964fb217992523626fc81ed8cfb3d 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 132 148 6.9E-10 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS15175 06b964fb217992523626fc81ed8cfb3d 221 PANTHER PTHR18901 1 219 9.4E-42 T 23-04-2016 RD1_RS15175 06b964fb217992523626fc81ed8cfb3d 221 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 93 182 5.5E-10 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS15175 06b964fb217992523626fc81ed8cfb3d 221 Gene3D G3DSA:3.40.50.1000 82 216 5.2E-39 T 23-04-2016 IPR023214 HAD-like domain RD1_RS15175 06b964fb217992523626fc81ed8cfb3d 221 Gene3D G3DSA:3.40.50.1000 1 19 5.2E-39 T 23-04-2016 IPR023214 HAD-like domain RD1_RS15175 06b964fb217992523626fc81ed8cfb3d 221 SUPERFAMILY SSF56784 2 217 2.17E-50 T 23-04-2016 IPR023214 HAD-like domain RD1_RS15175 06b964fb217992523626fc81ed8cfb3d 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 4 188 2.4E-28 T 23-04-2016 IPR023214 HAD-like domain RD1_RS15175 06b964fb217992523626fc81ed8cfb3d 221 PANTHER PTHR18901:SF14 1 219 9.4E-42 T 23-04-2016 RD1_RS01255 d2d0affb4970c34f8990a2d3dffd93ac 163 Pfam PF03748 Flagellar basal body-associated protein FliL 68 161 1.2E-10 T 23-04-2016 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 RD1_RS02435 80e1dcc7816ef338d9cbf463dbfce141 162 Pfam PF14316 Domain of unknown function (DUF4381) 20 154 5.6E-32 T 23-04-2016 IPR025489 Protein of unknown function (DUF4381 RD1_RS08660 2de8e4d8b42c5c96fca3608c79efaee1 142 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 119 1.3E-12 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RD1_RS08660 2de8e4d8b42c5c96fca3608c79efaee1 142 ProSitePatterns PS00934 Glyoxalase I signature 1. 7 27 - T 23-04-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 RD1_RS08660 2de8e4d8b42c5c96fca3608c79efaee1 142 SUPERFAMILY SSF54593 3 125 2.75E-29 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS08660 2de8e4d8b42c5c96fca3608c79efaee1 142 PANTHER PTHR10374:SF8 1 136 5.7E-36 T 23-04-2016 RD1_RS08660 2de8e4d8b42c5c96fca3608c79efaee1 142 Gene3D G3DSA:3.10.180.10 4 126 2.7E-32 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS08660 2de8e4d8b42c5c96fca3608c79efaee1 142 PANTHER PTHR10374 1 136 5.7E-36 T 23-04-2016 RD1_RS04725 74c123bff5239dafe04149dc04096af9 259 Gene3D G3DSA:3.40.50.300 5 220 2.1E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04725 74c123bff5239dafe04149dc04096af9 259 SMART SM00382 32 233 3.5E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS04725 74c123bff5239dafe04149dc04096af9 259 PANTHER PTHR24220 6 228 1.4E-46 T 23-04-2016 RD1_RS04725 74c123bff5239dafe04149dc04096af9 259 PANTHER PTHR24220:SF430 6 228 1.4E-46 T 23-04-2016 RD1_RS04725 74c123bff5239dafe04149dc04096af9 259 Pfam PF00005 ABC transporter 27 182 2.0E-19 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS04725 74c123bff5239dafe04149dc04096af9 259 SUPERFAMILY SSF52540 5 219 2.86E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06605 0eea55a39ba185dc0efecce5deca28da 191 Gene3D G3DSA:3.30.160.20 19 83 2.5E-30 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain RD1_RS06605 0eea55a39ba185dc0efecce5deca28da 191 SUPERFAMILY SSF54768 18 86 1.99E-22 T 23-04-2016 RD1_RS06605 0eea55a39ba185dc0efecce5deca28da 191 PANTHER PTHR13718 14 175 3.5E-69 T 23-04-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 RD1_RS06605 0eea55a39ba185dc0efecce5deca28da 191 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 20 173 7.0E-66 T 23-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RD1_RS06605 0eea55a39ba185dc0efecce5deca28da 191 SUPERFAMILY SSF54211 90 170 1.59E-25 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS06605 0eea55a39ba185dc0efecce5deca28da 191 ProSitePatterns PS00585 Ribosomal protein S5 signature. 38 70 - T 23-04-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site RD1_RS06605 0eea55a39ba185dc0efecce5deca28da 191 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 174 35.344 T 23-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RD1_RS06605 0eea55a39ba185dc0efecce5deca28da 191 Pfam PF00333 Ribosomal protein S5, N-terminal domain 21 85 2.0E-28 T 23-04-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 RD1_RS06605 0eea55a39ba185dc0efecce5deca28da 191 Gene3D G3DSA:3.30.230.10 86 170 2.1E-33 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD1_RS06605 0eea55a39ba185dc0efecce5deca28da 191 Pfam PF03719 Ribosomal protein S5, C-terminal domain 97 168 5.2E-29 T 23-04-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 RD1_RS10995 73d318ae4000660bd0b7cddd6885d9c1 362 PIRSF PIRSF007313 1 361 5.2E-158 T 23-04-2016 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 RD1_RS10995 73d318ae4000660bd0b7cddd6885d9c1 362 Pfam PF05861 Bacterial phosphonate metabolism protein (PhnI) 1 351 5.9E-162 T 23-04-2016 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 RD1_RS06275 7fde6a21c6c2c906e8951980adeee1aa 117 SMART SM01409 8 60 3.2E-11 T 23-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS06275 7fde6a21c6c2c906e8951980adeee1aa 117 Pfam PF01192 RNA polymerase Rpb6 8 56 5.3E-12 T 23-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS06275 7fde6a21c6c2c906e8951980adeee1aa 117 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 61 15.508 T 23-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS06275 7fde6a21c6c2c906e8951980adeee1aa 117 Gene3D G3DSA:3.90.940.10 1 69 2.1E-11 T 23-04-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS06275 7fde6a21c6c2c906e8951980adeee1aa 117 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 55 1.2E-17 T 23-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS06275 7fde6a21c6c2c906e8951980adeee1aa 117 SUPERFAMILY SSF63562 1 81 1.96E-19 T 23-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RD1_RS06275 7fde6a21c6c2c906e8951980adeee1aa 117 PANTHER PTHR34476 2 90 6.0E-21 T 23-04-2016 RD1_RS16395 ff5577f5862c55820a581411bbc2ef20 104 Gene3D G3DSA:2.20.25.10 8 35 5.4E-4 T 23-04-2016 RD1_RS08600 5d4d2efcc1d8c9937534da6fcb0cfb1c 227 SUPERFAMILY SSF52540 3 217 9.31E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08600 5d4d2efcc1d8c9937534da6fcb0cfb1c 227 Pfam PF00005 ABC transporter 19 145 8.1E-13 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS08600 5d4d2efcc1d8c9937534da6fcb0cfb1c 227 PANTHER PTHR24220 4 216 3.3E-40 T 23-04-2016 RD1_RS08600 5d4d2efcc1d8c9937534da6fcb0cfb1c 227 SMART SM00382 27 194 5.1E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS08600 5d4d2efcc1d8c9937534da6fcb0cfb1c 227 Gene3D G3DSA:3.40.50.300 42 68 4.9E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08600 5d4d2efcc1d8c9937534da6fcb0cfb1c 227 Gene3D G3DSA:3.40.50.300 5 41 2.3E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08600 5d4d2efcc1d8c9937534da6fcb0cfb1c 227 Gene3D G3DSA:3.40.50.300 69 216 1.4E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08600 5d4d2efcc1d8c9937534da6fcb0cfb1c 227 PANTHER PTHR24220:SF574 4 216 3.3E-40 T 23-04-2016 RD1_RS14255 4b1cfc6ada00ff539118ad573ac26f9c 416 Gene3D G3DSA:3.30.70.360 229 326 4.6E-37 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS14255 4b1cfc6ada00ff539118ad573ac26f9c 416 PANTHER PTHR32494 9 416 6.6E-146 T 23-04-2016 RD1_RS14255 4b1cfc6ada00ff539118ad573ac26f9c 416 Pfam PF01546 Peptidase family M20/M25/M40 84 409 8.5E-40 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RD1_RS14255 4b1cfc6ada00ff539118ad573ac26f9c 416 PIRSF PIRSF001235 7 416 9.8E-125 T 23-04-2016 IPR010158 Amidase, hydantoinase/carbamoylase GO:0008152|GO:0016813 RD1_RS14255 4b1cfc6ada00ff539118ad573ac26f9c 416 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 13 410 1.5E-121 T 23-04-2016 IPR010158 Amidase, hydantoinase/carbamoylase GO:0008152|GO:0016813 RD1_RS14255 4b1cfc6ada00ff539118ad573ac26f9c 416 SUPERFAMILY SSF53187 339 412 7.74E-92 T 23-04-2016 RD1_RS14255 4b1cfc6ada00ff539118ad573ac26f9c 416 SUPERFAMILY SSF53187 5 226 7.74E-92 T 23-04-2016 RD1_RS14255 4b1cfc6ada00ff539118ad573ac26f9c 416 PANTHER PTHR32494:SF6 9 416 6.6E-146 T 23-04-2016 RD1_RS14255 4b1cfc6ada00ff539118ad573ac26f9c 416 Gene3D G3DSA:3.40.630.10 6 228 5.7E-111 T 23-04-2016 RD1_RS14255 4b1cfc6ada00ff539118ad573ac26f9c 416 Gene3D G3DSA:3.40.630.10 354 413 5.7E-111 T 23-04-2016 RD1_RS14255 4b1cfc6ada00ff539118ad573ac26f9c 416 Pfam PF07687 Peptidase dimerisation domain 215 311 8.4E-6 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS14255 4b1cfc6ada00ff539118ad573ac26f9c 416 SUPERFAMILY SSF55031 216 332 1.44E-28 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS09345 87c8d298c55a1eee5d61087087054ba2 301 SUPERFAMILY SSF103481 188 284 4.05E-13 T 23-04-2016 RD1_RS09345 87c8d298c55a1eee5d61087087054ba2 301 SUPERFAMILY SSF103481 45 147 6.28E-16 T 23-04-2016 RD1_RS09345 87c8d298c55a1eee5d61087087054ba2 301 Pfam PF00892 EamA-like transporter family 151 281 9.1E-11 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS09345 87c8d298c55a1eee5d61087087054ba2 301 Pfam PF00892 EamA-like transporter family 11 142 1.0E-17 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS09345 87c8d298c55a1eee5d61087087054ba2 301 PANTHER PTHR22911 3 290 9.4E-52 T 23-04-2016 RD1_RS15725 2e685da8f6ff30ce6bbf8bc3828b4ac8 203 PIRSF PIRSF006324 1 202 2.2E-49 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS15725 2e685da8f6ff30ce6bbf8bc3828b4ac8 203 PANTHER PTHR30086:SF3 2 199 1.0E-48 T 23-04-2016 RD1_RS15725 2e685da8f6ff30ce6bbf8bc3828b4ac8 203 Pfam PF01810 LysE type translocator 16 199 7.1E-37 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS15725 2e685da8f6ff30ce6bbf8bc3828b4ac8 203 PANTHER PTHR30086 2 199 1.0E-48 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS14080 fd5095ee9abab23d779411fbfb5ab9f3 128 SUPERFAMILY SSF52172 6 126 7.54E-34 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS14080 fd5095ee9abab23d779411fbfb5ab9f3 128 Pfam PF00072 Response regulator receiver domain 9 121 7.1E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS14080 fd5095ee9abab23d779411fbfb5ab9f3 128 Gene3D G3DSA:3.40.50.2300 5 127 3.7E-35 T 23-04-2016 RD1_RS14080 fd5095ee9abab23d779411fbfb5ab9f3 128 PANTHER PTHR26402 7 127 2.8E-35 T 23-04-2016 RD1_RS14080 fd5095ee9abab23d779411fbfb5ab9f3 128 SMART SM00448 7 121 2.9E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS14140 06ec76cedc7b5cbb7e2d6cc2be146123 105 PANTHER PTHR34389 3 104 4.5E-28 T 23-04-2016 RD1_RS14140 06ec76cedc7b5cbb7e2d6cc2be146123 105 PANTHER PTHR34389:SF2 3 104 4.5E-28 T 23-04-2016 RD1_RS14140 06ec76cedc7b5cbb7e2d6cc2be146123 105 Hamap MF_01663 L-rhamnose mutarotase [rhaM]. 2 105 31.386 T 23-04-2016 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 UniPathway: UPA00125 RD1_RS14140 06ec76cedc7b5cbb7e2d6cc2be146123 105 Pfam PF05336 Domain of unknown function (DUF718) 4 104 2.4E-25 T 23-04-2016 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 UniPathway: UPA00125 RD1_RS14140 06ec76cedc7b5cbb7e2d6cc2be146123 105 SUPERFAMILY SSF54909 3 105 3.22E-35 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS13990 1ef1f90ce6bd89507b5736fa75c9e965 75 SUPERFAMILY SSF46911 3 75 3.14E-28 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS13990 1ef1f90ce6bd89507b5736fa75c9e965 75 Gene3D G3DSA:4.10.640.10 10 75 8.1E-32 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS13990 1ef1f90ce6bd89507b5736fa75c9e965 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 23 72 4.0E-21 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS13990 1ef1f90ce6bd89507b5736fa75c9e965 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 6 74 1.7E-30 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS13990 1ef1f90ce6bd89507b5736fa75c9e965 75 PANTHER PTHR13479 7 75 2.6E-28 T 23-04-2016 RD1_RS13990 1ef1f90ce6bd89507b5736fa75c9e965 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 4 75 21.75 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS13990 1ef1f90ce6bd89507b5736fa75c9e965 75 PRINTS PR00974 Ribosomal protein S18 family signature 62 72 6.8E-19 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS13990 1ef1f90ce6bd89507b5736fa75c9e965 75 PRINTS PR00974 Ribosomal protein S18 family signature 30 40 6.8E-19 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS13990 1ef1f90ce6bd89507b5736fa75c9e965 75 PRINTS PR00974 Ribosomal protein S18 family signature 48 62 6.8E-19 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS13990 1ef1f90ce6bd89507b5736fa75c9e965 75 PRINTS PR00974 Ribosomal protein S18 family signature 40 47 6.8E-19 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS13990 1ef1f90ce6bd89507b5736fa75c9e965 75 Pfam PF01084 Ribosomal protein S18 21 70 2.1E-25 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS13990 1ef1f90ce6bd89507b5736fa75c9e965 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 23 46 - T 23-04-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS02115 f9badca0465d9cef621a28e63d35f755 339 Pfam PF01636 Phosphotransferase enzyme family 20 241 7.0E-26 T 23-04-2016 IPR002575 Aminoglycoside phosphotransferase RD1_RS02115 f9badca0465d9cef621a28e63d35f755 339 PANTHER PTHR33540 10 323 4.4E-30 T 23-04-2016 RD1_RS02115 f9badca0465d9cef621a28e63d35f755 339 SUPERFAMILY SSF56112 5 309 2.04E-44 T 23-04-2016 IPR011009 Protein kinase-like domain RD1_RS02115 f9badca0465d9cef621a28e63d35f755 339 Gene3D G3DSA:3.30.200.20 2 91 4.5E-31 T 23-04-2016 RD1_RS02115 f9badca0465d9cef621a28e63d35f755 339 Gene3D G3DSA:3.90.1200.10 92 321 3.0E-51 T 23-04-2016 RD1_RS02115 f9badca0465d9cef621a28e63d35f755 339 PANTHER PTHR33540:SF1 10 323 4.4E-30 T 23-04-2016 RD1_RS00635 14e6d1c941e65359078a67fed0f63bec 513 Gene3D G3DSA:3.40.50.1980 149 254 1.6E-18 T 23-04-2016 RD1_RS00635 14e6d1c941e65359078a67fed0f63bec 513 TIGRFAM TIGR01278 DPOR_BchB: light-independent protochlorophyllide reductase, B subunit 1 511 3.7E-186 T 23-04-2016 IPR005969 Light-independent protochlorophyllide reductase, B subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RD1_RS00635 14e6d1c941e65359078a67fed0f63bec 513 PANTHER PTHR33712:SF5 1 513 3.5E-128 T 23-04-2016 RD1_RS00635 14e6d1c941e65359078a67fed0f63bec 513 Hamap MF_00353 Light-independent protochlorophyllide reductase subunit B [bchB]. 1 512 52.788 T 23-04-2016 IPR005969 Light-independent protochlorophyllide reductase, B subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RD1_RS00635 14e6d1c941e65359078a67fed0f63bec 513 PIRSF PIRSF000163 1 513 2.6E-212 T 23-04-2016 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RD1_RS00635 14e6d1c941e65359078a67fed0f63bec 513 Gene3D G3DSA:3.40.50.1980 13 148 1.0E-22 T 23-04-2016 RD1_RS00635 14e6d1c941e65359078a67fed0f63bec 513 SUPERFAMILY SSF53807 3 425 6.87E-115 T 23-04-2016 RD1_RS00635 14e6d1c941e65359078a67fed0f63bec 513 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 13 406 7.6E-83 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RD1_RS00635 14e6d1c941e65359078a67fed0f63bec 513 PANTHER PTHR33712 1 513 3.5E-128 T 23-04-2016 RD1_RS00635 14e6d1c941e65359078a67fed0f63bec 513 Gene3D G3DSA:3.40.50.1980 277 432 1.7E-33 T 23-04-2016 RD1_RS00635 14e6d1c941e65359078a67fed0f63bec 513 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 464 508 1.2E-17 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RD1_RS10830 2ad47be07d07e57361c984020426c4b9 291 Gene3D G3DSA:3.40.50.300 88 270 2.9E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10830 2ad47be07d07e57361c984020426c4b9 291 Gene3D G3DSA:3.40.50.300 8 49 2.9E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10830 2ad47be07d07e57361c984020426c4b9 291 SUPERFAMILY SSF52540 6 53 2.16E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10830 2ad47be07d07e57361c984020426c4b9 291 SUPERFAMILY SSF52540 97 268 2.16E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10830 2ad47be07d07e57361c984020426c4b9 291 Pfam PF00685 Sulfotransferase domain 12 255 1.6E-4 T 23-04-2016 IPR000863 Sulfotransferase domain GO:0008146 RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 SUPERFAMILY SSF51735 2 252 2.9E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 Gene3D G3DSA:3.40.50.720 3 212 1.2E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 PANTHER PTHR24322 10 129 2.7E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 PANTHER PTHR24322 145 177 2.7E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.7E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 1.7E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 1.7E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 1.7E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 1.7E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 171 0.0049 T 23-04-2016 RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 PANTHER PTHR24322:SF513 10 129 2.7E-34 T 23-04-2016 RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 PANTHER PTHR24322:SF513 145 177 2.7E-34 T 23-04-2016 RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 Pfam PF00106 short chain dehydrogenase 6 183 1.5E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 132 160 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 1.1E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 1.1E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS01935 d8f57cf5d56da632922ca7350a87a6f1 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 1.1E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS05030 68797123c613276532e39bc31e65533b 382 PIRSF PIRSF017085 1 382 4.8E-148 T 23-04-2016 IPR016683 Glycosyl transferase, family 28, RedA, predicted RD1_RS05030 68797123c613276532e39bc31e65533b 382 Gene3D G3DSA:3.40.50.2000 184 350 6.5E-16 T 23-04-2016 RD1_RS05030 68797123c613276532e39bc31e65533b 382 SUPERFAMILY SSF53756 9 351 1.67E-12 T 23-04-2016 RD1_RS05030 68797123c613276532e39bc31e65533b 382 PANTHER PTHR21015 1 331 1.8E-55 T 23-04-2016 RD1_RS05030 68797123c613276532e39bc31e65533b 382 PANTHER PTHR21015:SF23 1 331 1.8E-55 T 23-04-2016 IPR016683 Glycosyl transferase, family 28, RedA, predicted RD1_RS18370 7ec2acd2d98aca40896e7227abfc1272 123 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.345 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RD1_RS18370 7ec2acd2d98aca40896e7227abfc1272 123 SUPERFAMILY SSF50249 2 123 3.34E-52 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS18370 7ec2acd2d98aca40896e7227abfc1272 123 PRINTS PR01034 Ribosomal protein S12 signature 27 42 1.5E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RD1_RS18370 7ec2acd2d98aca40896e7227abfc1272 123 PRINTS PR01034 Ribosomal protein S12 signature 77 94 1.5E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RD1_RS18370 7ec2acd2d98aca40896e7227abfc1272 123 PRINTS PR01034 Ribosomal protein S12 signature 110 122 1.5E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RD1_RS18370 7ec2acd2d98aca40896e7227abfc1272 123 PRINTS PR01034 Ribosomal protein S12 signature 94 110 1.5E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RD1_RS18370 7ec2acd2d98aca40896e7227abfc1272 123 PRINTS PR01034 Ribosomal protein S12 signature 58 77 1.5E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RD1_RS18370 7ec2acd2d98aca40896e7227abfc1272 123 PRINTS PR01034 Ribosomal protein S12 signature 42 57 1.5E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RD1_RS18370 7ec2acd2d98aca40896e7227abfc1272 123 Gene3D G3DSA:2.40.50.140 1 123 7.6E-65 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS18370 7ec2acd2d98aca40896e7227abfc1272 123 PIRSF PIRSF002133 1 123 1.0E-53 T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS18370 7ec2acd2d98aca40896e7227abfc1272 123 Pfam PF00164 Ribosomal protein S12/S23 6 123 8.5E-42 T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS18370 7ec2acd2d98aca40896e7227abfc1272 123 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 9.5E-68 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RD1_RS18370 7ec2acd2d98aca40896e7227abfc1272 123 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS18370 7ec2acd2d98aca40896e7227abfc1272 123 PANTHER PTHR11652 1 116 5.2E-72 T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 663 766 7.2E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 410 530 1.0E-16 T 23-04-2016 IPR000014 PAS domain RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 Pfam PF02743 Cache domain 65 322 5.9E-30 T 23-04-2016 IPR033479 Double Cache domain 1 RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 Pfam PF08447 PAS fold 437 518 1.8E-11 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 Gene3D G3DSA:3.30.450.20 406 525 5.7E-19 T 23-04-2016 RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 SUPERFAMILY SSF103190 148 223 6.8E-9 T 23-04-2016 IPR029151 Periplasmic sensor domain-like RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 SUPERFAMILY SSF55785 401 525 8.9E-18 T 23-04-2016 IPR000014 PAS domain RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 SMART SM00091 413 479 0.0013 T 23-04-2016 IPR000014 PAS domain RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 Pfam PF00512 His Kinase A (phospho-acceptor) domain 549 618 1.3E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 SMART SM00388 549 619 0.0012 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 SMART SM00387 660 768 6.8E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 PANTHER PTHR24423 404 765 2.0E-60 T 23-04-2016 RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 PANTHER PTHR24423 139 214 2.0E-60 T 23-04-2016 RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 SUPERFAMILY SSF47384 545 617 3.14E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 SUPERFAMILY SSF55874 605 768 4.98E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 Gene3D G3DSA:3.30.450.20 79 115 6.6E-26 T 23-04-2016 RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 Gene3D G3DSA:3.30.450.20 150 214 6.6E-26 T 23-04-2016 RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 Gene3D G3DSA:3.30.565.10 620 765 7.1E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 SMART SM00086 485 527 1.7E-5 T 23-04-2016 IPR001610 PAC motif RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 PANTHER PTHR24423:SF505 404 765 2.0E-60 T 23-04-2016 RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 PANTHER PTHR24423:SF505 139 214 2.0E-60 T 23-04-2016 RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 PRINTS PR00344 Bacterial sensor protein C-terminal signature 728 746 7.3E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 PRINTS PR00344 Bacterial sensor protein C-terminal signature 701 715 7.3E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS14180 462946913da4a0463b51b7d025718a3b 781 PRINTS PR00344 Bacterial sensor protein C-terminal signature 717 727 7.3E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RD1_RS06535 eb834f770b92dc644ae279afea837910 205 Gene3D G3DSA:2.60.120.620 7 205 2.1E-61 T 23-04-2016 RD1_RS06535 eb834f770b92dc644ae279afea837910 205 SUPERFAMILY SSF51197 165 203 5.13E-5 T 23-04-2016 RD1_RS06535 eb834f770b92dc644ae279afea837910 205 Pfam PF13759 Putative 2OG-Fe(II) oxygenase 103 202 1.6E-33 T 23-04-2016 IPR012668 Conserved hypothetical protein CHP02466 RD1_RS06535 eb834f770b92dc644ae279afea837910 205 TIGRFAM TIGR02466 TIGR02466: conserved hypothetical protein 6 205 6.0E-87 T 23-04-2016 IPR012668 Conserved hypothetical protein CHP02466 RD1_RS04295 a1fc69bd1227bfd43901af94f9006670 284 ProSitePatterns PS00380 Rhodanese signature 1. 43 54 - T 23-04-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 RD1_RS04295 a1fc69bd1227bfd43901af94f9006670 284 PANTHER PTHR11364:SF13 8 281 2.5E-117 T 23-04-2016 RD1_RS04295 a1fc69bd1227bfd43901af94f9006670 284 Pfam PF00581 Rhodanese-like domain 10 129 3.8E-16 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS04295 a1fc69bd1227bfd43901af94f9006670 284 Pfam PF00581 Rhodanese-like domain 165 271 6.6E-12 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS04295 a1fc69bd1227bfd43901af94f9006670 284 PANTHER PTHR11364 8 281 2.5E-117 T 23-04-2016 RD1_RS04295 a1fc69bd1227bfd43901af94f9006670 284 Gene3D G3DSA:3.40.250.10 5 152 1.5E-47 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS04295 a1fc69bd1227bfd43901af94f9006670 284 SMART SM00450 9 133 1.8E-26 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS04295 a1fc69bd1227bfd43901af94f9006670 284 SMART SM00450 156 277 2.2E-18 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS04295 a1fc69bd1227bfd43901af94f9006670 284 Gene3D G3DSA:3.40.250.10 153 282 1.0E-42 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS04295 a1fc69bd1227bfd43901af94f9006670 284 SUPERFAMILY SSF52821 168 282 9.56E-37 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS04295 a1fc69bd1227bfd43901af94f9006670 284 SUPERFAMILY SSF52821 5 154 2.62E-44 T 23-04-2016 IPR001763 Rhodanese-like domain RD1_RS17455 292ed7738d436bb85d535f5b3ccf2f68 168 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 10 101 1.8E-6 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RD1_RS17455 292ed7738d436bb85d535f5b3ccf2f68 168 Gene3D G3DSA:3.40.50.970 5 123 6.5E-6 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS17455 292ed7738d436bb85d535f5b3ccf2f68 168 SUPERFAMILY SSF52518 3 157 4.26E-14 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RD1_RS17455 292ed7738d436bb85d535f5b3ccf2f68 168 TIGRFAM TIGR03845 sulfopyru_alph: sulfopyruvate decarboxylase, alpha subunit 5 162 1.7E-44 T 23-04-2016 IPR022502 Sulfopyruvate decarboxylase, alpha subunit GO:0030976|GO:0050545 KEGG: 00680+4.1.1.79|MetaCyc: PWY-6637|MetaCyc: PWY-6643 RD1_RS13610 5554703249bd533d723c7359d7585b66 188 SMART SM01266 5 59 2.8E-16 T 23-04-2016 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 RD1_RS13610 5554703249bd533d723c7359d7585b66 188 PANTHER PTHR23416:SF58 1 181 5.9E-70 T 23-04-2016 RD1_RS13610 5554703249bd533d723c7359d7585b66 188 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 132 165 1.5E-9 T 23-04-2016 IPR001451 Hexapeptide repeat RD1_RS13610 5554703249bd533d723c7359d7585b66 188 Gene3D G3DSA:2.160.10.10 4 181 6.3E-51 T 23-04-2016 RD1_RS13610 5554703249bd533d723c7359d7585b66 188 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 139 167 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RD1_RS13610 5554703249bd533d723c7359d7585b66 188 SUPERFAMILY SSF51161 3 181 3.47E-45 T 23-04-2016 IPR011004 Trimeric LpxA-like RD1_RS13610 5554703249bd533d723c7359d7585b66 188 Pfam PF12464 Maltose acetyltransferase 7 58 2.4E-12 T 23-04-2016 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 RD1_RS13610 5554703249bd533d723c7359d7585b66 188 PANTHER PTHR23416 1 181 5.9E-70 T 23-04-2016 RD1_RS17715 ce2087d80fed448dfb7c336c2b81e23b 337 SUPERFAMILY SSF53474 15 176 9.4E-25 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS17715 ce2087d80fed448dfb7c336c2b81e23b 337 SUPERFAMILY SSF53474 218 293 9.4E-25 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS17715 ce2087d80fed448dfb7c336c2b81e23b 337 PIRSF PIRSF031982 1 335 2.8E-65 T 23-04-2016 IPR016986 Uncharacterised conserved protein UCP031982, alpha/beta hydrolase, XabL RD1_RS17715 ce2087d80fed448dfb7c336c2b81e23b 337 Gene3D G3DSA:3.40.50.1820 218 304 4.6E-38 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS17715 ce2087d80fed448dfb7c336c2b81e23b 337 Gene3D G3DSA:3.40.50.1820 28 176 4.6E-38 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS17475 d7e0b76db54ebeecf3b17d3a01736b2c 247 PANTHER PTHR10882 57 169 7.7E-24 T 23-04-2016 RD1_RS17475 d7e0b76db54ebeecf3b17d3a01736b2c 247 PANTHER PTHR10882 4 35 7.7E-24 T 23-04-2016 RD1_RS17475 d7e0b76db54ebeecf3b17d3a01736b2c 247 Gene3D G3DSA:3.30.950.10 137 245 3.2E-45 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RD1_RS17475 d7e0b76db54ebeecf3b17d3a01736b2c 247 PIRSF PIRSF036525 2 247 8.4E-83 T 23-04-2016 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376|UniPathway: UPA00148 RD1_RS17475 d7e0b76db54ebeecf3b17d3a01736b2c 247 TIGRFAM TIGR02434 CobF: precorrin-6A synthase (deacetylating) 4 244 7.6E-79 T 23-04-2016 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376|UniPathway: UPA00148 RD1_RS17475 d7e0b76db54ebeecf3b17d3a01736b2c 247 PANTHER PTHR10882:SF1 57 169 7.7E-24 T 23-04-2016 RD1_RS17475 d7e0b76db54ebeecf3b17d3a01736b2c 247 PANTHER PTHR10882:SF1 4 35 7.7E-24 T 23-04-2016 RD1_RS17475 d7e0b76db54ebeecf3b17d3a01736b2c 247 Gene3D G3DSA:3.40.1010.10 3 136 1.7E-28 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RD1_RS17475 d7e0b76db54ebeecf3b17d3a01736b2c 247 SUPERFAMILY SSF53790 2 244 5.09E-35 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS17475 d7e0b76db54ebeecf3b17d3a01736b2c 247 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 218 1.4E-27 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS14225 b74c679aac749996d0e54f1b18807c23 496 Gene3D G3DSA:3.40.50.1820 50 250 1.0E-20 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS14225 b74c679aac749996d0e54f1b18807c23 496 SUPERFAMILY SSF53474 30 237 4.01E-22 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS14225 b74c679aac749996d0e54f1b18807c23 496 Pfam PF12146 Serine aminopeptidase, S33 59 169 6.3E-12 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 RD1_RS03535 99011e161f4785af346a1676a6dc85ef 248 Pfam PF12698 ABC-2 family transporter protein 56 237 2.3E-10 T 23-04-2016 RD1_RS03535 99011e161f4785af346a1676a6dc85ef 248 PANTHER PTHR30294:SF5 5 244 6.9E-63 T 23-04-2016 RD1_RS03535 99011e161f4785af346a1676a6dc85ef 248 PANTHER PTHR30294 5 244 6.9E-63 T 23-04-2016 RD1_RS06020 c6032783076112fc2ec620e9d6ae4960 345 SMART SM00235 87 229 3.1E-35 T 23-04-2016 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 RD1_RS06020 c6032783076112fc2ec620e9d6ae4960 345 PANTHER PTHR10127 83 274 8.5E-68 T 23-04-2016 RD1_RS06020 c6032783076112fc2ec620e9d6ae4960 345 Pfam PF01400 Astacin (Peptidase family M12A) 90 274 3.1E-51 T 23-04-2016 IPR001506 Peptidase M12A, astacin GO:0004222|GO:0006508 RD1_RS06020 c6032783076112fc2ec620e9d6ae4960 345 PRINTS PR00480 Astacin family signature 168 186 5.6E-24 T 23-04-2016 IPR001506 Peptidase M12A, astacin GO:0004222|GO:0006508 RD1_RS06020 c6032783076112fc2ec620e9d6ae4960 345 PRINTS PR00480 Astacin family signature 224 239 5.6E-24 T 23-04-2016 IPR001506 Peptidase M12A, astacin GO:0004222|GO:0006508 RD1_RS06020 c6032783076112fc2ec620e9d6ae4960 345 PRINTS PR00480 Astacin family signature 261 274 5.6E-24 T 23-04-2016 IPR001506 Peptidase M12A, astacin GO:0004222|GO:0006508 RD1_RS06020 c6032783076112fc2ec620e9d6ae4960 345 PRINTS PR00480 Astacin family signature 112 130 5.6E-24 T 23-04-2016 IPR001506 Peptidase M12A, astacin GO:0004222|GO:0006508 RD1_RS06020 c6032783076112fc2ec620e9d6ae4960 345 PRINTS PR00480 Astacin family signature 187 204 5.6E-24 T 23-04-2016 IPR001506 Peptidase M12A, astacin GO:0004222|GO:0006508 RD1_RS06020 c6032783076112fc2ec620e9d6ae4960 345 SUPERFAMILY SSF55486 84 274 4.3E-48 T 23-04-2016 RD1_RS06020 c6032783076112fc2ec620e9d6ae4960 345 Gene3D G3DSA:3.40.390.10 85 274 3.1E-63 T 23-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 RD1_RS08780 1112cd610be569ad33e5f5842cdd5273 249 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS08780 1112cd610be569ad33e5f5842cdd5273 249 Gene3D G3DSA:3.40.50.300 1 244 1.7E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08780 1112cd610be569ad33e5f5842cdd5273 249 PANTHER PTHR24220:SF347 1 244 1.5E-121 T 23-04-2016 RD1_RS08780 1112cd610be569ad33e5f5842cdd5273 249 PANTHER PTHR24220 1 244 1.5E-121 T 23-04-2016 RD1_RS08780 1112cd610be569ad33e5f5842cdd5273 249 PIRSF PIRSF039085 1 248 2.5E-114 T 23-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RD1_RS08780 1112cd610be569ad33e5f5842cdd5273 249 Pfam PF00005 ABC transporter 15 172 5.2E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS08780 1112cd610be569ad33e5f5842cdd5273 249 SMART SM00382 23 220 2.8E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS08780 1112cd610be569ad33e5f5842cdd5273 249 SUPERFAMILY SSF52540 2 242 4.14E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18695 e4283123f366aa9828d6a523f71cfeee 222 PANTHER PTHR14269 3 148 3.7E-34 T 23-04-2016 RD1_RS18695 e4283123f366aa9828d6a523f71cfeee 222 PANTHER PTHR14269 190 217 3.7E-34 T 23-04-2016 RD1_RS18695 e4283123f366aa9828d6a523f71cfeee 222 PIRSF PIRSF000847 1 222 3.2E-43 T 23-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RD1_RS18695 e4283123f366aa9828d6a523f71cfeee 222 Pfam PF01066 CDP-alcohol phosphatidyltransferase 5 72 6.7E-17 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RD1_RS18695 e4283123f366aa9828d6a523f71cfeee 222 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 50 72 - T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RD1_RS18695 e4283123f366aa9828d6a523f71cfeee 222 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 218 2.6E-44 T 23-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RD1_RS12115 d39629451080ca8221f92dfddd75b461 362 SUPERFAMILY SSF50952 25 361 1.96E-42 T 23-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RD1_RS12115 d39629451080ca8221f92dfddd75b461 362 Gene3D G3DSA:2.120.10.30 12 361 2.2E-100 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RD1_RS12115 d39629451080ca8221f92dfddd75b461 362 PANTHER PTHR19328 29 361 2.8E-63 T 23-04-2016 RD1_RS12115 d39629451080ca8221f92dfddd75b461 362 Pfam PF07995 Glucose / Sorbosone dehydrogenase 35 358 2.7E-127 T 23-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 RD1_RS03700 cbf5c4d2ea48e3bae3b65f1647d89049 737 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 223 249 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS03700 cbf5c4d2ea48e3bae3b65f1647d89049 737 PANTHER PTHR30603 193 269 1.3E-15 T 23-04-2016 RD1_RS03700 cbf5c4d2ea48e3bae3b65f1647d89049 737 PRINTS PR00046 Major sigma-70 factor signature 202 214 4.4E-11 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS03700 cbf5c4d2ea48e3bae3b65f1647d89049 737 PRINTS PR00046 Major sigma-70 factor signature 238 249 4.4E-11 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS03700 cbf5c4d2ea48e3bae3b65f1647d89049 737 PRINTS PR00046 Major sigma-70 factor signature 223 238 4.4E-11 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS03700 cbf5c4d2ea48e3bae3b65f1647d89049 737 Gene3D G3DSA:1.10.10.10 194 256 1.4E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03700 cbf5c4d2ea48e3bae3b65f1647d89049 737 SUPERFAMILY SSF88659 187 256 6.73E-17 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS03700 cbf5c4d2ea48e3bae3b65f1647d89049 737 Pfam PF04545 Sigma-70, region 4 199 249 2.5E-14 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS03700 cbf5c4d2ea48e3bae3b65f1647d89049 737 PANTHER PTHR30603:SF0 193 269 1.3E-15 T 23-04-2016 RD1_RS15005 53d3613329df392f16382b4fcae047dd 480 Pfam PF00361 Proton-conducting membrane transporter 123 417 4.1E-86 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RD1_RS15005 53d3613329df392f16382b4fcae047dd 480 PANTHER PTHR22773 1 478 4.8E-160 T 23-04-2016 RD1_RS15005 53d3613329df392f16382b4fcae047dd 480 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 4 467 17.936 T 23-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RD1_RS15005 53d3613329df392f16382b4fcae047dd 480 PANTHER PTHR22773:SF41 1 478 4.8E-160 T 23-04-2016 RD1_RS15005 53d3613329df392f16382b4fcae047dd 480 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 7 457 1.6E-138 T 23-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RD1_RS15005 53d3613329df392f16382b4fcae047dd 480 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 71 96 1.6E-9 T 23-04-2016 RD1_RS15005 53d3613329df392f16382b4fcae047dd 480 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 305 317 1.6E-9 T 23-04-2016 RD1_RS15005 53d3613329df392f16382b4fcae047dd 480 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 213 234 1.6E-9 T 23-04-2016 RD1_RS15005 53d3613329df392f16382b4fcae047dd 480 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 410 429 1.6E-9 T 23-04-2016 RD1_RS03000 1b88a0c12ac5ff57a5c2c99b2f7ef9ee 64 Pfam PF07896 Protein of unknown function (DUF1674) 19 64 1.7E-15 T 23-04-2016 IPR012875 Protein of unknown function DUF1674 RD1_RS03000 1b88a0c12ac5ff57a5c2c99b2f7ef9ee 64 PANTHER PTHR28524 38 64 6.1E-14 T 23-04-2016 RD1_RS03000 1b88a0c12ac5ff57a5c2c99b2f7ef9ee 64 PANTHER PTHR28524:SF2 38 64 6.1E-14 T 23-04-2016 RD1_RS16400 97b75b4eb275a0e564a5afc21f83b508 257 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 23 256 2.9E-55 T 23-04-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 RD1_RS16400 97b75b4eb275a0e564a5afc21f83b508 257 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 23 94 4.8E-9 T 23-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 RD1_RS16400 97b75b4eb275a0e564a5afc21f83b508 257 PANTHER PTHR12029 8 256 2.4E-50 T 23-04-2016 RD1_RS16400 97b75b4eb275a0e564a5afc21f83b508 257 SUPERFAMILY SSF55315 16 93 5.41E-12 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like RD1_RS16400 97b75b4eb275a0e564a5afc21f83b508 257 PANTHER PTHR12029:SF58 8 256 2.4E-50 T 23-04-2016 RD1_RS16400 97b75b4eb275a0e564a5afc21f83b508 257 Gene3D G3DSA:3.30.1330.30 15 92 1.3E-11 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like RD1_RS16400 97b75b4eb275a0e564a5afc21f83b508 257 Pfam PF00588 SpoU rRNA Methylase family 110 252 1.5E-32 T 23-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RD1_RS16400 97b75b4eb275a0e564a5afc21f83b508 257 SUPERFAMILY SSF75217 84 256 2.88E-38 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases RD1_RS16400 97b75b4eb275a0e564a5afc21f83b508 257 SMART SM00967 23 96 5.5E-11 T 23-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 RD1_RS16400 97b75b4eb275a0e564a5afc21f83b508 257 Gene3D G3DSA:3.40.1280.10 106 256 2.8E-42 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RD1_RS05830 a154ea75d48c6cb5b840753991e597e7 363 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 149 356 1.3E-31 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS05830 a154ea75d48c6cb5b840753991e597e7 363 Gene3D G3DSA:1.10.3720.10 128 348 3.2E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS05830 a154ea75d48c6cb5b840753991e597e7 363 PANTHER PTHR30465 67 358 1.3E-192 T 23-04-2016 RD1_RS05830 a154ea75d48c6cb5b840753991e597e7 363 SUPERFAMILY SSF161098 128 344 2.62E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS05830 a154ea75d48c6cb5b840753991e597e7 363 PANTHER PTHR30465:SF66 2 45 1.3E-192 T 23-04-2016 RD1_RS05830 a154ea75d48c6cb5b840753991e597e7 363 PANTHER PTHR30465:SF66 67 358 1.3E-192 T 23-04-2016 RD1_RS05830 a154ea75d48c6cb5b840753991e597e7 363 PANTHER PTHR30465 2 45 1.3E-192 T 23-04-2016 RD1_RS05895 28a154cb12a897dc36ca70c5831a05dd 53 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 51 9.0E-23 T 23-04-2016 IPR004714 Cytochrome oxidase maturation protein cbb3-type RD1_RS05895 28a154cb12a897dc36ca70c5831a05dd 53 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 2 45 2.6E-18 T 23-04-2016 IPR004714 Cytochrome oxidase maturation protein cbb3-type RD1_RS05410 d78b3c0d44d57e0c399d768c390755ea 353 Pfam PF00355 Rieske [2Fe-2S] domain 234 307 1.1E-12 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS05410 d78b3c0d44d57e0c399d768c390755ea 353 PANTHER PTHR21496 233 330 4.7E-16 T 23-04-2016 RD1_RS05410 d78b3c0d44d57e0c399d768c390755ea 353 SUPERFAMILY SSF50022 232 335 3.67E-25 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS05410 d78b3c0d44d57e0c399d768c390755ea 353 Pfam PF01794 Ferric reductase like transmembrane component 57 181 1.3E-16 T 23-04-2016 IPR013130 Ferric reductase transmembrane component-like domain RD1_RS05410 d78b3c0d44d57e0c399d768c390755ea 353 Gene3D G3DSA:2.102.10.10 232 333 1.3E-24 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RD1_RS04270 c68b347e0d5c84c0500004b1fc0f791d 407 SUPERFAMILY SSF55920 164 401 8.77E-62 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS04270 c68b347e0d5c84c0500004b1fc0f791d 407 SUPERFAMILY SSF53092 9 161 1.03E-43 T 23-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal RD1_RS04270 c68b347e0d5c84c0500004b1fc0f791d 407 PANTHER PTHR10804 29 406 1.4E-155 T 23-04-2016 RD1_RS04270 c68b347e0d5c84c0500004b1fc0f791d 407 Pfam PF00557 Metallopeptidase family M24 171 388 1.8E-25 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS04270 c68b347e0d5c84c0500004b1fc0f791d 407 Pfam PF01321 Creatinase/Prolidase N-terminal domain 33 162 4.4E-11 T 23-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 RD1_RS04270 c68b347e0d5c84c0500004b1fc0f791d 407 PANTHER PTHR10804:SF99 29 406 1.4E-155 T 23-04-2016 RD1_RS04270 c68b347e0d5c84c0500004b1fc0f791d 407 Gene3D G3DSA:3.90.230.10 163 400 3.6E-46 T 23-04-2016 IPR000994 Peptidase M24, structural domain RD1_RS04270 c68b347e0d5c84c0500004b1fc0f791d 407 Gene3D G3DSA:3.40.350.10 9 161 1.8E-49 T 23-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 SUPERFAMILY SSF51120 838 988 7.59E-20 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 SUPERFAMILY SSF51120 743 777 7.59E-20 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 PANTHER PTHR39431 430 551 3.1E-25 T 23-04-2016 RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 PANTHER PTHR39431:SF1 430 551 3.1E-25 T 23-04-2016 RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 874 895 4.7E-5 T 23-04-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 318 336 4.7E-5 T 23-04-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 Gene3D G3DSA:2.150.10.10 847 989 6.3E-17 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 Gene3D G3DSA:2.150.10.10 996 1111 6.3E-18 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 PRINTS PR00313 NodO calcium binding signature 883 891 1.9E-7 T 23-04-2016 RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 PRINTS PR00313 NodO calcium binding signature 1021 1029 1.9E-7 T 23-04-2016 RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 PRINTS PR00313 NodO calcium binding signature 1063 1072 1.9E-7 T 23-04-2016 RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 PRINTS PR00313 NodO calcium binding signature 871 882 1.9E-7 T 23-04-2016 RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 870 888 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 861 879 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1068 1086 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1050 1068 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 SUPERFAMILY SSF51120 994 1114 1.15E-16 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 874 890 0.14 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1081 1097 0.082 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1062 1079 0.78 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 891 907 0.046 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 856 872 1.4 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1044 1061 2.5 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15890 943afc94b0ee39b3baebb2d1c5fa6eae 1117 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1016 1028 0.3 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS15080 e63c5e47b19364c27f6b00dfc020612a 82 ProDom PD062377 3'REGION NQO2 URF1 16 76 3.0E-7 T 23-04-2016 IPR020308 Uncharacterised protein family, Ynq1 RD1_RS16110 5558599b72dc92a5f8c1a20d28586a85 352 PANTHER PTHR12049:SF7 6 352 1.3E-101 T 23-04-2016 RD1_RS16110 5558599b72dc92a5f8c1a20d28586a85 352 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 60 279 2.1E-60 T 23-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA RD1_RS16110 5558599b72dc92a5f8c1a20d28586a85 352 SUPERFAMILY SSF53335 4 350 5.28E-108 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS16110 5558599b72dc92a5f8c1a20d28586a85 352 PANTHER PTHR12049 6 352 1.3E-101 T 23-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA RD1_RS03715 15b68595fdc70ecb610ff5f37958794b 683 SUPERFAMILY SSF52540 452 627 6.64E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03715 15b68595fdc70ecb610ff5f37958794b 683 SUPERFAMILY SSF52540 371 418 6.64E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03715 15b68595fdc70ecb610ff5f37958794b 683 Pfam PF13476 AAA domain 5 255 2.1E-22 T 23-04-2016 RD1_RS03715 15b68595fdc70ecb610ff5f37958794b 683 Gene3D G3DSA:3.40.50.300 2 178 7.3E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03715 15b68595fdc70ecb610ff5f37958794b 683 Gene3D G3DSA:3.40.50.300 444 445 7.3E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03715 15b68595fdc70ecb610ff5f37958794b 683 Gene3D G3DSA:3.40.50.300 489 630 7.3E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03715 15b68595fdc70ecb610ff5f37958794b 683 SUPERFAMILY SSF52540 270 284 4.17E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03715 15b68595fdc70ecb610ff5f37958794b 683 SUPERFAMILY SSF52540 3 176 4.17E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03715 15b68595fdc70ecb610ff5f37958794b 683 SUPERFAMILY SSF52540 543 624 4.17E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11095 a435d6dc8d40d95821869f000874f44d 310 Gene3D G3DSA:1.10.3720.10 28 293 5.3E-40 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11095 a435d6dc8d40d95821869f000874f44d 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 302 4.1E-10 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11095 a435d6dc8d40d95821869f000874f44d 310 PANTHER PTHR30193 27 309 2.7E-73 T 23-04-2016 RD1_RS11095 a435d6dc8d40d95821869f000874f44d 310 SUPERFAMILY SSF161098 28 296 6.41E-47 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11095 a435d6dc8d40d95821869f000874f44d 310 PANTHER PTHR30193:SF10 27 309 2.7E-73 T 23-04-2016 RD1_RS13590 dd253ab9047c6e7ef3fcf6be7b30a638 298 Pfam PF01145 SPFH domain / Band 7 family 34 203 3.8E-32 T 23-04-2016 IPR001107 Band 7 domain RD1_RS13590 dd253ab9047c6e7ef3fcf6be7b30a638 298 PRINTS PR00721 Stomatin signature 37 59 1.9E-20 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RD1_RS13590 dd253ab9047c6e7ef3fcf6be7b30a638 298 PRINTS PR00721 Stomatin signature 164 182 1.9E-20 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RD1_RS13590 dd253ab9047c6e7ef3fcf6be7b30a638 298 PRINTS PR00721 Stomatin signature 140 163 1.9E-20 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RD1_RS13590 dd253ab9047c6e7ef3fcf6be7b30a638 298 PRINTS PR00721 Stomatin signature 183 204 1.9E-20 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RD1_RS13590 dd253ab9047c6e7ef3fcf6be7b30a638 298 PRINTS PR00721 Stomatin signature 85 106 1.9E-20 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RD1_RS13590 dd253ab9047c6e7ef3fcf6be7b30a638 298 PANTHER PTHR10264 7 279 2.0E-66 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RD1_RS13590 dd253ab9047c6e7ef3fcf6be7b30a638 298 SMART SM00244 30 188 4.0E-40 T 23-04-2016 IPR001107 Band 7 domain RD1_RS13590 dd253ab9047c6e7ef3fcf6be7b30a638 298 SUPERFAMILY SSF117892 61 195 2.62E-29 T 23-04-2016 IPR001107 Band 7 domain RD1_RS14455 1f93821bd8f9b4a2f00886776a8bb147 358 Pfam PF01266 FAD dependent oxidoreductase 2 332 5.7E-40 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS14455 1f93821bd8f9b4a2f00886776a8bb147 358 PANTHER PTHR13847 3 356 2.8E-33 T 23-04-2016 RD1_RS14455 1f93821bd8f9b4a2f00886776a8bb147 358 SUPERFAMILY SSF51905 2 209 1.81E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS14455 1f93821bd8f9b4a2f00886776a8bb147 358 SUPERFAMILY SSF51905 298 356 1.81E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS14455 1f93821bd8f9b4a2f00886776a8bb147 358 Gene3D G3DSA:3.50.50.60 298 357 6.1E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS14455 1f93821bd8f9b4a2f00886776a8bb147 358 Gene3D G3DSA:3.50.50.60 127 208 6.1E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS14455 1f93821bd8f9b4a2f00886776a8bb147 358 Gene3D G3DSA:3.50.50.60 2 78 6.1E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS14505 18edcb47ceb4e320d039db26af68e314 336 PANTHER PTHR30100:SF1 1 336 6.9E-112 T 23-04-2016 RD1_RS14505 18edcb47ceb4e320d039db26af68e314 336 PIRSF PIRSF002465 1 334 1.2E-112 T 23-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 RD1_RS14505 18edcb47ceb4e320d039db26af68e314 336 PANTHER PTHR30100 1 336 6.9E-112 T 23-04-2016 RD1_RS14505 18edcb47ceb4e320d039db26af68e314 336 Gene3D G3DSA:3.40.718.10 1 327 6.2E-110 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RD1_RS14505 18edcb47ceb4e320d039db26af68e314 336 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 334 127.799 T 23-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 RD1_RS14505 18edcb47ceb4e320d039db26af68e314 336 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 1 326 1.5E-86 T 23-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 RD1_RS14505 18edcb47ceb4e320d039db26af68e314 336 Pfam PF02504 Fatty acid synthesis protein 1 319 1.2E-105 T 23-04-2016 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 UniPathway: UPA00085 RD1_RS14505 18edcb47ceb4e320d039db26af68e314 336 SUPERFAMILY SSF53659 1 326 7.81E-93 T 23-04-2016 RD1_RS13400 3b8dfae76caea03927efe7808b258af5 236 Gene3D G3DSA:3.40.50.300 7 229 1.5E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13400 3b8dfae76caea03927efe7808b258af5 236 SMART SM00382 30 207 4.5E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS13400 3b8dfae76caea03927efe7808b258af5 236 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS13400 3b8dfae76caea03927efe7808b258af5 236 SUPERFAMILY SSF52540 6 222 3.34E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13400 3b8dfae76caea03927efe7808b258af5 236 PANTHER PTHR24220 7 235 3.6E-66 T 23-04-2016 RD1_RS13400 3b8dfae76caea03927efe7808b258af5 236 Pfam PF00005 ABC transporter 23 159 1.9E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS15780 7e53092fd31ccf1c75a205ab00e51f4c 464 PANTHER PTHR11748 6 464 5.4E-239 T 23-04-2016 RD1_RS15780 7e53092fd31ccf1c75a205ab00e51f4c 464 SUPERFAMILY SSF55103 227 464 1.01E-70 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RD1_RS15780 7e53092fd31ccf1c75a205ab00e51f4c 464 Pfam PF01565 FAD binding domain 50 186 2.4E-37 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RD1_RS15780 7e53092fd31ccf1c75a205ab00e51f4c 464 Gene3D G3DSA:3.30.465.10 106 224 6.1E-45 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RD1_RS15780 7e53092fd31ccf1c75a205ab00e51f4c 464 SUPERFAMILY SSF56176 14 224 1.82E-66 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RD1_RS15780 7e53092fd31ccf1c75a205ab00e51f4c 464 PANTHER PTHR11748:SF97 6 464 5.4E-239 T 23-04-2016 RD1_RS15780 7e53092fd31ccf1c75a205ab00e51f4c 464 Pfam PF02913 FAD linked oxidases, C-terminal domain 223 463 1.9E-61 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RD1_RS15780 7e53092fd31ccf1c75a205ab00e51f4c 464 Gene3D G3DSA:3.30.43.10 8 105 1.2E-25 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RD1_RS15780 7e53092fd31ccf1c75a205ab00e51f4c 464 Gene3D G3DSA:1.10.45.10 425 463 2.7E-13 T 23-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RD1_RS11080 d41e01e5b43bea68da7fb0c3bafac708 351 PANTHER PTHR30006:SF7 5 351 2.0E-50 T 23-04-2016 RD1_RS11080 d41e01e5b43bea68da7fb0c3bafac708 351 SUPERFAMILY SSF53850 38 349 7.53E-46 T 23-04-2016 RD1_RS11080 d41e01e5b43bea68da7fb0c3bafac708 351 Pfam PF13343 Bacterial extracellular solute-binding protein 95 337 2.8E-29 T 23-04-2016 RD1_RS11080 d41e01e5b43bea68da7fb0c3bafac708 351 Gene3D G3DSA:3.40.190.10 285 341 3.8E-11 T 23-04-2016 RD1_RS11080 d41e01e5b43bea68da7fb0c3bafac708 351 Gene3D G3DSA:3.40.190.10 14 137 3.8E-11 T 23-04-2016 RD1_RS11080 d41e01e5b43bea68da7fb0c3bafac708 351 Gene3D G3DSA:3.40.190.10 143 284 8.1E-19 T 23-04-2016 RD1_RS11080 d41e01e5b43bea68da7fb0c3bafac708 351 PANTHER PTHR30006 5 351 2.0E-50 T 23-04-2016 RD1_RS18520 4f19709d9139a08c41cd229ca9767e32 735 Gene3D G3DSA:3.30.420.10 340 511 2.2E-23 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS18520 4f19709d9139a08c41cd229ca9767e32 735 Gene3D G3DSA:1.10.10.60 209 273 1.0E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS18520 4f19709d9139a08c41cd229ca9767e32 735 Pfam PF09299 Mu transposase, C-terminal 534 590 5.0E-6 T 23-04-2016 IPR015378 Transposase-like, Mu, C-terminal RD1_RS18520 4f19709d9139a08c41cd229ca9767e32 735 Pfam PF00665 Integrase core domain 289 452 2.6E-12 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS18520 4f19709d9139a08c41cd229ca9767e32 735 SUPERFAMILY SSF53098 341 513 5.77E-17 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS05330 d6001bca0799a73a3a4779e6a651c0b7 239 TIGRFAM TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system 5 235 6.0E-107 T 23-04-2016 IPR022467 ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system RD1_RS05330 d6001bca0799a73a3a4779e6a651c0b7 239 SUPERFAMILY SSF52540 5 225 7.87E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05330 d6001bca0799a73a3a4779e6a651c0b7 239 PANTHER PTHR24220 6 222 5.3E-78 T 23-04-2016 RD1_RS05330 d6001bca0799a73a3a4779e6a651c0b7 239 Pfam PF00005 ABC transporter 20 163 1.6E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS05330 d6001bca0799a73a3a4779e6a651c0b7 239 SMART SM00382 29 227 8.6E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS05330 d6001bca0799a73a3a4779e6a651c0b7 239 Gene3D G3DSA:3.40.50.300 5 222 4.4E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01745 d4f2457f58012bdd7891293a64987335 154 Gene3D G3DSA:3.40.930.10 1 151 2.0E-39 T 23-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RD1_RS01745 d4f2457f58012bdd7891293a64987335 154 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 146 2.5E-29 T 23-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RD1_RS01745 d4f2457f58012bdd7891293a64987335 154 PANTHER PTHR30505 1 154 9.6E-50 T 23-04-2016 RD1_RS01745 d4f2457f58012bdd7891293a64987335 154 SUPERFAMILY SSF55804 1 146 2.62E-36 T 23-04-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 RD1_RS01745 d4f2457f58012bdd7891293a64987335 154 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 23-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RD1_RS01745 d4f2457f58012bdd7891293a64987335 154 PANTHER PTHR30505:SF6 1 154 9.6E-50 T 23-04-2016 RD1_RS04400 9bb63e65fd9387d0fee3592051373941 319 PRINTS PR01021 OMPA domain signature 214 236 3.4E-7 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RD1_RS04400 9bb63e65fd9387d0fee3592051373941 319 PRINTS PR01021 OMPA domain signature 259 275 3.4E-7 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RD1_RS04400 9bb63e65fd9387d0fee3592051373941 319 PRINTS PR01021 OMPA domain signature 244 259 3.4E-7 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RD1_RS04400 9bb63e65fd9387d0fee3592051373941 319 Pfam PF00691 OmpA family 214 309 1.5E-16 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS04400 9bb63e65fd9387d0fee3592051373941 319 PANTHER PTHR30128 212 319 4.1E-29 T 23-04-2016 RD1_RS04400 9bb63e65fd9387d0fee3592051373941 319 PANTHER PTHR30128 174 193 4.1E-29 T 23-04-2016 RD1_RS04400 9bb63e65fd9387d0fee3592051373941 319 SUPERFAMILY SSF103088 207 315 9.42E-28 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS04400 9bb63e65fd9387d0fee3592051373941 319 Gene3D G3DSA:3.30.1330.60 212 315 3.2E-27 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS04225 9e04466d9cc373c9c91ff423d2d44d98 145 PANTHER PTHR30204:SF18 1 127 7.8E-38 T 23-04-2016 RD1_RS04225 9e04466d9cc373c9c91ff423d2d44d98 145 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 5.9E-13 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RD1_RS04225 9e04466d9cc373c9c91ff423d2d44d98 145 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 5.9E-13 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RD1_RS04225 9e04466d9cc373c9c91ff423d2d44d98 145 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 5.9E-13 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RD1_RS04225 9e04466d9cc373c9c91ff423d2d44d98 145 Gene3D G3DSA:1.10.1660.10 1 56 8.2E-27 T 23-04-2016 RD1_RS04225 9e04466d9cc373c9c91ff423d2d44d98 145 SMART SM00422 2 71 1.6E-30 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RD1_RS04225 9e04466d9cc373c9c91ff423d2d44d98 145 Gene3D G3DSA:1.10.1660.10 57 132 3.8E-30 T 23-04-2016 RD1_RS04225 9e04466d9cc373c9c91ff423d2d44d98 145 SUPERFAMILY SSF46955 2 125 6.96E-38 T 23-04-2016 IPR009061 Putative DNA-binding domain RD1_RS04225 9e04466d9cc373c9c91ff423d2d44d98 145 Pfam PF00376 MerR family regulatory protein 4 40 1.8E-14 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RD1_RS04225 9e04466d9cc373c9c91ff423d2d44d98 145 PANTHER PTHR30204 1 127 7.8E-38 T 23-04-2016 RD1_RS04225 9e04466d9cc373c9c91ff423d2d44d98 145 Pfam PF09278 MerR, DNA binding 45 108 1.6E-23 T 23-04-2016 IPR015358 Transcription regulator MerR, DNA binding RD1_RS20440 52b470875f021573ae97c650586952aa 312 PANTHER PTHR22870 1 100 5.5E-19 T 23-04-2016 RD1_RS20440 52b470875f021573ae97c650586952aa 312 SUPERFAMILY SSF50985 1 98 1.28E-19 T 23-04-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II RD1_RS20440 52b470875f021573ae97c650586952aa 312 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 273 291 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20440 52b470875f021573ae97c650586952aa 312 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 246 264 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20440 52b470875f021573ae97c650586952aa 312 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 48 76 3.0E-6 T 23-04-2016 RD1_RS20440 52b470875f021573ae97c650586952aa 312 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 255 273 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20440 52b470875f021573ae97c650586952aa 312 Gene3D G3DSA:2.130.10.30 1 95 4.1E-20 T 23-04-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II RD1_RS20440 52b470875f021573ae97c650586952aa 312 PRINTS PR00313 NodO calcium binding signature 250 258 2.8E-7 T 23-04-2016 RD1_RS20440 52b470875f021573ae97c650586952aa 312 PRINTS PR00313 NodO calcium binding signature 268 277 2.8E-7 T 23-04-2016 RD1_RS20440 52b470875f021573ae97c650586952aa 312 PRINTS PR00313 NodO calcium binding signature 238 249 2.8E-7 T 23-04-2016 RD1_RS20440 52b470875f021573ae97c650586952aa 312 PRINTS PR00313 NodO calcium binding signature 259 267 2.8E-7 T 23-04-2016 RD1_RS20440 52b470875f021573ae97c650586952aa 312 SUPERFAMILY SSF51120 216 302 9.55E-13 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS20440 52b470875f021573ae97c650586952aa 312 Pfam PF13205 Bacterial Ig-like domain 98 210 1.2E-11 T 23-04-2016 IPR032812 SbsA, Ig-like domain RD1_RS20440 52b470875f021573ae97c650586952aa 312 ProSitePatterns PS00626 Regulator of chromosome condensation (RCC1) signature 2. 51 61 - T 23-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 RD1_RS20440 52b470875f021573ae97c650586952aa 312 Gene3D G3DSA:2.150.10.10 217 301 1.6E-14 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS18350 fbda812abad67452cf0d975392fdc2df 191 Gene3D G3DSA:2.40.50.90 57 172 5.2E-16 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RD1_RS18350 fbda812abad67452cf0d975392fdc2df 191 Pfam PF00565 Staphylococcal nuclease homologue 90 173 1.5E-4 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RD1_RS18350 fbda812abad67452cf0d975392fdc2df 191 SUPERFAMILY SSF50199 60 184 1.03E-15 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RD1_RS18350 fbda812abad67452cf0d975392fdc2df 191 SMART SM00318 59 184 0.0042 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RD1_RS19320 3e55a71a8cacd00b8f3ed00f616a0f54 96 Pfam PF05488 PAAR motif 18 85 1.2E-22 T 23-04-2016 IPR008727 PAAR motif RD1_RS19225 f52e03bd610c96390262853351096f47 278 SMART SM00850 190 278 1.8E-12 T 23-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RD1_RS19225 f52e03bd610c96390262853351096f47 278 Gene3D G3DSA:2.40.50.40 193 242 2.6E-4 T 23-04-2016 RD1_RS19225 f52e03bd610c96390262853351096f47 278 Pfam PF04397 LytTr DNA-binding domain 193 278 2.6E-14 T 23-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RD1_RS15565 987a88cb06f0afc69ada92f94b52f044 206 SMART SM01390 3 93 2.2E-41 T 23-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RD1_RS15565 987a88cb06f0afc69ada92f94b52f044 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 5 93 4.8E-23 T 23-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RD1_RS15565 987a88cb06f0afc69ada92f94b52f044 206 Gene3D G3DSA:3.10.290.10 97 192 4.3E-31 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RD1_RS15565 987a88cb06f0afc69ada92f94b52f044 206 PANTHER PTHR11831:SF4 1 203 1.0E-68 T 23-04-2016 RD1_RS15565 987a88cb06f0afc69ada92f94b52f044 206 Pfam PF01479 S4 domain 94 141 2.3E-19 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RD1_RS15565 987a88cb06f0afc69ada92f94b52f044 206 SMART SM00363 94 158 1.6E-19 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RD1_RS15565 987a88cb06f0afc69ada92f94b52f044 206 PANTHER PTHR11831 1 203 1.0E-68 T 23-04-2016 IPR022801 Ribosomal protein S4/S9 RD1_RS15565 987a88cb06f0afc69ada92f94b52f044 206 SUPERFAMILY SSF55174 4 204 1.7E-62 T 23-04-2016 RD1_RS15565 987a88cb06f0afc69ada92f94b52f044 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 5 205 2.5E-69 T 23-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RD1_RS15565 987a88cb06f0afc69ada92f94b52f044 206 Gene3D G3DSA:1.10.1050.10 3 96 5.0E-34 T 23-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RD1_RS15565 987a88cb06f0afc69ada92f94b52f044 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 92 116 - T 23-04-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 RD1_RS15565 987a88cb06f0afc69ada92f94b52f044 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 205 31.676 T 23-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RD1_RS14315 114b377c92113709a0d324fb4885ab4d 209 PANTHER PTHR33508:SF1 1 199 3.5E-69 T 23-04-2016 RD1_RS14315 114b377c92113709a0d324fb4885ab4d 209 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 5 199 3.5E-58 T 23-04-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 RD1_RS14315 114b377c92113709a0d324fb4885ab4d 209 Pfam PF01914 MarC family integral membrane protein 6 200 1.4E-60 T 23-04-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 RD1_RS14315 114b377c92113709a0d324fb4885ab4d 209 PANTHER PTHR33508 1 199 3.5E-69 T 23-04-2016 RD1_RS01885 367fff1f21d962e32a9d49fb435b3f1b 259 Pfam PF00520 Ion transport protein 14 230 3.6E-38 T 23-04-2016 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 RD1_RS01885 367fff1f21d962e32a9d49fb435b3f1b 259 PANTHER PTHR10037 1 241 7.3E-30 T 23-04-2016 RD1_RS01885 367fff1f21d962e32a9d49fb435b3f1b 259 Gene3D G3DSA:1.20.120.350 15 111 2.5E-9 T 23-04-2016 IPR027359 Voltage-dependent channel, four helix bundle domain RD1_RS01885 367fff1f21d962e32a9d49fb435b3f1b 259 SUPERFAMILY SSF81324 14 225 2.82E-31 T 23-04-2016 RD1_RS01885 367fff1f21d962e32a9d49fb435b3f1b 259 PANTHER PTHR10037:SF196 1 241 7.3E-30 T 23-04-2016 RD1_RS01490 8c136889c75ac1861fd3098955b3de83 309 PANTHER PTHR36838 1 309 7.6E-35 T 23-04-2016 RD1_RS01490 8c136889c75ac1861fd3098955b3de83 309 Pfam PF03547 Membrane transport protein 155 302 5.8E-15 T 23-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 RD1_RS01490 8c136889c75ac1861fd3098955b3de83 309 Pfam PF03547 Membrane transport protein 6 148 4.5E-13 T 23-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 RD1_RS01490 8c136889c75ac1861fd3098955b3de83 309 PANTHER PTHR36838:SF1 1 309 7.6E-35 T 23-04-2016 RD1_RS09630 2b13f4b01daa5c9f62a5b22516327c75 217 Hamap MF_00494 Probable transaldolase [tal]. 1 214 45.413 T 23-04-2016 IPR022999 Transaldolase type 3B, putative GO:0004801 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RD1_RS09630 2b13f4b01daa5c9f62a5b22516327c75 217 ProSitePatterns PS00958 Transaldolase active site. 80 97 - T 23-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RD1_RS09630 2b13f4b01daa5c9f62a5b22516327c75 217 SUPERFAMILY SSF51569 1 214 4.03E-79 T 23-04-2016 RD1_RS09630 2b13f4b01daa5c9f62a5b22516327c75 217 Gene3D G3DSA:3.20.20.70 1 214 2.6E-74 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS09630 2b13f4b01daa5c9f62a5b22516327c75 217 Pfam PF00923 Transaldolase 3 212 4.8E-60 T 23-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RD1_RS09630 2b13f4b01daa5c9f62a5b22516327c75 217 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 211 1.6E-85 T 23-04-2016 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RD1_RS09630 2b13f4b01daa5c9f62a5b22516327c75 217 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 23-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RD1_RS09630 2b13f4b01daa5c9f62a5b22516327c75 217 PANTHER PTHR10683 1 217 4.3E-76 T 23-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RD1_RS16015 6dafaa062f546c586002678dcd236333 260 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS16015 6dafaa062f546c586002678dcd236333 260 SMART SM00382 32 217 6.9E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS16015 6dafaa062f546c586002678dcd236333 260 PANTHER PTHR24220:SF309 7 242 2.2E-85 T 23-04-2016 RD1_RS16015 6dafaa062f546c586002678dcd236333 260 Gene3D G3DSA:3.40.50.300 6 232 1.0E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16015 6dafaa062f546c586002678dcd236333 260 PANTHER PTHR24220 7 242 2.2E-85 T 23-04-2016 RD1_RS16015 6dafaa062f546c586002678dcd236333 260 Pfam PF00005 ABC transporter 23 172 3.8E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS16015 6dafaa062f546c586002678dcd236333 260 SUPERFAMILY SSF52540 8 232 3.66E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14205 4f34d3f3c92365a23fe9947cfd8848f2 323 PANTHER PTHR30349 8 321 1.4E-92 T 23-04-2016 RD1_RS14205 4f34d3f3c92365a23fe9947cfd8848f2 323 Pfam PF00589 Phage integrase family 112 292 2.1E-43 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RD1_RS14205 4f34d3f3c92365a23fe9947cfd8848f2 323 Gene3D G3DSA:1.10.443.10 112 299 2.3E-50 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RD1_RS14205 4f34d3f3c92365a23fe9947cfd8848f2 323 Gene3D G3DSA:1.10.150.130 6 99 1.2E-25 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal RD1_RS14205 4f34d3f3c92365a23fe9947cfd8848f2 323 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 4 307 27.219 T 23-04-2016 IPR023009 Tyrosine recombinase XerC/XerD RD1_RS14205 4f34d3f3c92365a23fe9947cfd8848f2 323 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 10 90 5.3E-17 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RD1_RS14205 4f34d3f3c92365a23fe9947cfd8848f2 323 PANTHER PTHR30349:SF5 8 321 1.4E-92 T 23-04-2016 RD1_RS14205 4f34d3f3c92365a23fe9947cfd8848f2 323 SUPERFAMILY SSF56349 6 297 1.15E-53 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RD1_RS01640 0729fc4097a98e1cb3d3eeae22c6c2f7 253 Pfam PF01261 Xylose isomerase-like TIM barrel 21 204 4.9E-24 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS01640 0729fc4097a98e1cb3d3eeae22c6c2f7 253 PIRSF PIRSF006241 1 252 5.6E-54 T 23-04-2016 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 RD1_RS01640 0729fc4097a98e1cb3d3eeae22c6c2f7 253 SUPERFAMILY SSF51658 1 245 3.04E-54 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS01640 0729fc4097a98e1cb3d3eeae22c6c2f7 253 PANTHER PTHR12110 1 229 1.3E-39 T 23-04-2016 RD1_RS01640 0729fc4097a98e1cb3d3eeae22c6c2f7 253 Gene3D G3DSA:3.20.20.150 1 246 1.6E-54 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS16610 2737b3e6264a88db06c5dedfba5e15ed 214 Pfam PF02581 Thiamine monophosphate synthase/TENI 11 192 5.6E-58 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS16610 2737b3e6264a88db06c5dedfba5e15ed 214 PANTHER PTHR20857:SF15 8 202 7.1E-61 T 23-04-2016 RD1_RS16610 2737b3e6264a88db06c5dedfba5e15ed 214 Gene3D G3DSA:3.20.20.70 6 206 4.5E-68 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS16610 2737b3e6264a88db06c5dedfba5e15ed 214 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 8 210 24.779 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS16610 2737b3e6264a88db06c5dedfba5e15ed 214 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 10 202 7.8E-59 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS16610 2737b3e6264a88db06c5dedfba5e15ed 214 SUPERFAMILY SSF51391 7 207 5.1E-59 T 23-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS16610 2737b3e6264a88db06c5dedfba5e15ed 214 PANTHER PTHR20857 8 202 7.1E-61 T 23-04-2016 RD1_RS16835 2cc6a82466cb2362a92370c7db632586 104 Gene3D G3DSA:1.20.1290.10 3 103 3.0E-13 T 23-04-2016 IPR029032 AhpD-like RD1_RS16835 2cc6a82466cb2362a92370c7db632586 104 SUPERFAMILY SSF69118 4 102 1.11E-14 T 23-04-2016 IPR029032 AhpD-like RD1_RS16835 2cc6a82466cb2362a92370c7db632586 104 Pfam PF02627 Carboxymuconolactone decarboxylase family 17 94 1.3E-7 T 23-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RD1_RS16835 2cc6a82466cb2362a92370c7db632586 104 PANTHER PTHR33930:SF2 1 103 1.6E-15 T 23-04-2016 RD1_RS16835 2cc6a82466cb2362a92370c7db632586 104 PANTHER PTHR33930 1 103 1.6E-15 T 23-04-2016 RD1_RS15960 94f0129f150ee684cfe9a55787a900cd 311 Pfam PF03547 Membrane transport protein 157 305 1.1E-18 T 23-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 RD1_RS15960 94f0129f150ee684cfe9a55787a900cd 311 Pfam PF03547 Membrane transport protein 7 148 4.8E-14 T 23-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 RD1_RS15960 94f0129f150ee684cfe9a55787a900cd 311 PANTHER PTHR36838 1 311 7.8E-42 T 23-04-2016 RD1_RS11920 d6309035f9acbedbbededbba366c4709 264 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 215 241 - T 23-04-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00557 RD1_RS11920 d6309035f9acbedbbededbba366c4709 264 PANTHER PTHR13773 10 253 4.4E-41 T 23-04-2016 RD1_RS11920 d6309035f9acbedbbededbba366c4709 264 PANTHER PTHR13773:SF0 10 253 4.4E-41 T 23-04-2016 RD1_RS11920 d6309035f9acbedbbededbba366c4709 264 Pfam PF01148 Cytidylyltransferase family 13 253 2.3E-47 T 23-04-2016 RD1_RS07785 c61593d7e1ca83f093b81a8f5d44c7e9 291 PANTHER PTHR23088 1 270 3.2E-64 T 23-04-2016 RD1_RS07785 c61593d7e1ca83f093b81a8f5d44c7e9 291 SUPERFAMILY SSF56317 2 266 3.92E-44 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS07785 c61593d7e1ca83f093b81a8f5d44c7e9 291 Gene3D G3DSA:3.60.110.10 6 269 1.5E-39 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS07785 c61593d7e1ca83f093b81a8f5d44c7e9 291 Pfam PF00795 Carbon-nitrogen hydrolase 21 214 8.1E-17 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RD1_RS07785 c61593d7e1ca83f093b81a8f5d44c7e9 291 PANTHER PTHR23088:SF12 1 270 3.2E-64 T 23-04-2016 RD1_RS09015 9db5fe7ccb599e93078758b9726413a9 307 SUPERFAMILY SSF55620 26 137 2.0E-21 T 23-04-2016 RD1_RS09015 9db5fe7ccb599e93078758b9726413a9 307 Gene3D G3DSA:3.30.1130.10 26 137 7.0E-27 T 23-04-2016 RD1_RS09015 9db5fe7ccb599e93078758b9726413a9 307 SMART SM00905 28 136 1.2E-23 T 23-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RD1_RS09015 9db5fe7ccb599e93078758b9726413a9 307 Pfam PF02152 Dihydroneopterin aldolase 28 134 7.5E-17 T 23-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RD1_RS19090 c20cb1dc04f61a6b97ad66676b0d8e23 377 PANTHER PTHR30024 5 375 6.6E-65 T 23-04-2016 RD1_RS19090 c20cb1dc04f61a6b97ad66676b0d8e23 377 Gene3D G3DSA:3.40.190.10 126 228 3.2E-4 T 23-04-2016 RD1_RS19090 c20cb1dc04f61a6b97ad66676b0d8e23 377 PANTHER PTHR30024:SF7 5 375 6.6E-65 T 23-04-2016 RD1_RS19090 c20cb1dc04f61a6b97ad66676b0d8e23 377 SUPERFAMILY SSF53850 4 239 9.59E-22 T 23-04-2016 RD1_RS19090 c20cb1dc04f61a6b97ad66676b0d8e23 377 Pfam PF13379 NMT1-like family 5 249 8.1E-58 T 23-04-2016 RD1_RS16305 efd4b79248398eedfd1400d9d6e5eac0 485 Gene3D G3DSA:1.20.1250.20 35 237 9.0E-9 T 23-04-2016 RD1_RS16305 efd4b79248398eedfd1400d9d6e5eac0 485 PANTHER PTHR23538 12 455 7.4E-67 T 23-04-2016 RD1_RS16305 efd4b79248398eedfd1400d9d6e5eac0 485 PIRSF PIRSF016565 16 464 2.9E-120 T 23-04-2016 IPR026036 PucC protein RD1_RS16305 efd4b79248398eedfd1400d9d6e5eac0 485 SUPERFAMILY SSF103473 35 456 1.31E-26 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS16305 efd4b79248398eedfd1400d9d6e5eac0 485 Gene3D G3DSA:1.20.1250.20 268 453 4.8E-11 T 23-04-2016 RD1_RS16305 efd4b79248398eedfd1400d9d6e5eac0 485 Pfam PF03209 PUCC protein 55 456 5.3E-137 T 23-04-2016 IPR004896 PucC-related RD1_RS07835 3f57884e9ef7befac6fb5faa85957ce7 449 PANTHER PTHR13932 8 445 4.0E-185 T 23-04-2016 RD1_RS07835 3f57884e9ef7befac6fb5faa85957ce7 449 PIRSF PIRSF000167 1 449 1.2E-168 T 23-04-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 RD1_RS07835 3f57884e9ef7befac6fb5faa85957ce7 449 SMART SM00729 46 267 6.4E-46 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RD1_RS07835 3f57884e9ef7befac6fb5faa85957ce7 449 Gene3D G3DSA:3.80.30.20 46 242 7.6E-24 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RD1_RS07835 3f57884e9ef7befac6fb5faa85957ce7 449 SUPERFAMILY SSF102114 5 438 7.59E-120 T 23-04-2016 RD1_RS07835 3f57884e9ef7befac6fb5faa85957ce7 449 Pfam PF06969 HemN C-terminal domain 358 424 3.1E-9 T 23-04-2016 IPR010723 HemN, C-terminal RD1_RS07835 3f57884e9ef7befac6fb5faa85957ce7 449 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 6 444 3.4E-136 T 23-04-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 RD1_RS07835 3f57884e9ef7befac6fb5faa85957ce7 449 PANTHER PTHR13932:SF6 8 445 4.0E-185 T 23-04-2016 RD1_RS07835 3f57884e9ef7befac6fb5faa85957ce7 449 Pfam PF04055 Radical SAM superfamily 52 223 5.3E-19 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RD1_RS17200 450bae8d212ab5b7457442e066cafbf8 305 Pfam PF02574 Homocysteine S-methyltransferase 70 302 1.9E-29 T 23-04-2016 IPR003726 Homocysteine-binding domain RD1_RS17200 450bae8d212ab5b7457442e066cafbf8 305 Gene3D G3DSA:3.20.20.330 5 304 2.3E-35 T 23-04-2016 IPR003726 Homocysteine-binding domain RD1_RS17200 450bae8d212ab5b7457442e066cafbf8 305 SUPERFAMILY SSF82282 6 304 5.76E-49 T 23-04-2016 IPR003726 Homocysteine-binding domain RD1_RS17200 450bae8d212ab5b7457442e066cafbf8 305 PANTHER PTHR11103:SF7 1 304 6.5E-36 T 23-04-2016 RD1_RS17200 450bae8d212ab5b7457442e066cafbf8 305 PANTHER PTHR11103 1 304 6.5E-36 T 23-04-2016 RD1_RS18630 a5ca5ee417af619cea69848a9b84032c 360 Pfam PF02653 Branched-chain amino acid transport system / permease component 64 342 2.7E-39 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS18630 a5ca5ee417af619cea69848a9b84032c 360 PANTHER PTHR32196:SF30 1 358 9.7E-58 T 23-04-2016 RD1_RS18630 a5ca5ee417af619cea69848a9b84032c 360 PANTHER PTHR32196 1 358 9.7E-58 T 23-04-2016 RD1_RS02445 e744c48aca0517e57fd68413b8b1af19 329 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 38 169 1.3E-63 T 23-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 RD1_RS02445 e744c48aca0517e57fd68413b8b1af19 329 PIRSF PIRSF002849 1 329 4.0E-126 T 23-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted RD1_RS02445 e744c48aca0517e57fd68413b8b1af19 329 Gene3D G3DSA:3.40.50.300 18 182 1.2E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02445 e744c48aca0517e57fd68413b8b1af19 329 PANTHER PTHR11603 1 328 2.2E-132 T 23-04-2016 RD1_RS02445 e744c48aca0517e57fd68413b8b1af19 329 PANTHER PTHR11603:SF148 1 328 2.2E-132 T 23-04-2016 RD1_RS02445 e744c48aca0517e57fd68413b8b1af19 329 SUPERFAMILY SSF52540 7 305 9.91E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02445 e744c48aca0517e57fd68413b8b1af19 329 Gene3D G3DSA:1.10.8.300 211 326 2.7E-40 T 23-04-2016 RD1_RS07790 70cdfa5c32644e216ff971889edb8429 72 Pfam PF01176 Translation initiation factor 1A / IF-1 8 70 9.7E-27 T 23-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 RD1_RS07790 70cdfa5c32644e216ff971889edb8429 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 26.625 T 23-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RD1_RS07790 70cdfa5c32644e216ff971889edb8429 72 PANTHER PTHR33370 1 72 7.1E-40 T 23-04-2016 RD1_RS07790 70cdfa5c32644e216ff971889edb8429 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 3.1E-32 T 23-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RD1_RS07790 70cdfa5c32644e216ff971889edb8429 72 SUPERFAMILY SSF50249 1 71 1.32E-26 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS07790 70cdfa5c32644e216ff971889edb8429 72 SMART SM00316 4 72 0.0028 T 23-04-2016 IPR022967 RNA-binding domain, S1 RD1_RS07790 70cdfa5c32644e216ff971889edb8429 72 Gene3D G3DSA:2.40.50.140 1 72 2.9E-38 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS05200 161a55d462d32700c98c79da0faf588f 73 PANTHER PTHR35530:SF1 1 72 4.8E-16 T 23-04-2016 RD1_RS05200 161a55d462d32700c98c79da0faf588f 73 Pfam PF01361 Tautomerase enzyme 2 66 2.0E-18 T 23-04-2016 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 RD1_RS05200 161a55d462d32700c98c79da0faf588f 73 SUPERFAMILY SSF55331 2 69 1.28E-16 T 23-04-2016 IPR014347 Tautomerase/MIF superfamily RD1_RS05200 161a55d462d32700c98c79da0faf588f 73 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 69 4.8E-18 T 23-04-2016 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 RD1_RS05200 161a55d462d32700c98c79da0faf588f 73 Gene3D G3DSA:3.30.429.20 1 65 1.4E-23 T 23-04-2016 RD1_RS05200 161a55d462d32700c98c79da0faf588f 73 PANTHER PTHR35530 1 72 4.8E-16 T 23-04-2016 RD1_RS01855 ca4f9c5b783ec2588d0a458a47e839a7 272 PANTHER PTHR13090 64 265 5.4E-66 T 23-04-2016 RD1_RS01855 ca4f9c5b783ec2588d0a458a47e839a7 272 SUPERFAMILY SSF53335 67 193 3.46E-14 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS01855 ca4f9c5b783ec2588d0a458a47e839a7 272 Gene3D G3DSA:3.40.50.150 68 240 2.1E-15 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS01855 ca4f9c5b783ec2588d0a458a47e839a7 272 Pfam PF08241 Methyltransferase domain 59 115 2.2E-5 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RD1_RS07795 8c51a1a5511b28183b94ac978fda538b 188 Hamap MF_00528 Septum formation protein Maf [maf]. 1 186 28.43 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 RD1_RS07795 8c51a1a5511b28183b94ac978fda538b 188 Gene3D G3DSA:3.90.950.10 2 184 1.1E-58 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RD1_RS07795 8c51a1a5511b28183b94ac978fda538b 188 Pfam PF02545 Maf-like protein 2 180 2.0E-49 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 RD1_RS07795 8c51a1a5511b28183b94ac978fda538b 188 PIRSF PIRSF006305 1 187 1.0E-47 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 RD1_RS07795 8c51a1a5511b28183b94ac978fda538b 188 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 180 2.2E-43 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 RD1_RS07795 8c51a1a5511b28183b94ac978fda538b 188 SUPERFAMILY SSF52972 2 180 9.81E-55 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RD1_RS00420 55dc43b410875c1b00ac59019d8ba286 253 Gene3D G3DSA:2.40.160.20 96 155 6.4E-4 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RD1_RS00420 55dc43b410875c1b00ac59019d8ba286 253 Gene3D G3DSA:2.40.160.20 192 234 6.4E-4 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RD1_RS01020 f8d7ad7050523807ab3c12ce6fe49aa7 307 Gene3D G3DSA:3.40.1190.20 2 301 3.3E-70 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS01020 f8d7ad7050523807ab3c12ce6fe49aa7 307 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 242 255 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RD1_RS01020 f8d7ad7050523807ab3c12ce6fe49aa7 307 SUPERFAMILY SSF53613 11 298 2.03E-65 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS01020 f8d7ad7050523807ab3c12ce6fe49aa7 307 PANTHER PTHR10584 1 301 1.6E-51 T 23-04-2016 RD1_RS01020 f8d7ad7050523807ab3c12ce6fe49aa7 307 Pfam PF00294 pfkB family carbohydrate kinase 14 290 3.2E-49 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RD1_RS03615 b6cfe48d6988a34473791096bc47c48d 220 SUPERFAMILY SSF46785 149 217 9.08E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03615 b6cfe48d6988a34473791096bc47c48d 220 Gene3D G3DSA:1.10.10.10 150 217 3.0E-13 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03615 b6cfe48d6988a34473791096bc47c48d 220 SMART SM00419 161 209 5.5E-7 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RD1_RS03615 b6cfe48d6988a34473791096bc47c48d 220 Pfam PF00027 Cyclic nucleotide-binding domain 30 118 1.0E-8 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS03615 b6cfe48d6988a34473791096bc47c48d 220 Pfam PF13545 Crp-like helix-turn-helix domain 152 216 7.1E-14 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RD1_RS03615 b6cfe48d6988a34473791096bc47c48d 220 SUPERFAMILY SSF51206 13 146 6.15E-24 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RD1_RS03615 b6cfe48d6988a34473791096bc47c48d 220 Gene3D G3DSA:2.60.120.10 9 146 4.7E-23 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS03615 b6cfe48d6988a34473791096bc47c48d 220 PANTHER PTHR24567 10 215 1.9E-32 T 23-04-2016 RD1_RS03615 b6cfe48d6988a34473791096bc47c48d 220 PANTHER PTHR24567:SF29 10 215 1.9E-32 T 23-04-2016 RD1_RS01085 bb1983661bc26d77350cc9db7e5c61a7 347 SUPERFAMILY SSF53822 67 316 3.19E-45 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS01085 bb1983661bc26d77350cc9db7e5c61a7 347 Gene3D G3DSA:3.40.50.2300 176 341 1.2E-30 T 23-04-2016 RD1_RS01085 bb1983661bc26d77350cc9db7e5c61a7 347 Pfam PF00356 Bacterial regulatory proteins, lacI family 10 55 6.3E-18 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS01085 bb1983661bc26d77350cc9db7e5c61a7 347 Gene3D G3DSA:3.40.50.2300 66 175 5.3E-32 T 23-04-2016 RD1_RS01085 bb1983661bc26d77350cc9db7e5c61a7 347 SUPERFAMILY SSF47413 8 65 2.91E-17 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS01085 bb1983661bc26d77350cc9db7e5c61a7 347 SMART SM00354 8 78 2.7E-26 T 23-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RD1_RS01085 bb1983661bc26d77350cc9db7e5c61a7 347 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 69 313 5.4E-22 T 23-04-2016 IPR001761 Periplasmic binding protein/LacI sugar binding domain RD1_RS01085 bb1983661bc26d77350cc9db7e5c61a7 347 PANTHER PTHR30146:SF2 7 314 5.4E-95 T 23-04-2016 RD1_RS01085 bb1983661bc26d77350cc9db7e5c61a7 347 PANTHER PTHR30146 7 314 5.4E-95 T 23-04-2016 RD1_RS01085 bb1983661bc26d77350cc9db7e5c61a7 347 Gene3D G3DSA:1.10.260.40 8 65 9.0E-24 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS00920 61e1d1b1440ab769e3aadd3702a3c087 187 PANTHER PTHR10245 4 184 5.0E-35 T 23-04-2016 RD1_RS00920 61e1d1b1440ab769e3aadd3702a3c087 187 Gene3D G3DSA:1.10.260.40 6 79 6.3E-22 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS00920 61e1d1b1440ab769e3aadd3702a3c087 187 Pfam PF01381 Helix-turn-helix 16 69 1.7E-14 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS00920 61e1d1b1440ab769e3aadd3702a3c087 187 PANTHER PTHR10245:SF9 4 184 5.0E-35 T 23-04-2016 RD1_RS00920 61e1d1b1440ab769e3aadd3702a3c087 187 SMART SM00530 15 70 4.7E-14 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS00920 61e1d1b1440ab769e3aadd3702a3c087 187 SUPERFAMILY SSF51182 63 184 1.12E-19 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS00920 61e1d1b1440ab769e3aadd3702a3c087 187 Pfam PF07883 Cupin domain 128 180 1.1E-6 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RD1_RS00920 61e1d1b1440ab769e3aadd3702a3c087 187 SUPERFAMILY SSF47413 11 73 8.16E-17 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS00920 61e1d1b1440ab769e3aadd3702a3c087 187 Gene3D G3DSA:2.60.120.10 98 183 5.6E-21 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS07390 778ea0e471c15db6905102b7f98dab76 205 Gene3D G3DSA:2.30.110.10 28 151 2.2E-22 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS07390 778ea0e471c15db6905102b7f98dab76 205 SUPERFAMILY SSF50475 26 142 2.55E-19 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS07390 778ea0e471c15db6905102b7f98dab76 205 TIGRFAM TIGR04025 PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase, FMN-binding family 12 205 3.9E-73 T 23-04-2016 IPR024029 Pyridoxamine 5-phosphate oxidase, FMN-dependent RD1_RS07390 778ea0e471c15db6905102b7f98dab76 205 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 33 125 5.5E-12 T 23-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RD1_RS07390 778ea0e471c15db6905102b7f98dab76 205 PANTHER PTHR30212:SF4 8 205 7.0E-58 T 23-04-2016 RD1_RS07390 778ea0e471c15db6905102b7f98dab76 205 PANTHER PTHR30212 8 205 7.0E-58 T 23-04-2016 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 7 415 4.6E-142 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 SUPERFAMILY SSF50621 257 418 1.34E-53 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 Gene3D G3DSA:2.40.37.10 270 419 2.1E-46 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 PANTHER PTHR11482:SF5 1 413 9.5E-157 T 23-04-2016 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 Gene3D G3DSA:3.20.20.10 36 269 6.3E-78 T 23-04-2016 IPR029066 PLP-binding barrel RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 226 241 - T 23-04-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 383 405 2.6E-25 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 164 173 2.6E-25 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 75 92 2.6E-25 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 300 318 2.6E-25 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 416 39.672 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 SUPERFAMILY SSF51419 26 284 8.51E-78 T 23-04-2016 IPR029066 PLP-binding barrel RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 PANTHER PTHR11482 1 413 9.5E-157 T 23-04-2016 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 288 392 1.3E-15 T 23-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 77 89 3.1E-21 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 373 386 3.1E-21 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 75 3.1E-21 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 272 291 3.1E-21 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 190 203 3.1E-21 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RD1_RS07360 9a1d77def7488062f86015d30d94fbe2 421 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 42 282 1.1E-58 T 23-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 RD1_RS04800 403aa0af5b1ed940e8e9ec2393ff863d 209 SUPERFAMILY SSF55895 22 206 1.7E-39 T 23-04-2016 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 RD1_RS04800 403aa0af5b1ed940e8e9ec2393ff863d 209 PANTHER PTHR11240 1 207 1.0E-19 T 23-04-2016 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 RD1_RS04800 403aa0af5b1ed940e8e9ec2393ff863d 209 ProSitePatterns PS00530 Ribonuclease T2 family histidine active site 1. 58 65 - T 23-04-2016 IPR018188 Ribonuclease T2, His active site 1 GO:0003723|GO:0033897 RD1_RS04800 403aa0af5b1ed940e8e9ec2393ff863d 209 Gene3D G3DSA:3.90.730.10 21 207 2.3E-36 T 23-04-2016 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 RD1_RS04800 403aa0af5b1ed940e8e9ec2393ff863d 209 Pfam PF00445 Ribonuclease T2 family 26 190 1.1E-14 T 23-04-2016 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 RD1_RS16130 33b9e2030ab1a234808858850ecd34c5 451 SUPERFAMILY SSF48264 19 451 6.16E-107 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS16130 33b9e2030ab1a234808858850ecd34c5 451 Gene3D G3DSA:1.10.630.10 19 450 4.7E-108 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS16130 33b9e2030ab1a234808858850ecd34c5 451 Pfam PF00067 Cytochrome P450 23 430 1.6E-71 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS16130 33b9e2030ab1a234808858850ecd34c5 451 PANTHER PTHR24286 9 448 2.0E-114 T 23-04-2016 RD1_RS16130 33b9e2030ab1a234808858850ecd34c5 451 PRINTS PR00385 P450 superfamily signature 264 281 6.0E-7 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS16130 33b9e2030ab1a234808858850ecd34c5 451 PRINTS PR00385 P450 superfamily signature 391 400 6.0E-7 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS16130 33b9e2030ab1a234808858850ecd34c5 451 PRINTS PR00385 P450 superfamily signature 400 411 6.0E-7 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS16130 33b9e2030ab1a234808858850ecd34c5 451 PRINTS PR00385 P450 superfamily signature 315 326 6.0E-7 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS16130 33b9e2030ab1a234808858850ecd34c5 451 PRINTS PR00465 E-class P450 group IV signature 310 326 1.3E-19 T 23-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS16130 33b9e2030ab1a234808858850ecd34c5 451 PRINTS PR00465 E-class P450 group IV signature 343 357 1.3E-19 T 23-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS16130 33b9e2030ab1a234808858850ecd34c5 451 PRINTS PR00465 E-class P450 group IV signature 359 377 1.3E-19 T 23-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS16130 33b9e2030ab1a234808858850ecd34c5 451 PRINTS PR00465 E-class P450 group IV signature 384 400 1.3E-19 T 23-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS16130 33b9e2030ab1a234808858850ecd34c5 451 PRINTS PR00465 E-class P450 group IV signature 400 418 1.3E-19 T 23-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS16130 33b9e2030ab1a234808858850ecd34c5 451 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 393 402 - T 23-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 RD1_RS09200 7b0e32aeef362c0ba637a44731107b87 398 PIRSF PIRSF026508 1 386 3.7E-110 T 23-04-2016 IPR008863 Toxic anion resistance RD1_RS09200 7b0e32aeef362c0ba637a44731107b87 398 Pfam PF05816 Toxic anion resistance protein (TelA) 50 379 1.4E-108 T 23-04-2016 IPR008863 Toxic anion resistance RD1_RS09200 7b0e32aeef362c0ba637a44731107b87 398 PANTHER PTHR38432:SF1 53 389 1.9E-59 T 23-04-2016 RD1_RS09200 7b0e32aeef362c0ba637a44731107b87 398 PANTHER PTHR38432 53 389 1.9E-59 T 23-04-2016 RD1_RS17800 5acfd03424eaedd0c3d23056acb5d2c0 144 PANTHER PTHR31690 1 143 2.0E-44 T 23-04-2016 RD1_RS17800 5acfd03424eaedd0c3d23056acb5d2c0 144 Pfam PF05025 RbsD / FucU transport protein family 4 140 1.1E-36 T 23-04-2016 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 RD1_RS17800 5acfd03424eaedd0c3d23056acb5d2c0 144 Gene3D G3DSA:3.40.1650.10 1 142 2.2E-49 T 23-04-2016 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 RD1_RS17800 5acfd03424eaedd0c3d23056acb5d2c0 144 SUPERFAMILY SSF102546 1 141 3.66E-42 T 23-04-2016 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 RD1_RS15945 c555bf1d4c761dccb704219699f371e2 368 PANTHER PTHR11669:SF8 13 238 6.9E-53 T 23-04-2016 RD1_RS15945 c555bf1d4c761dccb704219699f371e2 368 SUPERFAMILY SSF52540 18 239 8.9E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15945 c555bf1d4c761dccb704219699f371e2 368 SMART SM00382 38 200 6.3E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS15945 c555bf1d4c761dccb704219699f371e2 368 PANTHER PTHR11669 13 238 6.9E-53 T 23-04-2016 RD1_RS15945 c555bf1d4c761dccb704219699f371e2 368 Pfam PF13177 DNA polymerase III, delta subunit 22 200 2.4E-37 T 23-04-2016 RD1_RS15945 c555bf1d4c761dccb704219699f371e2 368 Gene3D G3DSA:3.40.50.300 18 199 1.4E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 PANTHER PTHR10025 10 283 4.9E-90 T 23-04-2016 RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 31 53 1.3E-63 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 152 172 1.3E-63 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 201 230 1.3E-63 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 257 275 1.3E-63 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 72 99 1.3E-63 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 240 256 1.3E-63 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 107 128 1.3E-63 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 122 283 2.5E-59 T 23-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 SUPERFAMILY SSF51735 121 282 4.6E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 Gene3D G3DSA:3.40.192.10 9 137 4.0E-30 T 23-04-2016 RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 Gene3D G3DSA:3.40.50.720 138 265 2.8E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 7 118 2.7E-24 T 23-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 SUPERFAMILY SSF53223 7 119 4.03E-25 T 23-04-2016 RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 PANTHER PTHR10025:SF5 10 283 4.9E-90 T 23-04-2016 RD1_RS19390 7204f6eb4a0270aac8b9a55258d21112 290 Hamap MF_01576 Bifunctional protein FolD [folD]. 4 284 31.95 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RD1_RS18910 d3f22d539980ea9eb7da9062fb93abf1 345 Gene3D G3DSA:3.40.800.20 26 339 6.4E-72 T 23-04-2016 IPR023801 Histone deacetylase domain RD1_RS18910 d3f22d539980ea9eb7da9062fb93abf1 345 Pfam PF00850 Histone deacetylase domain 28 337 5.6E-62 T 23-04-2016 IPR023801 Histone deacetylase domain RD1_RS18910 d3f22d539980ea9eb7da9062fb93abf1 345 SUPERFAMILY SSF52768 26 340 6.23E-85 T 23-04-2016 RD1_RS18910 d3f22d539980ea9eb7da9062fb93abf1 345 PANTHER PTHR10625:SF121 27 75 7.5E-82 T 23-04-2016 RD1_RS18910 d3f22d539980ea9eb7da9062fb93abf1 345 PANTHER PTHR10625:SF121 99 336 7.5E-82 T 23-04-2016 RD1_RS18910 d3f22d539980ea9eb7da9062fb93abf1 345 PRINTS PR01270 Histone deacetylase superfamily signature 274 284 5.2E-14 T 23-04-2016 IPR000286 Histone deacetylase superfamily RD1_RS18910 d3f22d539980ea9eb7da9062fb93abf1 345 PRINTS PR01270 Histone deacetylase superfamily signature 188 203 5.2E-14 T 23-04-2016 IPR000286 Histone deacetylase superfamily RD1_RS18910 d3f22d539980ea9eb7da9062fb93abf1 345 PRINTS PR01270 Histone deacetylase superfamily signature 155 178 5.2E-14 T 23-04-2016 IPR000286 Histone deacetylase superfamily RD1_RS18910 d3f22d539980ea9eb7da9062fb93abf1 345 PANTHER PTHR10625 27 75 7.5E-82 T 23-04-2016 IPR000286 Histone deacetylase superfamily RD1_RS18910 d3f22d539980ea9eb7da9062fb93abf1 345 PANTHER PTHR10625 99 336 7.5E-82 T 23-04-2016 IPR000286 Histone deacetylase superfamily RD1_RS03510 2ea0745b9237d3969d5721b8305ff4e6 484 PANTHER PTHR30354:SF7 1 483 5.7E-180 T 23-04-2016 RD1_RS03510 2ea0745b9237d3969d5721b8305ff4e6 484 Pfam PF02447 GntP family permease 3 478 1.7E-4 T 23-04-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RD1_RS03510 2ea0745b9237d3969d5721b8305ff4e6 484 PANTHER PTHR30354 1 483 5.7E-180 T 23-04-2016 RD1_RS02940 b2aa5f9f5f5e283fab48a42216e09388 145 Gene3D G3DSA:3.40.50.620 1 145 1.1E-25 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS02940 b2aa5f9f5f5e283fab48a42216e09388 145 PANTHER PTHR31964 1 145 5.6E-17 T 23-04-2016 RD1_RS02940 b2aa5f9f5f5e283fab48a42216e09388 145 SUPERFAMILY SSF52402 1 145 3.6E-25 T 23-04-2016 RD1_RS02940 b2aa5f9f5f5e283fab48a42216e09388 145 PANTHER PTHR31964:SF42 1 145 5.6E-17 T 23-04-2016 RD1_RS02940 b2aa5f9f5f5e283fab48a42216e09388 145 PRINTS PR01438 Universal stress protein signature 123 145 2.8E-7 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS02940 b2aa5f9f5f5e283fab48a42216e09388 145 PRINTS PR01438 Universal stress protein signature 105 117 2.8E-7 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS02940 b2aa5f9f5f5e283fab48a42216e09388 145 PRINTS PR01438 Universal stress protein signature 2 20 2.8E-7 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS02940 b2aa5f9f5f5e283fab48a42216e09388 145 Pfam PF00582 Universal stress protein family 1 145 1.1E-22 T 23-04-2016 IPR006016 UspA GO:0006950 RD1_RS13540 4f374fcbdd26ee2d562ffba2b654ffb6 334 PANTHER PTHR30006:SF10 87 332 3.7E-31 T 23-04-2016 RD1_RS13540 4f374fcbdd26ee2d562ffba2b654ffb6 334 SUPERFAMILY SSF53850 37 284 3.52E-27 T 23-04-2016 RD1_RS13540 4f374fcbdd26ee2d562ffba2b654ffb6 334 Gene3D G3DSA:3.40.190.10 6 128 2.4E-28 T 23-04-2016 RD1_RS13540 4f374fcbdd26ee2d562ffba2b654ffb6 334 Gene3D G3DSA:3.40.190.10 269 328 2.4E-28 T 23-04-2016 RD1_RS13540 4f374fcbdd26ee2d562ffba2b654ffb6 334 Gene3D G3DSA:3.40.190.10 130 268 7.4E-56 T 23-04-2016 RD1_RS13540 4f374fcbdd26ee2d562ffba2b654ffb6 334 PANTHER PTHR30006 87 332 3.7E-31 T 23-04-2016 RD1_RS05920 232338802e22167f0b72bf78c8f6c832 297 PRINTS PR00073 Coprogen oxidase signature 254 281 4.0E-60 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05920 232338802e22167f0b72bf78c8f6c832 297 PRINTS PR00073 Coprogen oxidase signature 282 297 4.0E-60 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05920 232338802e22167f0b72bf78c8f6c832 297 PRINTS PR00073 Coprogen oxidase signature 115 139 4.0E-60 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05920 232338802e22167f0b72bf78c8f6c832 297 PRINTS PR00073 Coprogen oxidase signature 182 211 4.0E-60 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05920 232338802e22167f0b72bf78c8f6c832 297 PRINTS PR00073 Coprogen oxidase signature 145 167 4.0E-60 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05920 232338802e22167f0b72bf78c8f6c832 297 PRINTS PR00073 Coprogen oxidase signature 67 88 4.0E-60 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05920 232338802e22167f0b72bf78c8f6c832 297 SUPERFAMILY SSF102886 3 296 2.22E-108 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05920 232338802e22167f0b72bf78c8f6c832 297 PIRSF PIRSF000166 1 297 4.9E-111 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05920 232338802e22167f0b72bf78c8f6c832 297 Gene3D G3DSA:3.40.1500.10 3 296 3.1E-107 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05920 232338802e22167f0b72bf78c8f6c832 297 PANTHER PTHR10755 9 296 1.4E-108 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05920 232338802e22167f0b72bf78c8f6c832 297 Pfam PF01218 Coproporphyrinogen III oxidase 13 296 2.8E-91 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RD1_RS05140 e66cf8bd6fbf473b2308453c536f9b1d 283 SUPERFAMILY SSF103481 32 134 7.59E-13 T 23-04-2016 RD1_RS05140 e66cf8bd6fbf473b2308453c536f9b1d 283 TIGRFAM TIGR00688 rarD: protein RarD 3 247 2.1E-54 T 23-04-2016 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 RD1_RS05140 e66cf8bd6fbf473b2308453c536f9b1d 283 PANTHER PTHR22911 1 282 1.3E-96 T 23-04-2016 RD1_RS05140 e66cf8bd6fbf473b2308453c536f9b1d 283 PANTHER PTHR22911:SF41 1 282 1.3E-96 T 23-04-2016 RD1_RS05140 e66cf8bd6fbf473b2308453c536f9b1d 283 Pfam PF00892 EamA-like transporter family 2 131 1.1E-11 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS05140 e66cf8bd6fbf473b2308453c536f9b1d 283 SUPERFAMILY SSF103481 196 272 1.83E-7 T 23-04-2016 RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 1.0E-124 T 23-04-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 PIRSF PIRSF000149 1 334 1.0E-128 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 2.5E-35 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 145 163 2.5E-35 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 2.5E-35 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 2.5E-35 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 172 188 2.5E-35 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 PANTHER PTHR10836:SF50 1 335 2.2E-183 T 23-04-2016 RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 149 156 - T 23-04-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 SUPERFAMILY SSF51735 4 165 6.3E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 Gene3D G3DSA:3.30.360.10 160 314 3.9E-69 T 23-04-2016 RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 SUPERFAMILY SSF55347 151 313 9.67E-68 T 23-04-2016 RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 151 1.6E-53 T 23-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 Gene3D G3DSA:3.40.50.720 2 159 6.9E-69 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 156 312 1.2E-61 T 23-04-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 PANTHER PTHR10836 1 335 2.2E-183 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS13265 d1deae0fdcb68564a42d15d1a9b9114c 335 SMART SM00846 3 151 1.0E-87 T 23-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 RD1_RS09855 c0d314c76179d3e882780659b259244f 473 Pfam PF01523 Putative modulator of DNA gyrase 33 323 1.5E-60 T 23-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RD1_RS09855 c0d314c76179d3e882780659b259244f 473 PANTHER PTHR30624:SF4 7 473 4.5E-198 T 23-04-2016 RD1_RS09855 c0d314c76179d3e882780659b259244f 473 PANTHER PTHR30624 7 473 4.5E-198 T 23-04-2016 RD1_RS09855 c0d314c76179d3e882780659b259244f 473 PIRSF PIRSF004919 12 472 1.1E-128 T 23-04-2016 IPR025502 TldD KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RD1_RS09855 c0d314c76179d3e882780659b259244f 473 SUPERFAMILY SSF111283 17 469 2.49E-124 T 23-04-2016 RD1_RS00825 be42ea3987cf2bff130e00f8e79384a8 392 PANTHER PTHR30193:SF20 133 391 2.7E-76 T 23-04-2016 RD1_RS00825 be42ea3987cf2bff130e00f8e79384a8 392 PANTHER PTHR30193 133 391 2.7E-76 T 23-04-2016 RD1_RS00825 be42ea3987cf2bff130e00f8e79384a8 392 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 203 384 4.6E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00825 be42ea3987cf2bff130e00f8e79384a8 392 Gene3D G3DSA:1.10.3720.10 128 385 1.7E-54 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00825 be42ea3987cf2bff130e00f8e79384a8 392 SUPERFAMILY SSF161098 126 386 5.34E-54 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS02535 d35c737c3882f5a0b4907b32f18f5ec2 293 Pfam PF01758 Sodium Bile acid symporter family 11 180 6.1E-36 T 23-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RD1_RS02535 d35c737c3882f5a0b4907b32f18f5ec2 293 PANTHER PTHR10361 9 279 7.8E-75 T 23-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RD1_RS06140 b437df6ca3806eb6e06b09a39910bff5 302 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 302 94.646 T 23-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 RD1_RS06140 b437df6ca3806eb6e06b09a39910bff5 302 PANTHER PTHR34308:SF1 1 301 1.7E-77 T 23-04-2016 RD1_RS06140 b437df6ca3806eb6e06b09a39910bff5 302 Pfam PF03186 CobD/Cbib protein 7 283 1.5E-92 T 23-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 RD1_RS06140 b437df6ca3806eb6e06b09a39910bff5 302 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 4 254 3.4E-58 T 23-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 RD1_RS06140 b437df6ca3806eb6e06b09a39910bff5 302 PANTHER PTHR34308 1 301 1.7E-77 T 23-04-2016 RD1_RS10195 d911eccb3dc6ebe68f89f8606d5ff9e5 206 PANTHER PTHR30055 18 205 4.2E-21 T 23-04-2016 RD1_RS10195 d911eccb3dc6ebe68f89f8606d5ff9e5 206 Gene3D G3DSA:1.10.357.10 9 200 5.2E-36 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RD1_RS10195 d911eccb3dc6ebe68f89f8606d5ff9e5 206 PANTHER PTHR30055:SF23 18 205 4.2E-21 T 23-04-2016 RD1_RS10195 d911eccb3dc6ebe68f89f8606d5ff9e5 206 SUPERFAMILY SSF48498 94 198 9.23E-19 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RD1_RS10195 d911eccb3dc6ebe68f89f8606d5ff9e5 206 Pfam PF13305 WHG domain 97 180 1.5E-16 T 23-04-2016 IPR025996 WHG domain RD1_RS10195 d911eccb3dc6ebe68f89f8606d5ff9e5 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 9.3E-5 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS10195 d911eccb3dc6ebe68f89f8606d5ff9e5 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 9.3E-5 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS10195 d911eccb3dc6ebe68f89f8606d5ff9e5 206 SUPERFAMILY SSF46689 12 82 7.98E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS10195 d911eccb3dc6ebe68f89f8606d5ff9e5 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 2.3E-9 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RD1_RS00255 8e6a8c1d9df404af50914c98e4d74f2e 347 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 10 343 3.4E-137 T 23-04-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 RD1_RS00255 8e6a8c1d9df404af50914c98e4d74f2e 347 PANTHER PTHR30002 1 347 4.4E-138 T 23-04-2016 RD1_RS00255 8e6a8c1d9df404af50914c98e4d74f2e 347 SUPERFAMILY SSF46548 162 252 8.37E-17 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RD1_RS00255 8e6a8c1d9df404af50914c98e4d74f2e 347 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 1 311 47.063 T 23-04-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 RD1_RS00255 8e6a8c1d9df404af50914c98e4d74f2e 347 Gene3D G3DSA:3.30.70.20 187 257 1.4E-7 T 23-04-2016 RD1_RS00255 8e6a8c1d9df404af50914c98e4d74f2e 347 Pfam PF13484 4Fe-4S double cluster binding domain 188 252 2.1E-19 T 23-04-2016 RD1_RS00255 8e6a8c1d9df404af50914c98e4d74f2e 347 Pfam PF08331 Domain of unknown function (DUF1730) 57 136 2.2E-26 T 23-04-2016 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700|UniPathway: UPA00392 RD1_RS00255 8e6a8c1d9df404af50914c98e4d74f2e 347 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 189 200 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RD1_RS00255 8e6a8c1d9df404af50914c98e4d74f2e 347 PANTHER PTHR30002:SF4 1 347 4.4E-138 T 23-04-2016 RD1_RS12345 da7447a474c82d520a868a6590325b9d 301 PANTHER PTHR12544 4 301 1.3E-112 T 23-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 RD1_RS12345 da7447a474c82d520a868a6590325b9d 301 Pfam PF04960 Glutaminase 20 301 6.2E-105 T 23-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 RD1_RS12345 da7447a474c82d520a868a6590325b9d 301 SUPERFAMILY SSF56601 3 301 7.78E-99 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS12345 da7447a474c82d520a868a6590325b9d 301 Gene3D G3DSA:3.40.710.10 3 301 3.8E-111 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS12345 da7447a474c82d520a868a6590325b9d 301 Hamap MF_00313 Glutaminase [glsA]. 2 301 41.54 T 23-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 RD1_RS12345 da7447a474c82d520a868a6590325b9d 301 TIGRFAM TIGR03814 Gln_ase: glutaminase A 6 301 3.6E-114 T 23-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 RD1_RS01355 b274cfec1e22e63932bb5b8025536266 264 Gene3D G3DSA:3.30.540.10 5 154 3.2E-39 T 23-04-2016 RD1_RS01355 b274cfec1e22e63932bb5b8025536266 264 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 1.5E-21 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS01355 b274cfec1e22e63932bb5b8025536266 264 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 1.5E-21 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS01355 b274cfec1e22e63932bb5b8025536266 264 PRINTS PR00377 Inositol monophosphatase superfamily signature 202 226 1.5E-21 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS01355 b274cfec1e22e63932bb5b8025536266 264 PRINTS PR00377 Inositol monophosphatase superfamily signature 82 98 1.5E-21 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS01355 b274cfec1e22e63932bb5b8025536266 264 PRINTS PR00377 Inositol monophosphatase superfamily signature 131 154 1.5E-21 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS01355 b274cfec1e22e63932bb5b8025536266 264 SUPERFAMILY SSF56655 4 256 2.23E-63 T 23-04-2016 RD1_RS01355 b274cfec1e22e63932bb5b8025536266 264 PANTHER PTHR20854 6 259 5.9E-49 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS01355 b274cfec1e22e63932bb5b8025536266 264 Pfam PF00459 Inositol monophosphatase family 18 239 5.2E-43 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RD1_RS01355 b274cfec1e22e63932bb5b8025536266 264 Gene3D G3DSA:3.40.190.80 180 257 4.3E-19 T 23-04-2016 RD1_RS01355 b274cfec1e22e63932bb5b8025536266 264 PANTHER PTHR20854:SF4 6 259 5.9E-49 T 23-04-2016 RD1_RS13755 c55cf96f2e61e742078bae22ca3ea3c5 499 Pfam PF00171 Aldehyde dehydrogenase family 15 479 6.9E-139 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RD1_RS13755 c55cf96f2e61e742078bae22ca3ea3c5 499 PANTHER PTHR11699 1 499 3.5E-274 T 23-04-2016 RD1_RS13755 c55cf96f2e61e742078bae22ca3ea3c5 499 SUPERFAMILY SSF53720 3 483 8.12E-147 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS13755 c55cf96f2e61e742078bae22ca3ea3c5 499 PANTHER PTHR11699:SF189 1 499 3.5E-274 T 23-04-2016 RD1_RS13755 c55cf96f2e61e742078bae22ca3ea3c5 499 Gene3D G3DSA:3.40.605.10 3 260 1.4E-89 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RD1_RS13755 c55cf96f2e61e742078bae22ca3ea3c5 499 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 5 483 1.5E-195 T 23-04-2016 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373 RD1_RS13755 c55cf96f2e61e742078bae22ca3ea3c5 499 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 23-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RD1_RS13755 c55cf96f2e61e742078bae22ca3ea3c5 499 Gene3D G3DSA:3.40.309.10 261 444 3.5E-64 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RD1_RS15075 16a17a5055aa233f284b4714d8fa5fa1 431 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 344 355 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RD1_RS15075 16a17a5055aa233f284b4714d8fa5fa1 431 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 8 417 1.2E-199 T 23-04-2016 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 RD1_RS15075 16a17a5055aa233f284b4714d8fa5fa1 431 SUPERFAMILY SSF140490 327 421 3.92E-38 T 23-04-2016 RD1_RS15075 16a17a5055aa233f284b4714d8fa5fa1 431 PANTHER PTHR11780 2 418 3.0E-271 T 23-04-2016 RD1_RS15075 16a17a5055aa233f284b4714d8fa5fa1 431 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 333 415 7.7E-31 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RD1_RS15075 16a17a5055aa233f284b4714d8fa5fa1 431 SUPERFAMILY SSF142019 3 240 5.62E-88 T 23-04-2016 RD1_RS15075 16a17a5055aa233f284b4714d8fa5fa1 431 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 47 219 3.8E-52 T 23-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain RD1_RS15075 16a17a5055aa233f284b4714d8fa5fa1 431 SUPERFAMILY SSF142984 241 325 2.09E-22 T 23-04-2016 RD1_RS15075 16a17a5055aa233f284b4714d8fa5fa1 431 Pfam PF10531 SLBB domain 243 292 3.6E-7 T 23-04-2016 IPR019554 Soluble ligand binding domain RD1_RS15075 16a17a5055aa233f284b4714d8fa5fa1 431 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 167 182 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RD1_RS15075 16a17a5055aa233f284b4714d8fa5fa1 431 SMART SM00928 331 376 3.6E-26 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RD1_RS00820 650b862b4b61e58fcecae37d82f7781d 546 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 343 536 2.0E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00820 650b862b4b61e58fcecae37d82f7781d 546 PANTHER PTHR30193 305 545 2.1E-115 T 23-04-2016 RD1_RS00820 650b862b4b61e58fcecae37d82f7781d 546 PANTHER PTHR30193 7 75 2.1E-115 T 23-04-2016 RD1_RS00820 650b862b4b61e58fcecae37d82f7781d 546 PANTHER PTHR30193:SF8 305 545 2.1E-115 T 23-04-2016 RD1_RS00820 650b862b4b61e58fcecae37d82f7781d 546 PANTHER PTHR30193:SF8 7 75 2.1E-115 T 23-04-2016 RD1_RS00820 650b862b4b61e58fcecae37d82f7781d 546 Gene3D G3DSA:1.10.3720.10 314 534 4.5E-53 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00820 650b862b4b61e58fcecae37d82f7781d 546 Gene3D G3DSA:1.10.3720.10 26 72 4.5E-53 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00820 650b862b4b61e58fcecae37d82f7781d 546 Gene3D G3DSA:1.10.3720.10 151 152 4.5E-53 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00820 650b862b4b61e58fcecae37d82f7781d 546 SUPERFAMILY SSF161098 320 533 5.1E-47 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS07480 b616e6571d11bf32e26abff9100b3780 285 PANTHER PTHR32308:SF0 4 280 1.1E-76 T 23-04-2016 RD1_RS07480 b616e6571d11bf32e26abff9100b3780 285 SUPERFAMILY SSF51621 5 226 5.02E-68 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS07480 b616e6571d11bf32e26abff9100b3780 285 PIRSF PIRSF015582 2 285 1.2E-72 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like RD1_RS07480 b616e6571d11bf32e26abff9100b3780 285 PANTHER PTHR32308 4 280 1.1E-76 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like RD1_RS07480 b616e6571d11bf32e26abff9100b3780 285 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 9 216 4.5E-45 T 23-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 RD1_RS07480 b616e6571d11bf32e26abff9100b3780 285 Gene3D G3DSA:3.20.20.60 4 227 2.5E-76 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS04460 fe476c05918edd5350fe13b74dc6798d 180 Gene3D G3DSA:3.40.50.360 2 174 1.0E-41 T 23-04-2016 IPR029039 Flavoprotein-like domain RD1_RS04460 fe476c05918edd5350fe13b74dc6798d 180 PANTHER PTHR30543:SF6 1 180 6.6E-42 T 23-04-2016 RD1_RS04460 fe476c05918edd5350fe13b74dc6798d 180 PANTHER PTHR30543 1 180 6.6E-42 T 23-04-2016 RD1_RS04460 fe476c05918edd5350fe13b74dc6798d 180 Pfam PF03358 NADPH-dependent FMN reductase 6 131 7.5E-31 T 23-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RD1_RS04460 fe476c05918edd5350fe13b74dc6798d 180 SUPERFAMILY SSF52218 6 174 4.36E-38 T 23-04-2016 IPR029039 Flavoprotein-like domain RD1_RS04075 c707fdbbe9975e0f234738b55ab159ad 370 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 121 6.7E-24 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RD1_RS04075 c707fdbbe9975e0f234738b55ab159ad 370 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 RD1_RS04075 c707fdbbe9975e0f234738b55ab159ad 370 Pfam PF00107 Zinc-binding dehydrogenase 198 317 5.6E-17 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RD1_RS04075 c707fdbbe9975e0f234738b55ab159ad 370 SUPERFAMILY SSF51735 161 335 7.21E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS04075 c707fdbbe9975e0f234738b55ab159ad 370 Gene3D G3DSA:3.90.180.10 2 191 8.3E-60 T 23-04-2016 IPR011032 GroES-like RD1_RS04075 c707fdbbe9975e0f234738b55ab159ad 370 SUPERFAMILY SSF50129 1 187 1.1E-65 T 23-04-2016 IPR011032 GroES-like RD1_RS04075 c707fdbbe9975e0f234738b55ab159ad 370 PANTHER PTHR11695:SF560 129 370 1.2E-187 T 23-04-2016 RD1_RS04075 c707fdbbe9975e0f234738b55ab159ad 370 PANTHER PTHR11695:SF560 15 108 1.2E-187 T 23-04-2016 RD1_RS04075 c707fdbbe9975e0f234738b55ab159ad 370 Gene3D G3DSA:3.40.50.720 192 309 6.2E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS04075 c707fdbbe9975e0f234738b55ab159ad 370 SUPERFAMILY SSF50129 319 370 1.6E-12 T 23-04-2016 IPR011032 GroES-like RD1_RS04075 c707fdbbe9975e0f234738b55ab159ad 370 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3 370 6.0E-183 T 23-04-2016 IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00040+1.1.1.-|KEGG: 00051+1.1.1.-|KEGG: 00071+1.1.1.1|KEGG: 00140+1.1.1.-|KEGG: 00240+1.1.1.-|KEGG: 00253+1.1.1.-|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00362+1.1.1.-|KEGG: 00363+1.1.1.-|KEGG: 00365+1.1.1.-|KEGG: 00400+1.1.1.-|KEGG: 00520+1.1.1.-|KEGG: 00523+1.1.1.-|KEGG: 00591+1.1.1.-|KEGG: 00592+1.1.1.1|KEGG: 00620+1.1.1.28|KEGG: 00622+1.1.1.-|KEGG: 00625+1.1.1.1+1.1.1.-|KEGG: 00626+1.1.1.1|KEGG: 00633+1.1.1.-|KEGG: 00640+1.1.1.-|KEGG: 00650+1.1.1.-|KEGG: 00680+1.1.1.284+1.1.1.-|KEGG: 00720+1.1.1.-|KEGG: 00750+1.1.1.-|KEGG: 00830+1.1.1.1+1.1.1.-|KEGG: 00950+1.1.1.-|KEGG: 00966+1.1.1.-|KEGG: 00980+1.1.1.1|KEGG: 00981+1.1.1.-|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6454|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-6901|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 RD1_RS04075 c707fdbbe9975e0f234738b55ab159ad 370 PANTHER PTHR11695 129 370 1.2E-187 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS04075 c707fdbbe9975e0f234738b55ab159ad 370 PANTHER PTHR11695 15 108 1.2E-187 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS11160 a566578992a9621cf309eb309b3f1985 283 PANTHER PTHR30193:SF8 16 282 4.4E-63 T 23-04-2016 RD1_RS11160 a566578992a9621cf309eb309b3f1985 283 PANTHER PTHR30193 16 282 4.4E-63 T 23-04-2016 RD1_RS11160 a566578992a9621cf309eb309b3f1985 283 Gene3D G3DSA:1.10.3720.10 14 276 3.9E-40 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11160 a566578992a9621cf309eb309b3f1985 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 272 4.9E-12 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11160 a566578992a9621cf309eb309b3f1985 283 SUPERFAMILY SSF161098 10 276 6.82E-46 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS12025 18bfe1eb6458d76a74e3b6ea04ba821b 139 PANTHER PTHR12418 24 137 2.3E-29 T 23-04-2016 RD1_RS12025 18bfe1eb6458d76a74e3b6ea04ba821b 139 Gene3D G3DSA:3.10.129.10 9 138 2.8E-41 T 23-04-2016 IPR029069 HotDog domain RD1_RS12025 18bfe1eb6458d76a74e3b6ea04ba821b 139 PANTHER PTHR12418:SF30 24 137 2.3E-29 T 23-04-2016 RD1_RS12025 18bfe1eb6458d76a74e3b6ea04ba821b 139 Pfam PF03061 Thioesterase superfamily 49 124 4.1E-12 T 23-04-2016 IPR006683 Thioesterase domain RD1_RS12025 18bfe1eb6458d76a74e3b6ea04ba821b 139 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 25 134 2.8E-14 T 23-04-2016 IPR003736 Phenylacetic acid degradation-related domain RD1_RS12025 18bfe1eb6458d76a74e3b6ea04ba821b 139 SUPERFAMILY SSF54637 24 136 7.48E-28 T 23-04-2016 IPR029069 HotDog domain RD1_RS03075 f364554da56d4e4dae8cffe9b79cbe29 345 SUPERFAMILY SSF51735 3 161 2.82E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03075 f364554da56d4e4dae8cffe9b79cbe29 345 SUPERFAMILY SSF55347 134 277 3.27E-29 T 23-04-2016 RD1_RS03075 f364554da56d4e4dae8cffe9b79cbe29 345 Gene3D G3DSA:3.30.360.10 148 343 1.2E-36 T 23-04-2016 RD1_RS03075 f364554da56d4e4dae8cffe9b79cbe29 345 PANTHER PTHR22604 5 333 3.7E-62 T 23-04-2016 RD1_RS03075 f364554da56d4e4dae8cffe9b79cbe29 345 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 138 237 1.2E-9 T 23-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS03075 f364554da56d4e4dae8cffe9b79cbe29 345 Gene3D G3DSA:3.40.50.720 3 147 1.1E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03075 f364554da56d4e4dae8cffe9b79cbe29 345 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 121 9.5E-19 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RD1_RS03075 f364554da56d4e4dae8cffe9b79cbe29 345 PANTHER PTHR22604:SF120 5 333 3.7E-62 T 23-04-2016 RD1_RS00735 76a2ac2b837d82b91db26d4d75ae6362 134 Pfam PF07378 Flagellar protein FlbT 4 129 3.1E-39 T 23-04-2016 IPR009967 Flagellum biosynthesis repressor FlbT GO:0006402|GO:0048027|GO:1902209 RD1_RS09090 b967c2f4cb526c4830ed6e2f4450b3da 239 PANTHER PTHR34580 1 227 2.2E-33 T 23-04-2016 RD1_RS09090 b967c2f4cb526c4830ed6e2f4450b3da 239 PANTHER PTHR34580:SF3 1 227 2.2E-33 T 23-04-2016 RD1_RS09090 b967c2f4cb526c4830ed6e2f4450b3da 239 SUPERFAMILY SSF46785 1 61 5.52E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS09090 b967c2f4cb526c4830ed6e2f4450b3da 239 Gene3D G3DSA:1.10.10.10 1 63 5.1E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS09090 b967c2f4cb526c4830ed6e2f4450b3da 239 Pfam PF08279 HTH domain 6 59 7.1E-15 T 23-04-2016 IPR013196 Helix-turn-helix, type 11 RD1_RS09090 b967c2f4cb526c4830ed6e2f4450b3da 239 Pfam PF13280 WYL domain 135 219 3.9E-13 T 23-04-2016 IPR026881 WYL domain RD1_RS07010 4fffd4e3864133bd0c12981302c7ed28 281 SUPERFAMILY SSF46626 171 281 9.89E-34 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07010 4fffd4e3864133bd0c12981302c7ed28 281 SUPERFAMILY SSF46626 23 170 2.73E-40 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07010 4fffd4e3864133bd0c12981302c7ed28 281 TIGRFAM TIGR04484 thiosulf_SoxA: sulfur oxidation c-type cytochrome SoxA 74 281 1.2E-73 T 23-04-2016 IPR025710 SoxAX cytochrome complex subunit A GO:0009055|GO:0016491|GO:0019417|GO:0020037|GO:0070069 RD1_RS07010 4fffd4e3864133bd0c12981302c7ed28 281 Gene3D G3DSA:1.10.760.10 25 103 7.2E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07010 4fffd4e3864133bd0c12981302c7ed28 281 Gene3D G3DSA:1.10.760.10 106 280 1.4E-58 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07010 4fffd4e3864133bd0c12981302c7ed28 281 PIRSF PIRSF038455 1 281 1.7E-77 T 23-04-2016 IPR025710 SoxAX cytochrome complex subunit A GO:0009055|GO:0016491|GO:0019417|GO:0020037|GO:0070069 RD1_RS06595 4b0db99a9ee975f45c823c202aa91a1a 177 PIRSF PIRSF002162 1 177 2.6E-43 T 23-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS06595 4b0db99a9ee975f45c823c202aa91a1a 177 PANTHER PTHR11655:SF14 1 176 4.7E-83 T 23-04-2016 RD1_RS06595 4b0db99a9ee975f45c823c202aa91a1a 177 PANTHER PTHR11655 1 176 4.7E-83 T 23-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS06595 4b0db99a9ee975f45c823c202aa91a1a 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 3.9E-32 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS06595 4b0db99a9ee975f45c823c202aa91a1a 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 3.9E-32 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS06595 4b0db99a9ee975f45c823c202aa91a1a 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 3.9E-32 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS06595 4b0db99a9ee975f45c823c202aa91a1a 177 SUPERFAMILY SSF56053 83 177 4.58E-37 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS06595 4b0db99a9ee975f45c823c202aa91a1a 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.819 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS06595 4b0db99a9ee975f45c823c202aa91a1a 177 SUPERFAMILY SSF56053 2 82 3.66E-23 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS06595 4b0db99a9ee975f45c823c202aa91a1a 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 2.2E-73 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS06595 4b0db99a9ee975f45c823c202aa91a1a 177 Gene3D G3DSA:3.90.930.12 2 82 3.9E-28 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS06595 4b0db99a9ee975f45c823c202aa91a1a 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 23-04-2016 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06595 4b0db99a9ee975f45c823c202aa91a1a 177 Gene3D G3DSA:3.90.930.12 83 177 2.0E-40 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS06595 4b0db99a9ee975f45c823c202aa91a1a 177 Pfam PF00347 Ribosomal protein L6 12 82 7.6E-16 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS06595 4b0db99a9ee975f45c823c202aa91a1a 177 Pfam PF00347 Ribosomal protein L6 91 164 4.7E-19 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RD1_RS13895 ad0ba256c0ca3810e5327f5531102ff9 137 PRINTS PR01996 Phage major tail protein 1 family signature 21 50 6.2E-51 T 23-04-2016 IPR022344 Gene transfer agent, major tail protein RD1_RS13895 ad0ba256c0ca3810e5327f5531102ff9 137 PRINTS PR01996 Phage major tail protein 1 family signature 1 13 6.2E-51 T 23-04-2016 IPR022344 Gene transfer agent, major tail protein RD1_RS13895 ad0ba256c0ca3810e5327f5531102ff9 137 PRINTS PR01996 Phage major tail protein 1 family signature 110 134 6.2E-51 T 23-04-2016 IPR022344 Gene transfer agent, major tail protein RD1_RS13895 ad0ba256c0ca3810e5327f5531102ff9 137 PRINTS PR01996 Phage major tail protein 1 family signature 83 106 6.2E-51 T 23-04-2016 IPR022344 Gene transfer agent, major tail protein RD1_RS13895 ad0ba256c0ca3810e5327f5531102ff9 137 Pfam PF06199 Phage tail tube protein 3 134 1.7E-45 T 23-04-2016 IPR011855 Phage major tail protein TP901-1 RD1_RS13895 ad0ba256c0ca3810e5327f5531102ff9 137 TIGRFAM TIGR02126 phgtail_TP901_1: phage major tail protein, TP901-1 family 1 130 1.4E-29 T 23-04-2016 IPR011855 Phage major tail protein TP901-1 RD1_RS08495 e2f0c1112d63e510c6e2db7b5810e54d 512 PANTHER PTHR30177:SF2 243 508 3.7E-81 T 23-04-2016 RD1_RS08495 e2f0c1112d63e510c6e2db7b5810e54d 512 PANTHER PTHR30177 243 508 3.7E-81 T 23-04-2016 RD1_RS08495 e2f0c1112d63e510c6e2db7b5810e54d 512 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 346 503 4.5E-22 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08495 e2f0c1112d63e510c6e2db7b5810e54d 512 Pfam PF10947 Protein of unknown function (DUF2628) 31 88 1.7E-5 T 23-04-2016 IPR024399 Protein of unknown function DUF2628 RD1_RS08495 e2f0c1112d63e510c6e2db7b5810e54d 512 Gene3D G3DSA:1.10.3720.10 304 508 1.5E-32 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08495 e2f0c1112d63e510c6e2db7b5810e54d 512 SUPERFAMILY SSF161098 324 507 3.66E-35 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS01565 b5980a4aafaeeaca250039555e2e49c4 505 SUPERFAMILY SSF64158 79 295 1.24E-71 T 23-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RD1_RS01565 b5980a4aafaeeaca250039555e2e49c4 505 Gene3D G3DSA:3.40.1450.10 80 304 7.0E-80 T 23-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RD1_RS01565 b5980a4aafaeeaca250039555e2e49c4 505 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 5 504 2.8E-190 T 23-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RD1_RS01565 b5980a4aafaeeaca250039555e2e49c4 505 SUPERFAMILY SSF53649 305 504 8.11E-76 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RD1_RS01565 b5980a4aafaeeaca250039555e2e49c4 505 SUPERFAMILY SSF53649 4 78 8.11E-76 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RD1_RS01565 b5980a4aafaeeaca250039555e2e49c4 505 PANTHER PTHR31637:SF0 1 504 2.3E-230 T 23-04-2016 RD1_RS01565 b5980a4aafaeeaca250039555e2e49c4 505 PIRSF PIRSF001492 1 505 5.5E-195 T 23-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RD1_RS01565 b5980a4aafaeeaca250039555e2e49c4 505 Pfam PF01676 Metalloenzyme superfamily 5 493 1.7E-74 T 23-04-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 RD1_RS01565 b5980a4aafaeeaca250039555e2e49c4 505 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 83 291 1.0E-68 T 23-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RD1_RS01565 b5980a4aafaeeaca250039555e2e49c4 505 Gene3D G3DSA:3.40.720.10 309 504 1.9E-86 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RD1_RS01565 b5980a4aafaeeaca250039555e2e49c4 505 Gene3D G3DSA:3.40.720.10 5 79 1.9E-86 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RD1_RS01565 b5980a4aafaeeaca250039555e2e49c4 505 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 5 505 45.655 T 23-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RD1_RS01565 b5980a4aafaeeaca250039555e2e49c4 505 PANTHER PTHR31637 1 504 2.3E-230 T 23-04-2016 RD1_RS13505 ea42bc942b11093fcfaeb1ece6d75945 468 Gene3D G3DSA:1.10.2020.10 49 148 7.5E-32 T 23-04-2016 IPR023177 Uronate isomerase, domain 2 GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248|UniPathway: UPA00246 RD1_RS13505 ea42bc942b11093fcfaeb1ece6d75945 468 SUPERFAMILY SSF51556 2 467 8.84E-159 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS13505 ea42bc942b11093fcfaeb1ece6d75945 468 Pfam PF02614 Glucuronate isomerase 18 464 3.6E-77 T 23-04-2016 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248|UniPathway: UPA00246 RD1_RS13505 ea42bc942b11093fcfaeb1ece6d75945 468 PANTHER PTHR30068 7 468 2.0E-153 T 23-04-2016 RD1_RS13505 ea42bc942b11093fcfaeb1ece6d75945 468 Hamap MF_00675 Uronate isomerase [uxaC]. 1 468 38.761 T 23-04-2016 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248|UniPathway: UPA00246 RD1_RS13505 ea42bc942b11093fcfaeb1ece6d75945 468 PANTHER PTHR30068:SF4 7 468 2.0E-153 T 23-04-2016 RD1_RS13505 ea42bc942b11093fcfaeb1ece6d75945 468 Gene3D G3DSA:3.20.20.140 149 468 4.9E-145 T 23-04-2016 RD1_RS13505 ea42bc942b11093fcfaeb1ece6d75945 468 Gene3D G3DSA:3.20.20.140 6 47 4.9E-145 T 23-04-2016 RD1_RS08655 b9e6f590327ddaeafa9541777b8d5e00 237 Pfam PF06707 Protein of unknown function (DUF1194) 22 223 1.0E-69 T 23-04-2016 IPR010607 Protein of unknown function DUF1194 RD1_RS08655 b9e6f590327ddaeafa9541777b8d5e00 237 SUPERFAMILY SSF53300 22 221 1.51E-18 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS15760 ec1e4ae0bd1f80733bc857941b8f40d1 128 ProDom PD080544 SYNTHASE 4.2.1.- LYASE L-ECTOINE DEHYDRATASE N-ACETYLDIAMINOBUTYRATE ECTOINE ENZYME SYNTHASE:ECTOINE ECTC 3 122 1.0E-27 T 23-04-2016 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108|KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00067 RD1_RS15760 ec1e4ae0bd1f80733bc857941b8f40d1 128 Pfam PF06339 Ectoine synthase 1 127 2.6E-46 T 23-04-2016 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108|KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00067 RD1_RS15760 ec1e4ae0bd1f80733bc857941b8f40d1 128 Gene3D G3DSA:2.60.120.10 1 112 6.4E-15 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS15760 ec1e4ae0bd1f80733bc857941b8f40d1 128 PANTHER PTHR39289:SF1 1 125 4.6E-26 T 23-04-2016 RD1_RS15760 ec1e4ae0bd1f80733bc857941b8f40d1 128 SUPERFAMILY SSF51182 1 115 1.06E-17 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS15760 ec1e4ae0bd1f80733bc857941b8f40d1 128 PANTHER PTHR39289 1 125 4.6E-26 T 23-04-2016 RD1_RS09435 2b3c43623f2762bde067d5072281a819 158 PANTHER PTHR23091:SF187 1 158 1.2E-33 T 23-04-2016 RD1_RS09435 2b3c43623f2762bde067d5072281a819 158 SUPERFAMILY SSF55729 1 158 1.48E-32 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS09435 2b3c43623f2762bde067d5072281a819 158 Gene3D G3DSA:3.40.630.30 1 158 2.8E-38 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS09435 2b3c43623f2762bde067d5072281a819 158 Pfam PF00583 Acetyltransferase (GNAT) family 52 132 1.9E-13 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS09435 2b3c43623f2762bde067d5072281a819 158 PANTHER PTHR23091 1 158 1.2E-33 T 23-04-2016 RD1_RS06400 e6a1043cfb1c4de4629081c10fbb50a5 291 Gene3D G3DSA:1.10.1040.10 188 283 1.2E-35 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS06400 e6a1043cfb1c4de4629081c10fbb50a5 291 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 186 282 1.8E-34 T 23-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RD1_RS06400 e6a1043cfb1c4de4629081c10fbb50a5 291 SUPERFAMILY SSF51735 2 185 1.97E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS06400 e6a1043cfb1c4de4629081c10fbb50a5 291 PIRSF PIRSF000105 1 290 8.1E-81 T 23-04-2016 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 RD1_RS06400 e6a1043cfb1c4de4629081c10fbb50a5 291 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 6 183 6.0E-58 T 23-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RD1_RS06400 e6a1043cfb1c4de4629081c10fbb50a5 291 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 183 208 - T 23-04-2016 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RD1_RS06400 e6a1043cfb1c4de4629081c10fbb50a5 291 PANTHER PTHR23309 2 286 1.8E-134 T 23-04-2016 RD1_RS06400 e6a1043cfb1c4de4629081c10fbb50a5 291 SUPERFAMILY SSF48179 185 287 4.25E-34 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS06400 e6a1043cfb1c4de4629081c10fbb50a5 291 Gene3D G3DSA:3.40.50.720 2 187 2.4E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS01180 5284c8fc8b044b9264ea8b46d4d4e0ac 129 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 6 128 1.7E-30 T 23-04-2016 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 RD1_RS01180 5284c8fc8b044b9264ea8b46d4d4e0ac 129 PANTHER PTHR30435:SF2 1 128 8.1E-36 T 23-04-2016 RD1_RS01180 5284c8fc8b044b9264ea8b46d4d4e0ac 129 PANTHER PTHR30435 1 128 8.1E-36 T 23-04-2016 RD1_RS01180 5284c8fc8b044b9264ea8b46d4d4e0ac 129 Pfam PF00460 Flagella basal body rod protein 8 38 4.0E-7 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RD1_RS01180 5284c8fc8b044b9264ea8b46d4d4e0ac 129 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 81 125 4.0E-9 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RD1_RS01180 5284c8fc8b044b9264ea8b46d4d4e0ac 129 PIRSF PIRSF002889 1 128 1.5E-15 T 23-04-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 RD1_RS13380 8f6edcbcb80bcd878144d844c298c6d2 355 SUPERFAMILY SSF52540 109 350 5.34E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13380 8f6edcbcb80bcd878144d844c298c6d2 355 Pfam PF01883 Domain of unknown function DUF59 5 71 5.7E-13 T 23-04-2016 IPR002744 Domain of unknown function DUF59 RD1_RS13380 8f6edcbcb80bcd878144d844c298c6d2 355 PANTHER PTHR23264 1 351 2.5E-142 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RD1_RS13380 8f6edcbcb80bcd878144d844c298c6d2 355 Hamap MF_02040 Iron-sulfur cluster carrier protein. 102 350 35.856 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RD1_RS13380 8f6edcbcb80bcd878144d844c298c6d2 355 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 107 349 2.4E-98 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RD1_RS13380 8f6edcbcb80bcd878144d844c298c6d2 355 SUPERFAMILY SSF117916 1 84 6.21E-15 T 23-04-2016 RD1_RS13380 8f6edcbcb80bcd878144d844c298c6d2 355 Gene3D G3DSA:3.40.50.300 102 348 6.4E-101 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13380 8f6edcbcb80bcd878144d844c298c6d2 355 ProSitePatterns PS01215 Mrp family signature. 213 229 - T 23-04-2016 IPR000808 Mrp, conserved site GO:0005524 RD1_RS19230 e2ac848cf5feb3e061a67b47df0ad51a 297 SUPERFAMILY SSF52540 7 225 1.48E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS19230 e2ac848cf5feb3e061a67b47df0ad51a 297 Gene3D G3DSA:3.40.50.300 4 225 1.9E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS19230 e2ac848cf5feb3e061a67b47df0ad51a 297 PANTHER PTHR24220 11 231 8.5E-65 T 23-04-2016 RD1_RS19230 e2ac848cf5feb3e061a67b47df0ad51a 297 SMART SM00382 34 219 3.7E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS19230 e2ac848cf5feb3e061a67b47df0ad51a 297 Pfam PF00005 ABC transporter 26 161 6.7E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS19230 e2ac848cf5feb3e061a67b47df0ad51a 297 PANTHER PTHR24220:SF414 11 231 8.5E-65 T 23-04-2016 RD1_RS19230 e2ac848cf5feb3e061a67b47df0ad51a 297 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS13125 025b73c404417b4ca8f0b0a006c47f8e 210 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 210 78.908 T 23-04-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 RD1_RS13125 025b73c404417b4ca8f0b0a006c47f8e 210 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 6 173 1.1E-63 T 23-04-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 RD1_RS13125 025b73c404417b4ca8f0b0a006c47f8e 210 SUPERFAMILY SSF55729 2 191 1.59E-73 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS13125 025b73c404417b4ca8f0b0a006c47f8e 210 PANTHER PTHR30098 3 191 5.4E-67 T 23-04-2016 RD1_RS13125 025b73c404417b4ca8f0b0a006c47f8e 210 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 9 187 1.4E-57 T 23-04-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 RD1_RS03430 a7dd341eef532053bbb95a2a12ee9cbf 256 Hamap MF_00443 Thiazole synthase [thiG]. 1 255 39.322 T 23-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 RD1_RS03430 a7dd341eef532053bbb95a2a12ee9cbf 256 Gene3D G3DSA:3.20.20.70 6 252 4.5E-49 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS03430 a7dd341eef532053bbb95a2a12ee9cbf 256 Pfam PF05690 Thiazole biosynthesis protein ThiG 5 249 3.2E-103 T 23-04-2016 RD1_RS03430 a7dd341eef532053bbb95a2a12ee9cbf 256 SUPERFAMILY SSF110399 3 240 6.8E-78 T 23-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 RD1_RS03430 a7dd341eef532053bbb95a2a12ee9cbf 256 PANTHER PTHR34266 1 252 2.8E-121 T 23-04-2016 RD1_RS17465 18867acba87bce6448854ae7b62fe7b3 367 PANTHER PTHR10578 9 360 4.5E-83 T 23-04-2016 RD1_RS17465 18867acba87bce6448854ae7b62fe7b3 367 PIRSF PIRSF000138 2 364 6.1E-105 T 23-04-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 RD1_RS17465 18867acba87bce6448854ae7b62fe7b3 367 PANTHER PTHR10578:SF65 9 360 4.5E-83 T 23-04-2016 RD1_RS17465 18867acba87bce6448854ae7b62fe7b3 367 Gene3D G3DSA:3.20.20.70 5 360 4.0E-102 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS17465 18867acba87bce6448854ae7b62fe7b3 367 Pfam PF01070 FMN-dependent dehydrogenase 15 360 2.7E-106 T 23-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 RD1_RS17465 18867acba87bce6448854ae7b62fe7b3 367 SUPERFAMILY SSF51395 5 360 1.83E-81 T 23-04-2016 RD1_RS04305 6976afef48c11095ce1ab36fc736000c 448 ProSitePatterns PS01219 Ammonium transporters signature. 201 226 - T 23-04-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 RD1_RS04305 6976afef48c11095ce1ab36fc736000c 448 PANTHER PTHR11730:SF6 13 112 3.2E-141 T 23-04-2016 RD1_RS04305 6976afef48c11095ce1ab36fc736000c 448 PANTHER PTHR11730:SF6 131 448 3.2E-141 T 23-04-2016 RD1_RS04305 6976afef48c11095ce1ab36fc736000c 448 Pfam PF00909 Ammonium Transporter Family 43 442 5.4E-105 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RD1_RS04305 6976afef48c11095ce1ab36fc736000c 448 SUPERFAMILY SSF111352 38 423 8.63E-103 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RD1_RS04305 6976afef48c11095ce1ab36fc736000c 448 PANTHER PTHR11730 13 112 3.2E-141 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RD1_RS04305 6976afef48c11095ce1ab36fc736000c 448 PANTHER PTHR11730 131 448 3.2E-141 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RD1_RS04305 6976afef48c11095ce1ab36fc736000c 448 TIGRFAM TIGR00836 amt: ammonium transporter 43 442 6.9E-106 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RD1_RS04305 6976afef48c11095ce1ab36fc736000c 448 TIGRFAM TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype 36 445 7.8E-194 T 23-04-2016 IPR019879 Ammonium transporter, marine subtype RD1_RS04305 6976afef48c11095ce1ab36fc736000c 448 Gene3D G3DSA:1.10.3430.10 38 423 1.2E-108 T 23-04-2016 IPR029020 Ammonium/urea transporter RD1_RS15655 73765065ef1fad378267c98c2c8bc583 295 PIRSF PIRSF015626 14 278 2.0E-80 T 23-04-2016 IPR003786 Protein FdhD GO:0016783 RD1_RS15655 73765065ef1fad378267c98c2c8bc583 295 Gene3D G3DSA:3.10.20.10 44 125 2.9E-17 T 23-04-2016 RD1_RS15655 73765065ef1fad378267c98c2c8bc583 295 PANTHER PTHR30592:SF2 9 285 6.4E-133 T 23-04-2016 RD1_RS15655 73765065ef1fad378267c98c2c8bc583 295 PANTHER PTHR30592 9 285 6.4E-133 T 23-04-2016 RD1_RS15655 73765065ef1fad378267c98c2c8bc583 295 Pfam PF02634 FdhD/NarQ family 42 273 5.2E-71 T 23-04-2016 IPR003786 Protein FdhD GO:0016783 RD1_RS15655 73765065ef1fad378267c98c2c8bc583 295 Gene3D G3DSA:3.40.140.10 140 277 2.7E-49 T 23-04-2016 RD1_RS15655 73765065ef1fad378267c98c2c8bc583 295 SUPERFAMILY SSF53927 24 274 9.63E-73 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RD1_RS17515 d47b195b5f486bdc6ad4133c6b3314c4 241 PANTHER PTHR21091:SF127 63 215 1.6E-35 T 23-04-2016 RD1_RS17515 d47b195b5f486bdc6ad4133c6b3314c4 241 PANTHER PTHR21091:SF127 1 42 1.6E-35 T 23-04-2016 RD1_RS17515 d47b195b5f486bdc6ad4133c6b3314c4 241 PIRSF PIRSF036427 1 240 2.4E-63 T 23-04-2016 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 RD1_RS17515 d47b195b5f486bdc6ad4133c6b3314c4 241 PANTHER PTHR21091 63 215 1.6E-35 T 23-04-2016 RD1_RS17515 d47b195b5f486bdc6ad4133c6b3314c4 241 PANTHER PTHR21091 1 42 1.6E-35 T 23-04-2016 RD1_RS17515 d47b195b5f486bdc6ad4133c6b3314c4 241 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 3 235 3.7E-66 T 23-04-2016 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 RD1_RS17515 d47b195b5f486bdc6ad4133c6b3314c4 241 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 216 8.4E-41 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS17515 d47b195b5f486bdc6ad4133c6b3314c4 241 SUPERFAMILY SSF53790 1 237 4.19E-45 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RD1_RS17515 d47b195b5f486bdc6ad4133c6b3314c4 241 Gene3D G3DSA:3.40.1010.10 1 134 1.3E-27 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RD1_RS07155 bbb20038ae094fbedd282ba14bc6e17b 300 SUPERFAMILY SSF52540 5 222 1.04E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07155 bbb20038ae094fbedd282ba14bc6e17b 300 PANTHER PTHR24220 8 223 2.7E-86 T 23-04-2016 RD1_RS07155 bbb20038ae094fbedd282ba14bc6e17b 300 PANTHER PTHR24220 248 291 2.7E-86 T 23-04-2016 RD1_RS07155 bbb20038ae094fbedd282ba14bc6e17b 300 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS07155 bbb20038ae094fbedd282ba14bc6e17b 300 Gene3D G3DSA:3.40.50.300 4 232 3.2E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07155 bbb20038ae094fbedd282ba14bc6e17b 300 PANTHER PTHR24220:SF595 8 223 2.7E-86 T 23-04-2016 RD1_RS07155 bbb20038ae094fbedd282ba14bc6e17b 300 PANTHER PTHR24220:SF595 248 291 2.7E-86 T 23-04-2016 RD1_RS07155 bbb20038ae094fbedd282ba14bc6e17b 300 SMART SM00382 31 207 2.5E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS07155 bbb20038ae094fbedd282ba14bc6e17b 300 Pfam PF00005 ABC transporter 24 160 1.4E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS00120 2cf24727b52090cbc3629408e27bdc49 148 Pfam PF13581 Histidine kinase-like ATPase domain 20 142 9.9E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS00120 2cf24727b52090cbc3629408e27bdc49 148 Gene3D G3DSA:3.30.565.10 21 96 7.7E-8 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS00120 2cf24727b52090cbc3629408e27bdc49 148 SUPERFAMILY SSF55874 28 130 6.6E-9 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS16300 c206c824a24594d0cc9166ff47f4692c 118 ProSitePatterns PS00968 Antenna complexes alpha subunits signature. 25 41 - T 23-04-2016 IPR002361 Antenna complex, alpha subunit conserved site GO:0016021|GO:0019684|GO:0019866|GO:0030077|GO:0045156 RD1_RS16300 c206c824a24594d0cc9166ff47f4692c 118 SUPERFAMILY SSF56918 1 48 4.71E-19 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RD1_RS16300 c206c824a24594d0cc9166ff47f4692c 118 Gene3D G3DSA:4.10.220.20 1 49 6.9E-26 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RD1_RS16300 c206c824a24594d0cc9166ff47f4692c 118 Pfam PF00556 Antenna complex alpha/beta subunit 3 41 6.0E-12 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RD1_RS16300 c206c824a24594d0cc9166ff47f4692c 118 PRINTS PR00673 Light harvesting protein A chain signature 5 12 6.01E-6 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RD1_RS16300 c206c824a24594d0cc9166ff47f4692c 118 PRINTS PR00673 Light harvesting protein A chain signature 12 31 6.01E-6 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RD1_RS16300 c206c824a24594d0cc9166ff47f4692c 118 PRINTS PR00673 Light harvesting protein A chain signature 31 42 6.01E-6 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RD1_RS18785 bf039aa57338cf4e43e8e47ddb2c329e 265 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 81 5.4E-19 T 23-04-2016 IPR013589 Bacterial transglutaminase-like, N-terminal RD1_RS18785 bf039aa57338cf4e43e8e47ddb2c329e 265 PANTHER PTHR33490 1 265 5.9E-60 T 23-04-2016 RD1_RS18785 bf039aa57338cf4e43e8e47ddb2c329e 265 Gene3D G3DSA:3.90.260.10 163 232 6.4E-10 T 23-04-2016 IPR002931 Transglutaminase-like RD1_RS18785 bf039aa57338cf4e43e8e47ddb2c329e 265 SMART SM00460 158 222 4.3E-15 T 23-04-2016 IPR002931 Transglutaminase-like RD1_RS18785 bf039aa57338cf4e43e8e47ddb2c329e 265 PANTHER PTHR33490:SF5 1 265 5.9E-60 T 23-04-2016 RD1_RS18785 bf039aa57338cf4e43e8e47ddb2c329e 265 SUPERFAMILY SSF54001 7 247 9.82E-40 T 23-04-2016 RD1_RS18785 bf039aa57338cf4e43e8e47ddb2c329e 265 Pfam PF01841 Transglutaminase-like superfamily 117 219 1.7E-24 T 23-04-2016 IPR002931 Transglutaminase-like RD1_RS09645 350fdc67c7a4f36ef909e5346ee1266d 452 PANTHER PTHR11206:SF132 3 422 3.7E-59 T 23-04-2016 RD1_RS09645 350fdc67c7a4f36ef909e5346ee1266d 452 Pfam PF01554 MatE 17 168 5.9E-22 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS09645 350fdc67c7a4f36ef909e5346ee1266d 452 Pfam PF01554 MatE 230 378 1.0E-13 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS09645 350fdc67c7a4f36ef909e5346ee1266d 452 PIRSF PIRSF006603 8 425 6.7E-51 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS09645 350fdc67c7a4f36ef909e5346ee1266d 452 PANTHER PTHR11206 3 422 3.7E-59 T 23-04-2016 RD1_RS09010 105b5f54aae8215b9ea1a9c34570bff7 207 PANTHER PTHR21666:SF178 78 199 3.6E-21 T 23-04-2016 RD1_RS09010 105b5f54aae8215b9ea1a9c34570bff7 207 PANTHER PTHR21666 78 199 3.6E-21 T 23-04-2016 RD1_RS09010 105b5f54aae8215b9ea1a9c34570bff7 207 Pfam PF07486 Cell Wall Hydrolase 89 198 1.7E-25 T 23-04-2016 IPR011105 Cell wall hydrolase, SleB GO:0016787 RD1_RS16560 0803043646cc77bc3e42a8c7adb0d010 251 Pfam PF00005 ABC transporter 28 181 1.2E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS16560 0803043646cc77bc3e42a8c7adb0d010 251 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 11 251 1.4E-113 T 23-04-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD RD1_RS16560 0803043646cc77bc3e42a8c7adb0d010 251 PANTHER PTHR24220:SF366 13 250 1.8E-126 T 23-04-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD RD1_RS16560 0803043646cc77bc3e42a8c7adb0d010 251 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 229 250 2.4E-7 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD1_RS16560 0803043646cc77bc3e42a8c7adb0d010 251 SMART SM00382 36 228 0.002 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS16560 0803043646cc77bc3e42a8c7adb0d010 251 Gene3D G3DSA:3.40.50.300 11 248 6.2E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16560 0803043646cc77bc3e42a8c7adb0d010 251 SUPERFAMILY SSF52540 11 249 3.24E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16560 0803043646cc77bc3e42a8c7adb0d010 251 PANTHER PTHR24220 13 250 1.8E-126 T 23-04-2016 RD1_RS05570 ba048d0079189bcece9161bb11b0f7e8 294 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 35 270 8.8E-31 T 23-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 RD1_RS05570 ba048d0079189bcece9161bb11b0f7e8 294 PIRSF PIRSF038471 9 269 4.4E-44 T 23-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 RD1_RS05570 ba048d0079189bcece9161bb11b0f7e8 294 PANTHER PTHR34138 7 269 3.9E-37 T 23-04-2016 RD1_RS05570 ba048d0079189bcece9161bb11b0f7e8 294 PANTHER PTHR34138:SF1 7 269 3.9E-37 T 23-04-2016 RD1_RS05570 ba048d0079189bcece9161bb11b0f7e8 294 Pfam PF04085 rod shape-determining protein MreC 129 268 1.4E-26 T 23-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 RD1_RS20410 d98bf14a9c7288037bee0b0814849f6e 211 SUPERFAMILY SSF53474 31 127 9.36E-9 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS20410 d98bf14a9c7288037bee0b0814849f6e 211 Gene3D G3DSA:3.40.50.1820 27 129 2.9E-10 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS20410 d98bf14a9c7288037bee0b0814849f6e 211 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 8 174 1.1E-38 T 23-04-2016 IPR010297 Protein of unknown function DUF900, hydrolase-like RD1_RS16745 28547e73b4ae53389e1d17a9891c98a8 481 PANTHER PTHR30061:SF26 2 475 1.2E-53 T 23-04-2016 RD1_RS16745 28547e73b4ae53389e1d17a9891c98a8 481 SUPERFAMILY SSF53850 58 477 8.69E-60 T 23-04-2016 RD1_RS16745 28547e73b4ae53389e1d17a9891c98a8 481 Pfam PF01547 Bacterial extracellular solute-binding protein 73 382 1.3E-20 T 23-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 RD1_RS16745 28547e73b4ae53389e1d17a9891c98a8 481 Gene3D G3DSA:3.40.190.10 59 190 4.6E-26 T 23-04-2016 RD1_RS16745 28547e73b4ae53389e1d17a9891c98a8 481 Gene3D G3DSA:3.40.190.10 370 414 4.6E-26 T 23-04-2016 RD1_RS16745 28547e73b4ae53389e1d17a9891c98a8 481 Gene3D G3DSA:3.40.190.10 194 369 2.1E-20 T 23-04-2016 RD1_RS16745 28547e73b4ae53389e1d17a9891c98a8 481 PANTHER PTHR30061 2 475 1.2E-53 T 23-04-2016 RD1_RS06390 680a4ab813df568cd2033d26db129976 89 Pfam PF00381 PTS HPr component phosphorylation site 3 82 3.6E-20 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like RD1_RS06390 680a4ab813df568cd2033d26db129976 89 PANTHER PTHR33705:SF2 1 89 1.6E-31 T 23-04-2016 RD1_RS06390 680a4ab813df568cd2033d26db129976 89 SUPERFAMILY SSF55594 3 88 3.93E-24 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like RD1_RS06390 680a4ab813df568cd2033d26db129976 89 Gene3D G3DSA:3.30.1340.10 1 88 7.4E-26 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like RD1_RS06390 680a4ab813df568cd2033d26db129976 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.3E-11 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like RD1_RS06390 680a4ab813df568cd2033d26db129976 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.3E-11 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like RD1_RS06390 680a4ab813df568cd2033d26db129976 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.3E-11 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like RD1_RS06390 680a4ab813df568cd2033d26db129976 89 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 23-04-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RD1_RS06390 680a4ab813df568cd2033d26db129976 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 1.5E-23 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like RD1_RS06390 680a4ab813df568cd2033d26db129976 89 PANTHER PTHR33705 1 89 1.6E-31 T 23-04-2016 RD1_RS11960 a0190701e2322b5f28e865b259fe9723 386 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 6 381 2.7E-68 T 23-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RD1_RS11960 a0190701e2322b5f28e865b259fe9723 386 Pfam PF02684 Lipid-A-disaccharide synthetase 5 357 7.3E-87 T 23-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RD1_RS11960 a0190701e2322b5f28e865b259fe9723 386 PANTHER PTHR30372 3 384 4.2E-87 T 23-04-2016 RD1_RS11960 a0190701e2322b5f28e865b259fe9723 386 SUPERFAMILY SSF53756 2 363 2.64E-27 T 23-04-2016 RD1_RS15840 9d725dd01ee1a80ba27a192d915567b3 549 Gene3D G3DSA:3.40.50.300 15 231 3.7E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15840 9d725dd01ee1a80ba27a192d915567b3 549 Pfam PF00580 UvrD/REP helicase N-terminal domain 16 108 4.7E-10 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RD1_RS15840 9d725dd01ee1a80ba27a192d915567b3 549 Pfam PF00580 UvrD/REP helicase N-terminal domain 131 219 1.3E-14 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RD1_RS15840 9d725dd01ee1a80ba27a192d915567b3 549 Gene3D G3DSA:3.40.50.300 467 535 3.0E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15840 9d725dd01ee1a80ba27a192d915567b3 549 Gene3D G3DSA:3.40.50.300 232 341 3.0E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15840 9d725dd01ee1a80ba27a192d915567b3 549 Pfam PF13361 UvrD-like helicase C-terminal domain 226 361 3.5E-8 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RD1_RS15840 9d725dd01ee1a80ba27a192d915567b3 549 Pfam PF13361 UvrD-like helicase C-terminal domain 385 523 6.1E-14 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RD1_RS15840 9d725dd01ee1a80ba27a192d915567b3 549 SUPERFAMILY SSF52540 14 375 2.96E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15840 9d725dd01ee1a80ba27a192d915567b3 549 SUPERFAMILY SSF52540 408 530 2.96E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15840 9d725dd01ee1a80ba27a192d915567b3 549 PANTHER PTHR11070 21 520 2.7E-53 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RD1_RS04855 c96841847074aebf2563ae01cd212cdf 271 SUPERFAMILY SSF161098 75 262 2.09E-35 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04855 c96841847074aebf2563ae01cd212cdf 271 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 23 270 1.2E-81 T 23-04-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 RD1_RS04855 c96841847074aebf2563ae01cd212cdf 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 257 1.4E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04855 c96841847074aebf2563ae01cd212cdf 271 PANTHER PTHR30043 18 271 2.2E-64 T 23-04-2016 RD1_RS04855 c96841847074aebf2563ae01cd212cdf 271 Gene3D G3DSA:1.10.3720.10 71 267 3.7E-29 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04855 c96841847074aebf2563ae01cd212cdf 271 PANTHER PTHR30043:SF1 18 271 2.2E-64 T 23-04-2016 RD1_RS06290 7b13ce612cba20717d822f986ff608bc 249 SUPERFAMILY SSF63892 7 247 1.18E-93 T 23-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RD1_RS06290 7b13ce612cba20717d822f986ff608bc 249 PANTHER PTHR30456:SF0 6 249 3.4E-118 T 23-04-2016 RD1_RS06290 7b13ce612cba20717d822f986ff608bc 249 Gene3D G3DSA:3.20.20.70 6 248 1.4E-102 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS06290 7b13ce612cba20717d822f986ff608bc 249 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 249 121.777 T 23-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RD1_RS06290 7b13ce612cba20717d822f986ff608bc 249 PANTHER PTHR30456 6 249 3.4E-118 T 23-04-2016 RD1_RS06290 7b13ce612cba20717d822f986ff608bc 249 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 8 244 3.5E-97 T 23-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RD1_RS06290 7b13ce612cba20717d822f986ff608bc 249 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 8 244 2.4E-88 T 23-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RD1_RS12835 74ec9859f075742e8482a1b15cc841e2 454 Pfam PF11150 Protein of unknown function (DUF2927) 54 253 1.0E-52 T 23-04-2016 IPR021323 Protein of unknown function DUF2927 RD1_RS11640 9d394540b87efa18ac7caf0e26e3b90f 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 98 195 3.6E-9 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS11640 9d394540b87efa18ac7caf0e26e3b90f 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 201 5.2E-21 T 23-04-2016 IPR023214 HAD-like domain RD1_RS11640 9d394540b87efa18ac7caf0e26e3b90f 232 SUPERFAMILY SSF56784 3 230 4.27E-47 T 23-04-2016 IPR023214 HAD-like domain RD1_RS11640 9d394540b87efa18ac7caf0e26e3b90f 232 Gene3D G3DSA:3.40.50.1000 3 24 2.0E-32 T 23-04-2016 IPR023214 HAD-like domain RD1_RS11640 9d394540b87efa18ac7caf0e26e3b90f 232 Gene3D G3DSA:3.40.50.1000 97 229 2.0E-32 T 23-04-2016 IPR023214 HAD-like domain RD1_RS11640 9d394540b87efa18ac7caf0e26e3b90f 232 PANTHER PTHR18901 6 34 2.0E-31 T 23-04-2016 RD1_RS11640 9d394540b87efa18ac7caf0e26e3b90f 232 PANTHER PTHR18901 50 231 2.0E-31 T 23-04-2016 RD1_RS17805 6d03ceb03b247ac150570fe7fd40c820 585 Pfam PF02733 Dak1 domain 22 333 9.6E-116 T 23-04-2016 IPR004006 DhaK domain GO:0004371|GO:0006071 RD1_RS17805 6d03ceb03b247ac150570fe7fd40c820 585 Pfam PF02734 DAK2 domain 402 576 1.3E-45 T 23-04-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 RD1_RS17805 6d03ceb03b247ac150570fe7fd40c820 585 PANTHER PTHR28629 4 581 6.3E-191 T 23-04-2016 RD1_RS17805 6d03ceb03b247ac150570fe7fd40c820 585 Gene3D G3DSA:3.30.1180.20 190 337 2.4E-55 T 23-04-2016 RD1_RS17805 6d03ceb03b247ac150570fe7fd40c820 585 SUPERFAMILY SSF101473 372 578 1.57E-44 T 23-04-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 RD1_RS17805 6d03ceb03b247ac150570fe7fd40c820 585 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 379 575 7.8E-49 T 23-04-2016 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 KEGG: 00563+2.7.-.- RD1_RS17805 6d03ceb03b247ac150570fe7fd40c820 585 Gene3D G3DSA:3.40.50.10440 16 188 1.0E-58 T 23-04-2016 RD1_RS17805 6d03ceb03b247ac150570fe7fd40c820 585 SUPERFAMILY SSF82549 15 336 3.66E-110 T 23-04-2016 RD1_RS17805 6d03ceb03b247ac150570fe7fd40c820 585 SMART SM01120 402 577 7.4E-60 T 23-04-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 RD1_RS02645 ecaddc4c6ee24c72359dbd88fcedf7f1 340 Pfam PF13469 Sulfotransferase family 8 219 1.8E-31 T 23-04-2016 RD1_RS02645 ecaddc4c6ee24c72359dbd88fcedf7f1 340 Gene3D G3DSA:3.40.50.300 86 284 1.2E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02645 ecaddc4c6ee24c72359dbd88fcedf7f1 340 Gene3D G3DSA:3.40.50.300 8 42 1.2E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02645 ecaddc4c6ee24c72359dbd88fcedf7f1 340 SUPERFAMILY SSF52540 7 50 2.09E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02645 ecaddc4c6ee24c72359dbd88fcedf7f1 340 SUPERFAMILY SSF52540 105 282 2.09E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13135 06e62aaa45776895e2e1c746e278ce74 148 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 143 1.1E-43 T 23-04-2016 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 RD1_RS13135 06e62aaa45776895e2e1c746e278ce74 148 PANTHER PTHR33371 1 143 2.7E-18 T 23-04-2016 RD1_RS13135 06e62aaa45776895e2e1c746e278ce74 148 Pfam PF02470 MlaD protein 37 114 1.6E-18 T 23-04-2016 IPR003399 Mce/MlaD RD1_RS11655 85e8d6689322013ac8c27c4f05b08867 331 Pfam PF00990 Diguanylate cyclase, GGDEF domain 162 315 3.1E-42 T 23-04-2016 IPR000160 GGDEF domain RD1_RS11655 85e8d6689322013ac8c27c4f05b08867 331 PANTHER PTHR10799 70 315 2.9E-29 T 23-04-2016 RD1_RS11655 85e8d6689322013ac8c27c4f05b08867 331 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 159 315 9.7E-40 T 23-04-2016 IPR000160 GGDEF domain RD1_RS11655 85e8d6689322013ac8c27c4f05b08867 331 PANTHER PTHR10799:SF774 70 315 2.9E-29 T 23-04-2016 RD1_RS11655 85e8d6689322013ac8c27c4f05b08867 331 Gene3D G3DSA:3.30.70.270 164 326 1.7E-50 T 23-04-2016 RD1_RS11655 85e8d6689322013ac8c27c4f05b08867 331 SMART SM00267 151 320 2.1E-50 T 23-04-2016 IPR000160 GGDEF domain RD1_RS11655 85e8d6689322013ac8c27c4f05b08867 331 SUPERFAMILY SSF55073 167 322 4.16E-44 T 23-04-2016 IPR029787 Nucleotide cyclase RD1_RS02580 bd07057350dbc2bdfe01e77e6029b7a2 366 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 23-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS02580 bd07057350dbc2bdfe01e77e6029b7a2 366 TIGRFAM TIGR00033 aroC: chorismate synthase 10 356 5.6E-130 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS02580 bd07057350dbc2bdfe01e77e6029b7a2 366 PIRSF PIRSF001456 3 365 1.2E-136 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS02580 bd07057350dbc2bdfe01e77e6029b7a2 366 Pfam PF01264 Chorismate synthase 10 352 7.8E-134 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS02580 bd07057350dbc2bdfe01e77e6029b7a2 366 SUPERFAMILY SSF103263 3 357 1.18E-139 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS02580 bd07057350dbc2bdfe01e77e6029b7a2 366 PANTHER PTHR21085 2 357 1.4E-185 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS02580 bd07057350dbc2bdfe01e77e6029b7a2 366 Hamap MF_00300 Chorismate synthase [aroC]. 10 359 35.191 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS02580 bd07057350dbc2bdfe01e77e6029b7a2 366 ProSitePatterns PS00789 Chorismate synthase signature 3. 326 342 - T 23-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS02580 bd07057350dbc2bdfe01e77e6029b7a2 366 Gene3D G3DSA:3.60.150.10 9 359 1.2E-150 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RD1_RS06940 da8566e333528a7eb6bb7318d0c29524 213 PANTHER PTHR11080:SF19 50 203 7.1E-51 T 23-04-2016 RD1_RS06940 da8566e333528a7eb6bb7318d0c29524 213 PANTHER PTHR11080:SF19 5 34 7.1E-51 T 23-04-2016 RD1_RS06940 da8566e333528a7eb6bb7318d0c29524 213 PANTHER PTHR11080 50 203 7.1E-51 T 23-04-2016 RD1_RS06940 da8566e333528a7eb6bb7318d0c29524 213 PANTHER PTHR11080 5 34 7.1E-51 T 23-04-2016 RD1_RS06940 da8566e333528a7eb6bb7318d0c29524 213 Pfam PF00857 Isochorismatase family 14 204 1.7E-31 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RD1_RS06940 da8566e333528a7eb6bb7318d0c29524 213 Gene3D G3DSA:3.40.50.850 4 207 9.9E-51 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RD1_RS06940 da8566e333528a7eb6bb7318d0c29524 213 SUPERFAMILY SSF52499 6 210 1.44E-43 T 23-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RD1_RS16480 c1a0755e461ab9686035cf8eb0acbc8e 320 SMART SM00342 225 308 1.3E-23 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS16480 c1a0755e461ab9686035cf8eb0acbc8e 320 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 261 304 - T 23-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RD1_RS16480 c1a0755e461ab9686035cf8eb0acbc8e 320 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 277 292 1.6E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RD1_RS16480 c1a0755e461ab9686035cf8eb0acbc8e 320 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 292 308 1.6E-6 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RD1_RS16480 c1a0755e461ab9686035cf8eb0acbc8e 320 Gene3D G3DSA:1.10.10.60 208 247 2.3E-5 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS16480 c1a0755e461ab9686035cf8eb0acbc8e 320 Pfam PF14525 AraC-binding-like domain 17 187 5.5E-24 T 23-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RD1_RS16480 c1a0755e461ab9686035cf8eb0acbc8e 320 Gene3D G3DSA:1.10.10.60 260 312 8.3E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS16480 c1a0755e461ab9686035cf8eb0acbc8e 320 SUPERFAMILY SSF46689 261 312 4.3E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS16480 c1a0755e461ab9686035cf8eb0acbc8e 320 Pfam PF12833 Helix-turn-helix domain 232 309 5.4E-23 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS16480 c1a0755e461ab9686035cf8eb0acbc8e 320 PANTHER PTHR11019 60 316 6.4E-30 T 23-04-2016 RD1_RS16480 c1a0755e461ab9686035cf8eb0acbc8e 320 PANTHER PTHR11019:SF50 60 316 6.4E-30 T 23-04-2016 RD1_RS18945 7dcde1ba5bd32d8dace994f553ada1ab 800 PANTHER PTHR38344 4 797 1.8E-209 T 23-04-2016 RD1_RS18945 7dcde1ba5bd32d8dace994f553ada1ab 800 PANTHER PTHR38344:SF1 4 797 1.8E-209 T 23-04-2016 RD1_RS18945 7dcde1ba5bd32d8dace994f553ada1ab 800 Hamap MF_01871 UPF0753 protein . 11 777 22.219 T 23-04-2016 IPR018752 Uncharacterised protein family UPF0753 RD1_RS18945 7dcde1ba5bd32d8dace994f553ada1ab 800 Pfam PF10070 Uncharacterized protein conserved in bacteria (DUF2309) 18 762 1.4E-247 T 23-04-2016 IPR018752 Uncharacterised protein family UPF0753 RD1_RS02065 c90718c1c35c74a257c88d187b3ba504 220 SUPERFAMILY SSF54427 18 218 3.37E-50 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS02065 c90718c1c35c74a257c88d187b3ba504 220 PANTHER PTHR10721 86 216 1.9E-21 T 23-04-2016 RD1_RS02065 c90718c1c35c74a257c88d187b3ba504 220 Pfam PF04280 Tim44-like domain 73 218 1.9E-41 T 23-04-2016 IPR007379 Tim44-like domain RD1_RS02065 c90718c1c35c74a257c88d187b3ba504 220 SMART SM00978 72 220 1.6E-49 T 23-04-2016 IPR007379 Tim44-like domain RD1_RS02065 c90718c1c35c74a257c88d187b3ba504 220 PANTHER PTHR10721:SF2 86 216 1.9E-21 T 23-04-2016 RD1_RS02065 c90718c1c35c74a257c88d187b3ba504 220 PIRSF PIRSF031890 3 220 8.3E-65 T 23-04-2016 IPR016985 Uncharacterised conserved protein UCP031890, Tim44-related RD1_RS05850 0db23eb4cd5dcfa68b8da5ee2def7968 248 SMART SM00100 23 141 1.1E-18 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS05850 0db23eb4cd5dcfa68b8da5ee2def7968 248 Gene3D G3DSA:2.60.120.10 13 160 1.7E-15 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS05850 0db23eb4cd5dcfa68b8da5ee2def7968 248 Gene3D G3DSA:1.10.10.10 161 243 4.3E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS05850 0db23eb4cd5dcfa68b8da5ee2def7968 248 SUPERFAMILY SSF46785 155 238 2.86E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS05850 0db23eb4cd5dcfa68b8da5ee2def7968 248 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 203 218 2.4E-10 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RD1_RS05850 0db23eb4cd5dcfa68b8da5ee2def7968 248 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 187 203 2.4E-10 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RD1_RS05850 0db23eb4cd5dcfa68b8da5ee2def7968 248 SUPERFAMILY SSF51206 16 153 4.45E-26 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RD1_RS05850 0db23eb4cd5dcfa68b8da5ee2def7968 248 PANTHER PTHR24567 12 241 6.3E-43 T 23-04-2016 RD1_RS05850 0db23eb4cd5dcfa68b8da5ee2def7968 248 Pfam PF13545 Crp-like helix-turn-helix domain 158 235 1.1E-16 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RD1_RS05850 0db23eb4cd5dcfa68b8da5ee2def7968 248 PANTHER PTHR24567:SF28 12 241 6.3E-43 T 23-04-2016 RD1_RS05850 0db23eb4cd5dcfa68b8da5ee2def7968 248 Pfam PF00027 Cyclic nucleotide-binding domain 42 125 5.7E-12 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS05850 0db23eb4cd5dcfa68b8da5ee2def7968 248 SMART SM00419 181 230 1.4E-16 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RD1_RS08925 dfb2d01c2b48db5fa0b27ca6683e0ad7 513 Pfam PF13742 OB-fold nucleic acid binding domain 16 108 5.4E-23 T 23-04-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 RD1_RS08925 dfb2d01c2b48db5fa0b27ca6683e0ad7 513 PANTHER PTHR30008 10 372 6.8E-132 T 23-04-2016 RD1_RS08925 dfb2d01c2b48db5fa0b27ca6683e0ad7 513 PANTHER PTHR30008 418 508 6.8E-132 T 23-04-2016 RD1_RS08925 dfb2d01c2b48db5fa0b27ca6683e0ad7 513 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 17 358 9.0E-114 T 23-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RD1_RS08925 dfb2d01c2b48db5fa0b27ca6683e0ad7 513 Pfam PF02601 Exonuclease VII, large subunit 132 492 3.5E-91 T 23-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 RD1_RS08925 dfb2d01c2b48db5fa0b27ca6683e0ad7 513 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 13 496 26.551 T 23-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RD1_RS08925 dfb2d01c2b48db5fa0b27ca6683e0ad7 513 PANTHER PTHR30008:SF0 10 372 6.8E-132 T 23-04-2016 RD1_RS08925 dfb2d01c2b48db5fa0b27ca6683e0ad7 513 PANTHER PTHR30008:SF0 418 508 6.8E-132 T 23-04-2016 RD1_RS05235 e1c1a3e6e1afea82835e27f88e150349 1734 Pfam PF05729 NACHT domain 309 457 3.3E-7 T 23-04-2016 RD1_RS05235 e1c1a3e6e1afea82835e27f88e150349 1734 SMART SM00382 305 432 1.0E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS05235 e1c1a3e6e1afea82835e27f88e150349 1734 SUPERFAMILY SSF52540 305 451 7.63E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05235 e1c1a3e6e1afea82835e27f88e150349 1734 Gene3D G3DSA:3.40.50.300 295 449 3.3E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15370 d3bac9e737c64ddab0970573cd0a693f 288 Gene3D G3DSA:1.25.40.10 46 238 9.7E-12 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS15370 d3bac9e737c64ddab0970573cd0a693f 288 Pfam PF13525 Outer membrane lipoprotein 46 241 1.6E-45 T 23-04-2016 RD1_RS15370 d3bac9e737c64ddab0970573cd0a693f 288 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 7 248 38.96 T 23-04-2016 IPR017689 Outer membrane protein assembly factor BamD RD1_RS15370 d3bac9e737c64ddab0970573cd0a693f 288 PANTHER PTHR37423 1 287 2.9E-53 T 23-04-2016 RD1_RS15370 d3bac9e737c64ddab0970573cd0a693f 288 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 9 253 2.4E-80 T 23-04-2016 IPR017689 Outer membrane protein assembly factor BamD RD1_RS15370 d3bac9e737c64ddab0970573cd0a693f 288 SUPERFAMILY SSF48452 46 169 8.71E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS06760 945ce3dfc53b764a2684723e9a14845d 137 PANTHER PTHR33992 18 132 1.6E-18 T 23-04-2016 RD1_RS06760 945ce3dfc53b764a2684723e9a14845d 137 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 42 111 8.9E-14 T 23-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RD1_RS06760 945ce3dfc53b764a2684723e9a14845d 137 Gene3D G3DSA:3.30.230.10 26 134 7.0E-27 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RD1_RS06760 945ce3dfc53b764a2684723e9a14845d 137 Pfam PF00825 Ribonuclease P 26 132 2.2E-19 T 23-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RD1_RS06760 945ce3dfc53b764a2684723e9a14845d 137 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 73 87 - T 23-04-2016 IPR020539 Ribonuclease P, conserved site GO:0004526 RD1_RS06760 945ce3dfc53b764a2684723e9a14845d 137 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 22 135 14.183 T 23-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RD1_RS06760 945ce3dfc53b764a2684723e9a14845d 137 SUPERFAMILY SSF54211 24 133 1.26E-22 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RD1_RS06760 945ce3dfc53b764a2684723e9a14845d 137 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 28 109 3.0E-7 T 23-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RD1_RS17070 d6be795fe43e239ec5ac2262d0de1a4c 442 PANTHER PTHR30061:SF3 42 438 1.1E-62 T 23-04-2016 RD1_RS17070 d6be795fe43e239ec5ac2262d0de1a4c 442 Gene3D G3DSA:3.40.190.10 39 179 4.5E-20 T 23-04-2016 RD1_RS17070 d6be795fe43e239ec5ac2262d0de1a4c 442 Pfam PF01547 Bacterial extracellular solute-binding protein 47 347 4.2E-40 T 23-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 RD1_RS17070 d6be795fe43e239ec5ac2262d0de1a4c 442 PANTHER PTHR30061 42 438 1.1E-62 T 23-04-2016 RD1_RS17070 d6be795fe43e239ec5ac2262d0de1a4c 442 Gene3D G3DSA:3.40.190.10 180 367 6.2E-48 T 23-04-2016 RD1_RS17070 d6be795fe43e239ec5ac2262d0de1a4c 442 SUPERFAMILY SSF53850 32 434 1.24E-68 T 23-04-2016 RD1_RS11955 dd7e764e1acdd8e3d0c9b7f9d989a426 263 PANTHER PTHR39962 4 263 2.1E-46 T 23-04-2016 RD1_RS11955 dd7e764e1acdd8e3d0c9b7f9d989a426 263 Pfam PF06230 Protein of unknown function (DUF1009) 48 258 4.6E-62 T 23-04-2016 IPR010415 Protein of unknown function DUF1009 RD1_RS11955 dd7e764e1acdd8e3d0c9b7f9d989a426 263 PANTHER PTHR39962:SF1 4 263 2.1E-46 T 23-04-2016 RD1_RS10180 b42367078a3e1aefbecbfa9f93785eba 740 PIRSF PIRSF009407 1 740 0.0 T 23-04-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RD1_RS10180 b42367078a3e1aefbecbfa9f93785eba 740 SUPERFAMILY SSF53659 6 739 0.0 T 23-04-2016 RD1_RS10180 b42367078a3e1aefbecbfa9f93785eba 740 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 4 739 0.0 T 23-04-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RD1_RS10180 b42367078a3e1aefbecbfa9f93785eba 740 Pfam PF03971 Monomeric isocitrate dehydrogenase 9 739 0.0 T 23-04-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RD1_RS10180 b42367078a3e1aefbecbfa9f93785eba 740 PANTHER PTHR36999 3 740 0.0 T 23-04-2016 RD1_RS10180 b42367078a3e1aefbecbfa9f93785eba 740 Gene3D G3DSA:3.40.718.10 342 365 4.5E-29 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RD1_RS10180 b42367078a3e1aefbecbfa9f93785eba 740 Gene3D G3DSA:3.40.718.10 540 646 4.5E-29 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RD1_RS10180 b42367078a3e1aefbecbfa9f93785eba 740 Gene3D G3DSA:3.40.718.10 197 292 4.5E-29 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RD1_RS06580 eb8eb038c47c5f974fc7bec044f8d8d8 187 SUPERFAMILY SSF55282 10 186 6.59E-70 T 23-04-2016 IPR022803 Ribosomal protein L5 domain RD1_RS06580 eb8eb038c47c5f974fc7bec044f8d8d8 187 Gene3D G3DSA:3.30.1440.10 9 186 7.5E-72 T 23-04-2016 IPR022803 Ribosomal protein L5 domain RD1_RS06580 eb8eb038c47c5f974fc7bec044f8d8d8 187 PANTHER PTHR11994 4 186 4.0E-82 T 23-04-2016 RD1_RS06580 eb8eb038c47c5f974fc7bec044f8d8d8 187 ProSitePatterns PS00358 Ribosomal protein L5 signature. 65 81 - T 23-04-2016 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06580 eb8eb038c47c5f974fc7bec044f8d8d8 187 Pfam PF00673 ribosomal L5P family C-terminus 92 185 1.2E-39 T 23-04-2016 IPR031309 Ribosomal protein L5, C-terminal RD1_RS06580 eb8eb038c47c5f974fc7bec044f8d8d8 187 PIRSF PIRSF002161 4 187 2.7E-59 T 23-04-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 RD1_RS06580 eb8eb038c47c5f974fc7bec044f8d8d8 187 Pfam PF00281 Ribosomal protein L5 31 88 2.9E-21 T 23-04-2016 IPR031310 Ribosomal protein L5, N-terminal RD1_RS06580 eb8eb038c47c5f974fc7bec044f8d8d8 187 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 8 187 40.117 T 23-04-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 Gene3D G3DSA:3.40.50.620 183 232 2.2E-51 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 Gene3D G3DSA:3.40.50.620 5 69 2.2E-51 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 PRINTS PR00987 Glutamyl-tRNA synthetase signature 37 50 1.5E-26 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 PRINTS PR00987 Glutamyl-tRNA synthetase signature 8 20 1.5E-26 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 PRINTS PR00987 Glutamyl-tRNA synthetase signature 22 33 1.5E-26 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 PRINTS PR00987 Glutamyl-tRNA synthetase signature 197 205 1.5E-26 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 PRINTS PR00987 Glutamyl-tRNA synthetase signature 181 191 1.5E-26 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 5 465 29.863 T 23-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 5 462 5.0E-138 T 23-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 Gene3D G3DSA:1.10.10.350 371 464 2.2E-28 T 23-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 5 306 1.7E-91 T 23-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 PANTHER PTHR11451 4 317 6.9E-84 T 23-04-2016 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 Gene3D G3DSA:3.90.800.10 70 181 6.9E-29 T 23-04-2016 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 SUPERFAMILY SSF52374 4 300 1.37E-103 T 23-04-2016 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 Gene3D G3DSA:1.10.1160.10 235 314 5.2E-27 T 23-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 PANTHER PTHR11451:SF41 4 317 6.9E-84 T 23-04-2016 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 SUPERFAMILY SSF48163 301 464 4.05E-33 T 23-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RD1_RS14770 e7679a0734e2b5e13f0576a53b6118ba 466 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 22 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RD1_RS07570 380f387e028bed35801f140645c60671 426 SMART SM00829 44 399 7.0E-8 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RD1_RS07570 380f387e028bed35801f140645c60671 426 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 63 174 2.9E-15 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RD1_RS07570 380f387e028bed35801f140645c60671 426 SUPERFAMILY SSF51735 179 368 1.57E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS07570 380f387e028bed35801f140645c60671 426 PANTHER PTHR11695 287 400 3.3E-80 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS07570 380f387e028bed35801f140645c60671 426 PANTHER PTHR11695 49 264 3.3E-80 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS07570 380f387e028bed35801f140645c60671 426 Gene3D G3DSA:3.40.50.720 203 385 3.2E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS07570 380f387e028bed35801f140645c60671 426 Gene3D G3DSA:3.90.180.10 32 125 9.9E-9 T 23-04-2016 IPR011032 GroES-like RD1_RS07570 380f387e028bed35801f140645c60671 426 Gene3D G3DSA:3.90.180.10 157 202 9.9E-9 T 23-04-2016 IPR011032 GroES-like RD1_RS07570 380f387e028bed35801f140645c60671 426 SUPERFAMILY SSF50129 36 214 6.54E-34 T 23-04-2016 IPR011032 GroES-like RD1_RS07570 380f387e028bed35801f140645c60671 426 Pfam PF00107 Zinc-binding dehydrogenase 220 370 6.8E-36 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RD1_RS07570 380f387e028bed35801f140645c60671 426 PANTHER PTHR11695:SF294 287 400 3.3E-80 T 23-04-2016 RD1_RS07570 380f387e028bed35801f140645c60671 426 PANTHER PTHR11695:SF294 49 264 3.3E-80 T 23-04-2016 RD1_RS07570 380f387e028bed35801f140645c60671 426 TIGRFAM TIGR01751 crot-CoA-red: crotonyl-CoA carboxylase/reductase 29 418 1.1E-182 T 23-04-2016 IPR010085 Crotonyl-CoA reductase GO:0043880 KEGG: 00650+1.3.1.86 RD1_RS04580 13fa9b52ea153232c301111ceccca43a 108 Pfam PF09538 Protein of unknown function (FYDLN_acid) 1 107 9.5E-28 T 23-04-2016 IPR012644 Conserved hypothetical protein CHP02300, FYDLN acid RD1_RS04580 13fa9b52ea153232c301111ceccca43a 108 TIGRFAM TIGR02300 FYDLN_acid: TIGR02300 family protein 1 107 1.3E-19 T 23-04-2016 IPR012644 Conserved hypothetical protein CHP02300, FYDLN acid RD1_RS15335 80ca52507bd2fbe39652ed90ffca8be0 208 SUPERFAMILY SSF46565 145 201 3.4E-10 T 23-04-2016 IPR001623 DnaJ domain RD1_RS15335 80ca52507bd2fbe39652ed90ffca8be0 208 Gene3D G3DSA:1.10.287.110 145 202 3.5E-9 T 23-04-2016 IPR001623 DnaJ domain RD1_RS15335 80ca52507bd2fbe39652ed90ffca8be0 208 Pfam PF00226 DnaJ domain 151 199 1.3E-7 T 23-04-2016 IPR001623 DnaJ domain RD1_RS15335 80ca52507bd2fbe39652ed90ffca8be0 208 SMART SM00271 147 205 5.5E-4 T 23-04-2016 IPR001623 DnaJ domain RD1_RS11615 bc7bfd739e4e1e0aefa85dfaf49df68b 305 PANTHER PTHR22911:SF65 5 303 1.3E-26 T 23-04-2016 RD1_RS11615 bc7bfd739e4e1e0aefa85dfaf49df68b 305 PANTHER PTHR22911 5 303 1.3E-26 T 23-04-2016 RD1_RS11615 bc7bfd739e4e1e0aefa85dfaf49df68b 305 Pfam PF00892 EamA-like transporter family 162 302 1.3E-6 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS11615 bc7bfd739e4e1e0aefa85dfaf49df68b 305 SUPERFAMILY SSF103481 210 303 2.88E-9 T 23-04-2016 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 Pfam PF00330 Aconitase family (aconitate hydratase) 8 459 1.3E-154 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 ProSitePatterns PS00450 Aconitase family signature 1. 341 357 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 Gene3D G3DSA:3.30.499.10 296 467 8.9E-63 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 PANTHER PTHR11670:SF38 1 310 7.7E-302 T 23-04-2016 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 PANTHER PTHR11670:SF38 329 467 7.7E-302 T 23-04-2016 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 ProSitePatterns PS01244 Aconitase family signature 2. 401 414 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 SUPERFAMILY SSF53732 2 467 3.92E-166 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 467 1.5E-237 T 23-04-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 PANTHER PTHR11670 1 310 7.7E-302 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 PANTHER PTHR11670 329 467 7.7E-302 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 Gene3D G3DSA:3.30.499.10 3 161 2.5E-25 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 Gene3D G3DSA:3.40.1060.10 169 282 2.0E-38 T 23-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 468 59.628 T 23-04-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 PRINTS PR00415 Aconitase family signature 122 135 9.3E-50 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 PRINTS PR00415 Aconitase family signature 136 151 9.3E-50 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 PRINTS PR00415 Aconitase family signature 198 211 9.3E-50 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 PRINTS PR00415 Aconitase family signature 289 303 9.3E-50 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 PRINTS PR00415 Aconitase family signature 212 225 9.3E-50 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 PRINTS PR00415 Aconitase family signature 111 119 9.3E-50 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 PRINTS PR00415 Aconitase family signature 345 356 9.3E-50 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 PRINTS PR00415 Aconitase family signature 85 98 9.3E-50 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS02830 ea2c8ab90870a7c17cbc14bb27689aa4 468 PRINTS PR00415 Aconitase family signature 401 414 9.3E-50 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RD1_RS05945 ebacf8015e23857f3b16de432e9e8f79 189 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 65 176 2.2E-15 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS16650 e973e1fc83978925ec55e82de88d17a0 307 PANTHER PTHR30406:SF2 1 307 6.4E-73 T 23-04-2016 RD1_RS16650 e973e1fc83978925ec55e82de88d17a0 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 304 2.1E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS16650 e973e1fc83978925ec55e82de88d17a0 307 SUPERFAMILY SSF161098 71 296 1.83E-53 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS16650 e973e1fc83978925ec55e82de88d17a0 307 PANTHER PTHR30406 1 307 6.4E-73 T 23-04-2016 RD1_RS16650 e973e1fc83978925ec55e82de88d17a0 307 Gene3D G3DSA:1.10.3720.10 75 304 2.0E-51 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS01705 e084c6fe0f44d2ed7509dadff8487cc7 206 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 12 195 2.8E-25 T 23-04-2016 IPR003744 Protein of unknown function DUF165 RD1_RS01705 e084c6fe0f44d2ed7509dadff8487cc7 206 PANTHER PTHR34300:SF1 170 196 1.7E-37 T 23-04-2016 RD1_RS01705 e084c6fe0f44d2ed7509dadff8487cc7 206 PANTHER PTHR34300:SF1 9 148 1.7E-37 T 23-04-2016 RD1_RS01705 e084c6fe0f44d2ed7509dadff8487cc7 206 PANTHER PTHR34300 170 196 1.7E-37 T 23-04-2016 RD1_RS01705 e084c6fe0f44d2ed7509dadff8487cc7 206 PANTHER PTHR34300 9 148 1.7E-37 T 23-04-2016 RD1_RS01705 e084c6fe0f44d2ed7509dadff8487cc7 206 Pfam PF02592 Putative vitamin uptake transporter 32 197 1.2E-34 T 23-04-2016 IPR003744 Protein of unknown function DUF165 RD1_RS08960 15a3b85ecd09cddbb5452dab70a0208c 330 SUPERFAMILY SSF53474 32 209 3.98E-13 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08960 15a3b85ecd09cddbb5452dab70a0208c 330 Gene3D G3DSA:3.40.50.1820 34 263 7.2E-15 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08960 15a3b85ecd09cddbb5452dab70a0208c 330 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 78 145 3.2E-8 T 23-04-2016 IPR010297 Protein of unknown function DUF900, hydrolase-like RD1_RS10100 5da4fe9aaf0a84b0aa2c64af6a4ce61b 424 PANTHER PTHR33362 1 421 3.6E-114 T 23-04-2016 RD1_RS10100 5da4fe9aaf0a84b0aa2c64af6a4ce61b 424 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 421 6.7E-119 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS10100 5da4fe9aaf0a84b0aa2c64af6a4ce61b 424 PIRSF PIRSF006066 1 423 4.7E-116 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS10100 5da4fe9aaf0a84b0aa2c64af6a4ce61b 424 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 414 2.5E-104 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS10100 5da4fe9aaf0a84b0aa2c64af6a4ce61b 424 PANTHER PTHR33362:SF5 1 421 3.6E-114 T 23-04-2016 RD1_RS18805 8d0c2995d2cd13721a178f8ef7d87ee7 148 SUPERFAMILY SSF81324 55 134 2.88E-10 T 23-04-2016 RD1_RS18805 8d0c2995d2cd13721a178f8ef7d87ee7 148 Gene3D G3DSA:1.10.287.70 55 133 8.7E-6 T 23-04-2016 RD1_RS18805 8d0c2995d2cd13721a178f8ef7d87ee7 148 Pfam PF07885 Ion channel 86 130 6.8E-7 T 23-04-2016 IPR013099 Potassium channel domain RD1_RS16425 3a33858609baf0974257ad010277ddf4 422 Gene3D G3DSA:3.40.190.10 43 165 6.3E-16 T 23-04-2016 RD1_RS16425 3a33858609baf0974257ad010277ddf4 422 Pfam PF13416 Bacterial extracellular solute-binding protein 48 356 6.2E-48 T 23-04-2016 RD1_RS16425 3a33858609baf0974257ad010277ddf4 422 PANTHER PTHR30061:SF7 8 422 2.2E-87 T 23-04-2016 RD1_RS16425 3a33858609baf0974257ad010277ddf4 422 PANTHER PTHR30061 8 422 2.2E-87 T 23-04-2016 RD1_RS16425 3a33858609baf0974257ad010277ddf4 422 SUPERFAMILY SSF53850 27 414 6.42E-77 T 23-04-2016 RD1_RS16425 3a33858609baf0974257ad010277ddf4 422 Gene3D G3DSA:3.40.190.10 166 341 1.0E-40 T 23-04-2016 RD1_RS02425 6c5cea0c59b5b78462c1af872e21c008 514 SUPERFAMILY SSF53300 103 220 5.75E-13 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS02425 6c5cea0c59b5b78462c1af872e21c008 514 SUPERFAMILY SSF48452 342 433 6.33E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS02425 6c5cea0c59b5b78462c1af872e21c008 514 Pfam PF13519 von Willebrand factor type A domain 105 210 1.7E-15 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS02425 6c5cea0c59b5b78462c1af872e21c008 514 Gene3D G3DSA:1.25.40.10 343 432 9.6E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS10825 b47f623c56661c24ee355f7f0983eacf 728 Gene3D G3DSA:2.160.20.10 274 714 3.0E-33 T 23-04-2016 IPR012334 Pectin lyase fold RD1_RS10825 b47f623c56661c24ee355f7f0983eacf 728 SUPERFAMILY SSF51126 296 720 1.33E-51 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RD1_RS10825 b47f623c56661c24ee355f7f0983eacf 728 SMART SM00710 514 536 250.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS10825 b47f623c56661c24ee355f7f0983eacf 728 SMART SM00710 381 403 320.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS10825 b47f623c56661c24ee355f7f0983eacf 728 SMART SM00710 447 488 6300.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS10825 b47f623c56661c24ee355f7f0983eacf 728 SMART SM00710 490 512 0.55 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS10825 b47f623c56661c24ee355f7f0983eacf 728 SMART SM00710 404 432 5900.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS10825 b47f623c56661c24ee355f7f0983eacf 728 SMART SM00710 541 562 310.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS10825 b47f623c56661c24ee355f7f0983eacf 728 SMART SM00710 570 597 890.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS10825 b47f623c56661c24ee355f7f0983eacf 728 Pfam PF13229 Right handed beta helix region 374 561 3.5E-13 T 23-04-2016 RD1_RS11780 ae0b392c34114cc1ff076d7dd4d02547 231 SUPERFAMILY SSF52833 21 230 7.69E-72 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS11780 ae0b392c34114cc1ff076d7dd4d02547 231 Pfam PF06764 Protein of unknown function (DUF1223) 26 207 7.1E-62 T 23-04-2016 IPR010634 Protein of unknown function DUF1223 RD1_RS11780 ae0b392c34114cc1ff076d7dd4d02547 231 PANTHER PTHR36057 20 197 2.2E-33 T 23-04-2016 RD1_RS11780 ae0b392c34114cc1ff076d7dd4d02547 231 PANTHER PTHR36057:SF1 20 197 2.2E-33 T 23-04-2016 RD1_RS17340 112ee26c21878fe4a0351f20facd83c2 422 PANTHER PTHR30304 123 422 2.0E-81 T 23-04-2016 RD1_RS17340 112ee26c21878fe4a0351f20facd83c2 422 SUPERFAMILY SSF142764 5 419 4.18E-123 T 23-04-2016 RD1_RS17340 112ee26c21878fe4a0351f20facd83c2 422 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 257 412 1.4E-39 T 23-04-2016 IPR031475 Putative nucleotide-binding C-terminal domain RD1_RS17340 112ee26c21878fe4a0351f20facd83c2 422 Pfam PF07005 Putative sugar-binding N-terminal domain 5 229 7.7E-67 T 23-04-2016 IPR010737 Putative sugar-binding, N-terminal domain RD1_RS17340 112ee26c21878fe4a0351f20facd83c2 422 PANTHER PTHR30304:SF3 123 422 2.0E-81 T 23-04-2016 RD1_RS02165 318b0d8c0c2ba24480188fab8a304716 140 PANTHER PTHR14087 1 136 2.1E-66 T 23-04-2016 RD1_RS02165 318b0d8c0c2ba24480188fab8a304716 140 SUPERFAMILY SSF88697 1 137 6.55E-60 T 23-04-2016 IPR015947 PUA-like domain RD1_RS02165 318b0d8c0c2ba24480188fab8a304716 140 Gene3D G3DSA:3.10.590.10 1 134 7.9E-34 T 23-04-2016 IPR002740 EVE domain RD1_RS02165 318b0d8c0c2ba24480188fab8a304716 140 Pfam PF01878 EVE domain 2 134 2.1E-49 T 23-04-2016 IPR002740 EVE domain RD1_RS01360 ca39f8eda25491e8823bafd81a403aa7 80 Pfam PF13773 Domain of unknown function (DUF4170) 3 68 1.7E-35 T 23-04-2016 IPR025226 Protein of unknown function DUF4170 RD1_RS14295 867e5010822b077f3de91d73b0a2569c 116 Gene3D G3DSA:1.10.150.20 1 89 1.6E-22 T 23-04-2016 RD1_RS14295 867e5010822b077f3de91d73b0a2569c 116 Pfam PF04994 TfoX C-terminal domain 3 80 9.6E-18 T 23-04-2016 IPR007077 TfoX, C-terminal RD1_RS02680 70bfeb30140276c96417e499fd5b98f7 334 SUPERFAMILY SSF64518 12 334 1.44E-10 T 23-04-2016 RD1_RS02680 70bfeb30140276c96417e499fd5b98f7 334 Pfam PF00700 Bacterial flagellin C-terminal helical region 259 334 3.1E-7 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RD1_RS12540 dcd275d44e9caca0ff2edd2ce7f3603f 206 SUPERFAMILY SSF51391 6 204 6.93E-40 T 23-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS12540 dcd275d44e9caca0ff2edd2ce7f3603f 206 PANTHER PTHR20857 2 175 7.6E-13 T 23-04-2016 RD1_RS12540 dcd275d44e9caca0ff2edd2ce7f3603f 206 Pfam PF02581 Thiamine monophosphate synthase/TENI 9 175 9.4E-27 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS12540 dcd275d44e9caca0ff2edd2ce7f3603f 206 Gene3D G3DSA:3.20.20.70 4 205 2.9E-35 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS18580 27e002dd2ad0be414122e022ad992a46 140 Pfam PF07370 Protein of unknown function (DUF1489) 4 140 2.6E-55 T 23-04-2016 IPR008320 Uncharacterised conserved protein UCP032025 RD1_RS18580 27e002dd2ad0be414122e022ad992a46 140 PIRSF PIRSF032025 1 140 3.5E-49 T 23-04-2016 IPR008320 Uncharacterised conserved protein UCP032025 RD1_RS04095 de2daedbe9fb4bfc6399ee94d3667a86 169 Gene3D G3DSA:1.10.760.10 65 138 4.2E-11 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS04095 de2daedbe9fb4bfc6399ee94d3667a86 169 TIGRFAM TIGR03874 4cys_cytochr: c-type cytochrome, methanol metabolism-related 32 168 7.9E-76 T 23-04-2016 IPR022411 C-type cytochrome, methanol metabolism-related RD1_RS04095 de2daedbe9fb4bfc6399ee94d3667a86 169 SUPERFAMILY SSF46626 11 32 5.96E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS04095 de2daedbe9fb4bfc6399ee94d3667a86 169 SUPERFAMILY SSF46626 64 151 5.96E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS04095 de2daedbe9fb4bfc6399ee94d3667a86 169 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 65 124 1.5E-6 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS01790 905d0f51704c2940ec1365ee9288bd37 408 PANTHER PTHR23100:SF0 1 408 1.4E-157 T 23-04-2016 RD1_RS01790 905d0f51704c2940ec1365ee9288bd37 408 Gene3D G3DSA:3.60.70.12 17 280 3.6E-90 T 23-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RD1_RS01790 905d0f51704c2940ec1365ee9288bd37 408 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 408 142.872 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RD1_RS01790 905d0f51704c2940ec1365ee9288bd37 408 PANTHER PTHR23100 1 408 1.4E-157 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RD1_RS01790 905d0f51704c2940ec1365ee9288bd37 408 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 20 408 1.3E-115 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RD1_RS01790 905d0f51704c2940ec1365ee9288bd37 408 Pfam PF01960 ArgJ family 27 408 2.2E-137 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RD1_RS01790 905d0f51704c2940ec1365ee9288bd37 408 SUPERFAMILY SSF56266 21 405 4.05E-134 T 23-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RD1_RS01790 905d0f51704c2940ec1365ee9288bd37 408 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 32 406 6.0E-139 T 23-04-2016 RD1_RS17770 d8a7616e282a60f749ad9bb8f0724bc6 289 PANTHER PTHR32243:SF11 1 289 1.9E-92 T 23-04-2016 RD1_RS17770 d8a7616e282a60f749ad9bb8f0724bc6 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 282 1.2E-20 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17770 d8a7616e282a60f749ad9bb8f0724bc6 289 SUPERFAMILY SSF161098 13 288 6.64E-64 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17770 d8a7616e282a60f749ad9bb8f0724bc6 289 Gene3D G3DSA:1.10.3720.10 9 275 1.1E-59 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17770 d8a7616e282a60f749ad9bb8f0724bc6 289 PANTHER PTHR32243 1 289 1.9E-92 T 23-04-2016 RD1_RS10265 9dbd15481ebfad564353a66bb7543eb1 326 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 319 1.2E-39 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10265 9dbd15481ebfad564353a66bb7543eb1 326 Gene3D G3DSA:1.10.3720.10 90 311 4.9E-17 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10265 9dbd15481ebfad564353a66bb7543eb1 326 PANTHER PTHR30465:SF47 1 320 1.9E-154 T 23-04-2016 RD1_RS10265 9dbd15481ebfad564353a66bb7543eb1 326 SUPERFAMILY SSF161098 89 305 8.18E-17 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10265 9dbd15481ebfad564353a66bb7543eb1 326 PANTHER PTHR30465 1 320 1.9E-154 T 23-04-2016 RD1_RS03905 1896481b2933dbd9dce4257eeb7fe4cb 437 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 24 433 6.8E-100 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS03905 1896481b2933dbd9dce4257eeb7fe4cb 437 PANTHER PTHR33362 12 437 8.9E-103 T 23-04-2016 RD1_RS03905 1896481b2933dbd9dce4257eeb7fe4cb 437 PIRSF PIRSF006066 8 437 3.2E-82 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS03905 1896481b2933dbd9dce4257eeb7fe4cb 437 PANTHER PTHR33362:SF7 12 437 8.9E-103 T 23-04-2016 RD1_RS03905 1896481b2933dbd9dce4257eeb7fe4cb 437 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 14 428 5.2E-88 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS18995 d31c1c4acd91e1a427abcc942ff9c0de 277 SUPERFAMILY SSF49695 23 106 3.15E-12 T 23-04-2016 IPR011024 Gamma-crystallin-related RD1_RS18995 d31c1c4acd91e1a427abcc942ff9c0de 277 Gene3D G3DSA:2.60.20.10 22 107 1.7E-17 T 23-04-2016 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 Gene3D G3DSA:3.40.50.300 452 673 3.1E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 Gene3D G3DSA:1.10.8.60 674 757 1.4E-30 T 23-04-2016 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 SMART SM01086 663 752 7.0E-34 T 23-04-2016 IPR019489 Clp ATPase, C-terminal RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 543 561 8.3E-38 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 572 590 8.3E-38 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 501 519 8.3E-38 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 605 619 8.3E-38 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 Gene3D G3DSA:1.10.1780.10 4 144 6.3E-38 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 SUPERFAMILY SSF81923 4 144 3.4E-55 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 PANTHER PTHR11638:SF111 4 141 0.0 T 23-04-2016 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 PANTHER PTHR11638:SF111 159 773 0.0 T 23-04-2016 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 PANTHER PTHR11638 4 141 0.0 T 23-04-2016 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 15 63 2.5E-12 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 663 743 9.8E-24 T 23-04-2016 IPR019489 Clp ATPase, C-terminal RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 312 324 - T 23-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 SUPERFAMILY SSF52540 178 421 3.14E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 5 744 0.0 T 23-04-2016 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0004176 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 Pfam PF07724 AAA domain (Cdc48 subfamily) 496 656 3.2E-47 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 Gene3D G3DSA:1.10.8.60 361 445 2.8E-27 T 23-04-2016 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 PANTHER PTHR11638 159 773 0.0 T 23-04-2016 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 SUPERFAMILY SSF52540 447 735 2.07E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 Gene3D G3DSA:3.40.50.300 178 360 8.1E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 SMART SM00382 497 660 2.8E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 SMART SM00382 216 361 6.9E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 528 546 - T 23-04-2016 IPR028299 ClpA/B, conserved site 2 RD1_RS16290 c9a02625b156fc598968c2a2b3789e9d 773 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 221 326 9.2E-13 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RD1_RS11550 1d59c6663039ff267934b65ce2393e39 184 SMART SM00028 132 165 19.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS11550 1d59c6663039ff267934b65ce2393e39 184 SMART SM00028 98 131 0.0056 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RD1_RS11550 1d59c6663039ff267934b65ce2393e39 184 SUPERFAMILY SSF48452 62 166 4.81E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS11550 1d59c6663039ff267934b65ce2393e39 184 PANTHER PTHR23083 79 163 3.9E-14 T 23-04-2016 RD1_RS11550 1d59c6663039ff267934b65ce2393e39 184 Pfam PF14559 Tetratricopeptide repeat 111 163 5.7E-6 T 23-04-2016 RD1_RS11550 1d59c6663039ff267934b65ce2393e39 184 Gene3D G3DSA:1.25.40.10 64 163 2.1E-18 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS17130 57938dae694e742fb0ccb36192f6eb3b 2457 Gene3D G3DSA:3.30.1330.60 567 627 9.5E-5 T 23-04-2016 IPR006665 OmpA-like domain RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 Gene3D G3DSA:3.50.50.60 104 307 4.9E-49 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 PANTHER PTHR22912:SF180 4 385 2.2E-98 T 23-04-2016 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 Gene3D G3DSA:3.30.390.30 317 400 1.7E-28 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 Gene3D G3DSA:3.50.50.60 2 103 7.4E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 3.8E-19 T 23-04-2016 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 231 245 3.8E-19 T 23-04-2016 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 145 170 3.8E-19 T 23-04-2016 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 270 277 3.8E-19 T 23-04-2016 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 298 5.4E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 3.3E-26 T 23-04-2016 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 230 246 3.3E-26 T 23-04-2016 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 145 163 3.3E-26 T 23-04-2016 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 255 277 3.3E-26 T 23-04-2016 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 99 117 3.3E-26 T 23-04-2016 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 PANTHER PTHR22912 4 385 2.2E-98 T 23-04-2016 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 SUPERFAMILY SSF55424 310 401 9.61E-26 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 SUPERFAMILY SSF51905 2 162 1.98E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 SUPERFAMILY SSF51905 191 333 1.98E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS04360 35b3ca3c298d2828c32ed2e92c49ea27 402 Pfam PF14759 Reductase C-terminal 317 400 1.7E-28 T 23-04-2016 IPR028202 Reductase, C-terminal RD1_RS08245 307f3a8a513518f2a7d2c2a18afb7795 417 SUPERFAMILY SSF54373 264 342 3.34E-7 T 23-04-2016 RD1_RS08245 307f3a8a513518f2a7d2c2a18afb7795 417 SUPERFAMILY SSF51905 342 402 1.3E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08245 307f3a8a513518f2a7d2c2a18afb7795 417 SUPERFAMILY SSF51905 31 252 1.3E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08245 307f3a8a513518f2a7d2c2a18afb7795 417 Gene3D G3DSA:3.30.9.10 114 172 3.1E-8 T 23-04-2016 RD1_RS08245 307f3a8a513518f2a7d2c2a18afb7795 417 Gene3D G3DSA:3.30.9.10 252 341 3.1E-8 T 23-04-2016 RD1_RS08245 307f3a8a513518f2a7d2c2a18afb7795 417 Pfam PF01266 FAD dependent oxidoreductase 33 380 1.8E-55 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS08245 307f3a8a513518f2a7d2c2a18afb7795 417 TIGRFAM TIGR01373 soxB: sarcosine oxidase, beta subunit family 2 406 1.6E-199 T 23-04-2016 IPR006278 Sarcosine oxidase subunit beta GO:0008115|GO:0046653|GO:0055114 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS08245 307f3a8a513518f2a7d2c2a18afb7795 417 Gene3D G3DSA:3.50.50.60 342 401 1.4E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08245 307f3a8a513518f2a7d2c2a18afb7795 417 Gene3D G3DSA:3.50.50.60 173 251 1.4E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08245 307f3a8a513518f2a7d2c2a18afb7795 417 Gene3D G3DSA:3.50.50.60 21 110 1.4E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS08245 307f3a8a513518f2a7d2c2a18afb7795 417 PANTHER PTHR13847 19 408 1.6E-46 T 23-04-2016 RD1_RS01675 09fe965dd16cd1120fa6a644c70e8576 259 PANTHER PTHR30283 2 254 2.8E-90 T 23-04-2016 RD1_RS01675 09fe965dd16cd1120fa6a644c70e8576 259 Pfam PF03883 Protein of unknown function (DUF328) 1 243 3.5E-82 T 23-04-2016 IPR005583 Peroxide stress protein YaaA RD1_RS01675 09fe965dd16cd1120fa6a644c70e8576 259 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 31.557 T 23-04-2016 IPR005583 Peroxide stress protein YaaA RD1_RS01675 09fe965dd16cd1120fa6a644c70e8576 259 PANTHER PTHR30283:SF3 2 254 2.8E-90 T 23-04-2016 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 SUPERFAMILY SSF51735 233 378 3.94E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS12655 207f61472699fa638fbb67c650e08624 458 PANTHER PTHR13789:SF225 430 456 4.1E-34 T 23-04-2016 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 PANTHER PTHR13789:SF225 1 171 4.1E-34 T 23-04-2016 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 Gene3D G3DSA:3.40.50.720 1 153 2.0E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS12655 207f61472699fa638fbb67c650e08624 458 Gene3D G3DSA:3.40.50.720 233 379 1.1E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS12655 207f61472699fa638fbb67c650e08624 458 SUPERFAMILY SSF51735 1 152 1.67E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS12655 207f61472699fa638fbb67c650e08624 458 Gene3D G3DSA:3.30.70.1450 381 453 9.3E-10 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 Gene3D G3DSA:3.30.70.1450 156 227 2.3E-6 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 Pfam PF02254 TrkA-N domain 236 354 5.0E-23 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 Pfam PF02254 TrkA-N domain 3 126 3.6E-26 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 PANTHER PTHR13789 430 456 4.1E-34 T 23-04-2016 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 PANTHER PTHR13789 1 171 4.1E-34 T 23-04-2016 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 Pfam PF02080 TrkA-C domain 159 227 1.2E-7 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 Pfam PF02080 TrkA-C domain 384 451 2.1E-14 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 SUPERFAMILY SSF116726 364 451 3.14E-15 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 1.9E-22 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 1.9E-22 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 1.9E-22 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 1.9E-22 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 1.9E-22 T 23-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RD1_RS12655 207f61472699fa638fbb67c650e08624 458 SUPERFAMILY SSF116726 144 228 1.1E-13 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS08650 63b8cf4f860ef21cf88a88dbf1c256b2 238 SUPERFAMILY SSF53300 22 229 1.44E-20 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS08650 63b8cf4f860ef21cf88a88dbf1c256b2 238 Pfam PF06707 Protein of unknown function (DUF1194) 22 232 1.0E-66 T 23-04-2016 IPR010607 Protein of unknown function DUF1194 RD1_RS08650 63b8cf4f860ef21cf88a88dbf1c256b2 238 Gene3D G3DSA:3.40.50.410 27 177 2.5E-4 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS15895 3d6c6e6de547ddb2358e8961c7665f30 98 Pfam PF01527 Transposase 1 75 5.1E-9 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RD1_RS15895 3d6c6e6de547ddb2358e8961c7665f30 98 SUPERFAMILY SSF48295 1 62 1.99E-14 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RD1_RS15895 3d6c6e6de547ddb2358e8961c7665f30 98 Gene3D G3DSA:1.10.10.10 3 51 2.8E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS15895 3d6c6e6de547ddb2358e8961c7665f30 98 PANTHER PTHR33215:SF2 1 84 9.4E-30 T 23-04-2016 RD1_RS15895 3d6c6e6de547ddb2358e8961c7665f30 98 PANTHER PTHR33215 1 84 9.4E-30 T 23-04-2016 RD1_RS01365 e083c200dc6114306d062031ee014b6c 415 PANTHER PTHR23417 15 96 3.1E-19 T 23-04-2016 RD1_RS01365 e083c200dc6114306d062031ee014b6c 415 PANTHER PTHR23417 175 415 3.1E-19 T 23-04-2016 RD1_RS01365 e083c200dc6114306d062031ee014b6c 415 PANTHER PTHR23417 115 125 3.1E-19 T 23-04-2016 RD1_RS01365 e083c200dc6114306d062031ee014b6c 415 PANTHER PTHR23417:SF2 15 96 3.1E-19 T 23-04-2016 RD1_RS01365 e083c200dc6114306d062031ee014b6c 415 PANTHER PTHR23417:SF2 175 415 3.1E-19 T 23-04-2016 RD1_RS01365 e083c200dc6114306d062031ee014b6c 415 PANTHER PTHR23417:SF2 115 125 3.1E-19 T 23-04-2016 RD1_RS01365 e083c200dc6114306d062031ee014b6c 415 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 28 186 1.2E-19 T 23-04-2016 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675|UniPathway: UPA00958 RD1_RS07270 91cebd2f1ef3d09c119f48100e3961dd 515 Gene3D G3DSA:1.10.760.10 23 93 8.4E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07270 91cebd2f1ef3d09c119f48100e3961dd 515 Gene3D G3DSA:2.140.10.20 228 502 1.5E-57 T 23-04-2016 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain RD1_RS07270 91cebd2f1ef3d09c119f48100e3961dd 515 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 23 91 4.8E-11 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07270 91cebd2f1ef3d09c119f48100e3961dd 515 Gene3D G3DSA:2.130.10.10 127 227 1.4E-11 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RD1_RS07270 91cebd2f1ef3d09c119f48100e3961dd 515 SUPERFAMILY SSF46626 23 94 1.58E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07270 91cebd2f1ef3d09c119f48100e3961dd 515 SUPERFAMILY SSF51004 117 508 1.31E-80 T 23-04-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain RD1_RS07270 91cebd2f1ef3d09c119f48100e3961dd 515 Pfam PF02239 Cytochrome D1 heme domain 127 506 2.7E-104 T 23-04-2016 RD1_RS13260 2c29fb306002d8246dffe25362495fea 601 PANTHER PTHR21000:SF9 3 600 0.0 T 23-04-2016 RD1_RS13260 2c29fb306002d8246dffe25362495fea 601 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 155 165 - T 23-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS13260 2c29fb306002d8246dffe25362495fea 601 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 506 517 - T 23-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS13260 2c29fb306002d8246dffe25362495fea 601 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 6 600 2.5E-279 T 23-04-2016 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12|UniPathway: UPA00226 RD1_RS13260 2c29fb306002d8246dffe25362495fea 601 Pfam PF00920 Dehydratase family 68 597 8.6E-156 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS13260 2c29fb306002d8246dffe25362495fea 601 SUPERFAMILY SSF52016 420 599 1.88E-54 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RD1_RS13260 2c29fb306002d8246dffe25362495fea 601 SUPERFAMILY SSF143975 3 419 1.23E-139 T 23-04-2016 RD1_RS13260 2c29fb306002d8246dffe25362495fea 601 PANTHER PTHR21000 3 600 0.0 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS11755 96426c8d6f8f88d7a2ed24b18df02fd8 179 ProSitePatterns PS00194 Thioredoxin family active site. 69 87 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RD1_RS11755 96426c8d6f8f88d7a2ed24b18df02fd8 179 Pfam PF08534 Redoxin 39 161 2.2E-15 T 23-04-2016 IPR013740 Redoxin GO:0016491 RD1_RS11755 96426c8d6f8f88d7a2ed24b18df02fd8 179 PANTHER PTHR10681 7 175 3.1E-38 T 23-04-2016 RD1_RS11755 96426c8d6f8f88d7a2ed24b18df02fd8 179 SUPERFAMILY SSF52833 44 174 4.01E-30 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS11755 96426c8d6f8f88d7a2ed24b18df02fd8 179 PANTHER PTHR10681:SF107 7 175 3.1E-38 T 23-04-2016 RD1_RS11755 96426c8d6f8f88d7a2ed24b18df02fd8 179 Gene3D G3DSA:3.40.30.10 12 175 1.5E-34 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS11755 96426c8d6f8f88d7a2ed24b18df02fd8 179 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 9 175 3.6E-54 T 23-04-2016 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 RD1_RS01905 770d5e60648486c7b12a1bebd149c1c7 392 Gene3D G3DSA:3.30.460.10 20 157 1.2E-40 T 23-04-2016 RD1_RS01905 770d5e60648486c7b12a1bebd149c1c7 392 SUPERFAMILY SSF81891 155 390 3.53E-37 T 23-04-2016 RD1_RS01905 770d5e60648486c7b12a1bebd149c1c7 392 PANTHER PTHR13734 35 247 3.1E-61 T 23-04-2016 RD1_RS01905 770d5e60648486c7b12a1bebd149c1c7 392 SUPERFAMILY SSF81301 15 153 2.4E-37 T 23-04-2016 RD1_RS01905 770d5e60648486c7b12a1bebd149c1c7 392 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 190 246 3.8E-11 T 23-04-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain RD1_RS01905 770d5e60648486c7b12a1bebd149c1c7 392 Gene3D G3DSA:1.10.3090.10 158 357 9.5E-34 T 23-04-2016 RD1_RS01905 770d5e60648486c7b12a1bebd149c1c7 392 Pfam PF01743 Poly A polymerase head domain 35 157 2.6E-28 T 23-04-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 RD1_RS11580 b43adb2a5251984ee849ffd7ba35d4e9 410 Pfam PF07690 Major Facilitator Superfamily 204 379 3.4E-18 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS11580 b43adb2a5251984ee849ffd7ba35d4e9 410 SUPERFAMILY SSF103473 5 377 3.53E-40 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS11580 b43adb2a5251984ee849ffd7ba35d4e9 410 Gene3D G3DSA:1.20.1250.20 7 179 2.6E-13 T 23-04-2016 RD1_RS11580 b43adb2a5251984ee849ffd7ba35d4e9 410 PANTHER PTHR23521 1 392 6.6E-70 T 23-04-2016 RD1_RS11580 b43adb2a5251984ee849ffd7ba35d4e9 410 PANTHER PTHR23521:SF2 1 392 6.6E-70 T 23-04-2016 RD1_RS11580 b43adb2a5251984ee849ffd7ba35d4e9 410 Gene3D G3DSA:1.20.1250.20 192 381 7.3E-24 T 23-04-2016 RD1_RS14390 9cad2e164c6b20786d020297a81bf9d1 316 PIRSF PIRSF036979 14 313 4.5E-96 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS14390 9cad2e164c6b20786d020297a81bf9d1 316 PRINTS PR00116 Arginase signature 235 264 4.34E-13 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS14390 9cad2e164c6b20786d020297a81bf9d1 316 PRINTS PR00116 Arginase signature 121 136 4.34E-13 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS14390 9cad2e164c6b20786d020297a81bf9d1 316 Gene3D G3DSA:3.40.800.10 7 310 1.1E-115 T 23-04-2016 IPR023696 Ureohydrolase domain RD1_RS14390 9cad2e164c6b20786d020297a81bf9d1 316 ProSitePatterns PS01053 Arginase family signature. 238 259 - T 23-04-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Reactome: REACT_13 RD1_RS14390 9cad2e164c6b20786d020297a81bf9d1 316 PANTHER PTHR11358:SF27 5 316 4.2E-154 T 23-04-2016 RD1_RS14390 9cad2e164c6b20786d020297a81bf9d1 316 Pfam PF00491 Arginase family 35 307 7.4E-87 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS14390 9cad2e164c6b20786d020297a81bf9d1 316 TIGRFAM TIGR01230 agmatinase: agmatinase 35 308 3.8E-62 T 23-04-2016 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|UniPathway: UPA00534 RD1_RS14390 9cad2e164c6b20786d020297a81bf9d1 316 SUPERFAMILY SSF52768 15 310 2.52E-98 T 23-04-2016 RD1_RS14390 9cad2e164c6b20786d020297a81bf9d1 316 PANTHER PTHR11358 5 316 4.2E-154 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RD1_RS17615 862471d5fafc3e7f7b88982f903ad691 310 SUPERFAMILY SSF53795 110 187 5.95E-12 T 23-04-2016 RD1_RS17615 862471d5fafc3e7f7b88982f903ad691 310 Gene3D G3DSA:3.40.50.300 108 249 1.1E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS04215 ca2407b5cda24e9c14705cb7d53b3b95 337 PANTHER PTHR30006 1 333 2.5E-114 T 23-04-2016 RD1_RS04215 ca2407b5cda24e9c14705cb7d53b3b95 337 Gene3D G3DSA:3.40.190.10 7 120 9.8E-27 T 23-04-2016 RD1_RS04215 ca2407b5cda24e9c14705cb7d53b3b95 337 Gene3D G3DSA:3.40.190.10 269 316 9.8E-27 T 23-04-2016 RD1_RS04215 ca2407b5cda24e9c14705cb7d53b3b95 337 Gene3D G3DSA:3.40.190.10 124 268 4.5E-51 T 23-04-2016 RD1_RS04215 ca2407b5cda24e9c14705cb7d53b3b95 337 PIRSF PIRSF002825 1 337 4.7E-85 T 23-04-2016 IPR026045 Ferric binding protein RD1_RS04215 ca2407b5cda24e9c14705cb7d53b3b95 337 Pfam PF13343 Bacterial extracellular solute-binding protein 72 300 7.0E-22 T 23-04-2016 RD1_RS04215 ca2407b5cda24e9c14705cb7d53b3b95 337 SUPERFAMILY SSF53850 24 330 2.65E-77 T 23-04-2016 RD1_RS04215 ca2407b5cda24e9c14705cb7d53b3b95 337 PANTHER PTHR30006:SF4 1 333 2.5E-114 T 23-04-2016 RD1_RS19325 7407d2121e7b958ce8fcabd6cb49aeb8 145 SUPERFAMILY SSF160719 26 134 4.84E-31 T 23-04-2016 RD1_RS19325 7407d2121e7b958ce8fcabd6cb49aeb8 145 Pfam PF04965 Gene 25-like lysozyme 30 120 5.6E-24 T 23-04-2016 IPR007048 GpW/Gp25/anti-adapter protein IraD RD1_RS19325 7407d2121e7b958ce8fcabd6cb49aeb8 145 PANTHER PTHR35862 8 133 4.8E-28 T 23-04-2016 RD1_RS19325 7407d2121e7b958ce8fcabd6cb49aeb8 145 PANTHER PTHR35862:SF2 8 133 4.8E-28 T 23-04-2016 RD1_RS19325 7407d2121e7b958ce8fcabd6cb49aeb8 145 Gene3D G3DSA:3.10.450.40 5 134 2.5E-43 T 23-04-2016 RD1_RS12555 7833b0b5428823a105f0604c394d651f 297 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 40 64 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RD1_RS12555 7833b0b5428823a105f0604c394d651f 297 PANTHER PTHR10584 3 295 2.0E-26 T 23-04-2016 RD1_RS12555 7833b0b5428823a105f0604c394d651f 297 PANTHER PTHR10584:SF188 3 295 2.0E-26 T 23-04-2016 RD1_RS12555 7833b0b5428823a105f0604c394d651f 297 SUPERFAMILY SSF53613 2 292 3.27E-44 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS12555 7833b0b5428823a105f0604c394d651f 297 Gene3D G3DSA:3.40.1190.20 2 294 5.8E-47 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS12555 7833b0b5428823a105f0604c394d651f 297 Pfam PF00294 pfkB family carbohydrate kinase 5 292 1.9E-29 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RD1_RS09650 78a7d7cbd535b06442ffb19fe9c1a231 290 SUPERFAMILY SSF53335 43 284 7.47E-38 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS09650 78a7d7cbd535b06442ffb19fe9c1a231 290 PANTHER PTHR18895 3 290 4.6E-49 T 23-04-2016 RD1_RS09650 78a7d7cbd535b06442ffb19fe9c1a231 290 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 64 287 5.6E-55 T 23-04-2016 RD1_RS09650 78a7d7cbd535b06442ffb19fe9c1a231 290 PANTHER PTHR18895:SF3 3 290 4.6E-49 T 23-04-2016 RD1_RS09650 78a7d7cbd535b06442ffb19fe9c1a231 290 Gene3D G3DSA:3.40.50.150 116 283 4.9E-33 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS09650 78a7d7cbd535b06442ffb19fe9c1a231 290 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 4 288 26.957 T 23-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 RD1_RS05025 f6e99e7d0a08028983d9f7e37467d9b8 415 PANTHER PTHR12526 184 394 1.1E-39 T 23-04-2016 RD1_RS05025 f6e99e7d0a08028983d9f7e37467d9b8 415 SUPERFAMILY SSF53756 21 397 2.77E-49 T 23-04-2016 RD1_RS05025 f6e99e7d0a08028983d9f7e37467d9b8 415 Pfam PF00534 Glycosyl transferases group 1 221 389 7.4E-27 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RD1_RS05025 f6e99e7d0a08028983d9f7e37467d9b8 415 Gene3D G3DSA:3.40.50.2000 200 385 1.1E-17 T 23-04-2016 RD1_RS11590 d2dc67feb012163fde97fd39e9195ea1 205 SUPERFAMILY SSF52540 33 135 3.66E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11590 d2dc67feb012163fde97fd39e9195ea1 205 Gene3D G3DSA:3.40.50.300 32 135 2.3E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18020 f53a1699702074b346d365f574066dcc 401 PANTHER PTHR23504:SF18 2 394 6.9E-142 T 23-04-2016 RD1_RS18020 f53a1699702074b346d365f574066dcc 401 PRINTS PR01035 Tetracycline resistance protein signature 220 237 1.0E-63 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RD1_RS18020 f53a1699702074b346d365f574066dcc 401 PRINTS PR01035 Tetracycline resistance protein signature 277 298 1.0E-63 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RD1_RS18020 f53a1699702074b346d365f574066dcc 401 PRINTS PR01035 Tetracycline resistance protein signature 302 322 1.0E-63 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RD1_RS18020 f53a1699702074b346d365f574066dcc 401 PRINTS PR01035 Tetracycline resistance protein signature 337 360 1.0E-63 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RD1_RS18020 f53a1699702074b346d365f574066dcc 401 PRINTS PR01035 Tetracycline resistance protein signature 249 269 1.0E-63 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RD1_RS18020 f53a1699702074b346d365f574066dcc 401 PRINTS PR01035 Tetracycline resistance protein signature 133 155 1.0E-63 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RD1_RS18020 f53a1699702074b346d365f574066dcc 401 PRINTS PR01035 Tetracycline resistance protein signature 161 181 1.0E-63 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RD1_RS18020 f53a1699702074b346d365f574066dcc 401 PRINTS PR01035 Tetracycline resistance protein signature 76 100 1.0E-63 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RD1_RS18020 f53a1699702074b346d365f574066dcc 401 PRINTS PR01035 Tetracycline resistance protein signature 14 30 1.0E-63 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RD1_RS18020 f53a1699702074b346d365f574066dcc 401 PRINTS PR01035 Tetracycline resistance protein signature 103 124 1.0E-63 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RD1_RS18020 f53a1699702074b346d365f574066dcc 401 PANTHER PTHR23504 2 394 6.9E-142 T 23-04-2016 RD1_RS18020 f53a1699702074b346d365f574066dcc 401 Gene3D G3DSA:1.20.1250.20 3 191 1.3E-40 T 23-04-2016 RD1_RS18020 f53a1699702074b346d365f574066dcc 401 ProSitePatterns PS00216 Sugar transport proteins signature 1. 63 79 - T 23-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RD1_RS18020 f53a1699702074b346d365f574066dcc 401 Gene3D G3DSA:1.20.1250.20 216 385 5.9E-11 T 23-04-2016 RD1_RS18020 f53a1699702074b346d365f574066dcc 401 SUPERFAMILY SSF103473 3 392 3.01E-57 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS18020 f53a1699702074b346d365f574066dcc 401 Pfam PF07690 Major Facilitator Superfamily 9 353 7.2E-42 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS06240 d5b7f5f7d62a97bea5297fab563d7817 150 Pfam PF00075 RNase H 5 145 1.1E-48 T 23-04-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 RD1_RS06240 d5b7f5f7d62a97bea5297fab563d7817 150 Hamap MF_00042 Ribonuclease H [rnhA]. 1 150 32.298 T 23-04-2016 IPR022892 Ribonuclease H GO:0004523 RD1_RS06240 d5b7f5f7d62a97bea5297fab563d7817 150 SUPERFAMILY SSF53098 2 145 2.02E-53 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS06240 d5b7f5f7d62a97bea5297fab563d7817 150 PANTHER PTHR10642 4 144 3.5E-49 T 23-04-2016 RD1_RS06240 d5b7f5f7d62a97bea5297fab563d7817 150 Gene3D G3DSA:3.30.420.10 4 146 3.6E-57 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS17180 548fd66bbb735dadb04bf62af451f904 260 Pfam PF13557 Putative MetA-pathway of phenol degradation 74 256 1.4E-41 T 23-04-2016 IPR025737 MetA-pathway of phenol degradation, putative RD1_RS12000 ff4313dcb67b35e51ddbc7c8d0f99ffc 150 SUPERFAMILY SSF82649 3 145 1.07E-37 T 23-04-2016 RD1_RS12000 ff4313dcb67b35e51ddbc7c8d0f99ffc 150 Gene3D G3DSA:3.90.1010.10 10 146 2.7E-13 T 23-04-2016 RD1_RS05505 ef40f325d7472e1ec1961fad16c53533 227 Gene3D G3DSA:3.40.30.10 13 93 1.2E-16 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS05505 ef40f325d7472e1ec1961fad16c53533 227 PANTHER PTHR11260 12 199 2.5E-28 T 23-04-2016 RD1_RS05505 ef40f325d7472e1ec1961fad16c53533 227 SUPERFAMILY SSF47616 82 202 6.25E-10 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS05505 ef40f325d7472e1ec1961fad16c53533 227 SUPERFAMILY SSF52833 10 93 2.71E-14 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS05505 ef40f325d7472e1ec1961fad16c53533 227 Gene3D G3DSA:1.20.1050.10 94 205 4.6E-32 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS05505 ef40f325d7472e1ec1961fad16c53533 227 PANTHER PTHR11260:SF144 12 199 2.5E-28 T 23-04-2016 RD1_RS05505 ef40f325d7472e1ec1961fad16c53533 227 Pfam PF13409 Glutathione S-transferase, N-terminal domain 12 78 1.2E-7 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RD1_RS09830 07e7323a61ba53ff92ce65ba4415d87c 208 Gene3D G3DSA:3.40.810.20 3 207 1.6E-87 T 23-04-2016 RD1_RS09830 07e7323a61ba53ff92ce65ba4415d87c 208 PANTHER PTHR13707 3 208 1.2E-121 T 23-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RD1_RS09830 07e7323a61ba53ff92ce65ba4415d87c 208 Pfam PF01144 Coenzyme A transferase 7 184 3.6E-38 T 23-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RD1_RS09830 07e7323a61ba53ff92ce65ba4415d87c 208 SMART SM00882 6 202 9.8E-75 T 23-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RD1_RS09830 07e7323a61ba53ff92ce65ba4415d87c 208 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 207 4.5E-99 T 23-04-2016 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 RD1_RS09830 07e7323a61ba53ff92ce65ba4415d87c 208 SUPERFAMILY SSF100950 3 206 3.45E-69 T 23-04-2016 RD1_RS06795 fd9e2404b8281be6a1dd601360f21973 227 SUPERFAMILY SSF46785 5 71 6.04E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS06795 fd9e2404b8281be6a1dd601360f21973 227 Gene3D G3DSA:1.10.10.10 3 51 3.2E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07225 982b4bacc2ac6bb9d48e8733ccb0b1e0 656 Pfam PF12801 4Fe-4S binding domain 554 600 1.3E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS07225 982b4bacc2ac6bb9d48e8733ccb0b1e0 656 Pfam PF12801 4Fe-4S binding domain 454 499 2.7E-12 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RD1_RS07225 982b4bacc2ac6bb9d48e8733ccb0b1e0 656 SMART SM00900 78 164 2.7E-7 T 23-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 RD1_RS07225 982b4bacc2ac6bb9d48e8733ccb0b1e0 656 PIRSF PIRSF036354 4 656 4.8E-174 T 23-04-2016 IPR011399 Nitrous oxide reductase expression regulator NosR GO:0003677|GO:0016020|GO:0045893 RD1_RS07225 982b4bacc2ac6bb9d48e8733ccb0b1e0 656 PANTHER PTHR30224 76 637 1.2E-124 T 23-04-2016 RD1_RS07225 982b4bacc2ac6bb9d48e8733ccb0b1e0 656 Pfam PF04205 FMN-binding domain 78 157 2.4E-4 T 23-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 RD1_RS07225 982b4bacc2ac6bb9d48e8733ccb0b1e0 656 SUPERFAMILY SSF54862 569 637 7.86E-12 T 23-04-2016 RD1_RS07225 982b4bacc2ac6bb9d48e8733ccb0b1e0 656 SUPERFAMILY SSF54862 474 514 7.86E-12 T 23-04-2016 RD1_RS07225 982b4bacc2ac6bb9d48e8733ccb0b1e0 656 PANTHER PTHR30224:SF4 76 637 1.2E-124 T 23-04-2016 RD1_RS03390 2fab34e820271714a9053ec1eab7ea79 180 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 22 169 7.6E-10 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS08025 57f2e59629364017208fafa65c2b055b 217 PANTHER PTHR11579:SF0 1 170 6.9E-24 T 23-04-2016 RD1_RS08025 57f2e59629364017208fafa65c2b055b 217 PANTHER PTHR11579 1 170 6.9E-24 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RD1_RS08025 57f2e59629364017208fafa65c2b055b 217 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 23 173 8.9E-33 T 23-04-2016 RD1_RS08025 57f2e59629364017208fafa65c2b055b 217 SUPERFAMILY SSF53335 1 177 1.84E-35 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS08025 57f2e59629364017208fafa65c2b055b 217 Gene3D G3DSA:3.40.50.150 11 210 1.7E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS17095 4f8c25b77707c9e37d9fe5419aafb951 696 Pfam PF00005 ABC transporter 476 625 2.1E-14 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS17095 4f8c25b77707c9e37d9fe5419aafb951 696 PANTHER PTHR24221 137 674 7.8E-59 T 23-04-2016 RD1_RS17095 4f8c25b77707c9e37d9fe5419aafb951 696 SUPERFAMILY SSF90123 133 440 1.02E-43 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS17095 4f8c25b77707c9e37d9fe5419aafb951 696 Gene3D G3DSA:1.20.1560.10 132 437 3.8E-40 T 23-04-2016 RD1_RS17095 4f8c25b77707c9e37d9fe5419aafb951 696 Pfam PF00664 ABC transporter transmembrane region 146 406 7.0E-21 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS17095 4f8c25b77707c9e37d9fe5419aafb951 696 Gene3D G3DSA:3.40.50.300 458 676 2.5E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17095 4f8c25b77707c9e37d9fe5419aafb951 696 SUPERFAMILY SSF52540 453 675 1.36E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17095 4f8c25b77707c9e37d9fe5419aafb951 696 SMART SM00382 485 672 4.0E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS17095 4f8c25b77707c9e37d9fe5419aafb951 696 Gene3D G3DSA:3.90.70.10 16 113 2.4E-4 T 23-04-2016 RD1_RS03170 4466119d2e05791c0cc2f992f33cd663 366 PANTHER PTHR13794 1 360 1.0E-79 T 23-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 RD1_RS03170 4466119d2e05791c0cc2f992f33cd663 366 SMART SM00922 147 244 2.4E-22 T 23-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RD1_RS03170 4466119d2e05791c0cc2f992f33cd663 366 Gene3D G3DSA:3.30.390.10 1 130 9.0E-39 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RD1_RS03170 4466119d2e05791c0cc2f992f33cd663 366 SUPERFAMILY SSF51604 117 361 1.7E-62 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS03170 4466119d2e05791c0cc2f992f33cd663 366 Pfam PF13378 Enolase C-terminal domain-like 154 354 3.5E-51 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS03170 4466119d2e05791c0cc2f992f33cd663 366 Gene3D G3DSA:3.20.20.120 131 353 1.9E-62 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS03170 4466119d2e05791c0cc2f992f33cd663 366 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 26 128 2.0E-15 T 23-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RD1_RS03170 4466119d2e05791c0cc2f992f33cd663 366 SUPERFAMILY SSF54826 3 129 7.66E-33 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RD1_RS15715 39d920f9ef5824026b859d41e2dddcd3 485 SUPERFAMILY SSF111369 193 346 3.92E-11 T 23-04-2016 RD1_RS15715 39d920f9ef5824026b859d41e2dddcd3 485 Pfam PF13437 HlyD family secretion protein 232 323 6.2E-10 T 23-04-2016 RD1_RS15715 39d920f9ef5824026b859d41e2dddcd3 485 PANTHER PTHR30469 141 430 4.6E-28 T 23-04-2016 RD1_RS15715 39d920f9ef5824026b859d41e2dddcd3 485 PANTHER PTHR30469 3 119 4.6E-28 T 23-04-2016 RD1_RS15715 39d920f9ef5824026b859d41e2dddcd3 485 Gene3D G3DSA:2.40.50.100 229 261 9.7E-11 T 23-04-2016 RD1_RS15715 39d920f9ef5824026b859d41e2dddcd3 485 Gene3D G3DSA:2.40.50.100 78 112 9.7E-11 T 23-04-2016 RD1_RS15715 39d920f9ef5824026b859d41e2dddcd3 485 SUPERFAMILY SSF111369 66 159 3.79E-9 T 23-04-2016 RD1_RS02505 33181fa415a5f2b32ecc63c4eaa63856 306 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 293 2.4E-37 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS02505 33181fa415a5f2b32ecc63c4eaa63856 306 PANTHER PTHR11795 281 304 1.6E-103 T 23-04-2016 RD1_RS02505 33181fa415a5f2b32ecc63c4eaa63856 306 PANTHER PTHR11795 1 264 1.6E-103 T 23-04-2016 RD1_RS02505 33181fa415a5f2b32ecc63c4eaa63856 306 PANTHER PTHR11795:SF404 281 304 1.6E-103 T 23-04-2016 RD1_RS02505 33181fa415a5f2b32ecc63c4eaa63856 306 PANTHER PTHR11795:SF404 1 264 1.6E-103 T 23-04-2016 RD1_RS00770 08e64a51679c2bf8ddb46ff640fd5f83 444 SUPERFAMILY SSF51905 38 267 9.88E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00770 08e64a51679c2bf8ddb46ff640fd5f83 444 SUPERFAMILY SSF51905 362 433 9.88E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00770 08e64a51679c2bf8ddb46ff640fd5f83 444 PANTHER PTHR13847 1 404 2.6E-73 T 23-04-2016 RD1_RS00770 08e64a51679c2bf8ddb46ff640fd5f83 444 PANTHER PTHR13847:SF196 1 404 2.6E-73 T 23-04-2016 RD1_RS00770 08e64a51679c2bf8ddb46ff640fd5f83 444 Gene3D G3DSA:3.50.50.60 362 408 2.7E-49 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00770 08e64a51679c2bf8ddb46ff640fd5f83 444 Gene3D G3DSA:3.50.50.60 30 129 2.7E-49 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00770 08e64a51679c2bf8ddb46ff640fd5f83 444 Gene3D G3DSA:3.50.50.60 185 266 2.7E-49 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00770 08e64a51679c2bf8ddb46ff640fd5f83 444 Pfam PF01266 FAD dependent oxidoreductase 39 401 1.9E-48 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS13825 bf3e21385676cff5588bdcaac0930800 168 PIRSF PIRSF001467 7 168 1.7E-25 T 23-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 RD1_RS13825 bf3e21385676cff5588bdcaac0930800 168 PANTHER PTHR11071 18 147 1.5E-33 T 23-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 RD1_RS13825 bf3e21385676cff5588bdcaac0930800 168 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 45 62 - T 23-04-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 RD1_RS13825 bf3e21385676cff5588bdcaac0930800 168 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 13 163 5.6E-44 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RD1_RS13825 bf3e21385676cff5588bdcaac0930800 168 SUPERFAMILY SSF50891 8 166 8.47E-45 T 23-04-2016 IPR029000 Cyclophilin-like domain RD1_RS13825 bf3e21385676cff5588bdcaac0930800 168 Gene3D G3DSA:2.40.100.10 6 166 1.9E-42 T 23-04-2016 IPR029000 Cyclophilin-like domain RD1_RS13825 bf3e21385676cff5588bdcaac0930800 168 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 8.4E-12 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RD1_RS13825 bf3e21385676cff5588bdcaac0930800 168 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 129 144 8.4E-12 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RD1_RS13825 bf3e21385676cff5588bdcaac0930800 168 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 128 8.4E-12 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RD1_RS13825 bf3e21385676cff5588bdcaac0930800 168 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 50 62 8.4E-12 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RD1_RS00650 a6ad9a72f4a6126993c8930b3fc11ad7 260 Pfam PF02310 B12 binding domain 137 249 3.8E-9 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS00650 a6ad9a72f4a6126993c8930b3fc11ad7 260 SUPERFAMILY SSF52242 132 237 1.0E-6 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS16640 336604972e7a103852c05fd6e001a6eb 513 SUPERFAMILY SSF53067 254 500 8.94E-54 T 23-04-2016 RD1_RS16640 336604972e7a103852c05fd6e001a6eb 513 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 364 384 - T 23-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RD1_RS16640 336604972e7a103852c05fd6e001a6eb 513 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 261 450 1.3E-32 T 23-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RD1_RS16640 336604972e7a103852c05fd6e001a6eb 513 PANTHER PTHR10196 8 510 9.3E-118 T 23-04-2016 RD1_RS16640 336604972e7a103852c05fd6e001a6eb 513 PIRSF PIRSF000538 8 507 4.9E-122 T 23-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RD1_RS16640 336604972e7a103852c05fd6e001a6eb 513 Gene3D G3DSA:3.30.420.40 255 501 2.6E-47 T 23-04-2016 RD1_RS16640 336604972e7a103852c05fd6e001a6eb 513 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 11 252 1.3E-56 T 23-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RD1_RS16640 336604972e7a103852c05fd6e001a6eb 513 Gene3D G3DSA:3.30.420.40 8 253 1.4E-62 T 23-04-2016 RD1_RS16640 336604972e7a103852c05fd6e001a6eb 513 SUPERFAMILY SSF53067 10 254 3.63E-64 T 23-04-2016 RD1_RS19105 42578c5bf615c4ea9b12be08d238a255 171 PANTHER PTHR12083 3 159 3.0E-15 T 23-04-2016 RD1_RS19105 42578c5bf615c4ea9b12be08d238a255 171 SUPERFAMILY SSF52540 5 128 6.05E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS19105 42578c5bf615c4ea9b12be08d238a255 171 Pfam PF13671 AAA domain 8 150 2.3E-25 T 23-04-2016 RD1_RS19105 42578c5bf615c4ea9b12be08d238a255 171 Gene3D G3DSA:3.40.50.300 6 154 4.2E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 24 428 2.2E-126 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 Hamap MF_01465 Protein translocase subunit SecY [secY]. 14 433 28.935 T 23-04-2016 IPR026593 Protein translocase subunit SecY RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 ProSitePatterns PS00755 Protein secY signature 1. 80 99 - T 23-04-2016 IPR030659 SecY conserved site RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 PIRSF PIRSF004557 4 441 3.5E-123 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 PANTHER PTHR10906:SF2 22 447 9.2E-197 T 23-04-2016 RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 PANTHER PTHR10906 22 447 9.2E-197 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 154 179 8.1E-95 T 23-04-2016 RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 314 336 8.1E-95 T 23-04-2016 RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 272 291 8.1E-95 T 23-04-2016 RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 27 45 8.1E-95 T 23-04-2016 RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 370 388 8.1E-95 T 23-04-2016 RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 79 99 8.1E-95 T 23-04-2016 RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 120 143 8.1E-95 T 23-04-2016 RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 402 420 8.1E-95 T 23-04-2016 RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 180 203 8.1E-95 T 23-04-2016 RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 Pfam PF00344 SecY translocase 81 417 2.8E-113 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 SUPERFAMILY SSF103491 14 424 1.44E-128 T 23-04-2016 IPR023201 SecY subunit domain RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 Gene3D G3DSA:1.10.3370.10 18 437 1.4E-157 T 23-04-2016 IPR023201 SecY subunit domain RD1_RS06630 09553352326ed5aab4e348967ccddc60 454 ProSitePatterns PS00756 Protein secY signature 2. 173 190 - T 23-04-2016 IPR030659 SecY conserved site RD1_RS07675 86a763cf90466d16ed7b49b11294441c 650 PANTHER PTHR30441 3 606 5.0E-26 T 23-04-2016 RD1_RS07675 86a763cf90466d16ed7b49b11294441c 650 Pfam PF13502 AsmA-like C-terminal region 399 573 1.1E-20 T 23-04-2016 IPR032712 AsmA-like, C-terminal RD1_RS07675 86a763cf90466d16ed7b49b11294441c 650 Pfam PF05170 AsmA family 7 207 5.8E-21 T 23-04-2016 IPR007844 AsmA RD1_RS10665 abc0c1f89ef5dd81b65f5ad0abeeba60 429 PANTHER PTHR33362 1 424 3.4E-145 T 23-04-2016 RD1_RS10665 abc0c1f89ef5dd81b65f5ad0abeeba60 429 PANTHER PTHR33362:SF2 1 424 3.4E-145 T 23-04-2016 RD1_RS10665 abc0c1f89ef5dd81b65f5ad0abeeba60 429 PIRSF PIRSF006066 1 428 3.2E-147 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS10665 abc0c1f89ef5dd81b65f5ad0abeeba60 429 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 16 422 9.0E-131 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS10665 abc0c1f89ef5dd81b65f5ad0abeeba60 429 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 417 2.3E-116 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS04620 1803593038772942c4c507b94c96e7b2 321 Gene3D G3DSA:3.30.390.10 1 98 2.4E-35 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RD1_RS04620 1803593038772942c4c507b94c96e7b2 321 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 12 107 3.8E-13 T 23-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RD1_RS04620 1803593038772942c4c507b94c96e7b2 321 PANTHER PTHR13794:SF60 1 304 2.5E-91 T 23-04-2016 RD1_RS04620 1803593038772942c4c507b94c96e7b2 321 SUPERFAMILY SSF51604 115 321 1.44E-52 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS04620 1803593038772942c4c507b94c96e7b2 321 SUPERFAMILY SSF54826 2 107 2.65E-28 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RD1_RS04620 1803593038772942c4c507b94c96e7b2 321 Pfam PF13378 Enolase C-terminal domain-like 137 315 3.5E-24 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS04620 1803593038772942c4c507b94c96e7b2 321 Gene3D G3DSA:3.20.20.120 116 312 3.6E-53 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS04620 1803593038772942c4c507b94c96e7b2 321 SMART SM00922 125 216 1.1E-15 T 23-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RD1_RS04620 1803593038772942c4c507b94c96e7b2 321 PANTHER PTHR13794 1 304 2.5E-91 T 23-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 RD1_RS07490 3e1decc91217477a1975dc8cf7e94816 67 Pfam PF08410 Domain of unknown function (DUF1737) 2 53 4.2E-26 T 23-04-2016 IPR013619 Domain of unknown function DUF1737 RD1_RS10490 24a8a56b62437e76f508e6be5f1719e1 58 Pfam PF13770 Domain of unknown function (DUF4169) 3 56 5.5E-20 T 23-04-2016 IPR025227 Protein of unknown function DUF4169 RD1_RS13455 02562f20dff50c9dbef76f45c4712237 503 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 17 436 8.8E-127 T 23-04-2016 IPR002823 Protein of unknown function DUF112, transmembrane RD1_RS13455 02562f20dff50c9dbef76f45c4712237 503 PANTHER PTHR35342:SF4 1 501 1.2E-140 T 23-04-2016 RD1_RS13455 02562f20dff50c9dbef76f45c4712237 503 PANTHER PTHR35342 1 501 1.2E-140 T 23-04-2016 RD1_RS12255 3f1d244349d58c038aa7546951059ce6 200 PANTHER PTHR30086:SF12 1 168 1.9E-26 T 23-04-2016 RD1_RS12255 3f1d244349d58c038aa7546951059ce6 200 Pfam PF01810 LysE type translocator 18 197 2.2E-17 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS12255 3f1d244349d58c038aa7546951059ce6 200 PANTHER PTHR30086 1 168 1.9E-26 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS19465 e9cdc3d32ff705680bbab6b49d5bff1b 309 PANTHER PTHR11907:SF0 113 274 5.8E-32 T 23-04-2016 RD1_RS19465 e9cdc3d32ff705680bbab6b49d5bff1b 309 PANTHER PTHR11907:SF0 1 53 5.8E-32 T 23-04-2016 RD1_RS19465 e9cdc3d32ff705680bbab6b49d5bff1b 309 PANTHER PTHR11907 113 274 5.8E-32 T 23-04-2016 RD1_RS19465 e9cdc3d32ff705680bbab6b49d5bff1b 309 PANTHER PTHR11907 1 53 5.8E-32 T 23-04-2016 RD1_RS19465 e9cdc3d32ff705680bbab6b49d5bff1b 309 Pfam PF13522 Glutamine amidotransferase domain 140 270 3.5E-20 T 23-04-2016 RD1_RS19465 e9cdc3d32ff705680bbab6b49d5bff1b 309 SUPERFAMILY SSF56235 117 300 2.04E-47 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS19465 e9cdc3d32ff705680bbab6b49d5bff1b 309 SUPERFAMILY SSF56235 2 45 2.04E-47 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS19465 e9cdc3d32ff705680bbab6b49d5bff1b 309 Gene3D G3DSA:3.60.20.10 2 44 1.5E-57 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS19465 e9cdc3d32ff705680bbab6b49d5bff1b 309 Gene3D G3DSA:3.60.20.10 116 303 1.5E-57 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS09490 854e28a50368c9e7d030c9436e4da4b5 331 PANTHER PTHR11091 5 325 3.0E-59 T 23-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS09490 854e28a50368c9e7d030c9436e4da4b5 331 Gene3D G3DSA:1.10.1530.10 4 72 6.6E-9 T 23-04-2016 RD1_RS09490 854e28a50368c9e7d030c9436e4da4b5 331 SUPERFAMILY SSF89733 2 325 4.32E-89 T 23-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS09490 854e28a50368c9e7d030c9436e4da4b5 331 PANTHER PTHR11091:SF0 5 325 3.0E-59 T 23-04-2016 RD1_RS09490 854e28a50368c9e7d030c9436e4da4b5 331 Gene3D G3DSA:3.30.1370.60 73 275 3.5E-67 T 23-04-2016 RD1_RS09490 854e28a50368c9e7d030c9436e4da4b5 331 Pfam PF02615 Malate/L-lactate dehydrogenase 5 318 1.0E-81 T 23-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 RD1_RS07215 78438e6d50131bf5fb157f98267e01dc 150 Pfam PF00034 Cytochrome c 51 134 7.3E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07215 78438e6d50131bf5fb157f98267e01dc 150 Gene3D G3DSA:1.10.760.10 28 133 2.5E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07215 78438e6d50131bf5fb157f98267e01dc 150 SUPERFAMILY SSF46626 35 149 1.0E-19 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS05685 a10cce29d576e40baf4f7263adb8fadd 175 PANTHER PTHR10612 5 173 3.1E-38 T 23-04-2016 RD1_RS05685 a10cce29d576e40baf4f7263adb8fadd 175 ProSitePatterns PS00213 Lipocalin signature. 32 45 - T 23-04-2016 IPR022272 Lipocalin family conserved site RD1_RS05685 a10cce29d576e40baf4f7263adb8fadd 175 SUPERFAMILY SSF50814 8 171 4.52E-36 T 23-04-2016 IPR011038 Calycin-like RD1_RS05685 a10cce29d576e40baf4f7263adb8fadd 175 Pfam PF08212 Lipocalin-like domain 34 171 1.8E-40 T 23-04-2016 IPR000566 Lipocalin/cytosolic fatty-acid binding domain RD1_RS05685 a10cce29d576e40baf4f7263adb8fadd 175 PRINTS PR01171 Bacterial lipocalin signature 120 128 2.2E-8 T 23-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 RD1_RS05685 a10cce29d576e40baf4f7263adb8fadd 175 PRINTS PR01171 Bacterial lipocalin signature 33 47 2.2E-8 T 23-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 RD1_RS05685 a10cce29d576e40baf4f7263adb8fadd 175 PRINTS PR01171 Bacterial lipocalin signature 135 146 2.2E-8 T 23-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 RD1_RS05685 a10cce29d576e40baf4f7263adb8fadd 175 PRINTS PR01171 Bacterial lipocalin signature 50 66 2.2E-8 T 23-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 RD1_RS05685 a10cce29d576e40baf4f7263adb8fadd 175 Gene3D G3DSA:2.40.128.20 6 173 9.2E-49 T 23-04-2016 IPR012674 Calycin RD1_RS05685 a10cce29d576e40baf4f7263adb8fadd 175 PIRSF PIRSF036893 1 175 3.0E-47 T 23-04-2016 IPR022271 Lipocalin, ApoD type RD1_RS13290 6ada24729c1fa5998a4ff46ff6ccc7f2 304 SUPERFAMILY SSF52540 20 204 3.48E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13290 6ada24729c1fa5998a4ff46ff6ccc7f2 304 Gene3D G3DSA:3.40.50.300 20 190 1.6E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13290 6ada24729c1fa5998a4ff46ff6ccc7f2 304 Pfam PF00350 Dynamin family 25 170 3.8E-8 T 23-04-2016 IPR022812 Dynamin superfamily RD1_RS00365 2cf22f443d7154b01b59c1471ba309cd 250 Gene3D G3DSA:3.60.15.10 29 240 1.4E-28 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS00365 2cf22f443d7154b01b59c1471ba309cd 250 PANTHER PTHR23200 14 236 4.3E-19 T 23-04-2016 RD1_RS00365 2cf22f443d7154b01b59c1471ba309cd 250 Pfam PF00753 Metallo-beta-lactamase superfamily 34 234 1.1E-17 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS00365 2cf22f443d7154b01b59c1471ba309cd 250 SUPERFAMILY SSF56281 14 237 1.15E-29 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS00365 2cf22f443d7154b01b59c1471ba309cd 250 SMART SM00849 30 234 2.2E-13 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS13520 fd063726a188aae07d5edcd9cc9f8718 281 PANTHER PTHR32243 6 279 1.9E-109 T 23-04-2016 RD1_RS13520 fd063726a188aae07d5edcd9cc9f8718 281 PANTHER PTHR32243:SF31 6 279 1.9E-109 T 23-04-2016 IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE GO:0001407|GO:0005887|GO:0015794|GO:0055052 RD1_RS13520 fd063726a188aae07d5edcd9cc9f8718 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 276 8.0E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13520 fd063726a188aae07d5edcd9cc9f8718 281 Gene3D G3DSA:1.10.3720.10 7 270 9.4E-46 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13520 fd063726a188aae07d5edcd9cc9f8718 281 SUPERFAMILY SSF161098 6 278 3.53E-53 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18790 26d09d1fcf06345b3063f6d3e5670d4c 313 PANTHER PTHR34595 1 309 1.2E-75 T 23-04-2016 RD1_RS18790 26d09d1fcf06345b3063f6d3e5670d4c 313 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 309 2.2E-84 T 23-04-2016 IPR007296 Domain of unknown function DUF403 RD1_RS05960 6e0ba13cb5f247241998309c1d28de54 163 Pfam PF09933 Predicted small integral membrane protein (DUF2165) 7 161 4.8E-31 T 23-04-2016 IPR018681 Protein of unknown function DUF2165, transmembrane RD1_RS10660 4df46a6b14bf2d97076af3ee79534b5a 196 PANTHER PTHR35011 20 196 3.8E-12 T 23-04-2016 RD1_RS10660 4df46a6b14bf2d97076af3ee79534b5a 196 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 33 174 2.2E-21 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS01560 08a1acc9f4bd9653ed9212784e697ebe 380 SUPERFAMILY SSF51261 261 373 4.34E-6 T 23-04-2016 IPR011055 Duplicated hybrid motif RD1_RS01560 08a1acc9f4bd9653ed9212784e697ebe 380 Gene3D G3DSA:1.10.3170.10 130 217 5.7E-4 T 23-04-2016 RD1_RS01560 08a1acc9f4bd9653ed9212784e697ebe 380 Gene3D G3DSA:2.70.70.10 236 375 2.3E-10 T 23-04-2016 RD1_RS07995 fbfdbd0d89ba7205352c2b7606164e3f 170 Pfam PF11736 Protein of unknown function (DUF3299) 33 167 1.3E-36 T 23-04-2016 IPR021727 Protein of unknown function DUF3299 RD1_RS06350 3ad78e95d8d622955ae74a7f7136c21f 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 35 92 9.7E-10 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS06350 3ad78e95d8d622955ae74a7f7136c21f 307 Gene3D G3DSA:1.10.10.10 36 106 1.4E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS06350 3ad78e95d8d622955ae74a7f7136c21f 307 SUPERFAMILY SSF46785 35 109 7.21E-13 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS14965 75579be2d3e1ff5f1e1ed5ceb798e237 116 Pfam PF09585 Conserved hypothetical protein (Lin0512_fam) 4 107 2.2E-33 T 23-04-2016 IPR011719 Conserved hypothetical protein CHP02058 RD1_RS14965 75579be2d3e1ff5f1e1ed5ceb798e237 116 PANTHER PTHR34784 1 109 1.8E-17 T 23-04-2016 RD1_RS14965 75579be2d3e1ff5f1e1ed5ceb798e237 116 Gene3D G3DSA:3.30.1330.20 1 111 7.5E-35 T 23-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain RD1_RS01945 682d11cfe8e65e291fa16605081fd078 406 Hamap MF_00005 Argininosuccinate synthase [argG]. 4 402 53.055 T 23-04-2016 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS01945 682d11cfe8e65e291fa16605081fd078 406 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 10 18 - T 23-04-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS01945 682d11cfe8e65e291fa16605081fd078 406 SUPERFAMILY SSF69864 175 402 5.36E-90 T 23-04-2016 RD1_RS01945 682d11cfe8e65e291fa16605081fd078 406 PANTHER PTHR11587:SF2 1 406 8.1E-228 T 23-04-2016 RD1_RS01945 682d11cfe8e65e291fa16605081fd078 406 Gene3D G3DSA:3.90.1260.10 178 402 4.2E-96 T 23-04-2016 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS01945 682d11cfe8e65e291fa16605081fd078 406 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 118 129 - T 23-04-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS01945 682d11cfe8e65e291fa16605081fd078 406 Pfam PF00764 Arginosuccinate synthase 8 396 1.6E-153 T 23-04-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS01945 682d11cfe8e65e291fa16605081fd078 406 PANTHER PTHR11587 1 406 8.1E-228 T 23-04-2016 RD1_RS01945 682d11cfe8e65e291fa16605081fd078 406 Gene3D G3DSA:3.40.50.620 5 172 1.8E-67 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS01945 682d11cfe8e65e291fa16605081fd078 406 TIGRFAM TIGR00032 argG: argininosuccinate synthase 6 398 9.4E-144 T 23-04-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RD1_RS01945 682d11cfe8e65e291fa16605081fd078 406 SUPERFAMILY SSF52402 5 168 4.63E-49 T 23-04-2016 RD1_RS03235 542ec8ff061196db2ff9a3ee95e826e1 329 PANTHER PTHR11795:SF398 9 60 5.5E-54 T 23-04-2016 RD1_RS03235 542ec8ff061196db2ff9a3ee95e826e1 329 PANTHER PTHR11795:SF398 81 329 5.5E-54 T 23-04-2016 RD1_RS03235 542ec8ff061196db2ff9a3ee95e826e1 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 315 1.8E-25 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS03235 542ec8ff061196db2ff9a3ee95e826e1 329 PANTHER PTHR11795 9 60 5.5E-54 T 23-04-2016 RD1_RS03235 542ec8ff061196db2ff9a3ee95e826e1 329 PANTHER PTHR11795 81 329 5.5E-54 T 23-04-2016 RD1_RS06080 dc16efb9f7a5fcb088e2f24d7b617656 292 Gene3D G3DSA:3.40.190.10 101 176 6.5E-13 T 23-04-2016 RD1_RS06080 dc16efb9f7a5fcb088e2f24d7b617656 292 SUPERFAMILY SSF53850 90 291 2.95E-33 T 23-04-2016 RD1_RS06080 dc16efb9f7a5fcb088e2f24d7b617656 292 Pfam PF03466 LysR substrate binding domain 91 287 5.0E-28 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS06080 dc16efb9f7a5fcb088e2f24d7b617656 292 PANTHER PTHR30537 1 291 3.4E-52 T 23-04-2016 RD1_RS06080 dc16efb9f7a5fcb088e2f24d7b617656 292 SUPERFAMILY SSF46785 4 88 8.33E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS06080 dc16efb9f7a5fcb088e2f24d7b617656 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 1.1E-14 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS06080 dc16efb9f7a5fcb088e2f24d7b617656 292 Gene3D G3DSA:3.40.190.10 177 253 5.6E-9 T 23-04-2016 RD1_RS06080 dc16efb9f7a5fcb088e2f24d7b617656 292 Gene3D G3DSA:1.10.10.10 4 84 2.0E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS03975 c2fbd74585e5dd8bc59a56708230da9d 351 PANTHER PTHR32196:SF21 1 335 3.0E-47 T 23-04-2016 RD1_RS03975 c2fbd74585e5dd8bc59a56708230da9d 351 PANTHER PTHR32196 1 335 3.0E-47 T 23-04-2016 RD1_RS03975 c2fbd74585e5dd8bc59a56708230da9d 351 Pfam PF02653 Branched-chain amino acid transport system / permease component 54 332 3.2E-36 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS14015 f6b06505a0355d186b230ed2f8c5e3c1 1006 PANTHER PTHR24221 23 480 1.1E-27 T 23-04-2016 RD1_RS14015 f6b06505a0355d186b230ed2f8c5e3c1 1006 Gene3D G3DSA:1.20.1560.10 6 323 1.1E-33 T 23-04-2016 RD1_RS14015 f6b06505a0355d186b230ed2f8c5e3c1 1006 SMART SM00100 883 1002 1.8E-14 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS14015 f6b06505a0355d186b230ed2f8c5e3c1 1006 SUPERFAMILY SSF90123 6 320 1.15E-39 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS14015 f6b06505a0355d186b230ed2f8c5e3c1 1006 Gene3D G3DSA:2.60.120.10 871 999 1.5E-23 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS14015 f6b06505a0355d186b230ed2f8c5e3c1 1006 Pfam PF00664 ABC transporter transmembrane region 55 293 7.3E-16 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS14015 f6b06505a0355d186b230ed2f8c5e3c1 1006 Pfam PF00027 Cyclic nucleotide-binding domain 905 989 3.9E-18 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS14015 f6b06505a0355d186b230ed2f8c5e3c1 1006 Gene3D G3DSA:3.40.50.300 746 860 1.5E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14015 f6b06505a0355d186b230ed2f8c5e3c1 1006 Gene3D G3DSA:3.40.50.300 354 467 1.5E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14015 f6b06505a0355d186b230ed2f8c5e3c1 1006 SUPERFAMILY SSF52540 348 451 2.83E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14015 f6b06505a0355d186b230ed2f8c5e3c1 1006 SUPERFAMILY SSF52540 745 857 2.83E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14015 f6b06505a0355d186b230ed2f8c5e3c1 1006 PANTHER PTHR24221:SF161 23 480 1.1E-27 T 23-04-2016 RD1_RS14015 f6b06505a0355d186b230ed2f8c5e3c1 1006 SUPERFAMILY SSF51206 876 1002 2.62E-25 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RD1_RS14155 0f0e3c9e6f032bd256879309eee65b04 511 Gene3D G3DSA:3.40.50.300 278 498 6.1E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14155 0f0e3c9e6f032bd256879309eee65b04 511 SMART SM00382 286 480 1.9E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS14155 0f0e3c9e6f032bd256879309eee65b04 511 SMART SM00382 37 226 4.1E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS14155 0f0e3c9e6f032bd256879309eee65b04 511 PANTHER PTHR24220 14 386 2.9E-149 T 23-04-2016 RD1_RS14155 0f0e3c9e6f032bd256879309eee65b04 511 ProSitePatterns PS00211 ABC transporters family signature. 404 418 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS14155 0f0e3c9e6f032bd256879309eee65b04 511 Pfam PF00005 ABC transporter 28 178 9.1E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS14155 0f0e3c9e6f032bd256879309eee65b04 511 Pfam PF00005 ABC transporter 279 431 2.2E-20 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS14155 0f0e3c9e6f032bd256879309eee65b04 511 Gene3D G3DSA:3.40.50.300 11 244 2.5E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14155 0f0e3c9e6f032bd256879309eee65b04 511 SUPERFAMILY SSF52540 11 237 1.41E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14155 0f0e3c9e6f032bd256879309eee65b04 511 SUPERFAMILY SSF52540 274 491 1.41E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14155 0f0e3c9e6f032bd256879309eee65b04 511 PANTHER PTHR24220:SF416 14 386 2.9E-149 T 23-04-2016 RD1_RS00165 ce5c9245b24c4e20dae718c88a13bd32 420 SUPERFAMILY SSF51905 18 193 1.13E-57 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00165 ce5c9245b24c4e20dae718c88a13bd32 420 SUPERFAMILY SSF51905 283 401 1.13E-57 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00165 ce5c9245b24c4e20dae718c88a13bd32 420 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 18 406 1.1E-126 T 23-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 RD1_RS00165 ce5c9245b24c4e20dae718c88a13bd32 420 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 172 187 3.1E-17 T 23-04-2016 RD1_RS00165 ce5c9245b24c4e20dae718c88a13bd32 420 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 311 3.1E-17 T 23-04-2016 RD1_RS00165 ce5c9245b24c4e20dae718c88a13bd32 420 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 18 40 3.1E-17 T 23-04-2016 RD1_RS00165 ce5c9245b24c4e20dae718c88a13bd32 420 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 311 327 3.1E-17 T 23-04-2016 RD1_RS00165 ce5c9245b24c4e20dae718c88a13bd32 420 PANTHER PTHR13789 18 415 3.1E-112 T 23-04-2016 RD1_RS00165 ce5c9245b24c4e20dae718c88a13bd32 420 PANTHER PTHR13789:SF5 18 415 3.1E-112 T 23-04-2016 RD1_RS00165 ce5c9245b24c4e20dae718c88a13bd32 420 Pfam PF01494 FAD binding domain 17 330 1.2E-26 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 RD1_RS00165 ce5c9245b24c4e20dae718c88a13bd32 420 Gene3D G3DSA:3.50.50.60 284 372 2.3E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00165 ce5c9245b24c4e20dae718c88a13bd32 420 Gene3D G3DSA:3.50.50.60 17 198 2.3E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00165 ce5c9245b24c4e20dae718c88a13bd32 420 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 310 323 - T 23-04-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 UniPathway: UPA00232 RD1_RS03095 12156224e6f3db4da6d573245079f49a 295 Gene3D G3DSA:2.60.120.620 4 234 1.1E-54 T 23-04-2016 RD1_RS03095 12156224e6f3db4da6d573245079f49a 295 PANTHER PTHR20883 1 240 5.4E-39 T 23-04-2016 RD1_RS03095 12156224e6f3db4da6d573245079f49a 295 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 13 220 4.3E-33 T 23-04-2016 IPR008775 Phytanoyl-CoA dioxygenase RD1_RS03095 12156224e6f3db4da6d573245079f49a 295 SUPERFAMILY SSF51197 1 277 3.66E-65 T 23-04-2016 RD1_RS01730 9978fee4acd207a270b23cd667927267 163 PANTHER PTHR36504 5 159 6.1E-16 T 23-04-2016 RD1_RS01730 9978fee4acd207a270b23cd667927267 163 Gene3D G3DSA:2.60.450.10 33 157 7.7E-32 T 23-04-2016 RD1_RS01730 9978fee4acd207a270b23cd667927267 163 Pfam PF03968 OstA-like protein 41 146 7.4E-22 T 23-04-2016 IPR005653 Organic solvent tolerance-like, N-terminal RD1_RS01730 9978fee4acd207a270b23cd667927267 163 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 36 156 1.0E-20 T 23-04-2016 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 RD1_RS11175 b533e3d32c14f3f194f093dcf3d08368 284 PANTHER PTHR24103 60 244 2.4E-21 T 23-04-2016 RD1_RS11175 b533e3d32c14f3f194f093dcf3d08368 284 Pfam PF01436 NHL repeat 175 201 4.1E-5 T 23-04-2016 IPR001258 NHL repeat GO:0005515 RD1_RS11175 b533e3d32c14f3f194f093dcf3d08368 284 Gene3D G3DSA:2.120.10.30 15 282 1.4E-40 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RD1_RS11175 b533e3d32c14f3f194f093dcf3d08368 284 PANTHER PTHR24103:SF378 60 244 2.4E-21 T 23-04-2016 RD1_RS11175 b533e3d32c14f3f194f093dcf3d08368 284 SUPERFAMILY SSF101898 25 282 1.57E-30 T 23-04-2016 RD1_RS00095 708ff5cdc7f01323ae1cc7b36fa0016b 206 PANTHER PTHR30086 1 206 5.9E-25 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS00095 708ff5cdc7f01323ae1cc7b36fa0016b 206 Pfam PF01810 LysE type translocator 15 199 4.2E-16 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS00125 91b0c1be1e41eeb340cc70d260f9d081 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 39 64 2.3E-31 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS00125 91b0c1be1e41eeb340cc70d260f9d081 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 128 147 2.3E-31 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS00125 91b0c1be1e41eeb340cc70d260f9d081 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 372 390 2.3E-31 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS00125 91b0c1be1e41eeb340cc70d260f9d081 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 253 272 2.3E-31 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS00125 91b0c1be1e41eeb340cc70d260f9d081 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 403 418 2.3E-31 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS00125 91b0c1be1e41eeb340cc70d260f9d081 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 110 128 2.3E-31 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS00125 91b0c1be1e41eeb340cc70d260f9d081 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 348 366 2.3E-31 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS00125 91b0c1be1e41eeb340cc70d260f9d081 525 SUPERFAMILY SSF56235 3 525 9.11E-161 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RD1_RS00125 91b0c1be1e41eeb340cc70d260f9d081 525 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 17 517 4.0E-110 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS00125 91b0c1be1e41eeb340cc70d260f9d081 525 PANTHER PTHR11686:SF8 9 525 2.5E-189 T 23-04-2016 RD1_RS00125 91b0c1be1e41eeb340cc70d260f9d081 525 PANTHER PTHR11686 9 525 2.5E-189 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS00125 91b0c1be1e41eeb340cc70d260f9d081 525 Pfam PF01019 Gamma-glutamyltranspeptidase 32 520 3.1E-140 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RD1_RS10820 e5dc6bf32e585ca6032ac32401c07f2c 194 PANTHER PTHR34406 1 194 2.6E-47 T 23-04-2016 RD1_RS10820 e5dc6bf32e585ca6032ac32401c07f2c 194 SUPERFAMILY SSF101874 22 192 1.83E-48 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS10820 e5dc6bf32e585ca6032ac32401c07f2c 194 SMART SM00867 24 191 5.7E-58 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS10820 e5dc6bf32e585ca6032ac32401c07f2c 194 Gene3D G3DSA:2.40.128.110 24 192 4.7E-53 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS10820 e5dc6bf32e585ca6032ac32401c07f2c 194 PANTHER PTHR34406:SF1 1 194 2.6E-47 T 23-04-2016 RD1_RS10820 e5dc6bf32e585ca6032ac32401c07f2c 194 Pfam PF04264 YceI-like domain 25 190 2.5E-41 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS05665 804f028a250d6af2bb0dfb82bbf147f6 68 Gene3D G3DSA:2.40.50.140 1 63 2.3E-25 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS05665 804f028a250d6af2bb0dfb82bbf147f6 68 PANTHER PTHR11544 1 53 1.6E-20 T 23-04-2016 RD1_RS05665 804f028a250d6af2bb0dfb82bbf147f6 68 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 23-04-2016 IPR019844 Cold-shock conserved site RD1_RS05665 804f028a250d6af2bb0dfb82bbf147f6 68 Pfam PF00313 'Cold-shock' DNA-binding domain 3 64 4.4E-23 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS05665 804f028a250d6af2bb0dfb82bbf147f6 68 PIRSF PIRSF002599 1 67 1.5E-21 T 23-04-2016 IPR012156 Cold shock, CspA GO:0003676 RD1_RS05665 804f028a250d6af2bb0dfb82bbf147f6 68 PRINTS PR00050 Cold shock protein signature 4 19 7.2E-13 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS05665 804f028a250d6af2bb0dfb82bbf147f6 68 PRINTS PR00050 Cold shock protein signature 40 58 7.2E-13 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS05665 804f028a250d6af2bb0dfb82bbf147f6 68 PRINTS PR00050 Cold shock protein signature 25 34 7.2E-13 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS05665 804f028a250d6af2bb0dfb82bbf147f6 68 SMART SM00357 3 68 3.5E-22 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 RD1_RS05665 804f028a250d6af2bb0dfb82bbf147f6 68 SUPERFAMILY SSF50249 1 64 3.21E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS10190 a1b587dac90b23a1134adeae0243a475 379 SUPERFAMILY SSF111369 74 227 3.14E-19 T 23-04-2016 RD1_RS10190 a1b587dac90b23a1134adeae0243a475 379 Gene3D G3DSA:2.40.50.100 86 118 9.3E-13 T 23-04-2016 RD1_RS10190 a1b587dac90b23a1134adeae0243a475 379 Gene3D G3DSA:2.40.50.100 193 225 9.3E-13 T 23-04-2016 RD1_RS10190 a1b587dac90b23a1134adeae0243a475 379 PANTHER PTHR30469 8 379 3.4E-48 T 23-04-2016 RD1_RS10190 a1b587dac90b23a1134adeae0243a475 379 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 63 374 1.9E-51 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RD1_RS10190 a1b587dac90b23a1134adeae0243a475 379 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 81 286 1.5E-8 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RD1_RS12650 ba583d504ba29b2f35f13090d48b10e4 517 Pfam PF02386 Cation transport protein 97 246 2.9E-7 T 23-04-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 RD1_RS12650 ba583d504ba29b2f35f13090d48b10e4 517 Pfam PF02386 Cation transport protein 334 507 1.5E-14 T 23-04-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 RD1_RS12650 ba583d504ba29b2f35f13090d48b10e4 517 PANTHER PTHR32024 12 516 2.0E-33 T 23-04-2016 RD1_RS04705 8d51077a60cb9f8517e3bc1629d33b66 1038 Gene3D G3DSA:3.30.420.40 751 827 3.6E-10 T 23-04-2016 RD1_RS04705 8d51077a60cb9f8517e3bc1629d33b66 1038 Gene3D G3DSA:3.30.420.40 596 672 3.6E-10 T 23-04-2016 RD1_RS04705 8d51077a60cb9f8517e3bc1629d33b66 1038 Pfam PF07520 Virulence factor SrfB 9 1035 0.0 T 23-04-2016 IPR009216 Virulence factor SrfB RD1_RS04705 8d51077a60cb9f8517e3bc1629d33b66 1038 SUPERFAMILY SSF53067 596 651 5.68E-10 T 23-04-2016 RD1_RS04705 8d51077a60cb9f8517e3bc1629d33b66 1038 SUPERFAMILY SSF53067 735 866 5.68E-10 T 23-04-2016 RD1_RS04705 8d51077a60cb9f8517e3bc1629d33b66 1038 PIRSF PIRSF034585 8 1038 2.0E-267 T 23-04-2016 IPR009216 Virulence factor SrfB RD1_RS13320 f617b7e48df57b14f31c42f24aea223f 285 Gene3D G3DSA:1.10.10.10 18 90 4.1E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS13320 f617b7e48df57b14f31c42f24aea223f 285 SUPERFAMILY SSF55781 87 268 1.7E-49 T 23-04-2016 IPR029016 GAF domain-like RD1_RS13320 f617b7e48df57b14f31c42f24aea223f 285 SUPERFAMILY SSF46785 23 96 9.1E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS13320 f617b7e48df57b14f31c42f24aea223f 285 PANTHER PTHR30136:SF3 1 280 1.7E-73 T 23-04-2016 RD1_RS13320 f617b7e48df57b14f31c42f24aea223f 285 PANTHER PTHR30136 1 280 1.7E-73 T 23-04-2016 RD1_RS13320 f617b7e48df57b14f31c42f24aea223f 285 Pfam PF01614 Bacterial transcriptional regulator 141 264 1.4E-33 T 23-04-2016 IPR014757 Transcription regulator IclR, C-terminal RD1_RS13320 f617b7e48df57b14f31c42f24aea223f 285 SMART SM00346 23 112 2.5E-23 T 23-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RD1_RS13320 f617b7e48df57b14f31c42f24aea223f 285 Gene3D G3DSA:3.30.450.40 91 271 2.0E-54 T 23-04-2016 IPR029016 GAF domain-like RD1_RS13320 f617b7e48df57b14f31c42f24aea223f 285 Pfam PF09339 IclR helix-turn-helix domain 25 74 4.1E-12 T 23-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RD1_RS01190 f1613b45ea37dc4f6079d80cd45d0018 89 Pfam PF01313 Bacterial export proteins, family 3 8 78 2.2E-24 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RD1_RS01190 f1613b45ea37dc4f6079d80cd45d0018 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 19 40 1.1E-16 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RD1_RS01190 f1613b45ea37dc4f6079d80cd45d0018 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 55 77 1.1E-16 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RD1_RS01190 f1613b45ea37dc4f6079d80cd45d0018 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 40 55 1.1E-16 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RD1_RS01190 f1613b45ea37dc4f6079d80cd45d0018 89 PANTHER PTHR34040 3 88 1.8E-21 T 23-04-2016 RD1_RS01190 f1613b45ea37dc4f6079d80cd45d0018 89 PANTHER PTHR34040:SF2 3 88 1.8E-21 T 23-04-2016 RD1_RS01190 f1613b45ea37dc4f6079d80cd45d0018 89 PIRSF PIRSF004669 1 87 3.8E-23 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RD1_RS04530 168b4208de7525d0efb4569634e9f093 333 PANTHER PTHR30024 1 299 1.9E-26 T 23-04-2016 RD1_RS04530 168b4208de7525d0efb4569634e9f093 333 SUPERFAMILY SSF53850 29 249 9.62E-30 T 23-04-2016 RD1_RS04530 168b4208de7525d0efb4569634e9f093 333 Gene3D G3DSA:3.40.190.10 127 235 4.6E-12 T 23-04-2016 RD1_RS04530 168b4208de7525d0efb4569634e9f093 333 Pfam PF09084 NMT1/THI5 like 40 243 3.0E-12 T 23-04-2016 IPR015168 SsuA/THI5-like RD1_RS17230 488d6133f1dc658e226601f52213a8fd 340 Pfam PF00248 Aldo/keto reductase family 18 329 1.1E-45 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS17230 488d6133f1dc658e226601f52213a8fd 340 PANTHER PTHR11732:SF241 113 339 3.7E-107 T 23-04-2016 RD1_RS17230 488d6133f1dc658e226601f52213a8fd 340 SUPERFAMILY SSF51430 8 330 1.27E-62 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS17230 488d6133f1dc658e226601f52213a8fd 340 Gene3D G3DSA:3.20.20.100 8 330 5.0E-51 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS17230 488d6133f1dc658e226601f52213a8fd 340 PANTHER PTHR11732:SF241 4 94 3.7E-107 T 23-04-2016 RD1_RS17230 488d6133f1dc658e226601f52213a8fd 340 PANTHER PTHR11732 113 339 3.7E-107 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RD1_RS17230 488d6133f1dc658e226601f52213a8fd 340 PANTHER PTHR11732 4 94 3.7E-107 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RD1_RS17725 8a90d8eaf1c9849cce1f02f85270b306 396 Gene3D G3DSA:3.20.20.30 2 347 1.2E-71 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RD1_RS17725 8a90d8eaf1c9849cce1f02f85270b306 396 PANTHER PTHR30137:SF1 1 355 1.3E-127 T 23-04-2016 RD1_RS17725 8a90d8eaf1c9849cce1f02f85270b306 396 PANTHER PTHR30137 1 355 1.3E-127 T 23-04-2016 RD1_RS17725 8a90d8eaf1c9849cce1f02f85270b306 396 SUPERFAMILY SSF51679 5 345 2.12E-70 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RD1_RS17725 8a90d8eaf1c9849cce1f02f85270b306 396 Pfam PF00296 Luciferase-like monooxygenase 5 306 4.5E-44 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RD1_RS17135 dd65fe2ee56d79303aa3129c8a58f54d 300 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 4 297 1.1E-90 T 23-04-2016 IPR011877 Ribokinase, bacterial type GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|UniPathway: UPA00916 RD1_RS17135 dd65fe2ee56d79303aa3129c8a58f54d 300 PANTHER PTHR10584:SF166 1 300 1.1E-84 T 23-04-2016 RD1_RS17135 dd65fe2ee56d79303aa3129c8a58f54d 300 PRINTS PR00990 Ribokinase signature 6 27 4.2E-27 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RD1_RS17135 dd65fe2ee56d79303aa3129c8a58f54d 300 PRINTS PR00990 Ribokinase signature 33 52 4.2E-27 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RD1_RS17135 dd65fe2ee56d79303aa3129c8a58f54d 300 PRINTS PR00990 Ribokinase signature 217 228 4.2E-27 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RD1_RS17135 dd65fe2ee56d79303aa3129c8a58f54d 300 PRINTS PR00990 Ribokinase signature 173 188 4.2E-27 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RD1_RS17135 dd65fe2ee56d79303aa3129c8a58f54d 300 PRINTS PR00990 Ribokinase signature 105 118 4.2E-27 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RD1_RS17135 dd65fe2ee56d79303aa3129c8a58f54d 300 SUPERFAMILY SSF53613 1 300 2.03E-76 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS17135 dd65fe2ee56d79303aa3129c8a58f54d 300 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 38 62 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RD1_RS17135 dd65fe2ee56d79303aa3129c8a58f54d 300 PANTHER PTHR10584 1 300 1.1E-84 T 23-04-2016 RD1_RS17135 dd65fe2ee56d79303aa3129c8a58f54d 300 Pfam PF00294 pfkB family carbohydrate kinase 3 292 1.5E-61 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RD1_RS17135 dd65fe2ee56d79303aa3129c8a58f54d 300 Gene3D G3DSA:3.40.1190.20 2 300 1.7E-85 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS13465 f22334f35be50074f9bad7b0b402ae2e 347 SUPERFAMILY SSF52151 6 133 7.06E-29 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RD1_RS13465 f22334f35be50074f9bad7b0b402ae2e 347 SUPERFAMILY SSF52151 210 315 7.06E-29 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RD1_RS13465 f22334f35be50074f9bad7b0b402ae2e 347 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 36 319 4.7E-4 T 23-04-2016 IPR020801 Polyketide synthase, acyl transferase domain RD1_RS13465 f22334f35be50074f9bad7b0b402ae2e 347 Gene3D G3DSA:3.40.366.10 3 127 2.4E-19 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RD1_RS13465 f22334f35be50074f9bad7b0b402ae2e 347 Gene3D G3DSA:3.40.366.10 208 307 2.4E-19 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RD1_RS10810 9bab727f7a3bb9945418fcb7f5eff0f7 537 SUPERFAMILY SSF53649 278 480 2.39E-8 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RD1_RS10810 9bab727f7a3bb9945418fcb7f5eff0f7 537 Pfam PF00884 Sulfatase 295 468 1.6E-6 T 23-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 RD1_RS10810 9bab727f7a3bb9945418fcb7f5eff0f7 537 Gene3D G3DSA:3.40.720.10 287 468 5.4E-6 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RD1_RS00115 a2d738ae0aa43bf4ef568296783b1cee 117 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 1 104 7.4E-18 T 23-04-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 RD1_RS00115 a2d738ae0aa43bf4ef568296783b1cee 117 Gene3D G3DSA:3.30.750.24 3 113 2.5E-28 T 23-04-2016 IPR002645 STAS domain RD1_RS00115 a2d738ae0aa43bf4ef568296783b1cee 117 PANTHER PTHR33495 1 114 4.4E-24 T 23-04-2016 RD1_RS00115 a2d738ae0aa43bf4ef568296783b1cee 117 SUPERFAMILY SSF52091 1 108 3.34E-23 T 23-04-2016 IPR002645 STAS domain RD1_RS00115 a2d738ae0aa43bf4ef568296783b1cee 117 Pfam PF01740 STAS domain 12 105 2.5E-13 T 23-04-2016 IPR002645 STAS domain RD1_RS05700 e34a149b98096c92273d3d68c4cacb2f 96 Gene3D G3DSA:3.30.300.20 7 80 5.8E-5 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RD1_RS18810 1141d56b384f89bf0f6ad0cc265388ae 142 SUPERFAMILY SSF52402 1 141 5.19E-19 T 23-04-2016 RD1_RS18810 1141d56b384f89bf0f6ad0cc265388ae 142 Pfam PF00582 Universal stress protein family 1 141 7.7E-17 T 23-04-2016 IPR006016 UspA GO:0006950 RD1_RS18810 1141d56b384f89bf0f6ad0cc265388ae 142 Gene3D G3DSA:3.40.50.620 3 141 4.7E-23 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS15875 6d2b4e4fbc6eb9bce99ae7db8be2fb7a 272 Gene3D G3DSA:3.30.420.10 118 272 1.1E-40 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS15875 6d2b4e4fbc6eb9bce99ae7db8be2fb7a 272 SUPERFAMILY SSF53098 117 271 4.81E-42 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS15875 6d2b4e4fbc6eb9bce99ae7db8be2fb7a 272 PANTHER PTHR32552 8 272 2.6E-65 T 23-04-2016 RD1_RS15875 6d2b4e4fbc6eb9bce99ae7db8be2fb7a 272 Pfam PF13276 HTH-like domain 44 99 5.9E-14 T 23-04-2016 IPR025948 HTH-like domain RD1_RS15875 6d2b4e4fbc6eb9bce99ae7db8be2fb7a 272 Pfam PF00665 Integrase core domain 124 237 1.5E-32 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS15485 d97a79d40af6c3f1af44665c8969804f 810 Gene3D G3DSA:1.10.10.160 136 210 7.4E-23 T 23-04-2016 IPR013986 DExx box DNA helicase domain RD1_RS15485 d97a79d40af6c3f1af44665c8969804f 810 Gene3D G3DSA:1.10.486.10 416 578 2.7E-46 T 23-04-2016 RD1_RS15485 d97a79d40af6c3f1af44665c8969804f 810 Pfam PF00580 UvrD/REP helicase N-terminal domain 31 295 1.1E-75 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RD1_RS15485 d97a79d40af6c3f1af44665c8969804f 810 Gene3D G3DSA:3.40.50.300 589 696 2.7E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15485 d97a79d40af6c3f1af44665c8969804f 810 Gene3D G3DSA:3.40.50.300 309 415 2.7E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15485 d97a79d40af6c3f1af44665c8969804f 810 Gene3D G3DSA:3.40.50.300 211 308 1.6E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15485 d97a79d40af6c3f1af44665c8969804f 810 Gene3D G3DSA:3.40.50.300 26 132 1.6E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15485 d97a79d40af6c3f1af44665c8969804f 810 PANTHER PTHR11070 27 505 5.8E-194 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RD1_RS15485 d97a79d40af6c3f1af44665c8969804f 810 PANTHER PTHR11070 522 694 5.8E-194 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RD1_RS15485 d97a79d40af6c3f1af44665c8969804f 810 SUPERFAMILY SSF52540 485 694 9.96E-168 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15485 d97a79d40af6c3f1af44665c8969804f 810 SUPERFAMILY SSF52540 21 453 9.96E-168 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15485 d97a79d40af6c3f1af44665c8969804f 810 Pfam PF13361 UvrD-like helicase C-terminal domain 546 662 9.9E-26 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RD1_RS15485 d97a79d40af6c3f1af44665c8969804f 810 Pfam PF13361 UvrD-like helicase C-terminal domain 300 465 1.5E-30 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RD1_RS15485 d97a79d40af6c3f1af44665c8969804f 810 PANTHER PTHR11070:SF7 27 505 5.8E-194 T 23-04-2016 RD1_RS15485 d97a79d40af6c3f1af44665c8969804f 810 PANTHER PTHR11070:SF7 522 694 5.8E-194 T 23-04-2016 RD1_RS16895 1075343a408afa1b650dcdabee1f16d4 454 Pfam PF01979 Amidohydrolase family 45 425 5.3E-24 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RD1_RS16895 1075343a408afa1b650dcdabee1f16d4 454 SUPERFAMILY SSF51556 48 373 2.27E-63 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS16895 1075343a408afa1b650dcdabee1f16d4 454 PANTHER PTHR11271 15 452 1.1E-120 T 23-04-2016 RD1_RS16895 1075343a408afa1b650dcdabee1f16d4 454 Gene3D G3DSA:3.20.20.140 51 393 5.2E-61 T 23-04-2016 RD1_RS16895 1075343a408afa1b650dcdabee1f16d4 454 SUPERFAMILY SSF51338 376 448 4.1E-6 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS16895 1075343a408afa1b650dcdabee1f16d4 454 PANTHER PTHR11271:SF4 15 452 1.1E-120 T 23-04-2016 IPR010252 Formiminoglutamate deiminase RD1_RS16895 1075343a408afa1b650dcdabee1f16d4 454 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 1 451 2.0E-152 T 23-04-2016 IPR010252 Formiminoglutamate deiminase RD1_RS02240 baf90aad93b392df77567d1f6e01feee 389 Gene3D G3DSA:2.60.120.620 64 285 1.2E-16 T 23-04-2016 RD1_RS02240 baf90aad93b392df77567d1f6e01feee 389 SUPERFAMILY SSF51197 79 357 1.1E-49 T 23-04-2016 RD1_RS02240 baf90aad93b392df77567d1f6e01feee 389 PANTHER PTHR21308 18 371 2.0E-60 T 23-04-2016 RD1_RS02240 baf90aad93b392df77567d1f6e01feee 389 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 78 287 1.6E-25 T 23-04-2016 IPR008775 Phytanoyl-CoA dioxygenase RD1_RS02240 baf90aad93b392df77567d1f6e01feee 389 PANTHER PTHR21308:SF1 18 371 2.0E-60 T 23-04-2016 RD1_RS16910 6a62edbbc4c15183c1172c5adc25176d 264 Pfam PF05013 N-formylglutamate amidohydrolase 11 227 9.0E-67 T 23-04-2016 IPR007709 N-formylglutamate amidohydrolase RD1_RS16910 6a62edbbc4c15183c1172c5adc25176d 264 SUPERFAMILY SSF53187 3 260 2.9E-82 T 23-04-2016 RD1_RS16910 6a62edbbc4c15183c1172c5adc25176d 264 Gene3D G3DSA:3.40.630.40 3 261 8.8E-88 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RD1_RS16910 6a62edbbc4c15183c1172c5adc25176d 264 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 4 259 9.9E-106 T 23-04-2016 IPR010247 N-formylglutamate deformylase RD1_RS10220 0560bf852375fd6a3cd3170cf2030f6c 338 Gene3D G3DSA:3.40.50.2300 21 144 3.0E-34 T 23-04-2016 RD1_RS10220 0560bf852375fd6a3cd3170cf2030f6c 338 PANTHER PTHR32196 29 303 1.4E-27 T 23-04-2016 RD1_RS10220 0560bf852375fd6a3cd3170cf2030f6c 338 PANTHER PTHR32196:SF9 29 303 1.4E-27 T 23-04-2016 RD1_RS10220 0560bf852375fd6a3cd3170cf2030f6c 338 Gene3D G3DSA:3.40.50.2300 145 322 2.3E-39 T 23-04-2016 RD1_RS10220 0560bf852375fd6a3cd3170cf2030f6c 338 SUPERFAMILY SSF53822 8 322 2.16E-62 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS10220 0560bf852375fd6a3cd3170cf2030f6c 338 Pfam PF13407 Periplasmic binding protein domain 29 295 3.2E-43 T 23-04-2016 IPR025997 Periplasmic binding protein RD1_RS07040 151af922e24c1044399f3441c3d0c9f7 146 Pfam PF03625 Domain of unknown function DUF302 75 120 1.1E-5 T 23-04-2016 IPR005180 Domain of unknown function DUF302 RD1_RS07040 151af922e24c1044399f3441c3d0c9f7 146 SUPERFAMILY SSF103247 25 122 2.35E-14 T 23-04-2016 IPR005180 Domain of unknown function DUF302 RD1_RS07040 151af922e24c1044399f3441c3d0c9f7 146 Gene3D G3DSA:3.30.310.70 26 121 1.9E-8 T 23-04-2016 IPR005180 Domain of unknown function DUF302 RD1_RS06585 7440fd3c4027ba5e4e03a7b038daf913 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 23-04-2016 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 RD1_RS06585 7440fd3c4027ba5e4e03a7b038daf913 101 SUPERFAMILY SSF57716 2 101 4.75E-38 T 23-04-2016 RD1_RS06585 7440fd3c4027ba5e4e03a7b038daf913 101 PANTHER PTHR19836 1 101 4.2E-57 T 23-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06585 7440fd3c4027ba5e4e03a7b038daf913 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 1.8E-23 T 23-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06585 7440fd3c4027ba5e4e03a7b038daf913 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 27.015 T 23-04-2016 IPR023036 Ribosomal protein S14, bacterial/plastid RD1_RS06585 7440fd3c4027ba5e4e03a7b038daf913 101 Gene3D G3DSA:4.10.830.10 41 101 1.3E-29 T 23-04-2016 RD1_RS17335 f2fbc5074ca03b9dddf481d8f5920472 216 SMART SM01007 9 188 6.4E-55 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS17335 f2fbc5074ca03b9dddf481d8f5920472 216 Gene3D G3DSA:3.40.225.10 3 214 3.3E-61 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS17335 f2fbc5074ca03b9dddf481d8f5920472 216 PANTHER PTHR22789:SF6 1 212 4.7E-85 T 23-04-2016 RD1_RS17335 f2fbc5074ca03b9dddf481d8f5920472 216 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 187 1.1E-38 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS17335 f2fbc5074ca03b9dddf481d8f5920472 216 SUPERFAMILY SSF53639 4 211 7.06E-55 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS17335 f2fbc5074ca03b9dddf481d8f5920472 216 PANTHER PTHR22789 1 212 4.7E-85 T 23-04-2016 RD1_RS15085 430e13f7300256719780bbef5387dfcc 232 Gene3D G3DSA:1.20.1250.20 9 64 9.0E-4 T 23-04-2016 RD1_RS15085 430e13f7300256719780bbef5387dfcc 232 Gene3D G3DSA:1.10.150.20 168 201 1.5E-4 T 23-04-2016 RD1_RS12080 8687376de99bbcf4cbf223e2570463c9 225 Pfam PF06776 Invasion associated locus B (IalB) protein 85 219 2.5E-34 T 23-04-2016 IPR010642 Invasion protein B RD1_RS07320 29d1ca261ebd979887262f0466b15977 6682 Gene3D G3DSA:2.60.40.670 4765 4842 1.9E-9 T 23-04-2016 IPR000601 PKD domain RD1_RS07320 29d1ca261ebd979887262f0466b15977 6682 SUPERFAMILY SSF49299 4737 4837 3.53E-9 T 23-04-2016 IPR000601 PKD domain RD1_RS17325 918604602eab4b4b0ec119157d990697 335 SUPERFAMILY SSF52317 8 195 3.11E-35 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS17325 918604602eab4b4b0ec119157d990697 335 SUPERFAMILY SSF46689 218 268 1.01E-9 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS17325 918604602eab4b4b0ec119157d990697 335 Gene3D G3DSA:1.10.10.60 218 270 2.6E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS17325 918604602eab4b4b0ec119157d990697 335 PANTHER PTHR11019:SF90 11 30 3.9E-41 T 23-04-2016 RD1_RS17325 918604602eab4b4b0ec119157d990697 335 PANTHER PTHR11019:SF90 56 325 3.9E-41 T 23-04-2016 RD1_RS17325 918604602eab4b4b0ec119157d990697 335 Pfam PF12833 Helix-turn-helix domain 241 318 1.9E-20 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS17325 918604602eab4b4b0ec119157d990697 335 Gene3D G3DSA:3.40.50.880 8 209 3.0E-30 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS17325 918604602eab4b4b0ec119157d990697 335 PANTHER PTHR11019 11 30 3.9E-41 T 23-04-2016 RD1_RS17325 918604602eab4b4b0ec119157d990697 335 PANTHER PTHR11019 56 325 3.9E-41 T 23-04-2016 RD1_RS17325 918604602eab4b4b0ec119157d990697 335 Gene3D G3DSA:1.10.10.60 271 319 9.6E-9 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS17325 918604602eab4b4b0ec119157d990697 335 SUPERFAMILY SSF46689 270 321 1.63E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS17325 918604602eab4b4b0ec119157d990697 335 SMART SM00342 234 317 3.2E-25 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RD1_RS03805 79d7282b6fa1df09a95e7092ed73310e 346 Pfam PF03601 Conserved hypothetical protein 698 24 325 1.3E-67 T 23-04-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 RD1_RS03805 79d7282b6fa1df09a95e7092ed73310e 346 PANTHER PTHR30106 19 346 7.4E-56 T 23-04-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 RD1_RS00815 7258abbcf9636d17d42def682c211f3b 95 Gene3D G3DSA:3.30.70.900 1 95 2.6E-33 T 23-04-2016 RD1_RS00815 7258abbcf9636d17d42def682c211f3b 95 PANTHER PTHR41521 3 95 4.7E-20 T 23-04-2016 RD1_RS00815 7258abbcf9636d17d42def682c211f3b 95 Pfam PF07045 Domain of unknown function (DUF1330) 3 95 1.1E-30 T 23-04-2016 IPR010753 Domain of unknown function DUF1330 RD1_RS00815 7258abbcf9636d17d42def682c211f3b 95 SUPERFAMILY SSF54909 1 95 1.69E-30 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS02755 e675d903728516ade0f7d42fd9ff4d59 213 Gene3D G3DSA:3.40.50.150 21 166 2.0E-21 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS02755 e675d903728516ade0f7d42fd9ff4d59 213 Pfam PF08241 Methyltransferase domain 65 157 4.8E-13 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RD1_RS02755 e675d903728516ade0f7d42fd9ff4d59 213 SUPERFAMILY SSF53335 19 166 9.91E-23 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS02755 e675d903728516ade0f7d42fd9ff4d59 213 PANTHER PTHR10108 23 159 1.1E-16 T 23-04-2016 RD1_RS15210 d4f87cdea53e28a11a984271833b1f31 387 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 15 372 3.5E-101 T 23-04-2016 IPR017439 Amidohydrolase GO:0016787 RD1_RS15210 d4f87cdea53e28a11a984271833b1f31 387 Gene3D G3DSA:3.40.630.10 302 384 1.1E-96 T 23-04-2016 RD1_RS15210 d4f87cdea53e28a11a984271833b1f31 387 Gene3D G3DSA:3.40.630.10 3 181 1.1E-96 T 23-04-2016 RD1_RS15210 d4f87cdea53e28a11a984271833b1f31 387 PANTHER PTHR11014:SF63 1 387 4.9E-150 T 23-04-2016 RD1_RS15210 d4f87cdea53e28a11a984271833b1f31 387 SUPERFAMILY SSF53187 302 383 1.1E-85 T 23-04-2016 RD1_RS15210 d4f87cdea53e28a11a984271833b1f31 387 SUPERFAMILY SSF53187 2 200 1.1E-85 T 23-04-2016 RD1_RS15210 d4f87cdea53e28a11a984271833b1f31 387 PIRSF PIRSF005962 2 386 1.3E-122 T 23-04-2016 IPR017439 Amidohydrolase GO:0016787 RD1_RS15210 d4f87cdea53e28a11a984271833b1f31 387 Gene3D G3DSA:3.30.70.360 184 301 2.6E-39 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS15210 d4f87cdea53e28a11a984271833b1f31 387 Pfam PF07687 Peptidase dimerisation domain 189 284 1.1E-8 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS15210 d4f87cdea53e28a11a984271833b1f31 387 SUPERFAMILY SSF55031 187 295 8.24E-29 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RD1_RS15210 d4f87cdea53e28a11a984271833b1f31 387 Pfam PF01546 Peptidase family M20/M25/M40 76 381 1.1E-36 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RD1_RS15210 d4f87cdea53e28a11a984271833b1f31 387 PANTHER PTHR11014 1 387 4.9E-150 T 23-04-2016 RD1_RS06490 7822b8f3285c55a9d89f0092d3c9c762 68 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 5.0E-24 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS06490 7822b8f3285c55a9d89f0092d3c9c762 68 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 23-04-2016 IPR019844 Cold-shock conserved site RD1_RS06490 7822b8f3285c55a9d89f0092d3c9c762 68 Gene3D G3DSA:2.40.50.140 1 65 2.2E-26 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS06490 7822b8f3285c55a9d89f0092d3c9c762 68 PANTHER PTHR11544 1 56 2.6E-22 T 23-04-2016 RD1_RS06490 7822b8f3285c55a9d89f0092d3c9c762 68 SMART SM00357 3 68 1.0E-24 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 RD1_RS06490 7822b8f3285c55a9d89f0092d3c9c762 68 PIRSF PIRSF002599 1 68 6.9E-23 T 23-04-2016 IPR012156 Cold shock, CspA GO:0003676 RD1_RS06490 7822b8f3285c55a9d89f0092d3c9c762 68 PRINTS PR00050 Cold shock protein signature 4 19 4.3E-14 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS06490 7822b8f3285c55a9d89f0092d3c9c762 68 PRINTS PR00050 Cold shock protein signature 25 34 4.3E-14 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS06490 7822b8f3285c55a9d89f0092d3c9c762 68 PRINTS PR00050 Cold shock protein signature 40 58 4.3E-14 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS06490 7822b8f3285c55a9d89f0092d3c9c762 68 SUPERFAMILY SSF50249 1 65 8.57E-22 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS03600 88d0753388fc85151fcca35f592f7a69 142 PANTHER PTHR30574:SF1 9 136 5.0E-32 T 23-04-2016 RD1_RS03600 88d0753388fc85151fcca35f592f7a69 142 PANTHER PTHR30574 9 136 5.0E-32 T 23-04-2016 RD1_RS01820 0ca3cd4e108ae635572c34fffc1de6ba 297 PANTHER PTHR30290 1 297 1.4E-28 T 23-04-2016 RD1_RS01820 0ca3cd4e108ae635572c34fffc1de6ba 297 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 83 256 3.4E-20 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain RD1_RS01820 0ca3cd4e108ae635572c34fffc1de6ba 297 Gene3D G3DSA:3.90.76.10 66 187 3.2E-20 T 23-04-2016 RD1_RS01820 0ca3cd4e108ae635572c34fffc1de6ba 297 SUPERFAMILY SSF53850 31 288 5.07E-38 T 23-04-2016 RD1_RS01820 0ca3cd4e108ae635572c34fffc1de6ba 297 Gene3D G3DSA:3.40.190.10 188 287 1.5E-6 T 23-04-2016 RD1_RS06100 7b4d645d4724451773947386ca082135 248 Hamap MF_01393 ATP synthase subunit a [atpB]. 16 247 15.271 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RD1_RS06100 7b4d645d4724451773947386ca082135 248 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 15 243 4.1E-63 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RD1_RS06100 7b4d645d4724451773947386ca082135 248 Gene3D G3DSA:1.20.120.220 86 247 6.0E-48 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RD1_RS06100 7b4d645d4724451773947386ca082135 248 ProSitePatterns PS00449 ATP synthase a subunit signature. 178 187 - T 23-04-2016 IPR023011 ATPase, F0 complex, subunit A, active site RD1_RS06100 7b4d645d4724451773947386ca082135 248 Pfam PF00119 ATP synthase A chain 40 240 6.2E-54 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RD1_RS06100 7b4d645d4724451773947386ca082135 248 PANTHER PTHR11410:SF6 14 248 1.4E-78 T 23-04-2016 RD1_RS06100 7b4d645d4724451773947386ca082135 248 PRINTS PR00123 ATP synthase A subunit signature 155 170 7.0E-27 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RD1_RS06100 7b4d645d4724451773947386ca082135 248 PRINTS PR00123 ATP synthase A subunit signature 227 242 7.0E-27 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RD1_RS06100 7b4d645d4724451773947386ca082135 248 PRINTS PR00123 ATP synthase A subunit signature 94 110 7.0E-27 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RD1_RS06100 7b4d645d4724451773947386ca082135 248 PRINTS PR00123 ATP synthase A subunit signature 175 197 7.0E-27 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RD1_RS06100 7b4d645d4724451773947386ca082135 248 PANTHER PTHR11410 14 248 1.4E-78 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RD1_RS06100 7b4d645d4724451773947386ca082135 248 SUPERFAMILY SSF81336 85 240 1.23E-44 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RD1_RS12805 12bba8a5b24a08fc289f971404d94d80 204 Pfam PF06055 Exopolysaccharide synthesis, ExoD 11 188 8.8E-55 T 23-04-2016 IPR010331 Exopolysaccharide synthesis, ExoD RD1_RS12805 12bba8a5b24a08fc289f971404d94d80 204 PANTHER PTHR41795 11 194 2.5E-25 T 23-04-2016 RD1_RS12805 12bba8a5b24a08fc289f971404d94d80 204 PIRSF PIRSF033239 1 202 8.7E-51 T 23-04-2016 IPR010331 Exopolysaccharide synthesis, ExoD RD1_RS15685 3c45155298b0619f6bc2c3b313cb5c80 348 SMART SM00849 42 260 2.7E-22 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS15685 3c45155298b0619f6bc2c3b313cb5c80 348 PANTHER PTHR11935:SF109 8 267 1.1E-40 T 23-04-2016 RD1_RS15685 3c45155298b0619f6bc2c3b313cb5c80 348 Pfam PF00753 Metallo-beta-lactamase superfamily 40 233 4.5E-22 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS15685 3c45155298b0619f6bc2c3b313cb5c80 348 Gene3D G3DSA:3.60.15.10 11 286 3.6E-53 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS15685 3c45155298b0619f6bc2c3b313cb5c80 348 PANTHER PTHR11935 8 267 1.1E-40 T 23-04-2016 RD1_RS15685 3c45155298b0619f6bc2c3b313cb5c80 348 SUPERFAMILY SSF56281 6 345 5.77E-73 T 23-04-2016 IPR001279 Metallo-beta-lactamase RD1_RS18600 3aadf4ab3c5b56512c515dfe3945009a 64 Pfam PF04102 SlyX 1 64 3.2E-17 T 23-04-2016 IPR007236 SlyX RD1_RS18600 3aadf4ab3c5b56512c515dfe3945009a 64 Gene3D G3DSA:1.20.5.300 2 41 2.2E-4 T 23-04-2016 RD1_RS11310 d751cc15263ebb025636c8aefa2cb816 565 PANTHER PTHR24423:SF468 342 529 4.9E-12 T 23-04-2016 RD1_RS11310 d751cc15263ebb025636c8aefa2cb816 565 PANTHER PTHR24423:SF468 174 205 4.9E-12 T 23-04-2016 RD1_RS11310 d751cc15263ebb025636c8aefa2cb816 565 SUPERFAMILY SSF55874 406 538 2.58E-5 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS11310 d751cc15263ebb025636c8aefa2cb816 565 SMART SM00911 351 441 0.0012 T 23-04-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 RD1_RS11310 d751cc15263ebb025636c8aefa2cb816 565 PANTHER PTHR24423 342 529 4.9E-12 T 23-04-2016 RD1_RS11310 d751cc15263ebb025636c8aefa2cb816 565 PANTHER PTHR24423 174 205 4.9E-12 T 23-04-2016 RD1_RS11310 d751cc15263ebb025636c8aefa2cb816 565 Pfam PF07568 Histidine kinase 351 421 2.7E-20 T 23-04-2016 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain RD1_RS06565 b09cc3f318c5dab60b1d19410caf6443 79 Gene3D G3DSA:2.40.50.140 1 76 2.7E-29 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS06565 b09cc3f318c5dab60b1d19410caf6443 79 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 1 74 4.0E-33 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06565 b09cc3f318c5dab60b1d19410caf6443 79 Pfam PF00366 Ribosomal protein S17 8 74 1.6E-27 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06565 b09cc3f318c5dab60b1d19410caf6443 79 SUPERFAMILY SSF50249 3 75 6.43E-27 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS06565 b09cc3f318c5dab60b1d19410caf6443 79 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 3 73 3.3E-31 T 23-04-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06565 b09cc3f318c5dab60b1d19410caf6443 79 PANTHER PTHR10744 1 74 1.4E-25 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06565 b09cc3f318c5dab60b1d19410caf6443 79 PRINTS PR00973 Ribosomal protein S17 family signature 54 64 7.5E-10 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06565 b09cc3f318c5dab60b1d19410caf6443 79 PRINTS PR00973 Ribosomal protein S17 family signature 22 45 7.5E-10 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06565 b09cc3f318c5dab60b1d19410caf6443 79 PRINTS PR00973 Ribosomal protein S17 family signature 64 71 7.5E-10 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06565 b09cc3f318c5dab60b1d19410caf6443 79 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 1 79 21.768 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS10655 282aa148549dea9b6125a34616c87c3b 169 PANTHER PTHR30466:SF1 12 164 2.0E-33 T 23-04-2016 RD1_RS10655 282aa148549dea9b6125a34616c87c3b 169 Pfam PF01613 Flavin reductase like domain 19 159 3.0E-30 T 23-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RD1_RS10655 282aa148549dea9b6125a34616c87c3b 169 Gene3D G3DSA:2.30.110.10 8 158 7.4E-51 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS10655 282aa148549dea9b6125a34616c87c3b 169 SMART SM00903 18 159 1.4E-54 T 23-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RD1_RS10655 282aa148549dea9b6125a34616c87c3b 169 PANTHER PTHR30466 12 164 2.0E-33 T 23-04-2016 RD1_RS10655 282aa148549dea9b6125a34616c87c3b 169 SUPERFAMILY SSF50475 12 160 2.6E-43 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS11860 4fd0c8039e4f9091ed1de8036b7fa9ad 176 SUPERFAMILY SSF51294 35 75 8.04E-5 T 23-04-2016 IPR028992 Hedgehog/Intein (Hint) domain RD1_RS11860 4fd0c8039e4f9091ed1de8036b7fa9ad 176 Pfam PF13403 Hint domain 33 163 1.3E-19 T 23-04-2016 IPR028992 Hedgehog/Intein (Hint) domain RD1_RS13295 84c2890e0de0dc8168b22aa4574ac059 685 SUPERFAMILY SSF52540 223 343 1.41E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13295 84c2890e0de0dc8168b22aa4574ac059 685 SUPERFAMILY SSF52540 59 137 1.41E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13295 84c2890e0de0dc8168b22aa4574ac059 685 Gene3D G3DSA:3.40.50.300 237 341 6.1E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13295 84c2890e0de0dc8168b22aa4574ac059 685 Gene3D G3DSA:3.40.50.300 68 117 6.1E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS13295 84c2890e0de0dc8168b22aa4574ac059 685 Pfam PF00350 Dynamin family 74 302 6.5E-14 T 23-04-2016 IPR022812 Dynamin superfamily RD1_RS06420 0a16e11a380f28a0b96191a2366bf32a 190 Gene3D G3DSA:1.20.1200.10 16 188 1.7E-65 T 23-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 RD1_RS06420 0a16e11a380f28a0b96191a2366bf32a 190 SUPERFAMILY SSF89028 6 185 1.49E-60 T 23-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 RD1_RS06420 0a16e11a380f28a0b96191a2366bf32a 190 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 8 184 1.0E-59 T 23-04-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 RD1_RS06420 0a16e11a380f28a0b96191a2366bf32a 190 Pfam PF01923 Cobalamin adenosyltransferase 7 173 6.7E-61 T 23-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 RD1_RS06420 0a16e11a380f28a0b96191a2366bf32a 190 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 13 184 7.0E-81 T 23-04-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 RD1_RS06420 0a16e11a380f28a0b96191a2366bf32a 190 PANTHER PTHR12213 1 185 8.0E-75 T 23-04-2016 RD1_RS11110 f49ffa3755ae5fd59f576fce85a2096f 265 SMART SM01134 79 246 7.3E-63 T 23-04-2016 RD1_RS11110 f49ffa3755ae5fd59f576fce85a2096f 265 Gene3D G3DSA:1.10.10.10 9 61 2.1E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11110 f49ffa3755ae5fd59f576fce85a2096f 265 PANTHER PTHR30363:SF1 9 265 3.0E-69 T 23-04-2016 RD1_RS11110 f49ffa3755ae5fd59f576fce85a2096f 265 Pfam PF00455 DeoR C terminal sensor domain 82 245 4.0E-45 T 23-04-2016 IPR014036 DeoR C-terminal sensor domain RD1_RS11110 f49ffa3755ae5fd59f576fce85a2096f 265 SMART SM00420 12 64 4.5E-14 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RD1_RS11110 f49ffa3755ae5fd59f576fce85a2096f 265 PANTHER PTHR30363 9 265 3.0E-69 T 23-04-2016 RD1_RS11110 f49ffa3755ae5fd59f576fce85a2096f 265 Gene3D G3DSA:3.40.50.1360 83 235 3.1E-11 T 23-04-2016 RD1_RS11110 f49ffa3755ae5fd59f576fce85a2096f 265 SUPERFAMILY SSF46785 9 75 1.65E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11110 f49ffa3755ae5fd59f576fce85a2096f 265 Pfam PF08220 DeoR-like helix-turn-helix domain 12 64 6.8E-13 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RD1_RS11110 f49ffa3755ae5fd59f576fce85a2096f 265 SUPERFAMILY SSF100950 172 248 8.37E-29 T 23-04-2016 RD1_RS11110 f49ffa3755ae5fd59f576fce85a2096f 265 SUPERFAMILY SSF100950 82 145 8.37E-29 T 23-04-2016 RD1_RS09635 f94d6876106fa48b252c75a8415c7c85 745 Gene3D G3DSA:3.40.50.300 209 391 4.6E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09635 f94d6876106fa48b252c75a8415c7c85 745 Hamap MF_00983 Probable primosomal protein N' [priA]. 29 744 22.813 T 23-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RD1_RS09635 f94d6876106fa48b252c75a8415c7c85 745 SMART SM00487 207 406 5.4E-17 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RD1_RS09635 f94d6876106fa48b252c75a8415c7c85 745 SMART SM00490 509 606 5.7E-7 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS09635 f94d6876106fa48b252c75a8415c7c85 745 Pfam PF00271 Helicase conserved C-terminal domain 519 605 2.9E-5 T 23-04-2016 IPR001650 Helicase, C-terminal RD1_RS09635 f94d6876106fa48b252c75a8415c7c85 745 TIGRFAM TIGR00595 priA: primosomal protein N' 235 741 2.9E-178 T 23-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RD1_RS09635 f94d6876106fa48b252c75a8415c7c85 745 Pfam PF00270 DEAD/DEAH box helicase 232 374 1.4E-11 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RD1_RS09635 f94d6876106fa48b252c75a8415c7c85 745 SUPERFAMILY SSF52540 520 614 4.99E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09635 f94d6876106fa48b252c75a8415c7c85 745 SUPERFAMILY SSF52540 231 456 4.99E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09635 f94d6876106fa48b252c75a8415c7c85 745 PANTHER PTHR30580 17 745 2.5E-203 T 23-04-2016 RD1_RS09635 f94d6876106fa48b252c75a8415c7c85 745 Gene3D G3DSA:3.40.50.300 472 649 2.3E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16855 0424765e62cfe9b1b6780a6ff09de2ad 336 PANTHER PTHR30146:SF60 46 276 5.6E-23 T 23-04-2016 RD1_RS16855 0424765e62cfe9b1b6780a6ff09de2ad 336 PANTHER PTHR30146 46 276 5.6E-23 T 23-04-2016 RD1_RS16855 0424765e62cfe9b1b6780a6ff09de2ad 336 Gene3D G3DSA:3.40.50.2300 157 298 8.8E-10 T 23-04-2016 RD1_RS16855 0424765e62cfe9b1b6780a6ff09de2ad 336 Gene3D G3DSA:3.40.50.2300 47 156 8.4E-17 T 23-04-2016 RD1_RS16855 0424765e62cfe9b1b6780a6ff09de2ad 336 Pfam PF13407 Periplasmic binding protein domain 49 298 1.6E-16 T 23-04-2016 IPR025997 Periplasmic binding protein RD1_RS16855 0424765e62cfe9b1b6780a6ff09de2ad 336 SUPERFAMILY SSF53822 44 299 8.16E-28 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS01910 9b3ba8bc5f73c52dc64dac7ed4c316f3 196 Pfam PF00293 NUDIX domain 37 154 4.6E-16 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RD1_RS01910 9b3ba8bc5f73c52dc64dac7ed4c316f3 196 PANTHER PTHR12992 28 188 4.3E-54 T 23-04-2016 RD1_RS01910 9b3ba8bc5f73c52dc64dac7ed4c316f3 196 Gene3D G3DSA:3.90.79.10 32 192 2.0E-44 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS01910 9b3ba8bc5f73c52dc64dac7ed4c316f3 196 SUPERFAMILY SSF55811 30 188 1.76E-38 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS01850 395b68ad9564bcd86e5fe439653bb9e7 243 PANTHER PTHR11907 12 242 2.8E-37 T 23-04-2016 RD1_RS01850 395b68ad9564bcd86e5fe439653bb9e7 243 Pfam PF00156 Phosphoribosyl transferase domain 143 237 4.4E-7 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RD1_RS01850 395b68ad9564bcd86e5fe439653bb9e7 243 Gene3D G3DSA:3.40.50.2020 63 240 5.1E-25 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS01850 395b68ad9564bcd86e5fe439653bb9e7 243 PANTHER PTHR11907:SF9 12 242 2.8E-37 T 23-04-2016 RD1_RS01850 395b68ad9564bcd86e5fe439653bb9e7 243 SUPERFAMILY SSF53271 64 240 1.06E-29 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS04230 e9fac3de9e313db5fbe3a9ac15e9ef33 311 PANTHER PTHR30477 1 152 9.8E-56 T 23-04-2016 RD1_RS04230 e9fac3de9e313db5fbe3a9ac15e9ef33 311 PANTHER PTHR30477 168 299 9.8E-56 T 23-04-2016 RD1_RS04230 e9fac3de9e313db5fbe3a9ac15e9ef33 311 Gene3D G3DSA:1.10.3470.10 42 260 1.0E-8 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RD1_RS04230 e9fac3de9e313db5fbe3a9ac15e9ef33 311 PANTHER PTHR30477:SF8 1 152 9.8E-56 T 23-04-2016 RD1_RS04230 e9fac3de9e313db5fbe3a9ac15e9ef33 311 PANTHER PTHR30477:SF8 168 299 9.8E-56 T 23-04-2016 RD1_RS04230 e9fac3de9e313db5fbe3a9ac15e9ef33 311 Pfam PF00950 ABC 3 transport family 11 130 1.9E-20 T 23-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 RD1_RS04230 e9fac3de9e313db5fbe3a9ac15e9ef33 311 Pfam PF00950 ABC 3 transport family 156 264 1.4E-19 T 23-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 RD1_RS04230 e9fac3de9e313db5fbe3a9ac15e9ef33 311 SUPERFAMILY SSF81345 5 265 7.45E-27 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RD1_RS10885 64900d76595b468cb72b6df3e991507c 266 Gene3D G3DSA:1.10.3720.10 9 260 7.7E-51 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10885 64900d76595b468cb72b6df3e991507c 266 PANTHER PTHR30222 1 254 9.5E-40 T 23-04-2016 RD1_RS10885 64900d76595b468cb72b6df3e991507c 266 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 252 1.0E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10885 64900d76595b468cb72b6df3e991507c 266 PANTHER PTHR30222:SF6 1 254 9.5E-40 T 23-04-2016 RD1_RS10885 64900d76595b468cb72b6df3e991507c 266 SUPERFAMILY SSF161098 3 261 1.44E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS04235 a88db16dde1d9c56a57c75ea4258e057 405 Pfam PF00950 ABC 3 transport family 19 283 1.7E-55 T 23-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 RD1_RS04235 a88db16dde1d9c56a57c75ea4258e057 405 PANTHER PTHR30477:SF3 5 316 2.9E-75 T 23-04-2016 RD1_RS04235 a88db16dde1d9c56a57c75ea4258e057 405 PANTHER PTHR30477 5 316 2.9E-75 T 23-04-2016 RD1_RS04235 a88db16dde1d9c56a57c75ea4258e057 405 Gene3D G3DSA:1.10.3470.10 21 281 4.0E-10 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RD1_RS04235 a88db16dde1d9c56a57c75ea4258e057 405 SUPERFAMILY SSF81345 20 281 1.83E-27 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RD1_RS05170 c8ffb570b7925428f814ebbe8b2cad54 478 Pfam PF02321 Outer membrane efflux protein 245 424 2.4E-18 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RD1_RS05170 c8ffb570b7925428f814ebbe8b2cad54 478 Pfam PF02321 Outer membrane efflux protein 33 222 9.3E-22 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RD1_RS05170 c8ffb570b7925428f814ebbe8b2cad54 478 PANTHER PTHR30026:SF3 1 431 1.2E-52 T 23-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 RD1_RS05170 c8ffb570b7925428f814ebbe8b2cad54 478 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 30 432 2.1E-70 T 23-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 RD1_RS05170 c8ffb570b7925428f814ebbe8b2cad54 478 SUPERFAMILY SSF56954 4 431 1.29E-69 T 23-04-2016 RD1_RS05170 c8ffb570b7925428f814ebbe8b2cad54 478 PANTHER PTHR30026 1 431 1.2E-52 T 23-04-2016 RD1_RS05170 c8ffb570b7925428f814ebbe8b2cad54 478 Gene3D G3DSA:1.20.1600.10 26 429 9.3E-49 T 23-04-2016 RD1_RS17645 5325e2750496d08123b172b4adcdfcae 209 Gene3D G3DSA:1.10.260.40 22 92 3.0E-20 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS17645 5325e2750496d08123b172b4adcdfcae 209 PANTHER PTHR10245 1 208 4.4E-30 T 23-04-2016 RD1_RS17645 5325e2750496d08123b172b4adcdfcae 209 Pfam PF07883 Cupin domain 141 202 3.5E-10 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RD1_RS17645 5325e2750496d08123b172b4adcdfcae 209 Pfam PF01381 Helix-turn-helix 33 81 3.2E-13 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS17645 5325e2750496d08123b172b4adcdfcae 209 SMART SM00530 28 83 7.5E-13 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS17645 5325e2750496d08123b172b4adcdfcae 209 Gene3D G3DSA:2.60.120.10 113 207 3.1E-26 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS17645 5325e2750496d08123b172b4adcdfcae 209 PANTHER PTHR10245:SF9 1 208 4.4E-30 T 23-04-2016 RD1_RS17645 5325e2750496d08123b172b4adcdfcae 209 SUPERFAMILY SSF51182 76 207 1.95E-24 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS17645 5325e2750496d08123b172b4adcdfcae 209 SUPERFAMILY SSF47413 23 89 1.61E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS18820 944a616ff9157572b7c8cb125ce5b7c1 322 PANTHER PTHR30024:SF13 10 320 6.3E-84 T 23-04-2016 RD1_RS18820 944a616ff9157572b7c8cb125ce5b7c1 322 Gene3D G3DSA:3.40.190.10 118 250 2.2E-39 T 23-04-2016 RD1_RS18820 944a616ff9157572b7c8cb125ce5b7c1 322 Pfam PF16868 NMT1-like family 31 320 1.0E-91 T 23-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RD1_RS18820 944a616ff9157572b7c8cb125ce5b7c1 322 PANTHER PTHR30024 10 320 6.3E-84 T 23-04-2016 RD1_RS18820 944a616ff9157572b7c8cb125ce5b7c1 322 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 5 320 3.0E-104 T 23-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RD1_RS18820 944a616ff9157572b7c8cb125ce5b7c1 322 SUPERFAMILY SSF53850 26 322 1.92E-88 T 23-04-2016 RD1_RS18820 944a616ff9157572b7c8cb125ce5b7c1 322 Gene3D G3DSA:3.40.190.10 251 322 1.6E-59 T 23-04-2016 RD1_RS18820 944a616ff9157572b7c8cb125ce5b7c1 322 Gene3D G3DSA:3.40.190.10 26 109 1.6E-59 T 23-04-2016 RD1_RS06360 121462dfb54c649805f5f4c25a5c79ba 532 Pfam PF01293 Phosphoenolpyruvate carboxykinase 22 484 2.5E-209 T 23-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 RD1_RS06360 121462dfb54c649805f5f4c25a5c79ba 532 Gene3D G3DSA:3.90.228.20 341 529 2.3E-117 T 23-04-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 RD1_RS06360 121462dfb54c649805f5f4c25a5c79ba 532 Gene3D G3DSA:3.90.228.20 215 279 2.3E-117 T 23-04-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 RD1_RS06360 121462dfb54c649805f5f4c25a5c79ba 532 SUPERFAMILY SSF68923 7 214 3.31E-80 T 23-04-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 RD1_RS06360 121462dfb54c649805f5f4c25a5c79ba 532 SUPERFAMILY SSF53795 215 529 5.72E-129 T 23-04-2016 RD1_RS06360 121462dfb54c649805f5f4c25a5c79ba 532 PANTHER PTHR30031:SF0 3 532 1.1E-272 T 23-04-2016 RD1_RS06360 121462dfb54c649805f5f4c25a5c79ba 532 Hamap MF_00453 Phosphoenolpyruvate carboxykinase [ATP] [pckA]. 16 530 52.063 T 23-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 RD1_RS06360 121462dfb54c649805f5f4c25a5c79ba 532 PANTHER PTHR30031 3 532 1.1E-272 T 23-04-2016 RD1_RS06360 121462dfb54c649805f5f4c25a5c79ba 532 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 11 529 2.1E-198 T 23-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 RD1_RS06360 121462dfb54c649805f5f4c25a5c79ba 532 PIRSF PIRSF006294 6 532 1.5E-218 T 23-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 RD1_RS06360 121462dfb54c649805f5f4c25a5c79ba 532 Gene3D G3DSA:3.40.449.10 23 214 3.7E-74 T 23-04-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 RD1_RS12820 a1553575b99fb92ca961277cda20f043 140 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 97 132 9.2E-10 T 23-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RD1_RS12820 a1553575b99fb92ca961277cda20f043 140 SUPERFAMILY SSF57716 99 137 2.42E-7 T 23-04-2016 RD1_RS12820 a1553575b99fb92ca961277cda20f043 140 SUPERFAMILY SSF109635 5 98 3.53E-33 T 23-04-2016 RD1_RS12820 a1553575b99fb92ca961277cda20f043 140 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 20 129 1.8E-42 T 23-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RD1_RS12820 a1553575b99fb92ca961277cda20f043 140 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 102 126 - T 23-04-2016 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RD1_RS12820 a1553575b99fb92ca961277cda20f043 140 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 16 138 27.199 T 23-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RD1_RS12820 a1553575b99fb92ca961277cda20f043 140 PANTHER PTHR33823:SF2 1 135 1.4E-41 T 23-04-2016 RD1_RS12820 a1553575b99fb92ca961277cda20f043 140 PANTHER PTHR33823 1 135 1.4E-41 T 23-04-2016 RD1_RS11060 6a58ac10e4a4507940ca893b1f4fc285 445 Pfam PF01425 Amidase 25 430 7.1E-81 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS11060 6a58ac10e4a4507940ca893b1f4fc285 445 Gene3D G3DSA:3.90.1300.10 6 442 5.0E-107 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS11060 6a58ac10e4a4507940ca893b1f4fc285 445 PANTHER PTHR11895 7 443 1.2E-101 T 23-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS11060 6a58ac10e4a4507940ca893b1f4fc285 445 SUPERFAMILY SSF75304 5 440 2.75E-107 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RD1_RS05480 8f4315080138da458fac7038724236c1 389 Gene3D G3DSA:3.40.50.2300 42 234 9.2E-21 T 23-04-2016 RD1_RS05480 8f4315080138da458fac7038724236c1 389 Pfam PF13458 Periplasmic binding protein 42 372 8.6E-38 T 23-04-2016 IPR028081 Leucine-binding protein domain RD1_RS05480 8f4315080138da458fac7038724236c1 389 SUPERFAMILY SSF53822 43 376 1.54E-49 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS12490 06de1056686664934cd8ccbfc6127023 160 Gene3D G3DSA:3.10.129.10 27 150 2.7E-26 T 23-04-2016 IPR029069 HotDog domain RD1_RS12490 06de1056686664934cd8ccbfc6127023 160 PANTHER PTHR31793 30 150 2.1E-21 T 23-04-2016 RD1_RS12490 06de1056686664934cd8ccbfc6127023 160 SUPERFAMILY SSF54637 27 153 2.01E-27 T 23-04-2016 IPR029069 HotDog domain RD1_RS12490 06de1056686664934cd8ccbfc6127023 160 Pfam PF03061 Thioesterase superfamily 41 122 6.5E-12 T 23-04-2016 IPR006683 Thioesterase domain RD1_RS12490 06de1056686664934cd8ccbfc6127023 160 PANTHER PTHR31793:SF1 30 150 2.1E-21 T 23-04-2016 RD1_RS14590 642c663f5c2664cf8a8ad24b1cf8c817 194 PANTHER PTHR33877 15 194 5.3E-60 T 23-04-2016 RD1_RS14590 642c663f5c2664cf8a8ad24b1cf8c817 194 PANTHER PTHR33877:SF2 15 194 5.3E-60 T 23-04-2016 RD1_RS14590 642c663f5c2664cf8a8ad24b1cf8c817 194 SMART SM00507 90 140 1.7E-11 T 23-04-2016 IPR003615 HNH nuclease RD1_RS14590 642c663f5c2664cf8a8ad24b1cf8c817 194 Pfam PF14279 HNH endonuclease 103 145 5.0E-12 T 23-04-2016 IPR029471 HNH endonuclease 5 RD1_RS01240 e09388a366dbe3ef8ca256a1f2747ea4 97 Gene3D G3DSA:2.30.330.10 16 92 4.1E-19 T 23-04-2016 RD1_RS01240 e09388a366dbe3ef8ca256a1f2747ea4 97 SUPERFAMILY SSF101801 17 92 3.01E-13 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) RD1_RS01240 e09388a366dbe3ef8ca256a1f2747ea4 97 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 19 92 1.2E-18 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) RD1_RS01240 e09388a366dbe3ef8ca256a1f2747ea4 97 PRINTS PR00956 Flagellar motor switch protein FliN signature 63 78 3.0E-10 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RD1_RS01240 e09388a366dbe3ef8ca256a1f2747ea4 97 PRINTS PR00956 Flagellar motor switch protein FliN signature 17 33 3.0E-10 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RD1_RS01240 e09388a366dbe3ef8ca256a1f2747ea4 97 PRINTS PR00956 Flagellar motor switch protein FliN signature 34 50 3.0E-10 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RD1_RS01240 e09388a366dbe3ef8ca256a1f2747ea4 97 PRINTS PR00956 Flagellar motor switch protein FliN signature 50 63 3.0E-10 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RD1_RS16080 38a77969dd01e3c66759592311f4ce95 312 SUPERFAMILY SSF51735 97 281 1.26E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS16080 38a77969dd01e3c66759592311f4ce95 312 SUPERFAMILY SSF52283 3 119 1.15E-28 T 23-04-2016 RD1_RS16080 38a77969dd01e3c66759592311f4ce95 312 Gene3D G3DSA:3.40.50.720 112 282 1.7E-58 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS16080 38a77969dd01e3c66759592311f4ce95 312 Gene3D G3DSA:3.40.50.720 3 111 3.3E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS16080 38a77969dd01e3c66759592311f4ce95 312 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 106 281 4.2E-54 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RD1_RS16080 38a77969dd01e3c66759592311f4ce95 312 PANTHER PTHR10996 1 312 8.0E-107 T 23-04-2016 RD1_RS16080 38a77969dd01e3c66759592311f4ce95 312 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 7 312 6.4E-26 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 RD1_RS11215 13a8e0bc2be9fcdbb4f2764802037a8e 466 PANTHER PTHR23515:SF6 11 379 5.5E-184 T 23-04-2016 RD1_RS11215 13a8e0bc2be9fcdbb4f2764802037a8e 466 PANTHER PTHR23515:SF6 400 463 5.5E-184 T 23-04-2016 RD1_RS11215 13a8e0bc2be9fcdbb4f2764802037a8e 466 Pfam PF07690 Major Facilitator Superfamily 46 422 2.1E-11 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS11215 13a8e0bc2be9fcdbb4f2764802037a8e 466 PANTHER PTHR23515 11 379 5.5E-184 T 23-04-2016 RD1_RS11215 13a8e0bc2be9fcdbb4f2764802037a8e 466 PANTHER PTHR23515 400 463 5.5E-184 T 23-04-2016 RD1_RS11215 13a8e0bc2be9fcdbb4f2764802037a8e 466 Gene3D G3DSA:1.20.1250.20 257 458 1.1E-11 T 23-04-2016 RD1_RS11215 13a8e0bc2be9fcdbb4f2764802037a8e 466 Gene3D G3DSA:1.20.1250.20 36 233 9.4E-11 T 23-04-2016 RD1_RS11215 13a8e0bc2be9fcdbb4f2764802037a8e 466 TIGRFAM TIGR00886 2A0108: nitrite transporter 36 418 5.6E-96 T 23-04-2016 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 RD1_RS11215 13a8e0bc2be9fcdbb4f2764802037a8e 466 SUPERFAMILY SSF103473 17 459 1.57E-35 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS10920 61968ead6e7f4b2263f672d4c13e714b 117 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 11 82 5.8E-11 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS10920 61968ead6e7f4b2263f672d4c13e714b 117 PANTHER PTHR19370 1 86 1.4E-19 T 23-04-2016 RD1_RS10920 61968ead6e7f4b2263f672d4c13e714b 117 PANTHER PTHR19370:SF127 1 86 1.4E-19 T 23-04-2016 RD1_RS10920 61968ead6e7f4b2263f672d4c13e714b 117 SUPERFAMILY SSF54292 3 89 4.31E-21 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RD1_RS10920 61968ead6e7f4b2263f672d4c13e714b 117 Gene3D G3DSA:3.10.20.30 4 92 3.7E-26 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS00485 c427e6ffb14876c532225ae34cc2ed42 72 Pfam PF05398 PufQ cytochrome subunit 1 71 9.6E-37 T 23-04-2016 IPR008800 PufQ cytochrome subunit GO:0015979|GO:0030494 RD1_RS00485 c427e6ffb14876c532225ae34cc2ed42 72 PIRSF PIRSF005825 1 71 3.1E-25 T 23-04-2016 IPR008800 PufQ cytochrome subunit GO:0015979|GO:0030494 RD1_RS18840 c06100c630ed2e467a811d5153ef0531 132 PANTHER PTHR34134 3 125 4.8E-23 T 23-04-2016 RD1_RS18840 c06100c630ed2e467a811d5153ef0531 132 SUPERFAMILY SSF46785 10 127 1.16E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18840 c06100c630ed2e467a811d5153ef0531 132 PANTHER PTHR34134:SF1 3 125 4.8E-23 T 23-04-2016 RD1_RS18840 c06100c630ed2e467a811d5153ef0531 132 Pfam PF03965 Penicillinase repressor 10 123 3.6E-25 T 23-04-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 RD1_RS18840 c06100c630ed2e467a811d5153ef0531 132 Gene3D G3DSA:1.10.10.10 7 83 2.5E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18840 c06100c630ed2e467a811d5153ef0531 132 PIRSF PIRSF019455 2 131 1.0E-31 T 23-04-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 RD1_RS10205 fad13124434ae646539b0083ef43de31 208 SUPERFAMILY SSF52540 21 193 1.56E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10205 fad13124434ae646539b0083ef43de31 208 PANTHER PTHR10285:SF81 8 191 1.5E-47 T 23-04-2016 RD1_RS10205 fad13124434ae646539b0083ef43de31 208 PANTHER PTHR10285 8 191 1.5E-47 T 23-04-2016 RD1_RS10205 fad13124434ae646539b0083ef43de31 208 Pfam PF13238 AAA domain 26 165 7.1E-9 T 23-04-2016 RD1_RS10205 fad13124434ae646539b0083ef43de31 208 Gene3D G3DSA:3.40.50.300 10 203 8.0E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS16960 859396996f8769182f4fe70d44fe3cfb 101 Pfam PF14333 Domain of unknown function (DUF4389) 24 98 1.5E-25 T 23-04-2016 IPR025498 Protein of unknown function DUF4389 RD1_RS06285 098cc4ae0e8fe9567e6e0d2d80e2d1c0 224 PANTHER PTHR40547 9 116 2.1E-17 T 23-04-2016 RD1_RS06285 098cc4ae0e8fe9567e6e0d2d80e2d1c0 224 PANTHER PTHR40547 141 207 2.1E-17 T 23-04-2016 RD1_RS06285 098cc4ae0e8fe9567e6e0d2d80e2d1c0 224 PANTHER PTHR40547:SF1 9 116 2.1E-17 T 23-04-2016 RD1_RS06285 098cc4ae0e8fe9567e6e0d2d80e2d1c0 224 PANTHER PTHR40547:SF1 141 207 2.1E-17 T 23-04-2016 RD1_RS06285 098cc4ae0e8fe9567e6e0d2d80e2d1c0 224 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 27 193 2.3E-42 T 23-04-2016 IPR018639 Domain of unknown function DUF2062 RD1_RS14740 822d3b39368eae19d089a4ba552a5c50 218 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 51 60 - T 23-04-2016 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 RD1_RS14740 822d3b39368eae19d089a4ba552a5c50 218 Gene3D G3DSA:3.40.470.10 25 212 1.4E-75 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS14740 822d3b39368eae19d089a4ba552a5c50 218 SMART SM00986 43 201 2.1E-31 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS14740 822d3b39368eae19d089a4ba552a5c50 218 SMART SM00987 43 201 2.1E-31 T 23-04-2016 RD1_RS14740 822d3b39368eae19d089a4ba552a5c50 218 PANTHER PTHR11264 20 215 1.3E-80 T 23-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 RD1_RS14740 822d3b39368eae19d089a4ba552a5c50 218 SUPERFAMILY SSF52141 3 212 2.62E-69 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS14740 822d3b39368eae19d089a4ba552a5c50 218 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 4 212 33.42 T 23-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 RD1_RS14740 822d3b39368eae19d089a4ba552a5c50 218 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 29 205 5.6E-62 T 23-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 RD1_RS14740 822d3b39368eae19d089a4ba552a5c50 218 Pfam PF03167 Uracil DNA glycosylase superfamily 46 201 3.1E-23 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RD1_RS03920 6a1884f19156cf1145c4419611241db2 187 PANTHER PTHR34109 2 141 5.3E-17 T 23-04-2016 RD1_RS03920 6a1884f19156cf1145c4419611241db2 187 PANTHER PTHR34109:SF1 2 141 5.3E-17 T 23-04-2016 RD1_RS03920 6a1884f19156cf1145c4419611241db2 187 Gene3D G3DSA:3.10.180.10 15 129 1.9E-15 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS03920 6a1884f19156cf1145c4419611241db2 187 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 21 126 5.1E-5 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RD1_RS03920 6a1884f19156cf1145c4419611241db2 187 SUPERFAMILY SSF54593 19 139 5.64E-18 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RD1_RS01805 6f93702bba98eaeec31eabdb924fa751 206 PANTHER PTHR34215 14 144 2.6E-22 T 23-04-2016 RD1_RS01805 6f93702bba98eaeec31eabdb924fa751 206 SUPERFAMILY SSF55315 97 172 4.24E-8 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like RD1_RS01805 6f93702bba98eaeec31eabdb924fa751 206 Pfam PF04296 Protein of unknown function (DUF448) 16 91 3.5E-21 T 23-04-2016 IPR007393 Domain of unknown function DUF448 RD1_RS01805 6f93702bba98eaeec31eabdb924fa751 206 SUPERFAMILY SSF64376 13 100 1.44E-25 T 23-04-2016 IPR007393 Domain of unknown function DUF448 RD1_RS01805 6f93702bba98eaeec31eabdb924fa751 206 PANTHER PTHR34215:SF1 14 144 2.6E-22 T 23-04-2016 RD1_RS01805 6f93702bba98eaeec31eabdb924fa751 206 Gene3D G3DSA:3.30.1230.10 12 100 2.3E-29 T 23-04-2016 IPR007393 Domain of unknown function DUF448 RD1_RS02965 1132e31ca69dfbc6e07ac8fb6595b60e 193 Pfam PF07799 Protein of unknown function (DUF1643) 37 174 8.5E-28 T 23-04-2016 IPR012441 Protein of unknown function DUF1643 RD1_RS07195 30aded8b82978261f3cf618aa481015a 163 SUPERFAMILY SSF81452 1 163 5.49E-38 T 23-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RD1_RS07195 30aded8b82978261f3cf618aa481015a 163 Gene3D G3DSA:1.20.120.80 1 162 1.2E-34 T 23-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 RD1_RS07195 30aded8b82978261f3cf618aa481015a 163 PANTHER PTHR11403 1 163 5.3E-42 T 23-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 RD1_RS07195 30aded8b82978261f3cf618aa481015a 163 Pfam PF00510 Cytochrome c oxidase subunit III 39 162 2.1E-10 T 23-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RD1_RS07195 30aded8b82978261f3cf618aa481015a 163 PANTHER PTHR11403:SF6 1 163 5.3E-42 T 23-04-2016 RD1_RS00995 09bb4ad9495d8b9c8fbbe0f50045b51b 411 SMART SM00729 59 286 7.3E-4 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RD1_RS00995 09bb4ad9495d8b9c8fbbe0f50045b51b 411 SUPERFAMILY SSF47781 305 382 2.56E-11 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RD1_RS00995 09bb4ad9495d8b9c8fbbe0f50045b51b 411 SUPERFAMILY SSF102114 48 198 4.45E-16 T 23-04-2016 RD1_RS00995 09bb4ad9495d8b9c8fbbe0f50045b51b 411 PANTHER PTHR21180 137 408 1.4E-116 T 23-04-2016 RD1_RS00995 09bb4ad9495d8b9c8fbbe0f50045b51b 411 Gene3D G3DSA:3.20.20.70 6 199 6.8E-13 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS00995 09bb4ad9495d8b9c8fbbe0f50045b51b 411 PANTHER PTHR21180:SF9 137 408 1.4E-116 T 23-04-2016 IPR023874 DNA modification/repair radical SAM protein, putative RD1_RS00995 09bb4ad9495d8b9c8fbbe0f50045b51b 411 Pfam PF04055 Radical SAM superfamily 65 198 1.9E-10 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RD1_RS00995 09bb4ad9495d8b9c8fbbe0f50045b51b 411 TIGRFAM TIGR03916 rSAM_link_UDG: putative DNA modification/repair radical SAM protein 6 401 1.0E-174 T 23-04-2016 IPR023874 DNA modification/repair radical SAM protein, putative RD1_RS12220 d23629b647a5174dbaccbdd3f7ce1a17 273 Pfam PF01553 Acyltransferase 89 187 1.7E-19 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RD1_RS12220 d23629b647a5174dbaccbdd3f7ce1a17 273 SMART SM00563 91 206 4.3E-27 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RD1_RS12220 d23629b647a5174dbaccbdd3f7ce1a17 273 Gene3D G3DSA:3.40.1130.10 90 203 2.9E-6 T 23-04-2016 RD1_RS12220 d23629b647a5174dbaccbdd3f7ce1a17 273 PANTHER PTHR10434 20 184 5.1E-21 T 23-04-2016 RD1_RS12220 d23629b647a5174dbaccbdd3f7ce1a17 273 SUPERFAMILY SSF69593 59 253 2.75E-20 T 23-04-2016 RD1_RS00380 56897e86939538ba82c2d4a17ee93023 574 Pfam PF07568 Histidine kinase 373 446 2.8E-24 T 23-04-2016 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain RD1_RS00380 56897e86939538ba82c2d4a17ee93023 574 PANTHER PTHR24423:SF472 30 39 1.6E-17 T 23-04-2016 RD1_RS00380 56897e86939538ba82c2d4a17ee93023 574 PANTHER PTHR24423:SF472 356 567 1.6E-17 T 23-04-2016 RD1_RS00380 56897e86939538ba82c2d4a17ee93023 574 Gene3D G3DSA:3.30.565.10 426 564 9.9E-4 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS00380 56897e86939538ba82c2d4a17ee93023 574 SUPERFAMILY SSF55874 445 565 9.83E-7 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS00380 56897e86939538ba82c2d4a17ee93023 574 PANTHER PTHR24423 30 39 1.6E-17 T 23-04-2016 RD1_RS00380 56897e86939538ba82c2d4a17ee93023 574 PANTHER PTHR24423 356 567 1.6E-17 T 23-04-2016 RD1_RS00380 56897e86939538ba82c2d4a17ee93023 574 SMART SM00387 469 568 0.0024 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RD1_RS00380 56897e86939538ba82c2d4a17ee93023 574 Gene3D G3DSA:3.30.450.20 87 178 5.3E-5 T 23-04-2016 RD1_RS10590 a84ae5729c8a93af3c3e5e7945088fbb 367 SUPERFAMILY SSF55811 185 361 1.62E-36 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS10590 a84ae5729c8a93af3c3e5e7945088fbb 367 PANTHER PTHR11839 186 366 2.4E-40 T 23-04-2016 RD1_RS10590 a84ae5729c8a93af3c3e5e7945088fbb 367 PANTHER PTHR11839:SF5 186 366 2.4E-40 T 23-04-2016 RD1_RS10590 a84ae5729c8a93af3c3e5e7945088fbb 367 Gene3D G3DSA:3.90.79.10 185 362 5.5E-42 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS10590 a84ae5729c8a93af3c3e5e7945088fbb 367 Pfam PF00293 NUDIX domain 216 336 3.9E-12 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RD1_RS10590 a84ae5729c8a93af3c3e5e7945088fbb 367 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 183 357 7.6E-32 T 23-04-2016 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 RD1_RS10590 a84ae5729c8a93af3c3e5e7945088fbb 367 ProSitePatterns PS00893 Nudix box signature. 256 277 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RD1_RS07515 b6ae1ff5e91f1b5075493345497b5e6f 123 SUPERFAMILY SSF81343 12 120 7.63E-23 T 23-04-2016 RD1_RS07515 b6ae1ff5e91f1b5075493345497b5e6f 123 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 16 117 3.2E-14 T 23-04-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 RD1_RS07515 b6ae1ff5e91f1b5075493345497b5e6f 123 Gene3D G3DSA:1.20.1300.10 12 118 9.0E-19 T 23-04-2016 RD1_RS07515 b6ae1ff5e91f1b5075493345497b5e6f 123 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 7 107 4.0E-12 T 23-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 RD1_RS03665 0bf532d55dec0509591aee03e044ddfa 368 Pfam PF14072 DNA-sulfur modification-associated 8 344 2.4E-108 T 23-04-2016 IPR017642 DNA sulphur modification protein DndB RD1_RS03665 0bf532d55dec0509591aee03e044ddfa 368 TIGRFAM TIGR03187 DGQHR: DGQHR domain 10 286 6.6E-81 T 23-04-2016 IPR017601 DGQHR-containing domain RD1_RS03665 0bf532d55dec0509591aee03e044ddfa 368 TIGRFAM TIGR03233 DNA_S_dndB: DNA sulfur modification protein DndB 6 357 9.6E-124 T 23-04-2016 IPR017642 DNA sulphur modification protein DndB RD1_RS03830 58e56b10138790ffa14f5daf91086bbf 446 PIRSF PIRSF006066 4 446 2.3E-130 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS03830 58e56b10138790ffa14f5daf91086bbf 446 PANTHER PTHR33362:SF2 183 445 2.6E-120 T 23-04-2016 RD1_RS03830 58e56b10138790ffa14f5daf91086bbf 446 PANTHER PTHR33362:SF2 6 167 2.6E-120 T 23-04-2016 RD1_RS03830 58e56b10138790ffa14f5daf91086bbf 446 PANTHER PTHR33362 183 445 2.6E-120 T 23-04-2016 RD1_RS03830 58e56b10138790ffa14f5daf91086bbf 446 PANTHER PTHR33362 6 167 2.6E-120 T 23-04-2016 RD1_RS03830 58e56b10138790ffa14f5daf91086bbf 446 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 10 436 9.2E-103 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS03830 58e56b10138790ffa14f5daf91086bbf 446 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 20 441 5.1E-117 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS02710 edb737200d6f27a6ffd9d92aaa1a1deb 430 PANTHER PTHR11098:SF16 1 423 1.1E-133 T 23-04-2016 RD1_RS02710 edb737200d6f27a6ffd9d92aaa1a1deb 430 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 15 422 34.99 T 23-04-2016 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 RD1_RS02710 edb737200d6f27a6ffd9d92aaa1a1deb 430 Gene3D G3DSA:3.20.140.10 2 405 7.5E-142 T 23-04-2016 RD1_RS02710 edb737200d6f27a6ffd9d92aaa1a1deb 430 PANTHER PTHR11098 1 423 1.1E-133 T 23-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 RD1_RS02710 edb737200d6f27a6ffd9d92aaa1a1deb 430 SUPERFAMILY SSF51690 137 418 5.69E-82 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 RD1_RS02710 edb737200d6f27a6ffd9d92aaa1a1deb 430 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 18 416 4.3E-83 T 23-04-2016 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 RD1_RS02710 edb737200d6f27a6ffd9d92aaa1a1deb 430 PIRSF PIRSF000484 8 429 8.2E-55 T 23-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 RD1_RS02710 edb737200d6f27a6ffd9d92aaa1a1deb 430 SUPERFAMILY SSF54675 2 154 1.81E-44 T 23-04-2016 RD1_RS02710 edb737200d6f27a6ffd9d92aaa1a1deb 430 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 188 421 4.4E-61 T 23-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 RD1_RS06755 839e44a661adb185eb18ae36d48ed7c8 78 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 4 72 22.592 T 23-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RD1_RS06755 839e44a661adb185eb18ae36d48ed7c8 78 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 12 77 5.5E-27 T 23-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RD1_RS06755 839e44a661adb185eb18ae36d48ed7c8 78 PANTHER PTHR33383 12 74 8.2E-30 T 23-04-2016 RD1_RS06755 839e44a661adb185eb18ae36d48ed7c8 78 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 18 71 8.0E-20 T 23-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RD1_RS06755 839e44a661adb185eb18ae36d48ed7c8 78 Pfam PF01809 Haemolytic domain 7 71 1.7E-27 T 23-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RD1_RS06755 839e44a661adb185eb18ae36d48ed7c8 78 SMART SM01234 4 71 2.2E-37 T 23-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RD1_RS02480 af1459cf4d77160d27d3a3e991664ebe 225 SUPERFAMILY SSF51182 119 213 2.07E-15 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS02480 af1459cf4d77160d27d3a3e991664ebe 225 Gene3D G3DSA:2.60.120.10 134 208 1.2E-4 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS02480 af1459cf4d77160d27d3a3e991664ebe 225 Gene3D G3DSA:2.60.120.10 16 127 8.2E-47 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS02480 af1459cf4d77160d27d3a3e991664ebe 225 Pfam PF12973 ChrR Cupin-like domain 19 109 7.9E-41 T 23-04-2016 IPR025979 ChrR-like cupin domain RD1_RS02480 af1459cf4d77160d27d3a3e991664ebe 225 SUPERFAMILY SSF51182 3 128 2.22E-39 T 23-04-2016 IPR011051 RmlC-like cupin domain RD1_RS15160 488971818cb63685686d9233b28a6b99 201 Pfam PF03922 OmpW family 26 201 4.8E-42 T 23-04-2016 IPR005618 Outer membrane protein, OmpW GO:0019867 RD1_RS15160 488971818cb63685686d9233b28a6b99 201 PANTHER PTHR36920:SF1 1 201 4.9E-60 T 23-04-2016 RD1_RS15160 488971818cb63685686d9233b28a6b99 201 SUPERFAMILY SSF56925 25 201 9.16E-28 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RD1_RS15160 488971818cb63685686d9233b28a6b99 201 PANTHER PTHR36920 1 201 4.9E-60 T 23-04-2016 RD1_RS15160 488971818cb63685686d9233b28a6b99 201 Gene3D G3DSA:2.40.160.20 24 201 6.5E-52 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RD1_RS16275 1ff112266c44a3924988f65a9e8e5a35 186 Pfam PF00213 ATP synthase delta (OSCP) subunit 11 182 5.6E-47 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RD1_RS16275 1ff112266c44a3924988f65a9e8e5a35 186 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 11 181 2.0E-38 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RD1_RS16275 1ff112266c44a3924988f65a9e8e5a35 186 SUPERFAMILY SSF47928 8 112 1.83E-19 T 23-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain RD1_RS16275 1ff112266c44a3924988f65a9e8e5a35 186 Gene3D G3DSA:1.10.520.20 9 113 2.4E-20 T 23-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain RD1_RS16275 1ff112266c44a3924988f65a9e8e5a35 186 Hamap MF_01416 ATP synthase subunit delta [atpD]. 7 184 18.877 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RD1_RS16275 1ff112266c44a3924988f65a9e8e5a35 186 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 144 163 - T 23-04-2016 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 RD1_RS16275 1ff112266c44a3924988f65a9e8e5a35 186 PANTHER PTHR11910 10 186 3.1E-50 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RD1_RS16275 1ff112266c44a3924988f65a9e8e5a35 186 PRINTS PR00125 ATP synthase delta subunit signature 92 106 2.5E-26 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RD1_RS16275 1ff112266c44a3924988f65a9e8e5a35 186 PRINTS PR00125 ATP synthase delta subunit signature 81 92 2.5E-26 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RD1_RS16275 1ff112266c44a3924988f65a9e8e5a35 186 PRINTS PR00125 ATP synthase delta subunit signature 157 175 2.5E-26 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RD1_RS16275 1ff112266c44a3924988f65a9e8e5a35 186 PRINTS PR00125 ATP synthase delta subunit signature 11 30 2.5E-26 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RD1_RS16275 1ff112266c44a3924988f65a9e8e5a35 186 PRINTS PR00125 ATP synthase delta subunit signature 142 157 2.5E-26 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RD1_RS06150 2b8400dc2bfc293c8782419f82269f48 128 Gene3D G3DSA:3.40.50.2300 1 116 9.3E-13 T 23-04-2016 RD1_RS06150 2b8400dc2bfc293c8782419f82269f48 128 Pfam PF00072 Response regulator receiver domain 3 82 1.4E-6 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS06150 2b8400dc2bfc293c8782419f82269f48 128 SUPERFAMILY SSF52172 1 116 1.57E-14 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS07550 8b9e359b667df74e96b168d15e0bf0f0 234 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 1 234 42.452 T 23-04-2016 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 RD1_RS07550 8b9e359b667df74e96b168d15e0bf0f0 234 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 61 76 - T 23-04-2016 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 RD1_RS07550 8b9e359b667df74e96b168d15e0bf0f0 234 PANTHER PTHR21234:SF8 1 234 5.1E-58 T 23-04-2016 RD1_RS07550 8b9e359b667df74e96b168d15e0bf0f0 234 Pfam PF01048 Phosphorylase superfamily 16 228 1.7E-39 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RD1_RS07550 8b9e359b667df74e96b168d15e0bf0f0 234 Gene3D G3DSA:3.40.50.1580 8 232 4.0E-74 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RD1_RS07550 8b9e359b667df74e96b168d15e0bf0f0 234 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 4 232 1.2E-90 T 23-04-2016 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 RD1_RS07550 8b9e359b667df74e96b168d15e0bf0f0 234 SUPERFAMILY SSF53167 1 233 1.7E-87 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RD1_RS07550 8b9e359b667df74e96b168d15e0bf0f0 234 PANTHER PTHR21234 1 234 5.1E-58 T 23-04-2016 IPR018017 Nucleoside phosphorylase RD1_RS16160 e662cf8833a62e4ba6c316d67c5bff09 365 PANTHER PTHR11271 140 347 1.0E-17 T 23-04-2016 RD1_RS16160 e662cf8833a62e4ba6c316d67c5bff09 365 PANTHER PTHR11271 22 121 1.0E-17 T 23-04-2016 RD1_RS16160 e662cf8833a62e4ba6c316d67c5bff09 365 Gene3D G3DSA:2.30.40.10 293 332 7.3E-9 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS16160 e662cf8833a62e4ba6c316d67c5bff09 365 SUPERFAMILY SSF51338 322 359 1.04E-8 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS16160 e662cf8833a62e4ba6c316d67c5bff09 365 SUPERFAMILY SSF51338 8 31 1.04E-8 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS16160 e662cf8833a62e4ba6c316d67c5bff09 365 Gene3D G3DSA:2.30.40.10 17 25 4.8E-6 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS16160 e662cf8833a62e4ba6c316d67c5bff09 365 Gene3D G3DSA:2.30.40.10 333 351 4.8E-6 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS16160 e662cf8833a62e4ba6c316d67c5bff09 365 Pfam PF07969 Amidohydrolase family 176 345 6.3E-9 T 23-04-2016 IPR013108 Amidohydrolase 3 RD1_RS16160 e662cf8833a62e4ba6c316d67c5bff09 365 SUPERFAMILY SSF51556 31 321 1.9E-10 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS16160 e662cf8833a62e4ba6c316d67c5bff09 365 PANTHER PTHR11271:SF43 140 347 1.0E-17 T 23-04-2016 RD1_RS16160 e662cf8833a62e4ba6c316d67c5bff09 365 PANTHER PTHR11271:SF43 22 121 1.0E-17 T 23-04-2016 RD1_RS16160 e662cf8833a62e4ba6c316d67c5bff09 365 PIRSF PIRSF038971 3 353 4.5E-83 T 23-04-2016 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399 RD1_RS16160 e662cf8833a62e4ba6c316d67c5bff09 365 Gene3D G3DSA:2.30.40.10 26 88 2.8E-4 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RD1_RS16860 eb6a0ec8e9fa7f6edb9a19986328945e 321 Pfam PF04143 Sulphur transport 22 310 4.0E-20 T 23-04-2016 IPR007272 Sulphur transport domain RD1_RS10815 f1e66b0d72edfb506d5a0ed8a2b5b27f 194 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 71 93 - T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RD1_RS10815 f1e66b0d72edfb506d5a0ed8a2b5b27f 194 Pfam PF01066 CDP-alcohol phosphatidyltransferase 30 93 3.8E-10 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RD1_RS11970 3ff2ef970bed0feea840126ce76a2c57 92 SUPERFAMILY SSF48295 1 91 1.62E-24 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RD1_RS11970 3ff2ef970bed0feea840126ce76a2c57 92 Pfam PF06627 Protein of unknown function (DUF1153) 4 90 8.8E-38 T 23-04-2016 IPR009534 Protein of unknown function DUF1153 RD1_RS11970 3ff2ef970bed0feea840126ce76a2c57 92 Gene3D G3DSA:1.10.10.10 11 92 4.6E-36 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11450 54aab69e3425118accc414515532bc5d 367 SUPERFAMILY SSF56672 108 204 4.23E-10 T 23-04-2016 RD1_RS11450 54aab69e3425118accc414515532bc5d 367 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 51 198 2.2E-12 T 23-04-2016 IPR000477 Reverse transcriptase domain RD1_RS14490 42a2ad98153cbc11f6e1155f8f19cdf4 158 Pfam PF04355 SmpA / OmlA family 38 113 3.6E-13 T 23-04-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 RD1_RS01880 7994e3951f2413c33505b5869cf0d153 166 SUPERFAMILY SSF141523 34 162 1.7E-22 T 23-04-2016 RD1_RS01880 7994e3951f2413c33505b5869cf0d153 166 Pfam PF03734 L,D-transpeptidase catalytic domain 35 162 8.4E-17 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RD1_RS01880 7994e3951f2413c33505b5869cf0d153 166 PANTHER PTHR36699 25 162 5.6E-43 T 23-04-2016 RD1_RS01880 7994e3951f2413c33505b5869cf0d153 166 Gene3D G3DSA:2.40.440.10 32 163 1.6E-19 T 23-04-2016 RD1_RS09795 8720a0dd2dd86f28d2a06bd04d8f99e7 411 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 159 344 1.7E-14 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RD1_RS09795 8720a0dd2dd86f28d2a06bd04d8f99e7 411 PANTHER PTHR13696 83 411 2.0E-19 T 23-04-2016 RD1_RS09795 8720a0dd2dd86f28d2a06bd04d8f99e7 411 Gene3D G3DSA:3.40.50.300 155 401 8.7E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09795 8720a0dd2dd86f28d2a06bd04d8f99e7 411 SUPERFAMILY SSF52540 158 402 1.53E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09795 8720a0dd2dd86f28d2a06bd04d8f99e7 411 Gene3D G3DSA:3.40.50.2300 80 140 1.6E-4 T 23-04-2016 RD1_RS18590 4cd73b8259a41206b03dff83f5328c8c 360 SUPERFAMILY SSF55681 17 168 1.87E-40 T 23-04-2016 RD1_RS18590 4cd73b8259a41206b03dff83f5328c8c 360 SUPERFAMILY SSF55681 227 356 1.87E-40 T 23-04-2016 RD1_RS18590 4cd73b8259a41206b03dff83f5328c8c 360 Pfam PF13393 Histidyl-tRNA synthetase 13 347 1.7E-31 T 23-04-2016 RD1_RS18590 4cd73b8259a41206b03dff83f5328c8c 360 PANTHER PTHR11476:SF5 18 172 1.6E-31 T 23-04-2016 RD1_RS18590 4cd73b8259a41206b03dff83f5328c8c 360 PANTHER PTHR11476:SF5 228 345 1.6E-31 T 23-04-2016 RD1_RS18590 4cd73b8259a41206b03dff83f5328c8c 360 Gene3D G3DSA:3.30.930.10 268 353 1.1E-42 T 23-04-2016 RD1_RS18590 4cd73b8259a41206b03dff83f5328c8c 360 Gene3D G3DSA:3.30.930.10 228 229 1.1E-42 T 23-04-2016 RD1_RS18590 4cd73b8259a41206b03dff83f5328c8c 360 Gene3D G3DSA:3.30.930.10 16 161 1.1E-42 T 23-04-2016 RD1_RS18590 4cd73b8259a41206b03dff83f5328c8c 360 PANTHER PTHR11476 18 172 1.6E-31 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RD1_RS18590 4cd73b8259a41206b03dff83f5328c8c 360 PANTHER PTHR11476 228 345 1.6E-31 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RD1_RS02640 06fa152ea145ef363c12c0cc9670cf6f 388 PANTHER PTHR30244 1 380 3.5E-138 T 23-04-2016 RD1_RS02640 06fa152ea145ef363c12c0cc9670cf6f 388 PIRSF PIRSF000390 1 380 1.1E-97 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RD1_RS02640 06fa152ea145ef363c12c0cc9670cf6f 388 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 17 373 5.3E-86 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RD1_RS02640 06fa152ea145ef363c12c0cc9670cf6f 388 Gene3D G3DSA:3.90.1150.10 254 378 7.7E-25 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS02640 06fa152ea145ef363c12c0cc9670cf6f 388 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 5 376 4.1E-156 T 23-04-2016 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315|UniPathway: UPA00566 RD1_RS02640 06fa152ea145ef363c12c0cc9670cf6f 388 PANTHER PTHR30244:SF14 1 380 3.5E-138 T 23-04-2016 RD1_RS02640 06fa152ea145ef363c12c0cc9670cf6f 388 SUPERFAMILY SSF53383 4 377 2.55E-91 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS02640 06fa152ea145ef363c12c0cc9670cf6f 388 Gene3D G3DSA:3.40.640.10 5 250 1.8E-66 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS04355 443e30da8e4dba12e0abd87ef690b28a 162 Pfam PF08534 Redoxin 5 157 3.9E-34 T 23-04-2016 IPR013740 Redoxin GO:0016491 RD1_RS04355 443e30da8e4dba12e0abd87ef690b28a 162 Gene3D G3DSA:3.40.30.10 1 161 7.2E-56 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS04355 443e30da8e4dba12e0abd87ef690b28a 162 PANTHER PTHR10430 1 160 2.2E-67 T 23-04-2016 RD1_RS04355 443e30da8e4dba12e0abd87ef690b28a 162 SUPERFAMILY SSF52833 1 159 1.08E-34 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS10260 475c4dad19cefbdf810728f93365a409 314 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 21 66 1.2E-10 T 23-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RD1_RS10260 475c4dad19cefbdf810728f93365a409 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 314 9.5E-26 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10260 475c4dad19cefbdf810728f93365a409 314 PANTHER PTHR30465:SF67 10 314 2.4E-137 T 23-04-2016 RD1_RS10260 475c4dad19cefbdf810728f93365a409 314 PANTHER PTHR30465 10 314 2.4E-137 T 23-04-2016 RD1_RS10260 475c4dad19cefbdf810728f93365a409 314 SUPERFAMILY SSF161098 97 297 1.96E-24 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10260 475c4dad19cefbdf810728f93365a409 314 Gene3D G3DSA:1.10.3720.10 93 311 7.4E-27 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08770 c1eea87f3508c3e73f1e0f0cbb122013 278 SUPERFAMILY SSF161098 120 247 8.37E-28 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08770 c1eea87f3508c3e73f1e0f0cbb122013 278 SUPERFAMILY SSF161098 13 80 8.37E-28 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08770 c1eea87f3508c3e73f1e0f0cbb122013 278 Gene3D G3DSA:1.10.3720.10 12 80 4.9E-31 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08770 c1eea87f3508c3e73f1e0f0cbb122013 278 Gene3D G3DSA:1.10.3720.10 120 261 4.9E-31 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08770 c1eea87f3508c3e73f1e0f0cbb122013 278 PANTHER PTHR30133 30 103 2.3E-34 T 23-04-2016 RD1_RS08770 c1eea87f3508c3e73f1e0f0cbb122013 278 PANTHER PTHR30133 121 270 2.3E-34 T 23-04-2016 RD1_RS08770 c1eea87f3508c3e73f1e0f0cbb122013 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 262 7.2E-17 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS20275 37d62321040abe6bdab6309f6ec8413a 183 Pfam PF00909 Ammonium Transporter Family 4 160 4.1E-23 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RD1_RS20275 37d62321040abe6bdab6309f6ec8413a 183 PANTHER PTHR11730:SF6 14 129 4.1E-17 T 23-04-2016 RD1_RS20275 37d62321040abe6bdab6309f6ec8413a 183 SUPERFAMILY SSF111352 4 173 2.22E-30 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RD1_RS20275 37d62321040abe6bdab6309f6ec8413a 183 PANTHER PTHR11730 14 129 4.1E-17 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RD1_RS20275 37d62321040abe6bdab6309f6ec8413a 183 Gene3D G3DSA:1.10.3430.10 4 173 6.5E-31 T 23-04-2016 IPR029020 Ammonium/urea transporter RD1_RS18920 cf8288c4ce12e9dac763233a029ef53b 138 Pfam PF01042 Endoribonuclease L-PSP 31 135 9.9E-19 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family RD1_RS18920 cf8288c4ce12e9dac763233a029ef53b 138 Gene3D G3DSA:3.30.1330.40 4 137 6.4E-37 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RD1_RS18920 cf8288c4ce12e9dac763233a029ef53b 138 SUPERFAMILY SSF55298 12 137 4.56E-27 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RD1_RS18920 cf8288c4ce12e9dac763233a029ef53b 138 PANTHER PTHR11803 26 138 6.7E-24 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family RD1_RS01590 4add6eca57a8423b6ae4fc3dc9573ce4 254 SUPERFAMILY SSF52540 34 82 1.05E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01590 4add6eca57a8423b6ae4fc3dc9573ce4 254 SUPERFAMILY SSF52540 109 250 1.05E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01590 4add6eca57a8423b6ae4fc3dc9573ce4 254 Pfam PF13401 AAA domain 25 158 1.1E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS01590 4add6eca57a8423b6ae4fc3dc9573ce4 254 Gene3D G3DSA:3.40.50.300 34 207 5.4E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05015 b3f602c5fdb6a04f0b0089b4c443b5b9 194 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 182 1.6E-38 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RD1_RS05015 b3f602c5fdb6a04f0b0089b4c443b5b9 194 SUPERFAMILY SSF53254 1 182 1.97E-41 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RD1_RS05015 b3f602c5fdb6a04f0b0089b4c443b5b9 194 PIRSF PIRSF000709 3 185 1.6E-11 T 23-04-2016 RD1_RS05015 b3f602c5fdb6a04f0b0089b4c443b5b9 194 PANTHER PTHR23029 1 149 2.9E-24 T 23-04-2016 RD1_RS05015 b3f602c5fdb6a04f0b0089b4c443b5b9 194 SMART SM00855 3 148 5.3E-18 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RD1_RS05015 b3f602c5fdb6a04f0b0089b4c443b5b9 194 Gene3D G3DSA:3.40.50.1240 1 184 2.9E-39 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RD1_RS05015 b3f602c5fdb6a04f0b0089b4c443b5b9 194 PANTHER PTHR23029:SF1 1 149 2.9E-24 T 23-04-2016 RD1_RS16600 7c13aac55ff3ad37b29678e7d24c00d4 324 PANTHER PTHR33376 1 310 1.0E-47 T 23-04-2016 RD1_RS16600 7c13aac55ff3ad37b29678e7d24c00d4 324 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 32 286 5.6E-51 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS03230 889d5e3e985e476a1649bf3ca8394f69 272 PANTHER PTHR24220 22 127 1.8E-126 T 23-04-2016 RD1_RS03230 889d5e3e985e476a1649bf3ca8394f69 272 PANTHER PTHR24220 143 268 1.8E-126 T 23-04-2016 RD1_RS03230 889d5e3e985e476a1649bf3ca8394f69 272 SMART SM00382 45 246 2.3E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS03230 889d5e3e985e476a1649bf3ca8394f69 272 Pfam PF00005 ABC transporter 37 197 5.2E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS03230 889d5e3e985e476a1649bf3ca8394f69 272 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 246 268 2.1E-10 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD1_RS03230 889d5e3e985e476a1649bf3ca8394f69 272 Gene3D G3DSA:3.40.50.300 19 267 5.2E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03230 889d5e3e985e476a1649bf3ca8394f69 272 SUPERFAMILY SSF52540 20 268 3.3E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03230 889d5e3e985e476a1649bf3ca8394f69 272 PANTHER PTHR24220:SF519 22 127 1.8E-126 T 23-04-2016 RD1_RS03230 889d5e3e985e476a1649bf3ca8394f69 272 PANTHER PTHR24220:SF519 143 268 1.8E-126 T 23-04-2016 RD1_RS15800 d508f0c47ff5011393bfdef97deec7a9 330 Pfam PF00107 Zinc-binding dehydrogenase 160 272 1.1E-16 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RD1_RS15800 d508f0c47ff5011393bfdef97deec7a9 330 PANTHER PTHR11695 16 328 1.1E-64 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RD1_RS15800 d508f0c47ff5011393bfdef97deec7a9 330 SUPERFAMILY SSF51735 121 293 2.02E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15800 d508f0c47ff5011393bfdef97deec7a9 330 SUPERFAMILY SSF50129 1 155 1.67E-27 T 23-04-2016 IPR011032 GroES-like RD1_RS15800 d508f0c47ff5011393bfdef97deec7a9 330 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 91 4.2E-5 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RD1_RS15800 d508f0c47ff5011393bfdef97deec7a9 330 Gene3D G3DSA:3.40.50.720 158 266 2.3E-23 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15800 d508f0c47ff5011393bfdef97deec7a9 330 SMART SM00829 12 326 1.1E-9 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RD1_RS15800 d508f0c47ff5011393bfdef97deec7a9 330 Gene3D G3DSA:3.90.180.10 1 157 2.9E-34 T 23-04-2016 IPR011032 GroES-like RD1_RS14125 ec40ea6977a5a7484648d25012953c1d 88 SUPERFAMILY SSF47413 11 63 5.91E-10 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS14125 ec40ea6977a5a7484648d25012953c1d 88 Pfam PF01381 Helix-turn-helix 17 62 2.9E-7 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS14125 ec40ea6977a5a7484648d25012953c1d 88 Gene3D G3DSA:1.10.260.40 3 65 2.0E-22 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS14125 ec40ea6977a5a7484648d25012953c1d 88 SMART SM00530 16 74 3.0E-4 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS02570 2714fdc719a977817907919667774d33 118 Gene3D G3DSA:3.10.450.50 4 107 9.3E-14 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS02570 2714fdc719a977817907919667774d33 118 Pfam PF12680 SnoaL-like domain 9 87 2.1E-9 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RD1_RS02570 2714fdc719a977817907919667774d33 118 SUPERFAMILY SSF54427 2 108 4.83E-15 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS00320 16e81b0e377cf71d9c2bac26f1584d2d 214 PANTHER PTHR32479:SF11 116 214 2.6E-17 T 23-04-2016 RD1_RS00320 16e81b0e377cf71d9c2bac26f1584d2d 214 Pfam PF02589 Uncharacterised ACR, YkgG family COG1556 115 212 2.8E-18 T 23-04-2016 IPR003741 LUD domain RD1_RS00320 16e81b0e377cf71d9c2bac26f1584d2d 214 Gene3D G3DSA:3.40.50.10420 45 212 8.3E-35 T 23-04-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain RD1_RS00320 16e81b0e377cf71d9c2bac26f1584d2d 214 SUPERFAMILY SSF100950 44 212 1.05E-29 T 23-04-2016 RD1_RS00320 16e81b0e377cf71d9c2bac26f1584d2d 214 PANTHER PTHR32479 116 214 2.6E-17 T 23-04-2016 RD1_RS17275 eedc23d83e5faa09c88b14ab41e089d0 436 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 264 430 3.2E-19 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS17275 eedc23d83e5faa09c88b14ab41e089d0 436 PANTHER PTHR35011 224 363 1.9E-15 T 23-04-2016 RD1_RS17275 eedc23d83e5faa09c88b14ab41e089d0 436 PANTHER PTHR35011 401 436 1.9E-15 T 23-04-2016 RD1_RS00385 e7a1831bf943ccdbee1b5d175c37f487 185 SUPERFAMILY SSF88946 11 84 1.52E-20 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS00385 e7a1831bf943ccdbee1b5d175c37f487 185 Gene3D G3DSA:1.10.10.10 98 159 7.2E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS00385 e7a1831bf943ccdbee1b5d175c37f487 185 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 157 8.8E-23 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS00385 e7a1831bf943ccdbee1b5d175c37f487 185 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 31 62 - T 23-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS00385 e7a1831bf943ccdbee1b5d175c37f487 185 Gene3D G3DSA:1.10.1740.10 12 77 8.6E-22 T 23-04-2016 RD1_RS00385 e7a1831bf943ccdbee1b5d175c37f487 185 PANTHER PTHR30173:SF6 13 177 1.2E-36 T 23-04-2016 RD1_RS00385 e7a1831bf943ccdbee1b5d175c37f487 185 SUPERFAMILY SSF88659 98 158 1.88E-14 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS00385 e7a1831bf943ccdbee1b5d175c37f487 185 Pfam PF04542 Sigma-70 region 2 12 76 3.4E-16 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS00385 e7a1831bf943ccdbee1b5d175c37f487 185 PANTHER PTHR30173 13 177 1.2E-36 T 23-04-2016 RD1_RS00385 e7a1831bf943ccdbee1b5d175c37f487 185 Pfam PF08281 Sigma-70, region 4 104 154 3.3E-14 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RD1_RS15425 d053b816e3274b4cd8decce04845e005 390 Gene3D G3DSA:2.40.30.10 188 264 2.7E-26 T 23-04-2016 RD1_RS15425 d053b816e3274b4cd8decce04845e005 390 SUPERFAMILY SSF51905 1 188 2.95E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS15425 d053b816e3274b4cd8decce04845e005 390 SUPERFAMILY SSF51905 332 390 2.95E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS15425 d053b816e3274b4cd8decce04845e005 390 Pfam PF03486 HI0933-like protein 4 387 3.7E-131 T 23-04-2016 RD1_RS15425 d053b816e3274b4cd8decce04845e005 390 SUPERFAMILY SSF160996 189 335 1.07E-37 T 23-04-2016 RD1_RS15425 d053b816e3274b4cd8decce04845e005 390 PANTHER PTHR10617 325 390 5.6E-97 T 23-04-2016 RD1_RS15425 d053b816e3274b4cd8decce04845e005 390 PANTHER PTHR10617 1 285 5.6E-97 T 23-04-2016 RD1_RS15425 d053b816e3274b4cd8decce04845e005 390 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 5 386 1.1E-112 T 23-04-2016 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like RD1_RS15425 d053b816e3274b4cd8decce04845e005 390 Gene3D G3DSA:3.50.50.60 334 389 4.9E-40 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS15425 d053b816e3274b4cd8decce04845e005 390 Gene3D G3DSA:3.50.50.60 2 186 4.9E-40 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS15425 d053b816e3274b4cd8decce04845e005 390 PANTHER PTHR10617:SF103 325 390 5.6E-97 T 23-04-2016 RD1_RS15425 d053b816e3274b4cd8decce04845e005 390 PANTHER PTHR10617:SF103 1 285 5.6E-97 T 23-04-2016 RD1_RS15425 d053b816e3274b4cd8decce04845e005 390 Gene3D G3DSA:1.10.8.260 265 316 2.7E-9 T 23-04-2016 IPR023166 HI0933 insert-like domain RD1_RS02360 e74f7749bb04f64bff0cc6279ec14b78 251 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 250 1.0E-49 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RD1_RS02360 e74f7749bb04f64bff0cc6279ec14b78 251 SUPERFAMILY SSF52096 2 251 2.99E-72 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS02360 e74f7749bb04f64bff0cc6279ec14b78 251 PANTHER PTHR11941 1 250 7.0E-75 T 23-04-2016 RD1_RS02360 e74f7749bb04f64bff0cc6279ec14b78 251 Gene3D G3DSA:3.90.226.10 2 247 8.2E-72 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS17960 ecd00ba5e041bdd4c36452bc11df4c8d 139 Gene3D G3DSA:1.10.10.10 10 89 5.9E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS17960 ecd00ba5e041bdd4c36452bc11df4c8d 139 PANTHER PTHR33202 11 137 5.1E-40 T 23-04-2016 RD1_RS17960 ecd00ba5e041bdd4c36452bc11df4c8d 139 Pfam PF01475 Ferric uptake regulator family 16 100 8.9E-18 T 23-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RD1_RS17960 ecd00ba5e041bdd4c36452bc11df4c8d 139 SUPERFAMILY SSF46785 11 134 4.76E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS17960 ecd00ba5e041bdd4c36452bc11df4c8d 139 PANTHER PTHR33202:SF3 11 137 5.1E-40 T 23-04-2016 RD1_RS06060 61c8161c315e16ac50b026c19ac04594 201 Gene3D G3DSA:3.40.630.30 6 155 2.9E-29 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS06060 61c8161c315e16ac50b026c19ac04594 201 Pfam PF13302 Acetyltransferase (GNAT) domain 13 148 9.7E-22 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS06060 61c8161c315e16ac50b026c19ac04594 201 SUPERFAMILY SSF55729 6 151 3.54E-29 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS06060 61c8161c315e16ac50b026c19ac04594 201 PANTHER PTHR13256 8 151 1.2E-14 T 23-04-2016 RD1_RS06980 4a2a98a8fe9013a2b08062fec0c17522 122 SUPERFAMILY SSF52833 26 113 1.12E-7 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS06980 4a2a98a8fe9013a2b08062fec0c17522 122 Gene3D G3DSA:3.40.30.10 26 112 9.6E-5 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS12190 f5f6feffa3f854e6101fd62496ab7bc5 278 Gene3D G3DSA:3.20.20.70 3 275 8.6E-94 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS12190 f5f6feffa3f854e6101fd62496ab7bc5 278 Pfam PF05853 beta-keto acid cleavage enzyme 4 273 1.0E-85 T 23-04-2016 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24|UniPathway: UPA00870 RD1_RS12190 f5f6feffa3f854e6101fd62496ab7bc5 278 PANTHER PTHR37418 2 276 6.9E-97 T 23-04-2016 RD1_RS12190 f5f6feffa3f854e6101fd62496ab7bc5 278 PANTHER PTHR37418:SF2 2 276 6.9E-97 T 23-04-2016 RD1_RS08725 88a3d5904dea19fb75783c4ecd6e3533 428 SUPERFAMILY SSF53474 60 406 5.03E-32 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08725 88a3d5904dea19fb75783c4ecd6e3533 428 Pfam PF06850 PHB de-polymerase C-terminus 207 408 2.1E-90 T 23-04-2016 IPR009656 PHB de-polymerase, C-terminal RD1_RS08725 88a3d5904dea19fb75783c4ecd6e3533 428 Gene3D G3DSA:3.40.50.1820 71 408 2.8E-9 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08725 88a3d5904dea19fb75783c4ecd6e3533 428 TIGRFAM TIGR01849 PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular 6 407 8.4E-174 T 23-04-2016 IPR010915 Polyhydroxyalkanoate depolymerase RD1_RS08725 88a3d5904dea19fb75783c4ecd6e3533 428 PIRSF PIRSF020818 1 421 4.3E-164 T 23-04-2016 IPR010915 Polyhydroxyalkanoate depolymerase RD1_RS07745 a2e3dd4e9a2e23592361ac73b66b32b2 391 Pfam PF00202 Aminotransferase class-III 13 383 4.9E-120 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS07745 a2e3dd4e9a2e23592361ac73b66b32b2 391 PANTHER PTHR11986:SF79 9 391 2.7E-168 T 23-04-2016 RD1_RS07745 a2e3dd4e9a2e23592361ac73b66b32b2 391 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 5 384 2.3E-140 T 23-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RD1_RS07745 a2e3dd4e9a2e23592361ac73b66b32b2 391 Gene3D G3DSA:3.90.1150.10 279 387 5.6E-34 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS07745 a2e3dd4e9a2e23592361ac73b66b32b2 391 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 211 248 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS07745 a2e3dd4e9a2e23592361ac73b66b32b2 391 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 2 386 43.96 T 23-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RD1_RS07745 a2e3dd4e9a2e23592361ac73b66b32b2 391 Gene3D G3DSA:3.40.640.10 48 278 1.1E-90 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS07745 a2e3dd4e9a2e23592361ac73b66b32b2 391 PANTHER PTHR11986 9 391 2.7E-168 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RD1_RS07745 a2e3dd4e9a2e23592361ac73b66b32b2 391 SUPERFAMILY SSF53383 4 384 1.36E-127 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS17055 af469117460a03d26b629c56206b72ad 254 SMART SM00665 24 169 1.5E-7 T 23-04-2016 IPR006593 Cytochrome b561/ferric reductase transmembrane RD1_RS17055 af469117460a03d26b629c56206b72ad 254 PANTHER PTHR23130 4 123 4.8E-17 T 23-04-2016 RD1_RS17055 af469117460a03d26b629c56206b72ad 254 PANTHER PTHR23130 140 248 4.8E-17 T 23-04-2016 RD1_RS17055 af469117460a03d26b629c56206b72ad 254 Pfam PF03188 Eukaryotic cytochrome b561 24 169 2.8E-6 T 23-04-2016 IPR006593 Cytochrome b561/ferric reductase transmembrane RD1_RS07860 467206c7b8088d01a8201c92e38ff36c 417 TIGRFAM TIGR01373 soxB: sarcosine oxidase, beta subunit family 4 409 9.2E-211 T 23-04-2016 IPR006278 Sarcosine oxidase subunit beta GO:0008115|GO:0046653|GO:0055114 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS07860 467206c7b8088d01a8201c92e38ff36c 417 PANTHER PTHR13847 24 401 4.4E-49 T 23-04-2016 RD1_RS07860 467206c7b8088d01a8201c92e38ff36c 417 Gene3D G3DSA:3.30.9.10 116 174 2.8E-13 T 23-04-2016 RD1_RS07860 467206c7b8088d01a8201c92e38ff36c 417 Gene3D G3DSA:3.30.9.10 255 344 2.8E-13 T 23-04-2016 RD1_RS07860 467206c7b8088d01a8201c92e38ff36c 417 Gene3D G3DSA:3.50.50.60 18 111 4.3E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07860 467206c7b8088d01a8201c92e38ff36c 417 Gene3D G3DSA:3.50.50.60 175 254 4.3E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07860 467206c7b8088d01a8201c92e38ff36c 417 Gene3D G3DSA:3.50.50.60 345 403 4.3E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07860 467206c7b8088d01a8201c92e38ff36c 417 SUPERFAMILY SSF51905 32 255 9.97E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07860 467206c7b8088d01a8201c92e38ff36c 417 SUPERFAMILY SSF51905 345 407 9.97E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07860 467206c7b8088d01a8201c92e38ff36c 417 SUPERFAMILY SSF54373 262 341 9.81E-5 T 23-04-2016 RD1_RS07860 467206c7b8088d01a8201c92e38ff36c 417 Pfam PF01266 FAD dependent oxidoreductase 34 381 3.1E-58 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS17000 755bbfa85c93f04352f22761f72170a3 375 SUPERFAMILY SSF51735 3 164 1.25E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17000 755bbfa85c93f04352f22761f72170a3 375 SUPERFAMILY SSF55347 138 313 2.94E-44 T 23-04-2016 RD1_RS17000 755bbfa85c93f04352f22761f72170a3 375 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 144 262 1.8E-10 T 23-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 RD1_RS17000 755bbfa85c93f04352f22761f72170a3 375 Gene3D G3DSA:3.40.50.720 1 151 3.8E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17000 755bbfa85c93f04352f22761f72170a3 375 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 131 1.6E-22 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RD1_RS17000 755bbfa85c93f04352f22761f72170a3 375 Gene3D G3DSA:3.30.360.10 152 271 1.7E-44 T 23-04-2016 RD1_RS17000 755bbfa85c93f04352f22761f72170a3 375 Gene3D G3DSA:3.30.360.10 317 374 1.7E-44 T 23-04-2016 RD1_RS17000 755bbfa85c93f04352f22761f72170a3 375 PANTHER PTHR22604 1 375 2.4E-77 T 23-04-2016 RD1_RS17000 755bbfa85c93f04352f22761f72170a3 375 PANTHER PTHR22604:SF123 1 375 2.4E-77 T 23-04-2016 RD1_RS00845 e30b7db38d73ab064631bc86c98a2c48 199 SUPERFAMILY SSF53448 7 191 2.57E-34 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS00845 e30b7db38d73ab064631bc86c98a2c48 199 Gene3D G3DSA:3.90.550.10 7 160 4.4E-28 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS00845 e30b7db38d73ab064631bc86c98a2c48 199 TIGRFAM TIGR04282 glyco_like_cofC: transferase 1, rSAM/selenodomain-associated 5 189 1.5E-43 T 23-04-2016 IPR018641 Transferase 1, rSAM/selenodomain-associated RD1_RS00845 e30b7db38d73ab064631bc86c98a2c48 199 PANTHER PTHR36529 1 191 8.8E-31 T 23-04-2016 RD1_RS00845 e30b7db38d73ab064631bc86c98a2c48 199 Pfam PF09837 Uncharacterized protein conserved in bacteria (DUF2064) 45 158 8.3E-34 T 23-04-2016 IPR018641 Transferase 1, rSAM/selenodomain-associated RD1_RS03900 d6352057e5c8e71454a0bcb4d8726329 193 PANTHER PTHR35011 1 183 1.2E-18 T 23-04-2016 RD1_RS03900 d6352057e5c8e71454a0bcb4d8726329 193 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 29 161 2.7E-23 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS16030 e38cfea55952adc4d91ec850812e99b6 411 SUPERFAMILY SSF111369 70 157 1.83E-9 T 23-04-2016 RD1_RS16030 e38cfea55952adc4d91ec850812e99b6 411 PANTHER PTHR30367:SF4 1 410 1.5E-144 T 23-04-2016 RD1_RS16030 e38cfea55952adc4d91ec850812e99b6 411 PANTHER PTHR30367 1 410 1.5E-144 T 23-04-2016 RD1_RS16030 e38cfea55952adc4d91ec850812e99b6 411 Pfam PF13533 Biotin-lipoyl like 74 121 3.5E-7 T 23-04-2016 RD1_RS16030 e38cfea55952adc4d91ec850812e99b6 411 Gene3D G3DSA:2.40.50.100 227 251 3.5E-11 T 23-04-2016 RD1_RS16030 e38cfea55952adc4d91ec850812e99b6 411 Gene3D G3DSA:2.40.50.100 74 107 3.5E-11 T 23-04-2016 RD1_RS18625 b8ab3275d09df5408b38b99de536e483 504 SMART SM00382 29 221 1.3E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS18625 b8ab3275d09df5408b38b99de536e483 504 PANTHER PTHR24220 6 378 6.0E-157 T 23-04-2016 RD1_RS18625 b8ab3275d09df5408b38b99de536e483 504 SUPERFAMILY SSF52540 250 481 2.89E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18625 b8ab3275d09df5408b38b99de536e483 504 Pfam PF00005 ABC transporter 21 165 5.2E-35 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS18625 b8ab3275d09df5408b38b99de536e483 504 Pfam PF00005 ABC transporter 269 425 4.5E-11 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS18625 b8ab3275d09df5408b38b99de536e483 504 PANTHER PTHR24220:SF239 6 378 6.0E-157 T 23-04-2016 RD1_RS18625 b8ab3275d09df5408b38b99de536e483 504 Gene3D G3DSA:3.40.50.300 2 230 1.9E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18625 b8ab3275d09df5408b38b99de536e483 504 Gene3D G3DSA:3.40.50.300 250 485 1.4E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18625 b8ab3275d09df5408b38b99de536e483 504 SUPERFAMILY SSF52540 3 217 9.58E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18625 b8ab3275d09df5408b38b99de536e483 504 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS18625 b8ab3275d09df5408b38b99de536e483 504 ProSitePatterns PS00211 ABC transporters family signature. 398 412 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS07230 eed260f137e95284665799b5c2eae76d 580 Gene3D G3DSA:2.140.10.20 288 571 3.5E-133 T 23-04-2016 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain RD1_RS07230 eed260f137e95284665799b5c2eae76d 580 Gene3D G3DSA:1.10.760.10 61 143 2.8E-23 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07230 eed260f137e95284665799b5c2eae76d 580 Pfam PF02239 Cytochrome D1 heme domain 179 575 2.7E-146 T 23-04-2016 RD1_RS07230 eed260f137e95284665799b5c2eae76d 580 Gene3D G3DSA:2.130.10.10 186 287 1.1E-5 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RD1_RS07230 eed260f137e95284665799b5c2eae76d 580 SUPERFAMILY SSF51004 151 578 2.88E-119 T 23-04-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain RD1_RS07230 eed260f137e95284665799b5c2eae76d 580 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 69 142 3.8E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07230 eed260f137e95284665799b5c2eae76d 580 SUPERFAMILY SSF46626 21 167 2.29E-20 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS00200 6f71029038c5fe45cb50c27719f9993d 164 Gene3D G3DSA:2.40.440.10 20 163 3.8E-4 T 23-04-2016 RD1_RS00200 6f71029038c5fe45cb50c27719f9993d 164 PANTHER PTHR38589 11 163 6.7E-22 T 23-04-2016 RD1_RS00200 6f71029038c5fe45cb50c27719f9993d 164 Pfam PF03734 L,D-transpeptidase catalytic domain 20 163 6.8E-12 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RD1_RS00200 6f71029038c5fe45cb50c27719f9993d 164 SUPERFAMILY SSF141523 110 163 3.01E-8 T 23-04-2016 RD1_RS00200 6f71029038c5fe45cb50c27719f9993d 164 SUPERFAMILY SSF141523 19 54 3.01E-8 T 23-04-2016 RD1_RS00200 6f71029038c5fe45cb50c27719f9993d 164 PANTHER PTHR38589:SF1 11 163 6.7E-22 T 23-04-2016 RD1_RS11725 9302ef02e005586c22e6a16772964a2c 326 Pfam PF02355 Protein export membrane protein 131 303 3.9E-72 T 23-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RD1_RS11725 9302ef02e005586c22e6a16772964a2c 326 SUPERFAMILY SSF82866 88 308 2.75E-43 T 23-04-2016 RD1_RS11725 9302ef02e005586c22e6a16772964a2c 326 PRINTS PR01755 Bacterial translocase SecF protein signature 39 54 1.9E-33 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RD1_RS11725 9302ef02e005586c22e6a16772964a2c 326 PRINTS PR01755 Bacterial translocase SecF protein signature 163 177 1.9E-33 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RD1_RS11725 9302ef02e005586c22e6a16772964a2c 326 PRINTS PR01755 Bacterial translocase SecF protein signature 243 258 1.9E-33 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RD1_RS11725 9302ef02e005586c22e6a16772964a2c 326 PRINTS PR01755 Bacterial translocase SecF protein signature 211 229 1.9E-33 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RD1_RS11725 9302ef02e005586c22e6a16772964a2c 326 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 12 306 28.249 T 23-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RD1_RS11725 9302ef02e005586c22e6a16772964a2c 326 Gene3D G3DSA:1.20.1640.10 121 312 1.3E-29 T 23-04-2016 RD1_RS11725 9302ef02e005586c22e6a16772964a2c 326 Pfam PF07549 SecD/SecF GG Motif 35 61 2.7E-8 T 23-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RD1_RS11725 9302ef02e005586c22e6a16772964a2c 326 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 40 295 1.1E-87 T 23-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RD1_RS11725 9302ef02e005586c22e6a16772964a2c 326 PANTHER PTHR30081 3 326 4.8E-79 T 23-04-2016 RD1_RS11725 9302ef02e005586c22e6a16772964a2c 326 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 111 292 2.3E-61 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RD1_RS13105 a80123df394166d373eeddd5582ca620 252 Gene3D G3DSA:3.40.50.720 3 113 3.8E-23 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13105 a80123df394166d373eeddd5582ca620 252 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 3 91 2.3E-15 T 23-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RD1_RS13105 a80123df394166d373eeddd5582ca620 252 PANTHER PTHR11645 3 101 7.9E-17 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RD1_RS13105 a80123df394166d373eeddd5582ca620 252 SUPERFAMILY SSF51735 3 112 2.71E-21 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS00630 81123137a363eae181b325cbe2f60203 1190 PANTHER PTHR23304:SF109 15 1189 0.0 T 23-04-2016 RD1_RS00630 81123137a363eae181b325cbe2f60203 1190 Pfam PF11965 Domain of unknown function (DUF3479) 15 174 9.8E-45 T 23-04-2016 IPR022571 Magnesium chelatase, subunit H, N-terminal GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RD1_RS00630 81123137a363eae181b325cbe2f60203 1190 Pfam PF02514 CobN/Magnesium Chelatase 178 1169 1.1E-285 T 23-04-2016 IPR003672 CobN/magnesium chelatase GO:0009058 RD1_RS00630 81123137a363eae181b325cbe2f60203 1190 PANTHER PTHR23304 15 1189 0.0 T 23-04-2016 RD1_RS07305 af54895858f013e53d752cb9f4d3c113 546 Gene3D G3DSA:3.50.50.60 464 526 2.8E-111 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07305 af54895858f013e53d752cb9f4d3c113 546 Gene3D G3DSA:3.50.50.60 2 126 2.8E-111 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07305 af54895858f013e53d752cb9f4d3c113 546 Gene3D G3DSA:3.50.50.60 187 313 2.8E-111 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07305 af54895858f013e53d752cb9f4d3c113 546 PANTHER PTHR11552 5 546 1.9E-190 T 23-04-2016 RD1_RS07305 af54895858f013e53d752cb9f4d3c113 546 PIRSF PIRSF000137 1 529 2.1E-140 T 23-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 RD1_RS07305 af54895858f013e53d752cb9f4d3c113 546 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 81 104 - T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS07305 af54895858f013e53d752cb9f4d3c113 546 Pfam PF05199 GMC oxidoreductase 386 521 3.2E-37 T 23-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 RD1_RS07305 af54895858f013e53d752cb9f4d3c113 546 Pfam PF00732 GMC oxidoreductase 5 295 1.0E-86 T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS07305 af54895858f013e53d752cb9f4d3c113 546 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 254 268 - T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RD1_RS07305 af54895858f013e53d752cb9f4d3c113 546 SUPERFAMILY SSF54373 290 471 1.28E-50 T 23-04-2016 RD1_RS07305 af54895858f013e53d752cb9f4d3c113 546 SUPERFAMILY SSF51905 2 288 2.59E-87 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS07305 af54895858f013e53d752cb9f4d3c113 546 SUPERFAMILY SSF51905 470 529 2.59E-87 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS14230 ff81c98cf884dcdaaf261368b0aed15b 329 Gene3D G3DSA:3.40.190.10 33 123 1.5E-4 T 23-04-2016 RD1_RS14230 ff81c98cf884dcdaaf261368b0aed15b 329 Gene3D G3DSA:3.40.190.10 124 208 1.2E-5 T 23-04-2016 RD1_RS14230 ff81c98cf884dcdaaf261368b0aed15b 329 SUPERFAMILY SSF53850 27 274 4.84E-31 T 23-04-2016 RD1_RS14230 ff81c98cf884dcdaaf261368b0aed15b 329 PANTHER PTHR31528 1 306 7.3E-49 T 23-04-2016 IPR027939 NMT1/THI5 family GO:0009228 UniPathway: UPA00060 RD1_RS14230 ff81c98cf884dcdaaf261368b0aed15b 329 Pfam PF09084 NMT1/THI5 like 36 254 6.0E-40 T 23-04-2016 IPR015168 SsuA/THI5-like RD1_RS17090 a83513db0556b402b9f10949175209f2 575 SUPERFAMILY SSF90123 20 312 1.44E-39 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS17090 a83513db0556b402b9f10949175209f2 575 Pfam PF00005 ABC transporter 349 497 3.6E-13 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS17090 a83513db0556b402b9f10949175209f2 575 Gene3D G3DSA:3.40.50.300 333 541 7.7E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17090 a83513db0556b402b9f10949175209f2 575 SUPERFAMILY SSF52540 326 542 1.15E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17090 a83513db0556b402b9f10949175209f2 575 PANTHER PTHR24222 16 536 4.6E-40 T 23-04-2016 RD1_RS17090 a83513db0556b402b9f10949175209f2 575 Pfam PF00664 ABC transporter transmembrane region 24 281 8.0E-24 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS17090 a83513db0556b402b9f10949175209f2 575 Gene3D G3DSA:1.20.1560.10 14 307 3.4E-37 T 23-04-2016 RD1_RS17090 a83513db0556b402b9f10949175209f2 575 SMART SM00382 357 544 6.5E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS10435 9b18238a47234c618711944ba33a35d4 104 PIRSF PIRSF031780 1 104 5.3E-39 T 23-04-2016 IPR009945 Protein of unknown function DUF1476 RD1_RS10435 9b18238a47234c618711944ba33a35d4 104 Pfam PF07345 Domain of unknown function (DUF1476) 1 99 9.1E-42 T 23-04-2016 IPR009945 Protein of unknown function DUF1476 RD1_RS10160 14311655f75658f3e4fca4a1bd377def 502 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 442 5.5E-135 T 23-04-2016 IPR002823 Protein of unknown function DUF112, transmembrane RD1_RS10160 14311655f75658f3e4fca4a1bd377def 502 PANTHER PTHR35342 2 499 1.4E-184 T 23-04-2016 RD1_RS06610 1cc4059f02a318dbda9774ccd7eb4d10 62 PIRSF PIRSF002211 1 61 1.5E-23 T 23-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RD1_RS06610 1cc4059f02a318dbda9774ccd7eb4d10 62 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 5 59 8.1E-25 T 23-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RD1_RS06610 1cc4059f02a318dbda9774ccd7eb4d10 62 Pfam PF00327 Ribosomal protein L30p/L7e 6 55 1.1E-15 T 23-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RD1_RS06610 1cc4059f02a318dbda9774ccd7eb4d10 62 SUPERFAMILY SSF55129 3 59 3.4E-19 T 23-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RD1_RS06610 1cc4059f02a318dbda9774ccd7eb4d10 62 PANTHER PTHR15892 1 61 7.3E-23 T 23-04-2016 RD1_RS06610 1cc4059f02a318dbda9774ccd7eb4d10 62 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 17.566 T 23-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RD1_RS06610 1cc4059f02a318dbda9774ccd7eb4d10 62 Gene3D G3DSA:3.30.1390.20 2 59 1.6E-27 T 23-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RD1_RS06610 1cc4059f02a318dbda9774ccd7eb4d10 62 PANTHER PTHR15892:SF2 1 61 7.3E-23 T 23-04-2016 RD1_RS05020 39dcf7615745cc2be8ce82d261abfe42 335 SUPERFAMILY SSF53756 61 323 8.9E-31 T 23-04-2016 RD1_RS05020 39dcf7615745cc2be8ce82d261abfe42 335 PANTHER PTHR12526 45 59 4.5E-16 T 23-04-2016 RD1_RS05020 39dcf7615745cc2be8ce82d261abfe42 335 PANTHER PTHR12526 189 334 4.5E-16 T 23-04-2016 RD1_RS05020 39dcf7615745cc2be8ce82d261abfe42 335 Gene3D G3DSA:3.40.50.2000 177 310 8.1E-14 T 23-04-2016 RD1_RS05020 39dcf7615745cc2be8ce82d261abfe42 335 PANTHER PTHR12526:SF232 45 59 4.5E-16 T 23-04-2016 RD1_RS05020 39dcf7615745cc2be8ce82d261abfe42 335 PANTHER PTHR12526:SF232 189 334 4.5E-16 T 23-04-2016 RD1_RS05020 39dcf7615745cc2be8ce82d261abfe42 335 Pfam PF00534 Glycosyl transferases group 1 157 311 1.1E-17 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RD1_RS13780 b84ad4ddced7e7c7f62e5ee3651f7034 194 Gene3D G3DSA:1.25.40.10 80 182 1.0E-33 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS13780 b84ad4ddced7e7c7f62e5ee3651f7034 194 PANTHER PTHR23004 5 183 8.4E-60 T 23-04-2016 RD1_RS13780 b84ad4ddced7e7c7f62e5ee3651f7034 194 SUPERFAMILY SSF48452 2 179 3.11E-64 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS13780 b84ad4ddced7e7c7f62e5ee3651f7034 194 Gene3D G3DSA:1.20.58.320 3 79 2.9E-25 T 23-04-2016 RD1_RS13780 b84ad4ddced7e7c7f62e5ee3651f7034 194 Pfam PF06041 Bacterial protein of unknown function (DUF924) 7 180 8.5E-56 T 23-04-2016 IPR010323 Protein of unknown function DUF924 RD1_RS13780 b84ad4ddced7e7c7f62e5ee3651f7034 194 PANTHER PTHR23004:SF7 5 183 8.4E-60 T 23-04-2016 RD1_RS16980 4f2fff1b50c63cd3c9de7bc004a761c7 832 SMART SM00100 708 823 6.3E-6 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS16980 4f2fff1b50c63cd3c9de7bc004a761c7 832 Pfam PF00027 Cyclic nucleotide-binding domain 730 807 3.2E-12 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS16980 4f2fff1b50c63cd3c9de7bc004a761c7 832 PANTHER PTHR10110:SF86 3 455 8.4E-78 T 23-04-2016 RD1_RS16980 4f2fff1b50c63cd3c9de7bc004a761c7 832 PANTHER PTHR10110:SF86 604 664 8.4E-78 T 23-04-2016 RD1_RS16980 4f2fff1b50c63cd3c9de7bc004a761c7 832 PANTHER PTHR10110 3 455 8.4E-78 T 23-04-2016 IPR018422 Cation/H+ exchanger, CPA1 family GO:0006812|GO:0015299|GO:0016021 Reactome: REACT_15518 RD1_RS16980 4f2fff1b50c63cd3c9de7bc004a761c7 832 PANTHER PTHR10110 604 664 8.4E-78 T 23-04-2016 IPR018422 Cation/H+ exchanger, CPA1 family GO:0006812|GO:0015299|GO:0016021 Reactome: REACT_15518 RD1_RS16980 4f2fff1b50c63cd3c9de7bc004a761c7 832 Gene3D G3DSA:2.60.120.10 700 820 1.1E-21 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS16980 4f2fff1b50c63cd3c9de7bc004a761c7 832 Pfam PF00999 Sodium/hydrogen exchanger family 9 416 2.5E-48 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RD1_RS16980 4f2fff1b50c63cd3c9de7bc004a761c7 832 SUPERFAMILY SSF51206 699 816 1.44E-21 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RD1_RS00230 894a1c6e0e060df9fd27da9b44b460ec 333 SUPERFAMILY SSF48019 216 329 3.49E-14 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RD1_RS13170 61c30d0c80123a8bfc7730daa50f4492 263 SUPERFAMILY SSF46785 6 77 4.27E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS13170 61c30d0c80123a8bfc7730daa50f4492 263 Gene3D G3DSA:3.30.450.40 73 248 6.6E-56 T 23-04-2016 IPR029016 GAF domain-like RD1_RS13170 61c30d0c80123a8bfc7730daa50f4492 263 SUPERFAMILY SSF55781 70 246 2.75E-50 T 23-04-2016 IPR029016 GAF domain-like RD1_RS13170 61c30d0c80123a8bfc7730daa50f4492 263 Pfam PF09339 IclR helix-turn-helix domain 7 57 7.8E-11 T 23-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RD1_RS13170 61c30d0c80123a8bfc7730daa50f4492 263 Pfam PF01614 Bacterial transcriptional regulator 125 245 1.7E-32 T 23-04-2016 IPR014757 Transcription regulator IclR, C-terminal RD1_RS13170 61c30d0c80123a8bfc7730daa50f4492 263 Gene3D G3DSA:1.10.10.10 5 67 1.5E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS13170 61c30d0c80123a8bfc7730daa50f4492 263 SMART SM00346 4 94 6.2E-15 T 23-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RD1_RS13170 61c30d0c80123a8bfc7730daa50f4492 263 PANTHER PTHR30136 6 261 1.4E-61 T 23-04-2016 RD1_RS20490 1f7b5f216d9356dbe134de5f80aace0f 308 SUPERFAMILY SSF51120 152 307 2.09E-22 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS20490 1f7b5f216d9356dbe134de5f80aace0f 308 PRINTS PR00313 NodO calcium binding signature 222 231 6.1E-11 T 23-04-2016 RD1_RS20490 1f7b5f216d9356dbe134de5f80aace0f 308 PRINTS PR00313 NodO calcium binding signature 204 212 6.1E-11 T 23-04-2016 RD1_RS20490 1f7b5f216d9356dbe134de5f80aace0f 308 PRINTS PR00313 NodO calcium binding signature 213 221 6.1E-11 T 23-04-2016 RD1_RS20490 1f7b5f216d9356dbe134de5f80aace0f 308 PRINTS PR00313 NodO calcium binding signature 192 203 6.1E-11 T 23-04-2016 RD1_RS20490 1f7b5f216d9356dbe134de5f80aace0f 308 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 209 227 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20490 1f7b5f216d9356dbe134de5f80aace0f 308 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 200 218 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20490 1f7b5f216d9356dbe134de5f80aace0f 308 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 191 209 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RD1_RS20490 1f7b5f216d9356dbe134de5f80aace0f 308 Gene3D G3DSA:2.150.10.10 32 66 1.2E-21 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS20490 1f7b5f216d9356dbe134de5f80aace0f 308 Gene3D G3DSA:2.150.10.10 136 306 1.2E-21 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS20490 1f7b5f216d9356dbe134de5f80aace0f 308 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 213 229 0.011 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20490 1f7b5f216d9356dbe134de5f80aace0f 308 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 177 193 0.0045 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS20490 1f7b5f216d9356dbe134de5f80aace0f 308 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 194 211 0.03 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS09570 33a9edb13a4f3894b75e965742424760 326 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 9 320 1.5E-72 T 23-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 RD1_RS09570 33a9edb13a4f3894b75e965742424760 326 PANTHER PTHR10443 276 317 2.8E-55 T 23-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 RD1_RS09570 33a9edb13a4f3894b75e965742424760 326 PANTHER PTHR10443 17 245 2.8E-55 T 23-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 RD1_RS09570 33a9edb13a4f3894b75e965742424760 326 SUPERFAMILY SSF51556 4 244 3.23E-84 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS09570 33a9edb13a4f3894b75e965742424760 326 SUPERFAMILY SSF51556 275 323 3.23E-84 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS09570 33a9edb13a4f3894b75e965742424760 326 Gene3D G3DSA:3.20.20.140 2 321 7.2E-76 T 23-04-2016 RD1_RS09570 33a9edb13a4f3894b75e965742424760 326 PANTHER PTHR10443:SF24 276 317 2.8E-55 T 23-04-2016 RD1_RS09570 33a9edb13a4f3894b75e965742424760 326 PANTHER PTHR10443:SF24 17 245 2.8E-55 T 23-04-2016 RD1_RS03250 51ec62ffd8af022bad1f0b7921857ba1 427 SUPERFAMILY SSF53822 28 394 2.32E-46 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS03250 51ec62ffd8af022bad1f0b7921857ba1 427 Pfam PF13458 Periplasmic binding protein 25 386 1.2E-64 T 23-04-2016 IPR028081 Leucine-binding protein domain RD1_RS03250 51ec62ffd8af022bad1f0b7921857ba1 427 Gene3D G3DSA:3.40.50.2300 31 146 2.6E-8 T 23-04-2016 RD1_RS03250 51ec62ffd8af022bad1f0b7921857ba1 427 Gene3D G3DSA:3.40.50.2300 291 345 2.6E-8 T 23-04-2016 RD1_RS03250 51ec62ffd8af022bad1f0b7921857ba1 427 Gene3D G3DSA:3.40.50.2300 153 290 3.6E-13 T 23-04-2016 RD1_RS18085 85f840eedef4c8dc4860338ed33c7e81 341 PANTHER PTHR30193 110 341 2.0E-29 T 23-04-2016 RD1_RS18085 85f840eedef4c8dc4860338ed33c7e81 341 PANTHER PTHR30193 8 47 2.0E-29 T 23-04-2016 RD1_RS18085 85f840eedef4c8dc4860338ed33c7e81 341 PANTHER PTHR30193 80 93 2.0E-29 T 23-04-2016 RD1_RS18085 85f840eedef4c8dc4860338ed33c7e81 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 131 277 8.2E-11 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18085 85f840eedef4c8dc4860338ed33c7e81 341 Gene3D G3DSA:1.10.3720.10 5 45 4.7E-36 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18085 85f840eedef4c8dc4860338ed33c7e81 341 Gene3D G3DSA:1.10.3720.10 78 325 4.7E-36 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18085 85f840eedef4c8dc4860338ed33c7e81 341 SUPERFAMILY SSF161098 108 324 1.83E-35 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11710 c0b6b8f8f08548e38c2d65e6a651a99e 269 Gene3D G3DSA:2.40.10.10 63 168 5.8E-18 T 23-04-2016 RD1_RS11710 c0b6b8f8f08548e38c2d65e6a651a99e 269 SUPERFAMILY SSF50494 61 239 1.15E-24 T 23-04-2016 IPR009003 Peptidase S1, PA clan RD1_RS11710 c0b6b8f8f08548e38c2d65e6a651a99e 269 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 81 96 6.3E-8 T 23-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RD1_RS11710 c0b6b8f8f08548e38c2d65e6a651a99e 269 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 210 222 6.3E-8 T 23-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RD1_RS11710 c0b6b8f8f08548e38c2d65e6a651a99e 269 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 141 155 6.3E-8 T 23-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RD1_RS11710 c0b6b8f8f08548e38c2d65e6a651a99e 269 SMART SM00020 68 254 2.2E-4 T 23-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RD1_RS11710 c0b6b8f8f08548e38c2d65e6a651a99e 269 Pfam PF00089 Trypsin 61 215 1.5E-13 T 23-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RD1_RS11710 c0b6b8f8f08548e38c2d65e6a651a99e 269 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 91 96 - T 23-04-2016 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 RD1_RS17775 3db4815238ac06797539408f896c5171 305 Gene3D G3DSA:1.10.3720.10 71 300 5.7E-55 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17775 3db4815238ac06797539408f896c5171 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 290 1.8E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17775 3db4815238ac06797539408f896c5171 305 SUPERFAMILY SSF161098 65 290 9.81E-57 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17775 3db4815238ac06797539408f896c5171 305 Gene3D G3DSA:1.20.58.370 18 53 5.1E-5 T 23-04-2016 RD1_RS17775 3db4815238ac06797539408f896c5171 305 PANTHER PTHR30193:SF23 23 305 4.4E-84 T 23-04-2016 RD1_RS17775 3db4815238ac06797539408f896c5171 305 PANTHER PTHR30193 23 305 4.4E-84 T 23-04-2016 RD1_RS01515 a1e782e10f5d179311642f1772fd753e 307 Gene3D G3DSA:3.40.50.1820 31 304 3.4E-50 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS01515 a1e782e10f5d179311642f1772fd753e 307 SUPERFAMILY SSF53474 36 305 2.92E-49 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS01515 a1e782e10f5d179311642f1772fd753e 307 Pfam PF12146 Serine aminopeptidase, S33 57 287 1.4E-21 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 RD1_RS01515 a1e782e10f5d179311642f1772fd753e 307 PRINTS PR00111 Alpha/beta hydrolase fold signature 82 97 1.0E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS01515 a1e782e10f5d179311642f1772fd753e 307 PRINTS PR00111 Alpha/beta hydrolase fold signature 127 140 1.0E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS01515 a1e782e10f5d179311642f1772fd753e 307 PRINTS PR00111 Alpha/beta hydrolase fold signature 249 263 1.0E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS01515 a1e782e10f5d179311642f1772fd753e 307 PRINTS PR00111 Alpha/beta hydrolase fold signature 141 154 1.0E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS01515 a1e782e10f5d179311642f1772fd753e 307 PANTHER PTHR10992 225 305 2.6E-43 T 23-04-2016 RD1_RS01515 a1e782e10f5d179311642f1772fd753e 307 PANTHER PTHR10992 37 194 2.6E-43 T 23-04-2016 RD1_RS01330 16e77f1f42aba36c788ba0fd1164bec8 238 PANTHER PTHR31851:SF4 3 235 2.2E-57 T 23-04-2016 RD1_RS01330 16e77f1f42aba36c788ba0fd1164bec8 238 Pfam PF01988 VIT family 25 232 4.8E-52 T 23-04-2016 IPR008217 Ccc1 family RD1_RS01330 16e77f1f42aba36c788ba0fd1164bec8 238 PANTHER PTHR31851 3 235 2.2E-57 T 23-04-2016 RD1_RS03120 e11a67218aaa0d613ec9ee74adca8fb3 279 PANTHER PTHR35011 82 272 4.9E-20 T 23-04-2016 RD1_RS03120 e11a67218aaa0d613ec9ee74adca8fb3 279 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 121 252 3.4E-21 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS11440 14531da8c7b11c9976f5781a033e5a2f 88 PANTHER PTHR33609 2 88 3.1E-34 T 23-04-2016 RD1_RS11440 14531da8c7b11c9976f5781a033e5a2f 88 SUPERFAMILY SSF46689 1 84 7.17E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS11440 14531da8c7b11c9976f5781a033e5a2f 88 Gene3D G3DSA:1.10.10.60 13 84 7.5E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS11440 14531da8c7b11c9976f5781a033e5a2f 88 Pfam PF01527 Transposase 2 71 2.8E-21 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RD1_RS08520 14531da8c7b11c9976f5781a033e5a2f 88 PANTHER PTHR33609 2 88 3.1E-34 T 23-04-2016 RD1_RS08520 14531da8c7b11c9976f5781a033e5a2f 88 SUPERFAMILY SSF46689 1 84 7.17E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS08520 14531da8c7b11c9976f5781a033e5a2f 88 Gene3D G3DSA:1.10.10.60 13 84 7.5E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS08520 14531da8c7b11c9976f5781a033e5a2f 88 Pfam PF01527 Transposase 2 71 2.8E-21 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RD1_RS05260 14531da8c7b11c9976f5781a033e5a2f 88 PANTHER PTHR33609 2 88 3.1E-34 T 23-04-2016 RD1_RS05260 14531da8c7b11c9976f5781a033e5a2f 88 SUPERFAMILY SSF46689 1 84 7.17E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS05260 14531da8c7b11c9976f5781a033e5a2f 88 Gene3D G3DSA:1.10.10.60 13 84 7.5E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS05260 14531da8c7b11c9976f5781a033e5a2f 88 Pfam PF01527 Transposase 2 71 2.8E-21 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RD1_RS12875 4eb8af94f5c95f4c8982ef2cd056bab1 139 Pfam PF11014 Protein of unknown function (DUF2852) 24 128 2.1E-39 T 23-04-2016 IPR021273 Protein of unknown function DUF2852 RD1_RS13490 c08189947bf407dfce6aba047998ab71 344 SUPERFAMILY SSF161098 147 329 3.01E-34 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13490 c08189947bf407dfce6aba047998ab71 344 Gene3D G3DSA:1.10.3720.10 144 326 3.8E-32 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13490 c08189947bf407dfce6aba047998ab71 344 PANTHER PTHR30177 60 343 4.6E-71 T 23-04-2016 RD1_RS13490 c08189947bf407dfce6aba047998ab71 344 PANTHER PTHR30177:SF2 60 343 4.6E-71 T 23-04-2016 RD1_RS13490 c08189947bf407dfce6aba047998ab71 344 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 168 326 1.5E-20 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18540 f65c4aee1f9ff5b0d9d94d487259be56 414 SUPERFAMILY SSF116734 40 199 5.07E-21 T 23-04-2016 RD1_RS18540 f65c4aee1f9ff5b0d9d94d487259be56 414 SUPERFAMILY SSF116734 202 411 5.56E-24 T 23-04-2016 RD1_RS18540 f65c4aee1f9ff5b0d9d94d487259be56 414 PANTHER PTHR30408 54 411 2.0E-36 T 23-04-2016 RD1_RS18540 f65c4aee1f9ff5b0d9d94d487259be56 414 PANTHER PTHR30408:SF6 54 411 2.0E-36 T 23-04-2016 RD1_RS02800 d90a68c72abfdd78469072e9a34afae2 329 Pfam PF04116 Fatty acid hydroxylase superfamily 178 308 3.2E-19 T 23-04-2016 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 RD1_RS02800 d90a68c72abfdd78469072e9a34afae2 329 PANTHER PTHR11863 187 311 7.2E-12 T 23-04-2016 RD1_RS19165 51cd62dfcaeaa5a92420becf58e54180 351 Pfam PF05171 Haemin-degrading HemS.ChuX domain 32 155 2.2E-43 T 23-04-2016 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 RD1_RS19165 51cd62dfcaeaa5a92420becf58e54180 351 Pfam PF05171 Haemin-degrading HemS.ChuX domain 210 341 1.2E-42 T 23-04-2016 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 RD1_RS19165 51cd62dfcaeaa5a92420becf58e54180 351 SUPERFAMILY SSF144064 9 344 9.22E-131 T 23-04-2016 RD1_RS19165 51cd62dfcaeaa5a92420becf58e54180 351 Gene3D G3DSA:3.40.1570.10 172 344 2.8E-19 T 23-04-2016 RD1_RS16830 1564cc37da444256f50aab144d33add1 317 Pfam PF00892 EamA-like transporter family 160 296 1.2E-7 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS16830 1564cc37da444256f50aab144d33add1 317 Pfam PF00892 EamA-like transporter family 20 151 4.6E-10 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS16830 1564cc37da444256f50aab144d33add1 317 SUPERFAMILY SSF103481 205 303 5.62E-13 T 23-04-2016 RD1_RS16830 1564cc37da444256f50aab144d33add1 317 PANTHER PTHR22911 1 317 9.7E-44 T 23-04-2016 RD1_RS16830 1564cc37da444256f50aab144d33add1 317 SUPERFAMILY SSF103481 55 154 2.09E-10 T 23-04-2016 RD1_RS18445 aba99730cc492e98ff443e5f86084d40 327 Pfam PF13343 Bacterial extracellular solute-binding protein 74 304 1.8E-31 T 23-04-2016 RD1_RS18445 aba99730cc492e98ff443e5f86084d40 327 Gene3D G3DSA:3.40.190.10 121 257 2.8E-33 T 23-04-2016 RD1_RS18445 aba99730cc492e98ff443e5f86084d40 327 SUPERFAMILY SSF53850 27 320 9.51E-65 T 23-04-2016 RD1_RS18445 aba99730cc492e98ff443e5f86084d40 327 Gene3D G3DSA:3.40.190.10 1 119 3.8E-37 T 23-04-2016 RD1_RS18445 aba99730cc492e98ff443e5f86084d40 327 Gene3D G3DSA:3.40.190.10 258 315 3.8E-37 T 23-04-2016 RD1_RS18445 aba99730cc492e98ff443e5f86084d40 327 PIRSF PIRSF002825 1 324 3.1E-75 T 23-04-2016 IPR026045 Ferric binding protein RD1_RS18445 aba99730cc492e98ff443e5f86084d40 327 PANTHER PTHR30006 1 327 4.5E-49 T 23-04-2016 RD1_RS10695 91dffe1baefb40f4bc1c40fc9b34e00f 450 SUPERFAMILY SSF53850 48 449 7.24E-37 T 23-04-2016 RD1_RS10695 91dffe1baefb40f4bc1c40fc9b34e00f 450 Pfam PF01547 Bacterial extracellular solute-binding protein 69 265 1.2E-13 T 23-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 RD1_RS10695 91dffe1baefb40f4bc1c40fc9b34e00f 450 PANTHER PTHR30061:SF2 52 429 6.6E-87 T 23-04-2016 RD1_RS10695 91dffe1baefb40f4bc1c40fc9b34e00f 450 PANTHER PTHR30061 52 429 6.6E-87 T 23-04-2016 RD1_RS10695 91dffe1baefb40f4bc1c40fc9b34e00f 450 Gene3D G3DSA:3.40.190.10 59 183 1.1E-7 T 23-04-2016 RD1_RS10695 91dffe1baefb40f4bc1c40fc9b34e00f 450 Gene3D G3DSA:3.40.190.10 184 381 4.5E-15 T 23-04-2016 RD1_RS18420 33b851cced3638904a2f7ae57d00cc85 65 Hamap MF_00422 Protein translocase subunit SecE [secE]. 4 59 11.518 T 23-04-2016 IPR022943 Preprotein translocase subunit SecE RD1_RS18420 33b851cced3638904a2f7ae57d00cc85 65 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 8 58 1.0E-16 T 23-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 RD1_RS18420 33b851cced3638904a2f7ae57d00cc85 65 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 8 61 6.7E-17 T 23-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 RD1_RS18420 33b851cced3638904a2f7ae57d00cc85 65 Gene3D G3DSA:1.20.5.1030 4 61 1.8E-21 T 23-04-2016 RD1_RS10960 b49594d6886b9493d0c3b4c7a7f96183 336 PANTHER PTHR34294 8 336 6.1E-92 T 23-04-2016 RD1_RS10960 b49594d6886b9493d0c3b4c7a7f96183 336 PANTHER PTHR34294:SF4 8 336 6.1E-92 T 23-04-2016 RD1_RS10960 b49594d6886b9493d0c3b4c7a7f96183 336 Gene3D G3DSA:1.10.10.10 33 75 2.2E-4 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS10960 b49594d6886b9493d0c3b4c7a7f96183 336 SUPERFAMILY SSF100950 77 334 4.1E-62 T 23-04-2016 RD1_RS10960 b49594d6886b9493d0c3b4c7a7f96183 336 Pfam PF04198 Putative sugar-binding domain 79 332 1.9E-58 T 23-04-2016 IPR007324 Sugar-binding domain, putative GO:0030246 RD1_RS10960 b49594d6886b9493d0c3b4c7a7f96183 336 Gene3D G3DSA:3.40.50.1360 76 333 1.2E-70 T 23-04-2016 RD1_RS03060 59c60b8ae61c61735ead7a946fc37cfd 395 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 395 172.542 T 23-04-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242|UniPathway: UPA00246 RD1_RS03060 59c60b8ae61c61735ead7a946fc37cfd 395 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 393 6.1E-116 T 23-04-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242|UniPathway: UPA00246 RD1_RS03060 59c60b8ae61c61735ead7a946fc37cfd 395 PANTHER PTHR30387 1 395 8.7E-121 T 23-04-2016 RD1_RS03060 59c60b8ae61c61735ead7a946fc37cfd 395 PIRSF PIRSF016049 1 395 2.1E-166 T 23-04-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242|UniPathway: UPA00246 RD1_RS03060 59c60b8ae61c61735ead7a946fc37cfd 395 Gene3D G3DSA:3.20.20.150 1 393 8.9E-129 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS03060 59c60b8ae61c61735ead7a946fc37cfd 395 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 394 2.0E-133 T 23-04-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242|UniPathway: UPA00246 RD1_RS03060 59c60b8ae61c61735ead7a946fc37cfd 395 SUPERFAMILY SSF51658 1 390 2.05E-75 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS03060 59c60b8ae61c61735ead7a946fc37cfd 395 PANTHER PTHR30387:SF2 1 395 8.7E-121 T 23-04-2016 RD1_RS05775 9d2cbe706b247e0fb875247d92942a0e 112 SUPERFAMILY SSF103481 37 110 4.18E-10 T 23-04-2016 RD1_RS05775 9d2cbe706b247e0fb875247d92942a0e 112 Pfam PF00892 EamA-like transporter family 4 109 1.1E-6 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS15825 73eaa704d770917e073fba9300898664 462 Pfam PF05598 Transposase domain (DUF772) 51 126 2.0E-23 T 23-04-2016 IPR008490 Transposase InsH, N-terminal RD1_RS15825 73eaa704d770917e073fba9300898664 462 Pfam PF13751 Transposase DDE domain 323 448 1.2E-16 T 23-04-2016 IPR025668 Transposase DDE domain RD1_RS15825 73eaa704d770917e073fba9300898664 462 PANTHER PTHR33408:SF2 15 451 2.2E-19 T 23-04-2016 RD1_RS15825 73eaa704d770917e073fba9300898664 462 PANTHER PTHR33408 15 451 2.2E-19 T 23-04-2016 RD1_RS17530 5700fd6a329495202fffd738cccd2854 1088 Pfam PF02514 CobN/Magnesium Chelatase 688 1078 2.6E-110 T 23-04-2016 IPR003672 CobN/magnesium chelatase GO:0009058 RD1_RS17530 5700fd6a329495202fffd738cccd2854 1088 Pfam PF02514 CobN/Magnesium Chelatase 177 677 3.0E-124 T 23-04-2016 IPR003672 CobN/magnesium chelatase GO:0009058 RD1_RS17530 5700fd6a329495202fffd738cccd2854 1088 PANTHER PTHR23304:SF96 26 1086 2.1E-212 T 23-04-2016 RD1_RS17530 5700fd6a329495202fffd738cccd2854 1088 PANTHER PTHR23304 26 1086 2.1E-212 T 23-04-2016 RD1_RS01435 817bb128210ba99bd8b2d4b87f322a6a 613 Pfam PF10110 Membrane domain of glycerophosphoryl diester phosphodiesterase 16 280 1.6E-9 T 23-04-2016 IPR018476 Glycerophosphoryl diester phosphodiesterase, membrane domain RD1_RS01435 817bb128210ba99bd8b2d4b87f322a6a 613 PANTHER PTHR23344:SF23 87 579 8.3E-58 T 23-04-2016 RD1_RS01435 817bb128210ba99bd8b2d4b87f322a6a 613 PANTHER PTHR23344 87 579 8.3E-58 T 23-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 RD1_RS01435 817bb128210ba99bd8b2d4b87f322a6a 613 SUPERFAMILY SSF51695 349 578 6.28E-64 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RD1_RS01435 817bb128210ba99bd8b2d4b87f322a6a 613 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 354 573 4.7E-29 T 23-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RD1_RS01435 817bb128210ba99bd8b2d4b87f322a6a 613 Gene3D G3DSA:3.20.20.190 341 580 4.2E-67 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RD1_RS00145 99991949d2a12bf1324e0c0379b67659 200 PANTHER PTHR35869 1 199 2.2E-13 T 23-04-2016 RD1_RS00145 99991949d2a12bf1324e0c0379b67659 200 SUPERFAMILY SSF89392 28 194 2.12E-25 T 23-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX RD1_RS00145 99991949d2a12bf1324e0c0379b67659 200 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 37 191 1.7E-25 T 23-04-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like RD1_RS00145 99991949d2a12bf1324e0c0379b67659 200 Gene3D G3DSA:2.50.20.10 29 197 8.8E-24 T 23-04-2016 RD1_RS09840 334366cc3b3ad34f2ec42a3b0a45dce1 231 Pfam PF01144 Coenzyme A transferase 7 215 8.7E-73 T 23-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RD1_RS09840 334366cc3b3ad34f2ec42a3b0a45dce1 231 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 23-04-2016 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 RD1_RS09840 334366cc3b3ad34f2ec42a3b0a45dce1 231 SUPERFAMILY SSF100950 2 226 3.19E-85 T 23-04-2016 RD1_RS09840 334366cc3b3ad34f2ec42a3b0a45dce1 231 Gene3D G3DSA:3.40.1080.10 2 216 4.7E-96 T 23-04-2016 RD1_RS09840 334366cc3b3ad34f2ec42a3b0a45dce1 231 SMART SM00882 5 217 2.2E-85 T 23-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RD1_RS09840 334366cc3b3ad34f2ec42a3b0a45dce1 231 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 216 5.0E-71 T 23-04-2016 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 RD1_RS09840 334366cc3b3ad34f2ec42a3b0a45dce1 231 PANTHER PTHR13707 1 231 9.1E-132 T 23-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RD1_RS10170 d32eadf7a45687b7a31754ecf52791e0 325 SUPERFAMILY SSF53850 118 287 7.37E-11 T 23-04-2016 RD1_RS10170 d32eadf7a45687b7a31754ecf52791e0 325 PANTHER PTHR30349 1 323 4.7E-75 T 23-04-2016 RD1_RS10170 d32eadf7a45687b7a31754ecf52791e0 325 PANTHER PTHR30349:SF7 1 323 4.7E-75 T 23-04-2016 RD1_RS10170 d32eadf7a45687b7a31754ecf52791e0 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 72 319 1.0E-29 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RD1_RS10170 d32eadf7a45687b7a31754ecf52791e0 325 PIRSF PIRSF017082 1 323 2.1E-90 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RD1_RS02190 9f1c862ae271043d506716002e615bc7 495 Pfam PF09731 Mitochondrial inner membrane protein 374 486 1.1E-6 T 23-04-2016 IPR019133 Mitochondrial inner membrane protein Mitofilin RD1_RS19115 30de28adea18496c1195e00c416a6a2d 150 SUPERFAMILY SSF103473 26 134 7.59E-5 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS07595 be9f8fe2c93b0a53d713a6713bc800b6 304 PANTHER PTHR30269 11 293 1.3E-76 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RD1_RS07595 be9f8fe2c93b0a53d713a6713bc800b6 304 PANTHER PTHR30269:SF15 11 293 1.3E-76 T 23-04-2016 RD1_RS07595 be9f8fe2c93b0a53d713a6713bc800b6 304 Pfam PF01925 Sulfite exporter TauE/SafE 18 283 1.8E-51 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RD1_RS15310 707cc53c10d82f9b23e9c13932149360 183 TIGRFAM TIGR03370 VPLPA-CTERM: VPLPA-CTERM protein sorting domain 156 180 1.4E-9 T 23-04-2016 IPR022472 VPLPA-CTERM protein sorting domain RD1_RS00265 3129f4d431d4e58c895767044f4b5d40 240 SUPERFAMILY SSF53955 50 226 4.22E-52 T 23-04-2016 IPR023346 Lysozyme-like domain RD1_RS00265 3129f4d431d4e58c895767044f4b5d40 240 PANTHER PTHR30400:SF0 20 223 1.3E-72 T 23-04-2016 RD1_RS00265 3129f4d431d4e58c895767044f4b5d40 240 Pfam PF00912 Transglycosylase 67 224 3.2E-43 T 23-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RD1_RS00265 3129f4d431d4e58c895767044f4b5d40 240 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 24 227 2.3E-61 T 23-04-2016 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 UniPathway: UPA00219 RD1_RS00265 3129f4d431d4e58c895767044f4b5d40 240 Gene3D G3DSA:1.10.3810.10 64 224 1.4E-49 T 23-04-2016 RD1_RS00265 3129f4d431d4e58c895767044f4b5d40 240 PANTHER PTHR30400 20 223 1.3E-72 T 23-04-2016 RD1_RS03225 7f0ef6348e725bb9eda0149af87cae1e 656 Gene3D G3DSA:3.40.50.980 12 198 3.4E-33 T 23-04-2016 RD1_RS03225 7f0ef6348e725bb9eda0149af87cae1e 656 PANTHER PTHR24096:SF151 7 618 1.1E-199 T 23-04-2016 RD1_RS03225 7f0ef6348e725bb9eda0149af87cae1e 656 Pfam PF00501 AMP-binding enzyme 19 476 2.1E-86 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RD1_RS03225 7f0ef6348e725bb9eda0149af87cae1e 656 Gene3D G3DSA:2.30.38.10 413 473 4.8E-13 T 23-04-2016 RD1_RS03225 7f0ef6348e725bb9eda0149af87cae1e 656 PANTHER PTHR24096 7 618 1.1E-199 T 23-04-2016 RD1_RS03225 7f0ef6348e725bb9eda0149af87cae1e 656 Gene3D G3DSA:3.40.50.980 345 402 2.1E-26 T 23-04-2016 RD1_RS03225 7f0ef6348e725bb9eda0149af87cae1e 656 Gene3D G3DSA:3.40.50.980 199 291 2.1E-26 T 23-04-2016 RD1_RS03225 7f0ef6348e725bb9eda0149af87cae1e 656 SUPERFAMILY SSF56801 348 616 9.42E-107 T 23-04-2016 RD1_RS03225 7f0ef6348e725bb9eda0149af87cae1e 656 SUPERFAMILY SSF56801 11 296 9.42E-107 T 23-04-2016 RD1_RS03225 7f0ef6348e725bb9eda0149af87cae1e 656 ProSitePatterns PS00455 Putative AMP-binding domain signature. 193 204 - T 23-04-2016 IPR020845 AMP-binding, conserved site RD1_RS15940 582d24fa4b00dad21c2ff2fbb569a79c 212 Gene3D G3DSA:3.40.50.300 9 211 2.7E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS15940 582d24fa4b00dad21c2ff2fbb569a79c 212 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 9 202 3.1E-46 T 23-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RD1_RS15940 582d24fa4b00dad21c2ff2fbb569a79c 212 PANTHER PTHR10344 9 212 4.1E-55 T 23-04-2016 RD1_RS15940 582d24fa4b00dad21c2ff2fbb569a79c 212 Pfam PF02223 Thymidylate kinase 14 201 2.0E-45 T 23-04-2016 RD1_RS15940 582d24fa4b00dad21c2ff2fbb569a79c 212 Hamap MF_00165 Thymidylate kinase [tmk]. 10 211 28.129 T 23-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RD1_RS15940 582d24fa4b00dad21c2ff2fbb569a79c 212 SUPERFAMILY SSF52540 8 210 8.4E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06770 106133a6bdd9efad46e62720396dc1aa 243 PANTHER PTHR12677 1 238 1.7E-28 T 23-04-2016 IPR015414 Transmembrane protein TMEM64/TMEM41 GO:0016021 RD1_RS06770 106133a6bdd9efad46e62720396dc1aa 243 Pfam PF09335 SNARE associated Golgi protein 76 195 2.7E-20 T 23-04-2016 IPR032816 SNARE associated Golgi protein RD1_RS01055 27adf6791a4d67ba4b616cd3b37aeaa0 341 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 14 322 1.3E-33 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS01055 27adf6791a4d67ba4b616cd3b37aeaa0 341 SUPERFAMILY SSF56219 9 339 1.32E-27 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS01055 27adf6791a4d67ba4b616cd3b37aeaa0 341 Gene3D G3DSA:3.60.10.10 12 62 1.8E-5 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS01055 27adf6791a4d67ba4b616cd3b37aeaa0 341 Gene3D G3DSA:3.60.10.10 97 339 1.8E-5 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS08695 f8e418144910f54ea2f814e8131f7bae 284 PANTHER PTHR42194:SF1 9 275 1.2E-67 T 23-04-2016 RD1_RS08695 f8e418144910f54ea2f814e8131f7bae 284 PANTHER PTHR42194 9 275 1.2E-67 T 23-04-2016 RD1_RS08695 f8e418144910f54ea2f814e8131f7bae 284 Gene3D G3DSA:3.20.20.150 12 281 1.7E-98 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS08695 f8e418144910f54ea2f814e8131f7bae 284 SUPERFAMILY SSF51658 33 223 5.33E-9 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS08695 f8e418144910f54ea2f814e8131f7bae 284 Pfam PF05114 Protein of unknown function (DUF692) 16 280 4.1E-103 T 23-04-2016 IPR007801 Uncharacterised protein family UPF0276 RD1_RS08790 afc705eab4333bcfeec2c6ae1afcbca3 146 Pfam PF05099 Tellurite resistance protein TerB 3 140 7.5E-37 T 23-04-2016 IPR007791 Co-chaperone DjlA, N-terminal RD1_RS08790 afc705eab4333bcfeec2c6ae1afcbca3 146 SUPERFAMILY SSF158682 6 140 2.62E-29 T 23-04-2016 IPR029024 TerB-like RD1_RS08790 afc705eab4333bcfeec2c6ae1afcbca3 146 Gene3D G3DSA:1.10.3680.10 5 139 1.0E-19 T 23-04-2016 IPR029024 TerB-like RD1_RS10335 e7ccdb2367cd14e4e04d15a2420bbff4 790 PANTHER PTHR30489:SF6 8 786 9.9E-139 T 23-04-2016 RD1_RS10335 e7ccdb2367cd14e4e04d15a2420bbff4 790 Pfam PF02687 FtsX-like permease family 224 340 8.9E-8 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RD1_RS10335 e7ccdb2367cd14e4e04d15a2420bbff4 790 Pfam PF02687 FtsX-like permease family 660 779 6.1E-8 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RD1_RS10335 e7ccdb2367cd14e4e04d15a2420bbff4 790 PANTHER PTHR30489 8 786 9.9E-139 T 23-04-2016 RD1_RS12415 e8d322fd5340a4a01a2cb12e876e0979 217 PANTHER PTHR12277:SF79 27 217 2.4E-49 T 23-04-2016 RD1_RS12415 e8d322fd5340a4a01a2cb12e876e0979 217 PANTHER PTHR12277 27 217 2.4E-49 T 23-04-2016 RD1_RS12415 e8d322fd5340a4a01a2cb12e876e0979 217 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 17 139 3.2E-8 T 23-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RD1_RS12415 e8d322fd5340a4a01a2cb12e876e0979 217 Gene3D G3DSA:3.40.50.1820 3 214 2.6E-60 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS12415 e8d322fd5340a4a01a2cb12e876e0979 217 SUPERFAMILY SSF53474 3 213 8.84E-52 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS13055 3aae6d88e303238d396f8cac6e4ea551 382 Gene3D G3DSA:2.30.330.10 210 285 3.5E-7 T 23-04-2016 RD1_RS13055 3aae6d88e303238d396f8cac6e4ea551 382 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 215 282 1.7E-11 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) RD1_RS13055 3aae6d88e303238d396f8cac6e4ea551 382 SUPERFAMILY SSF101801 213 286 7.46E-8 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) RD1_RS16195 7d0b5fc3472c84cc7faf5f99945abe3e 202 TIGRFAM TIGR03370 VPLPA-CTERM: VPLPA-CTERM protein sorting domain 178 201 3.1E-11 T 23-04-2016 IPR022472 VPLPA-CTERM protein sorting domain RD1_RS08720 f585fe1117972505ceef749b90c97e64 236 PRINTS PR00111 Alpha/beta hydrolase fold signature 73 86 9.4E-7 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS08720 f585fe1117972505ceef749b90c97e64 236 PRINTS PR00111 Alpha/beta hydrolase fold signature 175 189 9.4E-7 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS08720 f585fe1117972505ceef749b90c97e64 236 PRINTS PR00111 Alpha/beta hydrolase fold signature 59 72 9.4E-7 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS08720 f585fe1117972505ceef749b90c97e64 236 PANTHER PTHR10992 3 231 2.2E-31 T 23-04-2016 RD1_RS08720 f585fe1117972505ceef749b90c97e64 236 Gene3D G3DSA:3.40.50.1820 3 230 6.8E-39 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS08720 f585fe1117972505ceef749b90c97e64 236 Pfam PF12697 Alpha/beta hydrolase family 42 222 1.2E-12 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RD1_RS08720 f585fe1117972505ceef749b90c97e64 236 SUPERFAMILY SSF53474 3 229 8.92E-47 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS15765 015a180f2cba7f377a04c030c9b391b2 313 SUPERFAMILY SSF51430 1 298 6.42E-81 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS15765 015a180f2cba7f377a04c030c9b391b2 313 Pfam PF00248 Aldo/keto reductase family 16 297 3.5E-66 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS15765 015a180f2cba7f377a04c030c9b391b2 313 Gene3D G3DSA:3.20.20.100 10 302 2.6E-80 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS15765 015a180f2cba7f377a04c030c9b391b2 313 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 127 144 - T 23-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RD1_RS15765 015a180f2cba7f377a04c030c9b391b2 313 PANTHER PTHR11732 1 297 4.8E-91 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RD1_RS12765 06932ded38a58b30e4c99e8b2e2277fc 373 SUPERFAMILY SSF56935 7 373 1.13E-45 T 23-04-2016 RD1_RS12765 06932ded38a58b30e4c99e8b2e2277fc 373 Gene3D G3DSA:2.40.160.60 33 373 9.6E-50 T 23-04-2016 RD1_RS08785 b32ce17ea27c09bade1f0c3fb775ed86 251 Gene3D G3DSA:3.40.190.10 86 221 4.1E-5 T 23-04-2016 RD1_RS08785 b32ce17ea27c09bade1f0c3fb775ed86 251 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 75 220 3.5E-16 T 23-04-2016 RD1_RS08785 b32ce17ea27c09bade1f0c3fb775ed86 251 PANTHER PTHR35841 37 241 6.8E-20 T 23-04-2016 RD1_RS08785 b32ce17ea27c09bade1f0c3fb775ed86 251 SUPERFAMILY SSF53850 61 222 5.44E-9 T 23-04-2016 RD1_RS15930 e477919b04faeec2ec70c291bb944ed1 277 Pfam PF05036 Sporulation related domain 205 276 2.5E-13 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 RD1_RS15930 e477919b04faeec2ec70c291bb944ed1 277 SUPERFAMILY SSF110997 205 275 3.53E-13 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 RD1_RS15930 e477919b04faeec2ec70c291bb944ed1 277 Gene3D G3DSA:3.30.70.1070 205 274 2.0E-11 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 RD1_RS14545 9fc2d69bf5fa4ea656cac267c2e61dc6 332 SUPERFAMILY SSF51445 7 286 8.21E-71 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RD1_RS14545 9fc2d69bf5fa4ea656cac267c2e61dc6 332 PANTHER PTHR30480 8 279 2.0E-81 T 23-04-2016 RD1_RS14545 9fc2d69bf5fa4ea656cac267c2e61dc6 332 Gene3D G3DSA:3.20.20.300 7 289 3.5E-69 T 23-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RD1_RS14545 9fc2d69bf5fa4ea656cac267c2e61dc6 332 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 31 295 4.7E-49 T 23-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RD1_RS14545 9fc2d69bf5fa4ea656cac267c2e61dc6 332 PANTHER PTHR30480:SF7 8 279 2.0E-81 T 23-04-2016 RD1_RS17890 54d88b12ef715731c0a1d0ff3d34ac12 222 PANTHER PTHR22854 1 214 3.7E-53 T 23-04-2016 RD1_RS17890 54d88b12ef715731c0a1d0ff3d34ac12 222 PANTHER PTHR22854:SF6 1 214 3.7E-53 T 23-04-2016 RD1_RS17890 54d88b12ef715731c0a1d0ff3d34ac12 222 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 5 216 38.939 T 23-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 RD1_RS17890 54d88b12ef715731c0a1d0ff3d34ac12 222 SUPERFAMILY SSF51366 6 213 5.49E-59 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RD1_RS17890 54d88b12ef715731c0a1d0ff3d34ac12 222 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 7 212 2.3E-46 T 23-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 RD1_RS17890 54d88b12ef715731c0a1d0ff3d34ac12 222 Gene3D G3DSA:3.20.20.70 6 214 3.2E-62 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS05680 20b3ba50a8a1ce8403c2a53581c443d8 68 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 23-04-2016 IPR019844 Cold-shock conserved site RD1_RS05680 20b3ba50a8a1ce8403c2a53581c443d8 68 PANTHER PTHR11544 1 60 2.5E-23 T 23-04-2016 RD1_RS05680 20b3ba50a8a1ce8403c2a53581c443d8 68 PRINTS PR00050 Cold shock protein signature 40 58 1.3E-14 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS05680 20b3ba50a8a1ce8403c2a53581c443d8 68 PRINTS PR00050 Cold shock protein signature 25 34 1.3E-14 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS05680 20b3ba50a8a1ce8403c2a53581c443d8 68 PRINTS PR00050 Cold shock protein signature 4 19 1.3E-14 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS05680 20b3ba50a8a1ce8403c2a53581c443d8 68 SMART SM00357 3 68 8.6E-25 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 RD1_RS05680 20b3ba50a8a1ce8403c2a53581c443d8 68 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 7.5E-25 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RD1_RS05680 20b3ba50a8a1ce8403c2a53581c443d8 68 PIRSF PIRSF002599 1 68 2.5E-22 T 23-04-2016 IPR012156 Cold shock, CspA GO:0003676 RD1_RS05680 20b3ba50a8a1ce8403c2a53581c443d8 68 SUPERFAMILY SSF50249 1 65 2.57E-22 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS05680 20b3ba50a8a1ce8403c2a53581c443d8 68 Gene3D G3DSA:2.40.50.140 1 66 6.1E-27 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RD1_RS03895 a73ab1ad22124abc79caa7cdf052bb66 340 PANTHER PTHR33376 1 339 2.8E-51 T 23-04-2016 RD1_RS03895 a73ab1ad22124abc79caa7cdf052bb66 340 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 50 316 7.0E-37 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS02515 7033d5f1875f370dfa9839f38ff2b746 249 Gene3D G3DSA:3.40.50.300 2 243 2.3E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02515 7033d5f1875f370dfa9839f38ff2b746 249 PANTHER PTHR24220 7 249 1.4E-84 T 23-04-2016 RD1_RS02515 7033d5f1875f370dfa9839f38ff2b746 249 Pfam PF00005 ABC transporter 22 177 2.8E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS02515 7033d5f1875f370dfa9839f38ff2b746 249 SUPERFAMILY SSF52540 4 245 4.33E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02515 7033d5f1875f370dfa9839f38ff2b746 249 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 224 246 3.2E-6 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RD1_RS02515 7033d5f1875f370dfa9839f38ff2b746 249 SMART SM00382 30 227 2.2E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS02515 7033d5f1875f370dfa9839f38ff2b746 249 PANTHER PTHR24220:SF358 7 249 1.4E-84 T 23-04-2016 RD1_RS16955 ab52f490b022b3ac196aacd0e2151819 577 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 125 135 - T 23-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS16955 ab52f490b022b3ac196aacd0e2151819 577 Pfam PF00920 Dehydratase family 42 558 9.4E-173 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS16955 ab52f490b022b3ac196aacd0e2151819 577 SUPERFAMILY SSF52016 379 564 1.02E-56 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RD1_RS16955 ab52f490b022b3ac196aacd0e2151819 577 SUPERFAMILY SSF143975 5 377 1.57E-121 T 23-04-2016 RD1_RS16955 ab52f490b022b3ac196aacd0e2151819 577 PANTHER PTHR21000 3 577 0.0 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RD1_RS16955 ab52f490b022b3ac196aacd0e2151819 577 PANTHER PTHR21000:SF2 3 577 0.0 T 23-04-2016 RD1_RS10515 5994ea95b8173b9adf8082680205b7d3 142 Gene3D G3DSA:3.10.450.50 4 130 2.7E-13 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS10515 5994ea95b8173b9adf8082680205b7d3 142 Pfam PF07366 SnoaL-like polyketide cyclase 7 124 1.7E-7 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RD1_RS10515 5994ea95b8173b9adf8082680205b7d3 142 SUPERFAMILY SSF54427 5 130 9.32E-19 T 23-04-2016 IPR032710 NTF2-like domain RD1_RS07610 388670b70cc434984b3a471b5422c426 517 SMART SM00382 294 500 1.2 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS07610 388670b70cc434984b3a471b5422c426 517 SMART SM00382 41 229 1.2E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS07610 388670b70cc434984b3a471b5422c426 517 ProSitePatterns PS00211 ABC transporters family signature. 417 431 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS07610 388670b70cc434984b3a471b5422c426 517 Pfam PF00005 ABC transporter 285 444 2.6E-13 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS07610 388670b70cc434984b3a471b5422c426 517 Pfam PF00005 ABC transporter 33 180 2.6E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS07610 388670b70cc434984b3a471b5422c426 517 SUPERFAMILY SSF52540 15 238 2.04E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07610 388670b70cc434984b3a471b5422c426 517 Gene3D G3DSA:3.40.50.300 259 502 1.4E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07610 388670b70cc434984b3a471b5422c426 517 PANTHER PTHR24220:SF239 18 397 1.1E-168 T 23-04-2016 RD1_RS07610 388670b70cc434984b3a471b5422c426 517 PANTHER PTHR24220 18 397 1.1E-168 T 23-04-2016 RD1_RS07610 388670b70cc434984b3a471b5422c426 517 Gene3D G3DSA:3.40.50.300 14 238 2.9E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS07610 388670b70cc434984b3a471b5422c426 517 SUPERFAMILY SSF52540 267 496 2.66E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11930 da0f0b5294137a0624f0d66cbbfc85cb 450 PANTHER PTHR22939:SF78 224 448 7.4E-46 T 23-04-2016 RD1_RS11930 da0f0b5294137a0624f0d66cbbfc85cb 450 PANTHER PTHR22939:SF78 1 10 7.4E-46 T 23-04-2016 RD1_RS11930 da0f0b5294137a0624f0d66cbbfc85cb 450 SMART SM00228 139 206 1.1 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS11930 da0f0b5294137a0624f0d66cbbfc85cb 450 SMART SM00228 209 279 6.4E-7 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS11930 da0f0b5294137a0624f0d66cbbfc85cb 450 SUPERFAMILY SSF50156 215 288 3.29E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS11930 da0f0b5294137a0624f0d66cbbfc85cb 450 PANTHER PTHR22939 224 448 7.4E-46 T 23-04-2016 RD1_RS11930 da0f0b5294137a0624f0d66cbbfc85cb 450 SUPERFAMILY SSF50156 122 215 3.02E-9 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS11930 da0f0b5294137a0624f0d66cbbfc85cb 450 Pfam PF13180 PDZ domain 224 286 6.8E-8 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS11930 da0f0b5294137a0624f0d66cbbfc85cb 450 PANTHER PTHR22939 1 10 7.4E-46 T 23-04-2016 RD1_RS11930 da0f0b5294137a0624f0d66cbbfc85cb 450 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 13 447 3.0E-82 T 23-04-2016 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 RD1_RS11930 da0f0b5294137a0624f0d66cbbfc85cb 450 Gene3D G3DSA:2.30.42.10 116 215 1.3E-11 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS11930 da0f0b5294137a0624f0d66cbbfc85cb 450 Gene3D G3DSA:2.30.42.10 223 289 1.2E-17 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RD1_RS11930 da0f0b5294137a0624f0d66cbbfc85cb 450 Pfam PF02163 Peptidase family M50 19 438 1.5E-72 T 23-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 RD1_RS08080 3d8c2f36f40bec713e4ca60d9272f808 367 Pfam PF00155 Aminotransferase class I and II 37 357 1.2E-42 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RD1_RS08080 3d8c2f36f40bec713e4ca60d9272f808 367 PANTHER PTHR11751:SF3 18 366 7.0E-50 T 23-04-2016 RD1_RS08080 3d8c2f36f40bec713e4ca60d9272f808 367 SUPERFAMILY SSF53383 35 361 1.28E-66 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS08080 3d8c2f36f40bec713e4ca60d9272f808 367 PANTHER PTHR11751 18 366 7.0E-50 T 23-04-2016 RD1_RS08080 3d8c2f36f40bec713e4ca60d9272f808 367 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 218 227 - T 23-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 RD1_RS08080 3d8c2f36f40bec713e4ca60d9272f808 367 Gene3D G3DSA:3.40.640.10 48 261 6.1E-50 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS08080 3d8c2f36f40bec713e4ca60d9272f808 367 Gene3D G3DSA:3.90.1150.10 262 361 3.4E-12 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS19220 89f12da29acd0638aba46e4f1401a3b5 311 Pfam PF13103 TonB C terminal 229 302 3.0E-11 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 RD1_RS19220 89f12da29acd0638aba46e4f1401a3b5 311 Gene3D G3DSA:3.30.1150.10 210 303 2.2E-17 T 23-04-2016 RD1_RS19220 89f12da29acd0638aba46e4f1401a3b5 311 SUPERFAMILY SSF74653 225 308 6.15E-15 T 23-04-2016 RD1_RS19220 89f12da29acd0638aba46e4f1401a3b5 311 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 244 308 7.5E-16 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 RD1_RS03160 c86015e74ee7efd6993db2d6d3511e84 282 PANTHER PTHR11820:SF71 1 278 2.9E-163 T 23-04-2016 RD1_RS03160 c86015e74ee7efd6993db2d6d3511e84 282 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 73 278 4.5E-72 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RD1_RS03160 c86015e74ee7efd6993db2d6d3511e84 282 SUPERFAMILY SSF56529 62 279 6.02E-81 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RD1_RS03160 c86015e74ee7efd6993db2d6d3511e84 282 PANTHER PTHR11820 1 278 2.9E-163 T 23-04-2016 RD1_RS03160 c86015e74ee7efd6993db2d6d3511e84 282 Gene3D G3DSA:3.90.850.10 67 280 4.9E-89 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RD1_RS14790 5463911d9991adf8b9f8a3e6f8ebc303 151 PANTHER PTHR30009 1 151 2.2E-22 T 23-04-2016 RD1_RS14790 5463911d9991adf8b9f8a3e6f8ebc303 151 PANTHER PTHR30009:SF7 1 151 2.2E-22 T 23-04-2016 RD1_RS14790 5463911d9991adf8b9f8a3e6f8ebc303 151 Pfam PF03918 Cytochrome C biogenesis protein 7 149 6.3E-49 T 23-04-2016 IPR005616 CcmH/CycL/Ccl2/NrfF family RD1_RS03145 8c9bf4bcf28885cd78531fd5c5fa3a65 295 PIRSF PIRSF000103 1 295 2.3E-69 T 23-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 RD1_RS03145 8c9bf4bcf28885cd78531fd5c5fa3a65 295 SUPERFAMILY SSF48179 164 293 5.21E-31 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RD1_RS03145 8c9bf4bcf28885cd78531fd5c5fa3a65 295 Gene3D G3DSA:1.10.1040.10 168 293 4.9E-31 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RD1_RS03145 8c9bf4bcf28885cd78531fd5c5fa3a65 295 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 284 4.3E-26 T 23-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RD1_RS03145 8c9bf4bcf28885cd78531fd5c5fa3a65 295 Gene3D G3DSA:3.40.50.720 3 167 7.0E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03145 8c9bf4bcf28885cd78531fd5c5fa3a65 295 PANTHER PTHR22981 1 294 8.8E-87 T 23-04-2016 RD1_RS03145 8c9bf4bcf28885cd78531fd5c5fa3a65 295 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 6 161 4.2E-47 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 RD1_RS03145 8c9bf4bcf28885cd78531fd5c5fa3a65 295 SUPERFAMILY SSF51735 6 164 2.78E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS13360 dbc2f321e7ed8930370dfd133c74e46d 180 Pfam PF11749 Protein of unknown function (DUF3305) 3 143 3.6E-46 T 23-04-2016 IPR021736 Protein of unknown function DUF3305 RD1_RS04330 5c38c7d841c524ec7dbf73628e07630b 152 SUPERFAMILY SSF55298 1 151 3.93E-52 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RD1_RS04330 5c38c7d841c524ec7dbf73628e07630b 152 PANTHER PTHR11803:SF2 5 152 2.2E-46 T 23-04-2016 RD1_RS04330 5c38c7d841c524ec7dbf73628e07630b 152 PANTHER PTHR11803 5 152 2.2E-46 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family RD1_RS04330 5c38c7d841c524ec7dbf73628e07630b 152 Gene3D G3DSA:3.30.1330.40 2 151 5.3E-60 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RD1_RS04330 5c38c7d841c524ec7dbf73628e07630b 152 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 5 144 1.0E-32 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RD1_RS02325 dba7b1e92db37a0c1dbd9327f076554d 285 PANTHER PTHR12110:SF27 4 284 1.1E-52 T 23-04-2016 RD1_RS02325 dba7b1e92db37a0c1dbd9327f076554d 285 PANTHER PTHR12110 4 284 1.1E-52 T 23-04-2016 RD1_RS02325 dba7b1e92db37a0c1dbd9327f076554d 285 Pfam PF01261 Xylose isomerase-like TIM barrel 54 236 2.0E-24 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS02325 dba7b1e92db37a0c1dbd9327f076554d 285 SUPERFAMILY SSF51658 25 267 1.44E-47 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS02325 dba7b1e92db37a0c1dbd9327f076554d 285 Gene3D G3DSA:3.20.20.150 11 284 4.6E-51 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS17790 7215ff2d7b4d9725d6418e2a12f5e630 352 PANTHER PTHR12110:SF17 23 80 6.4E-32 T 23-04-2016 RD1_RS17790 7215ff2d7b4d9725d6418e2a12f5e630 352 PANTHER PTHR12110:SF17 103 338 6.4E-32 T 23-04-2016 RD1_RS17790 7215ff2d7b4d9725d6418e2a12f5e630 352 Gene3D G3DSA:3.20.20.150 9 324 1.8E-71 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS17790 7215ff2d7b4d9725d6418e2a12f5e630 352 PANTHER PTHR12110 23 80 6.4E-32 T 23-04-2016 RD1_RS17790 7215ff2d7b4d9725d6418e2a12f5e630 352 PANTHER PTHR12110 103 338 6.4E-32 T 23-04-2016 RD1_RS17790 7215ff2d7b4d9725d6418e2a12f5e630 352 SUPERFAMILY SSF51658 18 347 4.45E-63 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS17790 7215ff2d7b4d9725d6418e2a12f5e630 352 Pfam PF07582 AP endonuclease family 2 C terminus 280 334 2.7E-21 T 23-04-2016 IPR011418 AP endonuclease, family 2, C-terminal RD1_RS17790 7215ff2d7b4d9725d6418e2a12f5e630 352 Pfam PF01261 Xylose isomerase-like TIM barrel 29 279 3.0E-38 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS16950 7d464494aa86a8e76679b171440c3bb7 282 Gene3D G3DSA:1.10.150.20 104 135 4.3E-5 T 23-04-2016 RD1_RS16950 7d464494aa86a8e76679b171440c3bb7 282 Pfam PF04002 RadC-like JAB domain 161 279 2.2E-44 T 23-04-2016 IPR025657 RadC-like JAB domain RD1_RS16950 7d464494aa86a8e76679b171440c3bb7 282 TIGRFAM TIGR00608 radc: DNA repair protein RadC 68 281 6.4E-72 T 23-04-2016 IPR001405 RadC protein RD1_RS16950 7d464494aa86a8e76679b171440c3bb7 282 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 230 235 - T 23-04-2016 IPR020891 Uncharacterised protein family UPF0758, conserved site RD1_RS16950 7d464494aa86a8e76679b171440c3bb7 282 SUPERFAMILY SSF102712 208 247 9.94E-5 T 23-04-2016 RD1_RS16950 7d464494aa86a8e76679b171440c3bb7 282 SUPERFAMILY SSF47781 72 140 5.93E-9 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RD1_RS16950 7d464494aa86a8e76679b171440c3bb7 282 PANTHER PTHR30471:SF3 57 281 2.2E-78 T 23-04-2016 RD1_RS16950 7d464494aa86a8e76679b171440c3bb7 282 Gene3D G3DSA:3.40.140.10 157 281 2.3E-49 T 23-04-2016 RD1_RS16950 7d464494aa86a8e76679b171440c3bb7 282 PANTHER PTHR30471 57 281 2.2E-78 T 23-04-2016 RD1_RS01345 9d369fc97fdb9d71ebcd2ccb4ca7f63c 502 Pfam PF09898 Uncharacterized protein conserved in bacteria (DUF2125) 276 487 1.7E-9 T 23-04-2016 IPR018666 Protein of unknown function DUF2125 RD1_RS02595 9d5453bf2fe5448f35268e4e199e1487 230 SUPERFAMILY SSF52540 1 225 2.38E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02595 9d5453bf2fe5448f35268e4e199e1487 230 PANTHER PTHR24220 1 222 1.7E-75 T 23-04-2016 RD1_RS02595 9d5453bf2fe5448f35268e4e199e1487 230 SMART SM00382 24 207 1.5E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS02595 9d5453bf2fe5448f35268e4e199e1487 230 Gene3D G3DSA:3.40.50.300 17 221 2.3E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02595 9d5453bf2fe5448f35268e4e199e1487 230 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 2 208 2.3E-75 T 23-04-2016 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0006810|GO:0016021|GO:0042626 RD1_RS02595 9d5453bf2fe5448f35268e4e199e1487 230 PANTHER PTHR24220:SF439 1 222 1.7E-75 T 23-04-2016 RD1_RS02595 9d5453bf2fe5448f35268e4e199e1487 230 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS02595 9d5453bf2fe5448f35268e4e199e1487 230 Pfam PF00005 ABC transporter 18 158 1.1E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS16530 56a446a65d8f4c4681d3956c5302824e 358 SUPERFAMILY SSF111369 148 271 1.44E-9 T 23-04-2016 RD1_RS16530 56a446a65d8f4c4681d3956c5302824e 358 Gene3D G3DSA:2.40.50.100 198 231 1.0E-17 T 23-04-2016 RD1_RS16530 56a446a65d8f4c4681d3956c5302824e 358 Gene3D G3DSA:2.40.50.100 45 78 1.0E-17 T 23-04-2016 RD1_RS16530 56a446a65d8f4c4681d3956c5302824e 358 PANTHER PTHR30367 13 310 6.1E-58 T 23-04-2016 RD1_RS16530 56a446a65d8f4c4681d3956c5302824e 358 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 44 285 1.3E-19 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RD1_RS16530 56a446a65d8f4c4681d3956c5302824e 358 Gene3D G3DSA:1.20.1600.10 84 172 1.5E-4 T 23-04-2016 RD1_RS16530 56a446a65d8f4c4681d3956c5302824e 358 SUPERFAMILY SSF111369 42 126 1.16E-14 T 23-04-2016 RD1_RS11735 5c5171ecd6950f6f944b2ce29b65fbf0 206 PANTHER PTHR24220:SF508 4 187 3.3E-56 T 23-04-2016 RD1_RS11735 5c5171ecd6950f6f944b2ce29b65fbf0 206 Pfam PF00005 ABC transporter 18 144 1.3E-23 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS11735 5c5171ecd6950f6f944b2ce29b65fbf0 206 Gene3D G3DSA:3.40.50.300 4 174 5.4E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11735 5c5171ecd6950f6f944b2ce29b65fbf0 206 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 4 186 3.3E-66 T 23-04-2016 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 RD1_RS11735 5c5171ecd6950f6f944b2ce29b65fbf0 206 SMART SM00382 27 190 3.4E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS11735 5c5171ecd6950f6f944b2ce29b65fbf0 206 PANTHER PTHR24220 4 187 3.3E-56 T 23-04-2016 RD1_RS11735 5c5171ecd6950f6f944b2ce29b65fbf0 206 ProSitePatterns PS00211 ABC transporters family signature. 117 131 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS11735 5c5171ecd6950f6f944b2ce29b65fbf0 206 SUPERFAMILY SSF52540 3 174 3.8E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03115 7612a7c2c4bba17569578f732b3e904f 540 PANTHER PTHR33362:SF7 1 229 1.7E-71 T 23-04-2016 RD1_RS03115 7612a7c2c4bba17569578f732b3e904f 540 PANTHER PTHR33362:SF7 312 540 1.7E-71 T 23-04-2016 RD1_RS03115 7612a7c2c4bba17569578f732b3e904f 540 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 12 534 2.0E-68 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS03115 7612a7c2c4bba17569578f732b3e904f 540 PANTHER PTHR33362 1 229 1.7E-71 T 23-04-2016 RD1_RS03115 7612a7c2c4bba17569578f732b3e904f 540 PANTHER PTHR33362 312 540 1.7E-71 T 23-04-2016 RD1_RS05425 19ea6fa8b90954f87e97dc9de3d8d1fe 240 Pfam PF13302 Acetyltransferase (GNAT) domain 45 171 2.5E-10 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS05425 19ea6fa8b90954f87e97dc9de3d8d1fe 240 PANTHER PTHR13256 10 219 1.1E-86 T 23-04-2016 RD1_RS05425 19ea6fa8b90954f87e97dc9de3d8d1fe 240 PANTHER PTHR13256:SF22 10 219 1.1E-86 T 23-04-2016 RD1_RS05425 19ea6fa8b90954f87e97dc9de3d8d1fe 240 Gene3D G3DSA:3.40.630.30 15 212 1.8E-51 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS05425 19ea6fa8b90954f87e97dc9de3d8d1fe 240 SUPERFAMILY SSF55729 35 196 1.58E-33 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS02605 4ee243f8a47eca91ca07bfa6e14855e6 208 PANTHER PTHR35802:SF1 5 204 3.7E-37 T 23-04-2016 RD1_RS02605 4ee243f8a47eca91ca07bfa6e14855e6 208 PANTHER PTHR35802 5 204 3.7E-37 T 23-04-2016 RD1_RS02605 4ee243f8a47eca91ca07bfa6e14855e6 208 PIRSF PIRSF010372 1 205 1.6E-36 T 23-04-2016 IPR007396 Transcriptional regulator PAI 2-type RD1_RS02605 4ee243f8a47eca91ca07bfa6e14855e6 208 Pfam PF04299 Putative FMN-binding domain 1 159 1.3E-36 T 23-04-2016 IPR007396 Transcriptional regulator PAI 2-type RD1_RS02605 4ee243f8a47eca91ca07bfa6e14855e6 208 SUPERFAMILY SSF50475 15 182 7.64E-31 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS02605 4ee243f8a47eca91ca07bfa6e14855e6 208 Gene3D G3DSA:2.30.110.10 1 198 4.2E-52 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS00750 deab0350b4472ebcde26722c88dae5d0 119 SUPERFAMILY SSF140566 10 66 3.79E-7 T 23-04-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 RD1_RS00750 deab0350b4472ebcde26722c88dae5d0 119 Gene3D G3DSA:1.20.58.300 11 77 5.4E-6 T 23-04-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 RD1_RS15345 81de3125a96abdce45622b731416264f 625 TIGRFAM TIGR01651 CobT: cobaltochelatase, CobT subunit 10 610 2.6E-244 T 23-04-2016 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RD1_RS15345 81de3125a96abdce45622b731416264f 625 SMART SM00327 403 612 1.3E-10 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS15345 81de3125a96abdce45622b731416264f 625 SUPERFAMILY SSF53300 406 603 9.32E-16 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS15345 81de3125a96abdce45622b731416264f 625 Gene3D G3DSA:3.40.50.410 406 581 1.7E-8 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS15345 81de3125a96abdce45622b731416264f 625 PIRSF PIRSF031715 1 618 1.6E-257 T 23-04-2016 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RD1_RS15345 81de3125a96abdce45622b731416264f 625 Pfam PF11775 Cobalamin biosynthesis protein CobT VWA domain 392 608 4.8E-102 T 23-04-2016 IPR025861 Cobalamin biosynthesis protein CobT VWA domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RD1_RS15345 81de3125a96abdce45622b731416264f 625 Pfam PF06213 Cobalamin biosynthesis protein CobT 7 280 4.9E-94 T 23-04-2016 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RD1_RS01390 acb9de741428cd1427af0cf57029e99a 366 PANTHER PTHR13370:SF8 15 278 1.5E-54 T 23-04-2016 RD1_RS01390 acb9de741428cd1427af0cf57029e99a 366 Gene3D G3DSA:3.40.50.150 11 264 1.2E-74 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS01390 acb9de741428cd1427af0cf57029e99a 366 SUPERFAMILY SSF53335 12 262 3.33E-68 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS01390 acb9de741428cd1427af0cf57029e99a 366 Pfam PF01555 DNA methylase 34 256 4.9E-52 T 23-04-2016 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 RD1_RS01390 acb9de741428cd1427af0cf57029e99a 366 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 37 43 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RD1_RS01390 acb9de741428cd1427af0cf57029e99a 366 PANTHER PTHR13370 15 278 1.5E-54 T 23-04-2016 RD1_RS01390 acb9de741428cd1427af0cf57029e99a 366 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 197 214 1.2E-38 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RD1_RS01390 acb9de741428cd1427af0cf57029e99a 366 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 216 234 1.2E-38 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RD1_RS01390 acb9de741428cd1427af0cf57029e99a 366 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 82 102 1.2E-38 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RD1_RS01390 acb9de741428cd1427af0cf57029e99a 366 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 33 47 1.2E-38 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RD1_RS01390 acb9de741428cd1427af0cf57029e99a 366 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 239 259 1.2E-38 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RD1_RS08690 0a0ddf907c00b5e5412390c2fa0ee3c1 252 Pfam PF09836 Putative DNA-binding domain 5 95 2.9E-21 T 23-04-2016 IPR018640 Putative DNA-binding domain, bacteria RD1_RS09760 d726741e17ac9035dd1f69329611f3f9 435 Gene3D G3DSA:3.40.50.300 269 362 3.5E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09760 d726741e17ac9035dd1f69329611f3f9 435 Gene3D G3DSA:3.40.50.300 138 236 3.5E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09760 d726741e17ac9035dd1f69329611f3f9 435 SUPERFAMILY SSF52540 255 364 8.3E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS09760 d726741e17ac9035dd1f69329611f3f9 435 SUPERFAMILY SSF52540 58 191 8.3E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS06545 8b21f131f6f45c71b5798f3703ac3b52 350 SUPERFAMILY SSF51735 13 347 1.69E-98 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS06545 8b21f131f6f45c71b5798f3703ac3b52 350 Gene3D G3DSA:3.40.50.720 149 304 5.0E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS06545 8b21f131f6f45c71b5798f3703ac3b52 350 Gene3D G3DSA:3.30.1780.10 14 148 2.6E-40 T 23-04-2016 IPR023401 Ornithine cyclodeaminase, N-terminal RD1_RS06545 8b21f131f6f45c71b5798f3703ac3b52 350 PANTHER PTHR13812 62 334 3.0E-45 T 23-04-2016 RD1_RS06545 8b21f131f6f45c71b5798f3703ac3b52 350 PANTHER PTHR13812:SF19 62 334 3.0E-45 T 23-04-2016 RD1_RS06545 8b21f131f6f45c71b5798f3703ac3b52 350 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 18 323 6.5E-119 T 23-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin RD1_RS00290 9738472f3cf905b207de9835e5c98d6f 267 PANTHER PTHR30622:SF4 1 264 1.1E-74 T 23-04-2016 RD1_RS00290 9738472f3cf905b207de9835e5c98d6f 267 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 265 15.207 T 23-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RD1_RS00290 9738472f3cf905b207de9835e5c98d6f 267 PANTHER PTHR30622 1 264 1.1E-74 T 23-04-2016 RD1_RS00290 9738472f3cf905b207de9835e5c98d6f 267 Pfam PF02673 Bacitracin resistance protein BacA 7 260 1.7E-59 T 23-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RD1_RS03240 8661113579712a0cd4fc13b8addbc521 112 Pfam PF09851 Short C-terminal domain 7 33 9.4E-8 T 23-04-2016 IPR018649 SHOCT domain RD1_RS09510 a17f4ea0a595dddf51bbbf244ba57e19 131 Gene3D G3DSA:1.10.760.10 12 130 7.2E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS09510 a17f4ea0a595dddf51bbbf244ba57e19 131 Pfam PF00034 Cytochrome c 22 129 5.3E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS09510 a17f4ea0a595dddf51bbbf244ba57e19 131 SUPERFAMILY SSF46626 5 130 2.06E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS01010 7f2ab30bd0654947fc3e0f0dc4c38ff7 282 Gene3D G3DSA:3.20.20.70 1 276 1.2E-72 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS01010 7f2ab30bd0654947fc3e0f0dc4c38ff7 282 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 274 3.7E-68 T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RD1_RS01010 7f2ab30bd0654947fc3e0f0dc4c38ff7 282 PANTHER PTHR30304 1 250 4.2E-53 T 23-04-2016 RD1_RS01010 7f2ab30bd0654947fc3e0f0dc4c38ff7 282 SUPERFAMILY SSF51569 3 276 5.13E-81 T 23-04-2016 RD1_RS01010 7f2ab30bd0654947fc3e0f0dc4c38ff7 282 PIRSF PIRSF001359 1 279 1.9E-60 T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RD1_RS06445 b350d0dc59e12838f7a478ef18038f7a 456 PRINTS PR00463 E-class P450 group I signature 404 427 1.3E-17 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RD1_RS06445 b350d0dc59e12838f7a478ef18038f7a 456 PRINTS PR00463 E-class P450 group I signature 361 385 1.3E-17 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RD1_RS06445 b350d0dc59e12838f7a478ef18038f7a 456 PRINTS PR00463 E-class P450 group I signature 394 404 1.3E-17 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RD1_RS06445 b350d0dc59e12838f7a478ef18038f7a 456 PRINTS PR00463 E-class P450 group I signature 259 276 1.3E-17 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RD1_RS06445 b350d0dc59e12838f7a478ef18038f7a 456 PRINTS PR00463 E-class P450 group I signature 279 305 1.3E-17 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RD1_RS06445 b350d0dc59e12838f7a478ef18038f7a 456 PANTHER PTHR24291 60 451 8.9E-93 T 23-04-2016 RD1_RS06445 b350d0dc59e12838f7a478ef18038f7a 456 Gene3D G3DSA:1.10.630.10 55 455 4.8E-103 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS06445 b350d0dc59e12838f7a478ef18038f7a 456 PANTHER PTHR24291:SF46 60 451 8.9E-93 T 23-04-2016 RD1_RS06445 b350d0dc59e12838f7a478ef18038f7a 456 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 397 406 - T 23-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 RD1_RS06445 b350d0dc59e12838f7a478ef18038f7a 456 Pfam PF00067 Cytochrome P450 57 446 2.6E-77 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS06445 b350d0dc59e12838f7a478ef18038f7a 456 SUPERFAMILY SSF48264 56 455 7.07E-96 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS06445 b350d0dc59e12838f7a478ef18038f7a 456 PRINTS PR00385 P450 superfamily signature 270 287 1.0E-12 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS06445 b350d0dc59e12838f7a478ef18038f7a 456 PRINTS PR00385 P450 superfamily signature 395 404 1.0E-12 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS06445 b350d0dc59e12838f7a478ef18038f7a 456 PRINTS PR00385 P450 superfamily signature 322 333 1.0E-12 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS06445 b350d0dc59e12838f7a478ef18038f7a 456 PRINTS PR00385 P450 superfamily signature 404 415 1.0E-12 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RD1_RS15190 146c53a920cfbf236d9e681dc9b9773b 184 PANTHER PTHR39336 2 179 7.3E-43 T 23-04-2016 RD1_RS15190 146c53a920cfbf236d9e681dc9b9773b 184 SUPERFAMILY SSF50475 8 115 3.09E-11 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS15190 146c53a920cfbf236d9e681dc9b9773b 184 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 9 99 4.2E-8 T 23-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RD1_RS15190 146c53a920cfbf236d9e681dc9b9773b 184 Gene3D G3DSA:2.30.110.10 5 125 3.5E-14 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RD1_RS05210 038e2fa2d7285bfc1241388c070fdcb8 202 SUPERFAMILY SSF47616 84 198 4.87E-26 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS05210 038e2fa2d7285bfc1241388c070fdcb8 202 PANTHER PTHR11260:SF154 1 198 2.0E-56 T 23-04-2016 RD1_RS05210 038e2fa2d7285bfc1241388c070fdcb8 202 PANTHER PTHR11260 1 198 2.0E-56 T 23-04-2016 RD1_RS05210 038e2fa2d7285bfc1241388c070fdcb8 202 Gene3D G3DSA:3.40.30.10 1 89 1.6E-24 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS05210 038e2fa2d7285bfc1241388c070fdcb8 202 Pfam PF00043 Glutathione S-transferase, C-terminal domain 101 190 3.6E-15 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal RD1_RS05210 038e2fa2d7285bfc1241388c070fdcb8 202 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 74 9.0E-7 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RD1_RS05210 038e2fa2d7285bfc1241388c070fdcb8 202 SUPERFAMILY SSF52833 1 77 6.68E-15 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS05210 038e2fa2d7285bfc1241388c070fdcb8 202 Gene3D G3DSA:1.20.1050.10 90 189 3.4E-35 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS11650 5fa9605e29dea6330d4b061a41509d81 195 Gene3D G3DSA:3.90.1520.10 1 164 1.9E-19 T 23-04-2016 RD1_RS11650 5fa9605e29dea6330d4b061a41509d81 195 Pfam PF07700 Haem-NO-binding 2 154 9.2E-25 T 23-04-2016 IPR011644 Heme-NO binding GO:0020037 KEGG: 00230+4.6.1.2 RD1_RS11650 5fa9605e29dea6330d4b061a41509d81 195 SUPERFAMILY SSF111126 1 175 1.52E-24 T 23-04-2016 IPR024096 NO signalling/Golgi transport ligand-binding domain RD1_RS06815 6a39f73198c408abd556a0282e907ce8 374 SUPERFAMILY SSF55909 4 367 6.54E-104 T 23-04-2016 RD1_RS06815 6a39f73198c408abd556a0282e907ce8 374 PANTHER PTHR10488 1 367 1.8E-123 T 23-04-2016 IPR033195 Glycine/inosamine-phosphate amidinotransferase GO:0015067 RD1_RS06815 6a39f73198c408abd556a0282e907ce8 374 Gene3D G3DSA:3.75.10.10 6 366 7.5E-135 T 23-04-2016 RD1_RS06815 6a39f73198c408abd556a0282e907ce8 374 Pfam PF02274 Amidinotransferase 215 358 8.0E-7 T 23-04-2016 RD1_RS04625 6c60ad853a1042f65c2a96f8a615b5fa 288 PANTHER PTHR11825 6 281 1.1E-93 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS04625 6c60ad853a1042f65c2a96f8a615b5fa 288 Gene3D G3DSA:3.30.470.10 6 121 1.6E-32 T 23-04-2016 RD1_RS04625 6c60ad853a1042f65c2a96f8a615b5fa 288 SUPERFAMILY SSF56752 6 281 5.23E-77 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS04625 6c60ad853a1042f65c2a96f8a615b5fa 288 ProSitePatterns PS00770 Aminotransferases class-IV signature. 184 213 - T 23-04-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS04625 6c60ad853a1042f65c2a96f8a615b5fa 288 Pfam PF01063 Amino-transferase class IV 32 258 4.3E-43 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS04625 6c60ad853a1042f65c2a96f8a615b5fa 288 PANTHER PTHR11825:SF38 6 281 1.1E-93 T 23-04-2016 RD1_RS04625 6c60ad853a1042f65c2a96f8a615b5fa 288 Gene3D G3DSA:3.20.10.10 130 281 1.7E-46 T 23-04-2016 RD1_RS09555 065d495aac98d28bfcc7c91ac7fff645 397 Gene3D G3DSA:3.30.9.10 232 324 8.3E-13 T 23-04-2016 RD1_RS09555 065d495aac98d28bfcc7c91ac7fff645 397 Gene3D G3DSA:3.30.9.10 99 152 8.3E-13 T 23-04-2016 RD1_RS09555 065d495aac98d28bfcc7c91ac7fff645 397 Gene3D G3DSA:3.50.50.60 153 231 4.0E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS09555 065d495aac98d28bfcc7c91ac7fff645 397 Gene3D G3DSA:3.50.50.60 5 88 4.0E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS09555 065d495aac98d28bfcc7c91ac7fff645 397 Gene3D G3DSA:3.50.50.60 327 386 4.0E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS09555 065d495aac98d28bfcc7c91ac7fff645 397 SUPERFAMILY SSF51905 8 232 9.93E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS09555 065d495aac98d28bfcc7c91ac7fff645 397 SUPERFAMILY SSF51905 327 388 9.93E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS09555 065d495aac98d28bfcc7c91ac7fff645 397 PANTHER PTHR13847 7 397 2.8E-86 T 23-04-2016 RD1_RS09555 065d495aac98d28bfcc7c91ac7fff645 397 PANTHER PTHR13847:SF44 7 397 2.8E-86 T 23-04-2016 RD1_RS09555 065d495aac98d28bfcc7c91ac7fff645 397 Pfam PF01266 FAD dependent oxidoreductase 9 366 1.4E-42 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS14865 77cefb459a6efe8bde82ee54f346b4ae 497 Pfam PF03796 DnaB-like helicase C terminal domain 198 484 8.1E-100 T 23-04-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 RD1_RS14865 77cefb459a6efe8bde82ee54f346b4ae 497 PANTHER PTHR30153 4 428 2.6E-155 T 23-04-2016 RD1_RS14865 77cefb459a6efe8bde82ee54f346b4ae 497 PANTHER PTHR30153 446 494 2.6E-155 T 23-04-2016 RD1_RS14865 77cefb459a6efe8bde82ee54f346b4ae 497 Gene3D G3DSA:1.10.860.10 20 121 4.4E-27 T 23-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RD1_RS14865 77cefb459a6efe8bde82ee54f346b4ae 497 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 20 485 6.7E-153 T 23-04-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 RD1_RS14865 77cefb459a6efe8bde82ee54f346b4ae 497 Gene3D G3DSA:3.40.50.300 187 485 3.6E-92 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14865 77cefb459a6efe8bde82ee54f346b4ae 497 SUPERFAMILY SSF48024 18 129 1.31E-31 T 23-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RD1_RS14865 77cefb459a6efe8bde82ee54f346b4ae 497 Pfam PF00772 DnaB-like helicase N terminal domain 20 121 2.1E-26 T 23-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RD1_RS14865 77cefb459a6efe8bde82ee54f346b4ae 497 SUPERFAMILY SSF52540 451 477 7.16E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS14865 77cefb459a6efe8bde82ee54f346b4ae 497 SUPERFAMILY SSF52540 196 424 7.16E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS20480 e758dcd6a5abbca3b4e4a231d5e93a3d 816 PANTHER PTHR32089 532 800 1.3E-69 T 23-04-2016 RD1_RS20480 e758dcd6a5abbca3b4e4a231d5e93a3d 816 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 603 796 1.7E-45 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RD1_RS20480 e758dcd6a5abbca3b4e4a231d5e93a3d 816 SUPERFAMILY SSF58104 517 798 4.05E-58 T 23-04-2016 RD1_RS20480 e758dcd6a5abbca3b4e4a231d5e93a3d 816 Gene3D G3DSA:1.10.287.950 565 768 1.1E-47 T 23-04-2016 RD1_RS20480 e758dcd6a5abbca3b4e4a231d5e93a3d 816 SMART SM00283 550 797 5.2E-62 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RD1_RS20480 e758dcd6a5abbca3b4e4a231d5e93a3d 816 PANTHER PTHR32089:SF63 532 800 1.3E-69 T 23-04-2016 RD1_RS05095 efaaa69e1cb991d44a0332d490abd984 219 Pfam PF10067 Predicted membrane protein (DUF2306) 60 213 7.7E-15 T 23-04-2016 IPR018750 Protein of unknown function DUF2306, membrane RD1_RS17665 645e31d2cf9763659906c66329e0397a 366 Gene3D G3DSA:3.20.20.120 112 362 5.7E-60 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS17665 645e31d2cf9763659906c66329e0397a 366 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 5 106 9.7E-15 T 23-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RD1_RS17665 645e31d2cf9763659906c66329e0397a 366 SUPERFAMILY SSF51604 94 362 1.44E-65 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS17665 645e31d2cf9763659906c66329e0397a 366 Gene3D G3DSA:3.30.390.10 9 111 7.2E-29 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RD1_RS17665 645e31d2cf9763659906c66329e0397a 366 Pfam PF13378 Enolase C-terminal domain-like 129 354 9.3E-49 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RD1_RS17665 645e31d2cf9763659906c66329e0397a 366 SMART SM00922 125 230 5.1E-18 T 23-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RD1_RS17665 645e31d2cf9763659906c66329e0397a 366 PANTHER PTHR13794 162 366 1.6E-61 T 23-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 RD1_RS17665 645e31d2cf9763659906c66329e0397a 366 PANTHER PTHR13794 16 146 1.6E-61 T 23-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 RD1_RS17665 645e31d2cf9763659906c66329e0397a 366 SUPERFAMILY SSF54826 1 108 1.93E-23 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RD1_RS01130 93c3efa3d1e9cdf8601ed3b1afe18942 245 PANTHER PTHR34698 1 236 1.4E-33 T 23-04-2016 RD1_RS01130 93c3efa3d1e9cdf8601ed3b1afe18942 245 PANTHER PTHR34698:SF2 1 236 1.4E-33 T 23-04-2016 RD1_RS01130 93c3efa3d1e9cdf8601ed3b1afe18942 245 SUPERFAMILY SSF160467 7 99 7.19E-11 T 23-04-2016 RD1_RS01130 93c3efa3d1e9cdf8601ed3b1afe18942 245 Gene3D G3DSA:3.30.1360.40 6 83 2.9E-8 T 23-04-2016 IPR024946 Arginine repressor C-terminal-like domain RD1_RS01130 93c3efa3d1e9cdf8601ed3b1afe18942 245 SUPERFAMILY SSF50891 95 224 5.31E-31 T 23-04-2016 IPR029000 Cyclophilin-like domain RD1_RS01130 93c3efa3d1e9cdf8601ed3b1afe18942 245 Pfam PF02682 Allophanate hydrolase subunit 1 6 208 4.2E-43 T 23-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D RD1_RS01130 93c3efa3d1e9cdf8601ed3b1afe18942 245 Gene3D G3DSA:2.40.100.10 95 229 3.5E-30 T 23-04-2016 IPR029000 Cyclophilin-like domain RD1_RS01130 93c3efa3d1e9cdf8601ed3b1afe18942 245 SMART SM00796 5 209 3.9E-40 T 23-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D RD1_RS04110 4fdfa1a316818318573e5d0dd54bb0d4 270 TIGRFAM TIGR04557 fuse_rel_SoxYZ: quinoprotein dehydrogenase-associated SoxYZ-like carrier 25 259 1.8E-47 T 23-04-2016 IPR030831 Quinoprotein dehydrogenase-associated SoxYZ-like carrier RD1_RS04110 4fdfa1a316818318573e5d0dd54bb0d4 270 Pfam PF08770 Sulphur oxidation protein SoxZ 185 261 4.5E-13 T 23-04-2016 IPR014880 Sulphur oxidation protein SoxZ RD1_RS04110 4fdfa1a316818318573e5d0dd54bb0d4 270 Gene3D G3DSA:2.60.40.10 183 265 6.5E-21 T 23-04-2016 IPR013783 Immunoglobulin-like fold RD1_RS04110 4fdfa1a316818318573e5d0dd54bb0d4 270 Pfam PF13501 Sulfur oxidation protein SoxY 30 140 6.5E-20 T 23-04-2016 IPR032711 Ig-like SoxY domain RD1_RS04110 4fdfa1a316818318573e5d0dd54bb0d4 270 SUPERFAMILY SSF81296 182 262 2.8E-16 T 23-04-2016 IPR014756 Immunoglobulin E-set RD1_RS12275 78a5896181c1c6ce32414e37c5dfe3f9 279 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 82 140 5.0E-10 T 23-04-2016 IPR018637 Domain of unknown function DUF2059 RD1_RS17165 73bf6916d3f4cd89e7a975a2383ed5da 367 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 162 364 4.0E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17165 73bf6916d3f4cd89e7a975a2383ed5da 367 PANTHER PTHR30193 87 364 2.2E-64 T 23-04-2016 RD1_RS17165 73bf6916d3f4cd89e7a975a2383ed5da 367 Gene3D G3DSA:1.10.3720.10 134 361 1.5E-48 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17165 73bf6916d3f4cd89e7a975a2383ed5da 367 SUPERFAMILY SSF160964 57 116 1.18E-5 T 23-04-2016 RD1_RS17165 73bf6916d3f4cd89e7a975a2383ed5da 367 Gene3D G3DSA:1.20.58.370 64 115 4.0E-5 T 23-04-2016 RD1_RS17165 73bf6916d3f4cd89e7a975a2383ed5da 367 PANTHER PTHR30193:SF6 87 364 2.2E-64 T 23-04-2016 RD1_RS17165 73bf6916d3f4cd89e7a975a2383ed5da 367 SUPERFAMILY SSF161098 128 352 1.31E-45 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS08260 d5b3309428018bee1b6c6a647b920c69 181 Pfam PF04268 Sarcosine oxidase, gamma subunit family 43 173 2.7E-15 T 23-04-2016 IPR007375 Sarcosine oxidase, gamma subunit KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS08260 d5b3309428018bee1b6c6a647b920c69 181 SUPERFAMILY SSF103025 94 176 4.71E-8 T 23-04-2016 RD1_RS12370 f0c0a38cf534f1a102ec3df43aa043a5 406 Gene3D G3DSA:3.40.640.10 35 282 1.2E-79 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS12370 f0c0a38cf534f1a102ec3df43aa043a5 406 Pfam PF00266 Aminotransferase class-V 24 394 3.8E-132 T 23-04-2016 IPR000192 Aminotransferase class V domain RD1_RS12370 f0c0a38cf534f1a102ec3df43aa043a5 406 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 6 405 4.3E-161 T 23-04-2016 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RD1_RS12370 f0c0a38cf534f1a102ec3df43aa043a5 406 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 216 235 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RD1_RS12370 f0c0a38cf534f1a102ec3df43aa043a5 406 PIRSF PIRSF005572 21 404 1.4E-50 T 23-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RD1_RS12370 f0c0a38cf534f1a102ec3df43aa043a5 406 PANTHER PTHR11601 5 399 8.3E-167 T 23-04-2016 RD1_RS12370 f0c0a38cf534f1a102ec3df43aa043a5 406 PANTHER PTHR11601:SF17 5 399 8.3E-167 T 23-04-2016 RD1_RS12370 f0c0a38cf534f1a102ec3df43aa043a5 406 Gene3D G3DSA:3.90.1150.10 283 399 4.2E-25 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS12370 f0c0a38cf534f1a102ec3df43aa043a5 406 SUPERFAMILY SSF53383 2 399 1.1E-119 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS05950 fc5ae365ac8576520176293445acd50e 439 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 23 436 2.2E-91 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS05950 fc5ae365ac8576520176293445acd50e 439 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 432 9.2E-91 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS05950 fc5ae365ac8576520176293445acd50e 439 PANTHER PTHR33362 11 436 4.0E-134 T 23-04-2016 RD1_RS05950 fc5ae365ac8576520176293445acd50e 439 PIRSF PIRSF006066 6 439 8.9E-86 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS05950 fc5ae365ac8576520176293445acd50e 439 PANTHER PTHR33362:SF5 11 436 4.0E-134 T 23-04-2016 RD1_RS07245 b05399e20cd8138fcce64e934f6a078a 383 SUPERFAMILY SSF51004 27 381 2.88E-72 T 23-04-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain RD1_RS07245 b05399e20cd8138fcce64e934f6a078a 383 Gene3D G3DSA:2.130.10.10 264 378 3.7E-35 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RD1_RS07245 b05399e20cd8138fcce64e934f6a078a 383 Gene3D G3DSA:2.130.10.10 32 232 3.7E-35 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RD1_RS07245 b05399e20cd8138fcce64e934f6a078a 383 PANTHER PTHR13833 4 219 1.5E-12 T 23-04-2016 RD1_RS07245 b05399e20cd8138fcce64e934f6a078a 383 Pfam PF02239 Cytochrome D1 heme domain 26 377 4.2E-95 T 23-04-2016 RD1_RS12385 1ab0b2f78854c52018dccf60a1bd3bca 426 PANTHER PTHR30508:SF0 25 422 5.4E-86 T 23-04-2016 RD1_RS12385 1ab0b2f78854c52018dccf60a1bd3bca 426 PANTHER PTHR30508 25 422 5.4E-86 T 23-04-2016 RD1_RS12385 1ab0b2f78854c52018dccf60a1bd3bca 426 SUPERFAMILY SSF101960 17 423 1.44E-94 T 23-04-2016 RD1_RS12385 1ab0b2f78854c52018dccf60a1bd3bca 426 Pfam PF01458 Uncharacterized protein family (UPF0051) 179 396 1.1E-58 T 23-04-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 RD1_RS13160 d8a243667cda3d59646a688b6b79e41f 400 Pfam PF03441 FAD binding domain of DNA photolyase 76 221 1.0E-24 T 23-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain RD1_RS13160 d8a243667cda3d59646a688b6b79e41f 400 Gene3D G3DSA:1.25.40.80 4 81 7.4E-11 T 23-04-2016 RD1_RS13160 d8a243667cda3d59646a688b6b79e41f 400 PANTHER PTHR11455:SF18 1 195 5.2E-24 T 23-04-2016 RD1_RS13160 d8a243667cda3d59646a688b6b79e41f 400 Gene3D G3DSA:1.10.579.10 82 236 2.1E-34 T 23-04-2016 RD1_RS13160 d8a243667cda3d59646a688b6b79e41f 400 SUPERFAMILY SSF48173 5 240 6.15E-56 T 23-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain RD1_RS13160 d8a243667cda3d59646a688b6b79e41f 400 PANTHER PTHR11455 1 195 5.2E-24 T 23-04-2016 RD1_RS03675 a588a9b8193c85df0ea64f94975d0b1f 650 Gene3D G3DSA:3.40.50.300 1 169 2.2E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03675 a588a9b8193c85df0ea64f94975d0b1f 650 Gene3D G3DSA:3.40.50.300 211 212 2.2E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03675 a588a9b8193c85df0ea64f94975d0b1f 650 Gene3D G3DSA:3.40.50.300 385 454 2.2E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03675 a588a9b8193c85df0ea64f94975d0b1f 650 Gene3D G3DSA:3.40.50.300 521 610 2.2E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03675 a588a9b8193c85df0ea64f94975d0b1f 650 SUPERFAMILY SSF52540 1 185 2.36E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03675 a588a9b8193c85df0ea64f94975d0b1f 650 SUPERFAMILY SSF52540 407 602 2.36E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS03675 a588a9b8193c85df0ea64f94975d0b1f 650 Pfam PF13476 AAA domain 6 282 2.8E-15 T 23-04-2016 RD1_RS03675 a588a9b8193c85df0ea64f94975d0b1f 650 TIGRFAM TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD 1 621 2.0E-133 T 23-04-2016 IPR017599 DNA sulphur modification protein DndD RD1_RS17415 b6c9959cc2ae9132f5b76436be2a3741 213 PIRSF PIRSF009467 2 213 3.6E-56 T 23-04-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 RD1_RS17415 b6c9959cc2ae9132f5b76436be2a3741 213 Pfam PF01730 UreF 38 171 1.5E-31 T 23-04-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 RD1_RS17415 b6c9959cc2ae9132f5b76436be2a3741 213 Hamap MF_01385 Urease accessory protein UreF [ureF]. 5 213 30.198 T 23-04-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 RD1_RS17415 b6c9959cc2ae9132f5b76436be2a3741 213 PANTHER PTHR33620 1 213 1.3E-31 T 23-04-2016 RD1_RS07945 02827fb447d8163b9773efa5a58e5cbe 203 Pfam PF01794 Ferric reductase like transmembrane component 46 158 2.1E-10 T 23-04-2016 IPR013130 Ferric reductase transmembrane component-like domain RD1_RS08465 5ab981ac938ac4004aff78aa917daf6e 432 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 11 428 1.3E-174 T 23-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RD1_RS08465 5ab981ac938ac4004aff78aa917daf6e 432 PIRSF PIRSF001434 2 431 6.3E-122 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RD1_RS08465 5ab981ac938ac4004aff78aa917daf6e 432 SUPERFAMILY SSF53383 9 428 2.39E-120 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS08465 5ab981ac938ac4004aff78aa917daf6e 432 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 12 427 1.8E-126 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RD1_RS08465 5ab981ac938ac4004aff78aa917daf6e 432 Gene3D G3DSA:3.40.640.10 10 290 4.7E-107 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS08465 5ab981ac938ac4004aff78aa917daf6e 432 PANTHER PTHR11808:SF12 271 432 3.7E-205 T 23-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RD1_RS08465 5ab981ac938ac4004aff78aa917daf6e 432 PANTHER PTHR11808:SF12 8 241 3.7E-205 T 23-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RD1_RS08465 5ab981ac938ac4004aff78aa917daf6e 432 Gene3D G3DSA:3.90.1150.10 294 430 3.0E-49 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS08465 5ab981ac938ac4004aff78aa917daf6e 432 PANTHER PTHR11808 271 432 3.7E-205 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RD1_RS08465 5ab981ac938ac4004aff78aa917daf6e 432 PANTHER PTHR11808 8 241 3.7E-205 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RD1_RS12445 df0864ef29b9d6b990a8290618b2be5c 95 SUPERFAMILY SSF54909 1 92 1.29E-26 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS12445 df0864ef29b9d6b990a8290618b2be5c 95 Pfam PF07045 Domain of unknown function (DUF1330) 3 93 1.0E-32 T 23-04-2016 IPR010753 Domain of unknown function DUF1330 RD1_RS12445 df0864ef29b9d6b990a8290618b2be5c 95 PANTHER PTHR41521 1 92 3.4E-17 T 23-04-2016 RD1_RS12445 df0864ef29b9d6b990a8290618b2be5c 95 Gene3D G3DSA:3.30.70.900 1 92 6.0E-31 T 23-04-2016 RD1_RS13430 a44a95ecb409523f0324692df9df79d2 222 Pfam PF07385 Protein of unknown function (DUF1498) 1 221 2.6E-93 T 23-04-2016 IPR010864 Protein of unknown function DUF1498 KEGG: 00040+5.3.1.15 RD1_RS06510 8693b477f6dd1f951cdd75795d1d3e12 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.2E-40 T 23-04-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 RD1_RS06510 8693b477f6dd1f951cdd75795d1d3e12 92 Gene3D G3DSA:3.30.860.10 1 91 5.6E-40 T 23-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 RD1_RS06510 8693b477f6dd1f951cdd75795d1d3e12 92 PIRSF PIRSF002144 1 92 1.1E-32 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RD1_RS06510 8693b477f6dd1f951cdd75795d1d3e12 92 Pfam PF00203 Ribosomal protein S19 3 83 1.1E-34 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RD1_RS06510 8693b477f6dd1f951cdd75795d1d3e12 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 23-04-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 RD1_RS06510 8693b477f6dd1f951cdd75795d1d3e12 92 PANTHER PTHR11880 1 92 1.3E-46 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RD1_RS06510 8693b477f6dd1f951cdd75795d1d3e12 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 23.7 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RD1_RS06510 8693b477f6dd1f951cdd75795d1d3e12 92 SUPERFAMILY SSF54570 2 84 3.79E-33 T 23-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 RD1_RS06510 8693b477f6dd1f951cdd75795d1d3e12 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 7.3E-20 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RD1_RS06510 8693b477f6dd1f951cdd75795d1d3e12 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 7.3E-20 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RD1_RS06510 8693b477f6dd1f951cdd75795d1d3e12 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 7.3E-20 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RD1_RS01785 214151edd171e314098eb8b583982563 285 SUPERFAMILY SSF109998 32 163 8.24E-11 T 23-04-2016 IPR027304 Trigger factor/SurA domain RD1_RS01785 214151edd171e314098eb8b583982563 285 SUPERFAMILY SSF54534 116 225 2.16E-29 T 23-04-2016 RD1_RS01785 214151edd171e314098eb8b583982563 285 PANTHER PTHR10657 8 23 9.3E-32 T 23-04-2016 RD1_RS01785 214151edd171e314098eb8b583982563 285 PANTHER PTHR10657 111 250 9.3E-32 T 23-04-2016 RD1_RS01785 214151edd171e314098eb8b583982563 285 Pfam PF13616 PPIC-type PPIASE domain 136 225 4.3E-20 T 23-04-2016 RD1_RS01785 214151edd171e314098eb8b583982563 285 Gene3D G3DSA:3.10.50.40 135 248 3.2E-38 T 23-04-2016 RD1_RS01785 214151edd171e314098eb8b583982563 285 PANTHER PTHR10657:SF11 8 23 9.3E-32 T 23-04-2016 RD1_RS01785 214151edd171e314098eb8b583982563 285 PANTHER PTHR10657:SF11 111 250 9.3E-32 T 23-04-2016 RD1_RS19515 fa44027de37ec37f45df2fc2ae8a99e4 443 Gene3D G3DSA:3.30.70.1400 319 406 1.6E-22 T 23-04-2016 RD1_RS19515 fa44027de37ec37f45df2fc2ae8a99e4 443 SUPERFAMILY SSF103025 258 443 4.08E-52 T 23-04-2016 RD1_RS19515 fa44027de37ec37f45df2fc2ae8a99e4 443 Pfam PF01571 Aminomethyltransferase folate-binding domain 266 438 1.1E-41 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RD1_RS00745 1ce0932f6f88c0bfdf58fb9b74eb7b3f 416 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 137 2.7E-25 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RD1_RS00745 1ce0932f6f88c0bfdf58fb9b74eb7b3f 416 Gene3D G3DSA:1.20.1330.10 53 136 6.0E-11 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RD1_RS00745 1ce0932f6f88c0bfdf58fb9b74eb7b3f 416 Gene3D G3DSA:1.20.1330.10 318 362 6.0E-11 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RD1_RS00745 1ce0932f6f88c0bfdf58fb9b74eb7b3f 416 Gene3D G3DSA:1.20.1330.10 171 172 6.0E-11 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RD1_RS00745 1ce0932f6f88c0bfdf58fb9b74eb7b3f 416 SUPERFAMILY SSF64518 1 416 1.1E-67 T 23-04-2016 RD1_RS00745 1ce0932f6f88c0bfdf58fb9b74eb7b3f 416 PRINTS PR00207 Flagellin signature 36 53 9.3E-6 T 23-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RD1_RS00745 1ce0932f6f88c0bfdf58fb9b74eb7b3f 416 PRINTS PR00207 Flagellin signature 107 130 9.3E-6 T 23-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RD1_RS00745 1ce0932f6f88c0bfdf58fb9b74eb7b3f 416 Pfam PF00700 Bacterial flagellin C-terminal helical region 338 415 1.5E-14 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RD1_RS13885 06bcd4b3eedfd1ba7e8122d6f9e21caf 61 Pfam PF09550 Phage tail assembly chaperone protein, TAC 5 60 1.1E-23 T 23-04-2016 IPR019056 Phage tail assembly chaperone protein, TAC6 RD1_RS13885 06bcd4b3eedfd1ba7e8122d6f9e21caf 61 TIGRFAM TIGR02216 phage_TIGR02216: phage conserved hypothetical protein 5 60 3.0E-17 T 23-04-2016 IPR011739 Gene transfer agent, rcc01693 RD1_RS06095 bab372b8e3f18197ef1b330fbc3e78be 110 Pfam PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter 39 89 5.7E-13 T 23-04-2016 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter RD1_RS06095 bab372b8e3f18197ef1b330fbc3e78be 110 PIRSF PIRSF032126 1 110 2.2E-30 T 23-04-2016 IPR016989 ATP synthase protein I, alphaproteobacterial RD1_RS04170 aa25003c44ac219f8175de9015f1b7b7 322 Pfam PF09375 Imelysin 26 299 2.3E-36 T 23-04-2016 RD1_RS03020 4dd2e9a4fa0be55f66f9b3db04f31ce8 161 ProSitePatterns PS00855 Signal peptidases II signature. 98 110 - T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RD1_RS03020 4dd2e9a4fa0be55f66f9b3db04f31ce8 161 PANTHER PTHR33695:SF1 1 161 2.7E-31 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RD1_RS03020 4dd2e9a4fa0be55f66f9b3db04f31ce8 161 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 48 56 4.4E-12 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RD1_RS03020 4dd2e9a4fa0be55f66f9b3db04f31ce8 161 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 132 148 4.4E-12 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RD1_RS03020 4dd2e9a4fa0be55f66f9b3db04f31ce8 161 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 95 110 4.4E-12 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RD1_RS03020 4dd2e9a4fa0be55f66f9b3db04f31ce8 161 Pfam PF01252 Signal peptidase (SPase) II 8 148 4.9E-29 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RD1_RS03020 4dd2e9a4fa0be55f66f9b3db04f31ce8 161 PANTHER PTHR33695 1 161 2.7E-31 T 23-04-2016 RD1_RS03020 4dd2e9a4fa0be55f66f9b3db04f31ce8 161 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 1 157 12.779 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RD1_RS03020 4dd2e9a4fa0be55f66f9b3db04f31ce8 161 TIGRFAM TIGR00077 lspA: signal peptidase II 4 148 7.2E-27 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RD1_RS02750 4195e8892b04c7affc3de9c1ca3c054f 182 PANTHER PTHR11592:SF40 27 179 5.7E-47 T 23-04-2016 RD1_RS02750 4195e8892b04c7affc3de9c1ca3c054f 182 PIRSF PIRSF000303 1 180 2.5E-45 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RD1_RS02750 4195e8892b04c7affc3de9c1ca3c054f 182 Pfam PF00255 Glutathione peroxidase 29 128 5.7E-22 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RD1_RS02750 4195e8892b04c7affc3de9c1ca3c054f 182 SUPERFAMILY SSF52833 25 176 3.69E-43 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS02750 4195e8892b04c7affc3de9c1ca3c054f 182 ProSitePatterns PS00460 Glutathione peroxidases active site. 45 60 - T 23-04-2016 IPR029759 Glutathione peroxidase active site RD1_RS02750 4195e8892b04c7affc3de9c1ca3c054f 182 PRINTS PR01011 Glutathione peroxidase family signature 138 147 2.54185E-7 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RD1_RS02750 4195e8892b04c7affc3de9c1ca3c054f 182 PRINTS PR01011 Glutathione peroxidase family signature 78 94 2.54185E-7 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RD1_RS02750 4195e8892b04c7affc3de9c1ca3c054f 182 PRINTS PR01011 Glutathione peroxidase family signature 43 60 2.54185E-7 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RD1_RS02750 4195e8892b04c7affc3de9c1ca3c054f 182 Gene3D G3DSA:3.40.30.10 27 177 3.9E-43 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS02750 4195e8892b04c7affc3de9c1ca3c054f 182 PANTHER PTHR11592 27 179 5.7E-47 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RD1_RS06575 9422d255c063de6f0ea0d36260d481a1 103 Gene3D G3DSA:2.30.30.30 4 90 3.3E-21 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 RD1_RS06575 9422d255c063de6f0ea0d36260d481a1 103 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 101 1.1E-29 T 23-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06575 9422d255c063de6f0ea0d36260d481a1 103 SUPERFAMILY SSF50104 4 100 5.64E-28 T 23-04-2016 IPR008991 Translation protein SH3-like domain RD1_RS06575 9422d255c063de6f0ea0d36260d481a1 103 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 95 16.369 T 23-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06575 9422d255c063de6f0ea0d36260d481a1 103 Pfam PF00467 KOW motif 7 38 1.7E-7 T 23-04-2016 IPR005824 KOW RD1_RS06575 9422d255c063de6f0ea0d36260d481a1 103 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 23-04-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06575 9422d255c063de6f0ea0d36260d481a1 103 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 41 101 1.4E-16 T 23-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06575 9422d255c063de6f0ea0d36260d481a1 103 SMART SM00739 4 31 2.9E-7 T 23-04-2016 IPR005824 KOW RD1_RS06575 9422d255c063de6f0ea0d36260d481a1 103 PANTHER PTHR12903 4 102 3.6E-29 T 23-04-2016 RD1_RS12195 96a7a750497341c468c751cde3ab5cf4 330 SUPERFAMILY SSF53098 175 324 3.64E-20 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS12195 96a7a750497341c468c751cde3ab5cf4 330 Pfam PF13936 Helix-turn-helix domain 6 45 9.1E-13 T 23-04-2016 IPR025246 Transposase IS30-like HTH domain RD1_RS12195 96a7a750497341c468c751cde3ab5cf4 330 Gene3D G3DSA:3.30.420.10 173 318 1.3E-7 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RD1_RS12195 96a7a750497341c468c751cde3ab5cf4 330 Pfam PF00665 Integrase core domain 177 283 7.2E-9 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RD1_RS12195 96a7a750497341c468c751cde3ab5cf4 330 PANTHER PTHR10948 1 327 3.0E-63 T 23-04-2016 RD1_RS08060 061179e00528bd450c579056ac3d278d 224 Gene3D G3DSA:3.90.550.10 5 172 8.6E-17 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS08060 061179e00528bd450c579056ac3d278d 224 TIGRFAM TIGR04283 glyco_like_mftF: transferase 2, rSAM/selenodomain-associated 5 222 6.7E-58 T 23-04-2016 IPR026461 Transferase 2, rSAM/selenodomain-associated RD1_RS08060 061179e00528bd450c579056ac3d278d 224 Pfam PF00535 Glycosyl transferase family 2 6 107 6.1E-14 T 23-04-2016 IPR001173 Glycosyltransferase 2-like RD1_RS08060 061179e00528bd450c579056ac3d278d 224 SUPERFAMILY SSF53448 4 207 2.66E-26 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS08060 061179e00528bd450c579056ac3d278d 224 PANTHER PTHR10859 5 214 3.2E-17 T 23-04-2016 RD1_RS05720 80ac41660367eb08210f278dc9717c48 162 PANTHER PTHR36930 1 154 2.9E-29 T 23-04-2016 RD1_RS05720 80ac41660367eb08210f278dc9717c48 162 Gene3D G3DSA:2.40.33.20 13 156 3.2E-37 T 23-04-2016 IPR015808 Molybdenum cofactor sulfurase, C-terminal-like RD1_RS05720 80ac41660367eb08210f278dc9717c48 162 SUPERFAMILY SSF50800 12 154 7.32E-37 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain RD1_RS05720 80ac41660367eb08210f278dc9717c48 162 Pfam PF03473 MOSC domain 48 153 3.5E-8 T 23-04-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 RD1_RS05720 80ac41660367eb08210f278dc9717c48 162 PANTHER PTHR36930:SF1 1 154 2.9E-29 T 23-04-2016 RD1_RS13445 c15e0a9d03956f2ef8e1a7b43fb46326 322 SUPERFAMILY SSF53850 123 286 1.57E-5 T 23-04-2016 RD1_RS13445 c15e0a9d03956f2ef8e1a7b43fb46326 322 PANTHER PTHR30349:SF16 7 319 5.2E-48 T 23-04-2016 RD1_RS13445 c15e0a9d03956f2ef8e1a7b43fb46326 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 55 313 2.0E-47 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RD1_RS13445 c15e0a9d03956f2ef8e1a7b43fb46326 322 PANTHER PTHR30349 7 319 5.2E-48 T 23-04-2016 RD1_RS13445 c15e0a9d03956f2ef8e1a7b43fb46326 322 PIRSF PIRSF017082 1 322 2.3E-74 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RD1_RS16700 0b2f8c05d0c75f6e418a2fb0a6ba6af6 325 SMART SM01007 10 196 6.1E-30 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS16700 0b2f8c05d0c75f6e418a2fb0a6ba6af6 325 Gene3D G3DSA:3.40.225.10 16 197 3.9E-24 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS16700 0b2f8c05d0c75f6e418a2fb0a6ba6af6 325 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 194 3.4E-21 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS16700 0b2f8c05d0c75f6e418a2fb0a6ba6af6 325 SUPERFAMILY SSF53639 15 192 1.69E-21 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS07640 f7734aedd3e43a3086a004f11e5df329 131 Pfam PF04940 Sensors of blue-light using FAD 3 93 3.6E-25 T 23-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RD1_RS07640 f7734aedd3e43a3086a004f11e5df329 131 SUPERFAMILY SSF54975 1 111 1.77E-32 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RD1_RS07640 f7734aedd3e43a3086a004f11e5df329 131 SMART SM01034 3 94 1.2E-37 T 23-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RD1_RS03590 6b244dc7e91f3fd9e0784db8bde16937 559 Gene3D G3DSA:3.50.50.60 150 263 1.4E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03590 6b244dc7e91f3fd9e0784db8bde16937 559 Gene3D G3DSA:3.50.50.60 406 475 1.4E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03590 6b244dc7e91f3fd9e0784db8bde16937 559 PANTHER PTHR10632 149 544 9.0E-177 T 23-04-2016 RD1_RS03590 6b244dc7e91f3fd9e0784db8bde16937 559 PANTHER PTHR10632:SF2 149 544 9.0E-177 T 23-04-2016 RD1_RS03590 6b244dc7e91f3fd9e0784db8bde16937 559 TIGRFAM TIGR01244 TIGR01244: TIGR01244 family protein 2 133 1.4E-40 T 23-04-2016 IPR005939 Beta-lactamase hydrolase-like GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- RD1_RS03590 6b244dc7e91f3fd9e0784db8bde16937 559 SUPERFAMILY SSF51905 345 474 1.71E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03590 6b244dc7e91f3fd9e0784db8bde16937 559 SUPERFAMILY SSF51905 149 248 1.71E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03590 6b244dc7e91f3fd9e0784db8bde16937 559 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 150 270 4.4E-8 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS03590 6b244dc7e91f3fd9e0784db8bde16937 559 Gene3D G3DSA:3.90.190.10 1 137 6.2E-46 T 23-04-2016 IPR029021 Protein-tyrosine phosphatase-like RD1_RS03590 6b244dc7e91f3fd9e0784db8bde16937 559 Pfam PF04273 Putative phosphatase (DUF442) 3 109 8.0E-35 T 23-04-2016 IPR005939 Beta-lactamase hydrolase-like GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- RD1_RS11885 4d39ac6eab43feba93d578dcedf08bb8 405 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 142 398 2.4E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11885 4d39ac6eab43feba93d578dcedf08bb8 405 PANTHER PTHR30465 29 191 2.2E-53 T 23-04-2016 RD1_RS11885 4d39ac6eab43feba93d578dcedf08bb8 405 PANTHER PTHR30465 258 405 2.2E-53 T 23-04-2016 RD1_RS11885 4d39ac6eab43feba93d578dcedf08bb8 405 SUPERFAMILY SSF161098 264 389 5.63E-10 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11885 4d39ac6eab43feba93d578dcedf08bb8 405 Gene3D G3DSA:1.10.3720.10 267 399 5.1E-14 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11885 4d39ac6eab43feba93d578dcedf08bb8 405 Gene3D G3DSA:1.10.3720.10 115 188 5.1E-14 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11885 4d39ac6eab43feba93d578dcedf08bb8 405 PANTHER PTHR30465:SF10 29 191 2.2E-53 T 23-04-2016 RD1_RS11885 4d39ac6eab43feba93d578dcedf08bb8 405 PANTHER PTHR30465:SF10 258 405 2.2E-53 T 23-04-2016 RD1_RS04150 ce058ddd59c6bc74822806cfb15190b5 319 SUPERFAMILY SSF53850 28 244 2.53E-20 T 23-04-2016 RD1_RS04150 ce058ddd59c6bc74822806cfb15190b5 319 Pfam PF09084 NMT1/THI5 like 49 243 3.8E-10 T 23-04-2016 IPR015168 SsuA/THI5-like RD1_RS12525 06696472fc1fd7ec255af442ec0c7d11 492 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 22 486 3.2E-85 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RD1_RS12525 06696472fc1fd7ec255af442ec0c7d11 492 PANTHER PTHR34217 1 492 1.4E-193 T 23-04-2016 RD1_RS12525 06696472fc1fd7ec255af442ec0c7d11 492 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 438 456 3.8E-47 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RD1_RS12525 06696472fc1fd7ec255af442ec0c7d11 492 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 324 343 3.8E-47 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RD1_RS12525 06696472fc1fd7ec255af442ec0c7d11 492 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 370 387 3.8E-47 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RD1_RS12525 06696472fc1fd7ec255af442ec0c7d11 492 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 237 256 3.8E-47 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RD1_RS12525 06696472fc1fd7ec255af442ec0c7d11 492 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 144 164 3.8E-47 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RD1_RS12525 06696472fc1fd7ec255af442ec0c7d11 492 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 284 300 3.8E-47 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RD1_RS12525 06696472fc1fd7ec255af442ec0c7d11 492 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 257 276 3.8E-47 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RD1_RS12525 06696472fc1fd7ec255af442ec0c7d11 492 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 393 414 3.8E-47 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RD1_RS12525 06696472fc1fd7ec255af442ec0c7d11 492 PIRSF PIRSF006615 1 492 2.7E-159 T 23-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RD1_RS12525 06696472fc1fd7ec255af442ec0c7d11 492 SUPERFAMILY SSF55486 3 486 1.83E-114 T 23-04-2016 RD1_RS12525 06696472fc1fd7ec255af442ec0c7d11 492 PANTHER PTHR34217:SF1 1 492 1.4E-193 T 23-04-2016 RD1_RS12310 3c987dec4dc4a66b88172f0fe7e3b21b 256 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS12310 3c987dec4dc4a66b88172f0fe7e3b21b 256 Pfam PF00005 ABC transporter 26 166 4.2E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS12310 3c987dec4dc4a66b88172f0fe7e3b21b 256 Gene3D G3DSA:3.40.50.300 6 236 3.0E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12310 3c987dec4dc4a66b88172f0fe7e3b21b 256 SUPERFAMILY SSF52540 3 231 3.0E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12310 3c987dec4dc4a66b88172f0fe7e3b21b 256 SMART SM00382 28 214 1.7E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS12310 3c987dec4dc4a66b88172f0fe7e3b21b 256 PANTHER PTHR24220 5 247 3.7E-68 T 23-04-2016 RD1_RS15465 a4d55cca1a09b7757c564a4a51d1ea4f 177 SUPERFAMILY SSF89447 3 142 6.06E-38 T 23-04-2016 RD1_RS15465 a4d55cca1a09b7757c564a4a51d1ea4f 177 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 5 131 2.0E-13 T 23-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RD1_RS15465 a4d55cca1a09b7757c564a4a51d1ea4f 177 Gene3D G3DSA:2.10.260.10 93 117 8.2E-4 T 23-04-2016 RD1_RS15465 a4d55cca1a09b7757c564a4a51d1ea4f 177 PANTHER PTHR34701 5 163 2.9E-19 T 23-04-2016 RD1_RS15465 a4d55cca1a09b7757c564a4a51d1ea4f 177 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 177 38.317 T 23-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RD1_RS15465 a4d55cca1a09b7757c564a4a51d1ea4f 177 Pfam PF02381 MraZ protein, putative antitoxin-like 93 140 9.1E-9 T 23-04-2016 IPR020603 MraZ domain RD1_RS15465 a4d55cca1a09b7757c564a4a51d1ea4f 177 Pfam PF02381 MraZ protein, putative antitoxin-like 5 31 2.4E-5 T 23-04-2016 IPR020603 MraZ domain RD1_RS11130 319df86672957818e9ec1fa4a3bec8c3 315 Pfam PF01522 Polysaccharide deacetylase 70 160 1.1E-16 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RD1_RS11130 319df86672957818e9ec1fa4a3bec8c3 315 PANTHER PTHR10587 9 293 2.0E-88 T 23-04-2016 RD1_RS11130 319df86672957818e9ec1fa4a3bec8c3 315 PANTHER PTHR10587:SF72 9 293 2.0E-88 T 23-04-2016 RD1_RS11130 319df86672957818e9ec1fa4a3bec8c3 315 Gene3D G3DSA:3.20.20.370 2 294 2.9E-85 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RD1_RS11130 319df86672957818e9ec1fa4a3bec8c3 315 SUPERFAMILY SSF88713 3 294 1.5E-75 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RD1_RS18765 9544fc4fd3bc46f6a1aee8c617971957 410 PANTHER PTHR33376 29 392 9.1E-27 T 23-04-2016 RD1_RS18765 9544fc4fd3bc46f6a1aee8c617971957 410 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 82 308 1.2E-28 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS18130 6672c775dbf0ddd47cae9303ee3194ae 446 PANTHER PTHR11206 15 435 3.9E-103 T 23-04-2016 RD1_RS18130 6672c775dbf0ddd47cae9303ee3194ae 446 TIGRFAM TIGR00797 matE: MATE efflux family protein 24 417 2.7E-66 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS18130 6672c775dbf0ddd47cae9303ee3194ae 446 Pfam PF01554 MatE 249 403 4.4E-12 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS18130 6672c775dbf0ddd47cae9303ee3194ae 446 Pfam PF01554 MatE 24 184 2.5E-16 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS18130 6672c775dbf0ddd47cae9303ee3194ae 446 PANTHER PTHR11206:SF94 15 435 3.9E-103 T 23-04-2016 RD1_RS09535 6fb9b7ee194ce6949a6f853981991604 427 Pfam PF03403 Platelet-activating factor acetylhydrolase, isoform II 105 157 3.0E-10 T 23-04-2016 IPR005065 Platelet-activating factor acetylhydrolase GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 RD1_RS09535 6fb9b7ee194ce6949a6f853981991604 427 PANTHER PTHR10272 106 212 1.8E-13 T 23-04-2016 IPR005065 Platelet-activating factor acetylhydrolase GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 RD1_RS09535 6fb9b7ee194ce6949a6f853981991604 427 PANTHER PTHR10272 245 375 1.8E-13 T 23-04-2016 IPR005065 Platelet-activating factor acetylhydrolase GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 RD1_RS09535 6fb9b7ee194ce6949a6f853981991604 427 Gene3D G3DSA:3.40.50.1820 248 325 5.2E-58 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS09535 6fb9b7ee194ce6949a6f853981991604 427 Gene3D G3DSA:3.40.50.1820 28 82 5.2E-58 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS09535 6fb9b7ee194ce6949a6f853981991604 427 Gene3D G3DSA:3.40.50.1820 357 383 5.2E-58 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS09535 6fb9b7ee194ce6949a6f853981991604 427 Gene3D G3DSA:3.40.50.1820 115 215 5.2E-58 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS09535 6fb9b7ee194ce6949a6f853981991604 427 SUPERFAMILY SSF53474 113 215 1.33E-32 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS09535 6fb9b7ee194ce6949a6f853981991604 427 SUPERFAMILY SSF53474 248 328 1.33E-32 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS09535 6fb9b7ee194ce6949a6f853981991604 427 SUPERFAMILY SSF53474 359 386 1.33E-32 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS09535 6fb9b7ee194ce6949a6f853981991604 427 SUPERFAMILY SSF53474 53 80 1.33E-32 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS19355 dd63c76619fc9422ec976293baff3a8e 447 PANTHER PTHR23073 244 443 3.3E-37 T 23-04-2016 RD1_RS19355 dd63c76619fc9422ec976293baff3a8e 447 SMART SM00382 239 371 4.6E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS19355 dd63c76619fc9422ec976293baff3a8e 447 PANTHER PTHR23073:SF24 244 443 3.3E-37 T 23-04-2016 RD1_RS19355 dd63c76619fc9422ec976293baff3a8e 447 Gene3D G3DSA:1.10.8.60 378 437 5.1E-9 T 23-04-2016 RD1_RS19355 dd63c76619fc9422ec976293baff3a8e 447 Gene3D G3DSA:3.40.50.300 200 377 2.0E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS19355 dd63c76619fc9422ec976293baff3a8e 447 SUPERFAMILY SSF52540 199 436 1.23E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS19355 dd63c76619fc9422ec976293baff3a8e 447 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 244 367 8.4E-26 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RD1_RS11290 b54a7c20972c95356f173edc45965bd8 200 PIRSF PIRSF033239 2 200 1.4E-38 T 23-04-2016 IPR010331 Exopolysaccharide synthesis, ExoD RD1_RS11290 b54a7c20972c95356f173edc45965bd8 200 Pfam PF06055 Exopolysaccharide synthesis, ExoD 17 197 6.4E-40 T 23-04-2016 IPR010331 Exopolysaccharide synthesis, ExoD RD1_RS11290 b54a7c20972c95356f173edc45965bd8 200 PANTHER PTHR41795 1 200 5.4E-16 T 23-04-2016 RD1_RS12045 9c7aefb533acaa7bc9831dee7d944eb5 181 Pfam PF07811 TadE-like protein 18 58 5.6E-7 T 23-04-2016 IPR012495 TadE-like RD1_RS04475 4677a9a60c70f6d962bfe7b4a818c64e 657 Pfam PF01464 Transglycosylase SLT domain 488 589 8.8E-24 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 RD1_RS04475 4677a9a60c70f6d962bfe7b4a818c64e 657 PANTHER PTHR21666 460 631 1.4E-37 T 23-04-2016 RD1_RS04475 4677a9a60c70f6d962bfe7b4a818c64e 657 Gene3D G3DSA:1.10.530.10 489 635 2.1E-40 T 23-04-2016 RD1_RS04475 4677a9a60c70f6d962bfe7b4a818c64e 657 SUPERFAMILY SSF48435 30 467 5.36E-75 T 23-04-2016 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 RD1_RS04475 4677a9a60c70f6d962bfe7b4a818c64e 657 Gene3D G3DSA:1.25.20.10 32 386 1.1E-25 T 23-04-2016 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 RD1_RS04475 4677a9a60c70f6d962bfe7b4a818c64e 657 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 498 526 - T 23-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 RD1_RS04475 4677a9a60c70f6d962bfe7b4a818c64e 657 SUPERFAMILY SSF53955 486 639 1.09E-39 T 23-04-2016 IPR023346 Lysozyme-like domain RD1_RS20400 48a5203faca228e0b5a38d33e99d5d00 670 SUPERFAMILY SSF50182 485 547 2.13E-8 T 23-04-2016 IPR010920 LSM domain RD1_RS20400 48a5203faca228e0b5a38d33e99d5d00 670 PANTHER PTHR30460 432 649 2.6E-63 T 23-04-2016 RD1_RS20400 48a5203faca228e0b5a38d33e99d5d00 670 Gene3D G3DSA:2.30.30.60 501 546 1.9E-8 T 23-04-2016 RD1_RS20400 48a5203faca228e0b5a38d33e99d5d00 670 Pfam PF00924 Mechanosensitive ion channel 442 642 1.5E-39 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RD1_RS20400 48a5203faca228e0b5a38d33e99d5d00 670 PANTHER PTHR30460:SF0 432 649 2.6E-63 T 23-04-2016 RD1_RS20400 48a5203faca228e0b5a38d33e99d5d00 670 SUPERFAMILY SSF82689 548 648 4.84E-8 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RD1_RS20400 48a5203faca228e0b5a38d33e99d5d00 670 SUPERFAMILY SSF82861 385 483 5.1E-11 T 23-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RD1_RS07875 f614a060fcdc060695ab85eff773e278 176 Pfam PF04268 Sarcosine oxidase, gamma subunit family 29 158 1.3E-22 T 23-04-2016 IPR007375 Sarcosine oxidase, gamma subunit KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS07875 f614a060fcdc060695ab85eff773e278 176 SUPERFAMILY SSF103025 48 165 5.1E-12 T 23-04-2016 RD1_RS06220 a72c5e252e26ce639569c467948e8a25 372 Gene3D G3DSA:3.40.50.1110 14 342 3.6E-47 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RD1_RS06220 a72c5e252e26ce639569c467948e8a25 372 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 31 330 1.0E-9 T 23-04-2016 IPR001087 GDSL lipase/esterase GO:0016788 RD1_RS06220 a72c5e252e26ce639569c467948e8a25 372 TIGRFAM TIGR03370 VPLPA-CTERM: VPLPA-CTERM protein sorting domain 346 370 8.9E-7 T 23-04-2016 IPR022472 VPLPA-CTERM protein sorting domain RD1_RS06220 a72c5e252e26ce639569c467948e8a25 372 PANTHER PTHR22835:SF222 5 333 6.4E-15 T 23-04-2016 RD1_RS06220 a72c5e252e26ce639569c467948e8a25 372 SUPERFAMILY SSF52266 30 44 4.37E-9 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RD1_RS06220 a72c5e252e26ce639569c467948e8a25 372 SUPERFAMILY SSF52266 79 109 4.37E-9 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RD1_RS06220 a72c5e252e26ce639569c467948e8a25 372 SUPERFAMILY SSF52266 154 339 4.37E-9 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RD1_RS06220 a72c5e252e26ce639569c467948e8a25 372 PANTHER PTHR22835 5 333 6.4E-15 T 23-04-2016 RD1_RS06085 4e0eb51289b7fb713490f4d7ecf7bf34 298 SUPERFAMILY SSF103481 43 140 9.94E-9 T 23-04-2016 RD1_RS06085 4e0eb51289b7fb713490f4d7ecf7bf34 298 PANTHER PTHR12715 6 298 1.3E-27 T 23-04-2016 RD1_RS06085 4e0eb51289b7fb713490f4d7ecf7bf34 298 SUPERFAMILY SSF103481 189 291 4.18E-6 T 23-04-2016 RD1_RS06085 4e0eb51289b7fb713490f4d7ecf7bf34 298 Pfam PF00892 EamA-like transporter family 6 138 3.4E-11 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS06085 4e0eb51289b7fb713490f4d7ecf7bf34 298 Pfam PF00892 EamA-like transporter family 153 289 4.8E-11 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS17140 1d3dad1bb99735fc99302730acb6e549 148 Gene3D G3DSA:3.40.1650.10 1 145 2.0E-47 T 23-04-2016 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 RD1_RS17140 1d3dad1bb99735fc99302730acb6e549 148 SUPERFAMILY SSF102546 1 143 2.62E-39 T 23-04-2016 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 RD1_RS17140 1d3dad1bb99735fc99302730acb6e549 148 PANTHER PTHR31690 1 148 4.0E-46 T 23-04-2016 RD1_RS17140 1d3dad1bb99735fc99302730acb6e549 148 Pfam PF05025 RbsD / FucU transport protein family 3 143 9.4E-32 T 23-04-2016 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 RD1_RS13345 38858b106fe8d17a5ce97224e64dadbd 63 Gene3D G3DSA:1.20.5.510 1 31 1.4E-5 T 23-04-2016 RD1_RS06065 263fb2bd419246f15d822bfc4a3c07a5 178 PANTHER PTHR13256 14 155 5.6E-20 T 23-04-2016 RD1_RS06065 263fb2bd419246f15d822bfc4a3c07a5 178 Gene3D G3DSA:3.40.630.30 10 175 7.1E-30 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS06065 263fb2bd419246f15d822bfc4a3c07a5 178 Pfam PF13302 Acetyltransferase (GNAT) domain 18 152 7.9E-21 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS06065 263fb2bd419246f15d822bfc4a3c07a5 178 SUPERFAMILY SSF55729 10 159 3.99E-28 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS09595 8e3d4ffa451995a37707846513b4829c 161 SUPERFAMILY SSF55729 3 129 1.51E-18 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS09595 8e3d4ffa451995a37707846513b4829c 161 Gene3D G3DSA:3.40.630.30 3 146 7.3E-20 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS09595 8e3d4ffa451995a37707846513b4829c 161 Pfam PF13673 Acetyltransferase (GNAT) domain 53 128 1.3E-11 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS08320 20bb78505d6e6d1a1d539a63c512587c 183 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 14 155 19.864 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS08320 20bb78505d6e6d1a1d539a63c512587c 183 PANTHER PTHR21058 17 161 4.9E-36 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS08320 20bb78505d6e6d1a1d539a63c512587c 183 SUPERFAMILY SSF52121 11 156 1.96E-42 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS08320 20bb78505d6e6d1a1d539a63c512587c 183 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 19 150 3.0E-25 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS08320 20bb78505d6e6d1a1d539a63c512587c 183 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 19 152 2.1E-35 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS08320 20bb78505d6e6d1a1d539a63c512587c 183 Gene3D G3DSA:3.40.50.960 7 153 7.1E-43 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS02030 f0ea9d8608b1014dc127aae0b9b65188 149 Pfam PF03653 Uncharacterised protein family (UPF0093) 8 148 9.2E-58 T 23-04-2016 IPR005265 Uncharacterised protein family UPF0093 RD1_RS02030 f0ea9d8608b1014dc127aae0b9b65188 149 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 9 148 1.5E-44 T 23-04-2016 IPR014351 Conserved hypothetical protein CHP00701 RD1_RS02030 f0ea9d8608b1014dc127aae0b9b65188 149 PANTHER PTHR40255 7 148 1.1E-34 T 23-04-2016 RD1_RS02030 f0ea9d8608b1014dc127aae0b9b65188 149 PIRSF PIRSF004638 2 149 8.5E-54 T 23-04-2016 IPR005265 Uncharacterised protein family UPF0093 RD1_RS02520 30a8d50d0a9c79b6baa7cacf91c1b4de 228 PANTHER PTHR24220 5 228 2.1E-88 T 23-04-2016 RD1_RS02520 30a8d50d0a9c79b6baa7cacf91c1b4de 228 SMART SM00382 28 190 5.9E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS02520 30a8d50d0a9c79b6baa7cacf91c1b4de 228 Gene3D G3DSA:3.40.50.300 2 219 5.1E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02520 30a8d50d0a9c79b6baa7cacf91c1b4de 228 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS02520 30a8d50d0a9c79b6baa7cacf91c1b4de 228 Pfam PF00005 ABC transporter 21 157 1.4E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS02520 30a8d50d0a9c79b6baa7cacf91c1b4de 228 SUPERFAMILY SSF52540 3 219 2.09E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02520 30a8d50d0a9c79b6baa7cacf91c1b4de 228 PANTHER PTHR24220:SF568 5 228 2.1E-88 T 23-04-2016 RD1_RS16785 01efb4934f44baaa2850c172244bccb2 182 PRINTS PR00598 Bacterial regulatory protein MarR family signature 120 140 3.4E-9 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS16785 01efb4934f44baaa2850c172244bccb2 182 PRINTS PR00598 Bacterial regulatory protein MarR family signature 90 106 3.4E-9 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS16785 01efb4934f44baaa2850c172244bccb2 182 PRINTS PR00598 Bacterial regulatory protein MarR family signature 54 70 3.4E-9 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS16785 01efb4934f44baaa2850c172244bccb2 182 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 86 3.4E-9 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS16785 01efb4934f44baaa2850c172244bccb2 182 Pfam PF12802 MarR family 35 93 3.5E-14 T 23-04-2016 RD1_RS16785 01efb4934f44baaa2850c172244bccb2 182 PANTHER PTHR33164 4 154 1.2E-25 T 23-04-2016 RD1_RS16785 01efb4934f44baaa2850c172244bccb2 182 SMART SM00347 30 130 1.2E-17 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RD1_RS16785 01efb4934f44baaa2850c172244bccb2 182 SUPERFAMILY SSF46785 6 145 2.28E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS16785 01efb4934f44baaa2850c172244bccb2 182 Gene3D G3DSA:1.10.10.10 3 145 9.8E-38 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04120 1af2390dbea0ab91520fdaf17172485e 181 SUPERFAMILY SSF55961 28 175 1.56E-25 T 23-04-2016 RD1_RS04120 1af2390dbea0ab91520fdaf17172485e 181 Gene3D G3DSA:3.30.530.20 28 176 1.4E-34 T 23-04-2016 IPR023393 START-like domain RD1_RS04120 1af2390dbea0ab91520fdaf17172485e 181 PANTHER PTHR39332:SF2 19 180 7.1E-42 T 23-04-2016 RD1_RS04120 1af2390dbea0ab91520fdaf17172485e 181 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 28 175 3.1E-30 T 23-04-2016 IPR019587 Polyketide cyclase/dehydrase RD1_RS04120 1af2390dbea0ab91520fdaf17172485e 181 PANTHER PTHR39332 19 180 7.1E-42 T 23-04-2016 RD1_RS17675 0a88ee1169ec4691c66b8c5222896179 274 SUPERFAMILY SSF161098 18 269 1.19E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17675 0a88ee1169ec4691c66b8c5222896179 274 Gene3D G3DSA:1.10.3720.10 19 269 2.0E-54 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17675 0a88ee1169ec4691c66b8c5222896179 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 269 1.6E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS17675 0a88ee1169ec4691c66b8c5222896179 274 PANTHER PTHR30193:SF20 8 269 3.1E-66 T 23-04-2016 RD1_RS17675 0a88ee1169ec4691c66b8c5222896179 274 PANTHER PTHR30193 8 269 3.1E-66 T 23-04-2016 RD1_RS02630 d397d2d66cd0c540090c76be3ffcb9a0 382 Gene3D G3DSA:1.20.1250.20 199 373 9.3E-12 T 23-04-2016 RD1_RS02630 d397d2d66cd0c540090c76be3ffcb9a0 382 Gene3D G3DSA:1.20.1250.20 28 180 1.2E-6 T 23-04-2016 RD1_RS02630 d397d2d66cd0c540090c76be3ffcb9a0 382 SUPERFAMILY SSF103473 21 374 3.66E-29 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS02630 d397d2d66cd0c540090c76be3ffcb9a0 382 Pfam PF07690 Major Facilitator Superfamily 4 222 4.5E-9 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS02630 d397d2d66cd0c540090c76be3ffcb9a0 382 PANTHER PTHR23534 1 378 3.8E-49 T 23-04-2016 RD1_RS16515 9d3e99eeae6e371bca84b11ecb9b7a7b 389 PANTHER PTHR30483 4 369 7.4E-34 T 23-04-2016 RD1_RS16515 9d3e99eeae6e371bca84b11ecb9b7a7b 389 SUPERFAMILY SSF53822 21 373 7.59E-54 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS16515 9d3e99eeae6e371bca84b11ecb9b7a7b 389 PANTHER PTHR30483:SF6 4 369 7.4E-34 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RD1_RS16515 9d3e99eeae6e371bca84b11ecb9b7a7b 389 Gene3D G3DSA:3.40.50.2300 21 223 7.2E-28 T 23-04-2016 RD1_RS16515 9d3e99eeae6e371bca84b11ecb9b7a7b 389 Pfam PF13458 Periplasmic binding protein 22 369 2.0E-55 T 23-04-2016 IPR028081 Leucine-binding protein domain RD1_RS03585 5ea1cbecc4b587b32ecd975b7db930bd 577 SUPERFAMILY SSF52091 455 568 2.94E-16 T 23-04-2016 IPR002645 STAS domain RD1_RS03585 5ea1cbecc4b587b32ecd975b7db930bd 577 Pfam PF01740 STAS domain 458 564 4.0E-15 T 23-04-2016 IPR002645 STAS domain RD1_RS03585 5ea1cbecc4b587b32ecd975b7db930bd 577 Gene3D G3DSA:3.30.750.24 457 566 3.2E-15 T 23-04-2016 IPR002645 STAS domain RD1_RS03585 5ea1cbecc4b587b32ecd975b7db930bd 577 PANTHER PTHR11814 5 564 1.5E-182 T 23-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 RD1_RS03585 5ea1cbecc4b587b32ecd975b7db930bd 577 TIGRFAM TIGR00815 sulP: sulfate permease 10 554 1.9E-131 T 23-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 RD1_RS03585 5ea1cbecc4b587b32ecd975b7db930bd 577 Pfam PF00916 Sulfate permease family 23 406 8.4E-101 T 23-04-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RD1_RS14775 2157e20fa685c310bb028a1ed0301e1d 431 Gene3D G3DSA:1.10.230.10 283 376 7.0E-39 T 23-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain RD1_RS14775 2157e20fa685c310bb028a1ed0301e1d 431 Pfam PF00285 Citrate synthase, C-terminal domain 48 414 2.5E-131 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RD1_RS14775 2157e20fa685c310bb028a1ed0301e1d 431 SUPERFAMILY SSF48256 7 431 2.88E-163 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RD1_RS14775 2157e20fa685c310bb028a1ed0301e1d 431 PANTHER PTHR11739 40 431 7.4E-196 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RD1_RS14775 2157e20fa685c310bb028a1ed0301e1d 431 PIRSF PIRSF001369 40 431 5.0E-162 T 23-04-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 RD1_RS14775 2157e20fa685c310bb028a1ed0301e1d 431 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 15 425 1.7E-226 T 23-04-2016 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 UniPathway: UPA00223 RD1_RS14775 2157e20fa685c310bb028a1ed0301e1d 431 ProSitePatterns PS00480 Citrate synthase signature. 305 317 - T 23-04-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 RD1_RS14775 2157e20fa685c310bb028a1ed0301e1d 431 Gene3D G3DSA:1.10.580.10 54 282 2.8E-97 T 23-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 RD1_RS14775 2157e20fa685c310bb028a1ed0301e1d 431 PRINTS PR00143 Citrate synthase signature 167 180 2.6E-55 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RD1_RS14775 2157e20fa685c310bb028a1ed0301e1d 431 PRINTS PR00143 Citrate synthase signature 221 236 2.6E-55 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RD1_RS14775 2157e20fa685c310bb028a1ed0301e1d 431 PRINTS PR00143 Citrate synthase signature 298 318 2.6E-55 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RD1_RS14775 2157e20fa685c310bb028a1ed0301e1d 431 PRINTS PR00143 Citrate synthase signature 362 378 2.6E-55 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RD1_RS14775 2157e20fa685c310bb028a1ed0301e1d 431 PRINTS PR00143 Citrate synthase signature 382 396 2.6E-55 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RD1_RS14775 2157e20fa685c310bb028a1ed0301e1d 431 PRINTS PR00143 Citrate synthase signature 243 271 2.6E-55 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RD1_RS16330 67bd0c32cc79339aa1bdcf0903657c39 513 Pfam PF00361 Proton-conducting membrane transporter 127 416 3.4E-44 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RD1_RS16330 67bd0c32cc79339aa1bdcf0903657c39 513 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 235 259 1.1E-16 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RD1_RS16330 67bd0c32cc79339aa1bdcf0903657c39 513 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 132 151 1.1E-16 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RD1_RS16330 67bd0c32cc79339aa1bdcf0903657c39 513 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 327 346 1.1E-16 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RD1_RS16330 67bd0c32cc79339aa1bdcf0903657c39 513 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 162 186 1.1E-16 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RD1_RS16330 67bd0c32cc79339aa1bdcf0903657c39 513 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 378 404 1.1E-16 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RD1_RS16330 67bd0c32cc79339aa1bdcf0903657c39 513 PANTHER PTHR22773:SF49 1 502 2.0E-130 T 23-04-2016 RD1_RS16330 67bd0c32cc79339aa1bdcf0903657c39 513 PANTHER PTHR22773 1 502 2.0E-130 T 23-04-2016 RD1_RS01210 27d0942b2c52929396b29ec2926bcb73 243 PANTHER PTHR34933 48 243 5.6E-54 T 23-04-2016 RD1_RS01210 27d0942b2c52929396b29ec2926bcb73 243 PANTHER PTHR34933:SF1 48 243 5.6E-54 T 23-04-2016 RD1_RS01210 27d0942b2c52929396b29ec2926bcb73 243 Pfam PF02107 Flagellar L-ring protein 59 242 3.0E-54 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RD1_RS01210 27d0942b2c52929396b29ec2926bcb73 243 PRINTS PR01008 Flagellar L-ring protein signature 204 218 1.4E-23 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RD1_RS01210 27d0942b2c52929396b29ec2926bcb73 243 PRINTS PR01008 Flagellar L-ring protein signature 183 199 1.4E-23 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RD1_RS01210 27d0942b2c52929396b29ec2926bcb73 243 PRINTS PR01008 Flagellar L-ring protein signature 78 90 1.4E-23 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RD1_RS01210 27d0942b2c52929396b29ec2926bcb73 243 PRINTS PR01008 Flagellar L-ring protein signature 220 234 1.4E-23 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RD1_RS01210 27d0942b2c52929396b29ec2926bcb73 243 PRINTS PR01008 Flagellar L-ring protein signature 157 172 1.4E-23 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RD1_RS01210 27d0942b2c52929396b29ec2926bcb73 243 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 241 24.045 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RD1_RS13190 863ec8d9f4c4fd1b5ca2cb378ffbb037 694 PRINTS PR00743 Glycosyl hydrolase family 36 signature 429 444 5.0E-39 T 23-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RD1_RS13190 863ec8d9f4c4fd1b5ca2cb378ffbb037 694 PRINTS PR00743 Glycosyl hydrolase family 36 signature 209 224 5.0E-39 T 23-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RD1_RS13190 863ec8d9f4c4fd1b5ca2cb378ffbb037 694 PRINTS PR00743 Glycosyl hydrolase family 36 signature 295 309 5.0E-39 T 23-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RD1_RS13190 863ec8d9f4c4fd1b5ca2cb378ffbb037 694 PRINTS PR00743 Glycosyl hydrolase family 36 signature 323 338 5.0E-39 T 23-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RD1_RS13190 863ec8d9f4c4fd1b5ca2cb378ffbb037 694 PRINTS PR00743 Glycosyl hydrolase family 36 signature 257 277 5.0E-39 T 23-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RD1_RS13190 863ec8d9f4c4fd1b5ca2cb378ffbb037 694 PRINTS PR00743 Glycosyl hydrolase family 36 signature 495 511 5.0E-39 T 23-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RD1_RS13190 863ec8d9f4c4fd1b5ca2cb378ffbb037 694 PRINTS PR00743 Glycosyl hydrolase family 36 signature 373 395 5.0E-39 T 23-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RD1_RS13190 863ec8d9f4c4fd1b5ca2cb378ffbb037 694 Gene3D G3DSA:3.20.20.70 290 569 5.4E-42 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS13190 863ec8d9f4c4fd1b5ca2cb378ffbb037 694 Pfam PF02065 Melibiase 255 582 1.0E-101 T 23-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RD1_RS13190 863ec8d9f4c4fd1b5ca2cb378ffbb037 694 SUPERFAMILY SSF51445 291 614 1.38E-91 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RD1_RS13190 863ec8d9f4c4fd1b5ca2cb378ffbb037 694 Pfam PF16875 Glycosyl hydrolase family 36 N-terminal domain 24 242 3.0E-33 T 23-04-2016 IPR031704 Glycosyl hydrolase family 36, N-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RD1_RS13190 863ec8d9f4c4fd1b5ca2cb378ffbb037 694 PIRSF PIRSF005536 80 674 1.1E-163 T 23-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RD1_RS13190 863ec8d9f4c4fd1b5ca2cb378ffbb037 694 PANTHER PTHR22762:SF81 299 614 4.5E-58 T 23-04-2016 RD1_RS13190 863ec8d9f4c4fd1b5ca2cb378ffbb037 694 PANTHER PTHR22762 299 614 4.5E-58 T 23-04-2016 RD1_RS13190 863ec8d9f4c4fd1b5ca2cb378ffbb037 694 Pfam PF16874 Glycosyl hydrolase family 36 C-terminal domain 603 685 4.7E-8 T 23-04-2016 IPR031705 Glycosyl hydrolase family 36, C-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RD1_RS18640 49bdd0be2e444a4f77251d5ee35d6ad0 358 PANTHER PTHR34296 20 349 6.0E-122 T 23-04-2016 RD1_RS18640 49bdd0be2e444a4f77251d5ee35d6ad0 358 Pfam PF02608 Basic membrane protein 25 301 1.4E-43 T 23-04-2016 IPR003760 Basic membrane lipoprotein GO:0005886 RD1_RS18640 49bdd0be2e444a4f77251d5ee35d6ad0 358 Gene3D G3DSA:3.40.50.2300 23 163 2.4E-41 T 23-04-2016 RD1_RS18640 49bdd0be2e444a4f77251d5ee35d6ad0 358 PANTHER PTHR34296:SF1 20 349 6.0E-122 T 23-04-2016 RD1_RS14060 c19bc81f7a74d7c4be817329a98c4e70 121 SUPERFAMILY SSF52172 4 120 2.85E-35 T 23-04-2016 IPR011006 CheY-like superfamily RD1_RS14060 c19bc81f7a74d7c4be817329a98c4e70 121 Gene3D G3DSA:3.40.50.2300 3 119 1.5E-34 T 23-04-2016 RD1_RS14060 c19bc81f7a74d7c4be817329a98c4e70 121 PANTHER PTHR26402 3 120 5.7E-37 T 23-04-2016 RD1_RS14060 c19bc81f7a74d7c4be817329a98c4e70 121 SMART SM00448 3 116 3.3E-33 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS14060 c19bc81f7a74d7c4be817329a98c4e70 121 Pfam PF00072 Response regulator receiver domain 5 116 2.7E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RD1_RS12855 0675612f24f8eaa1497c9ad2968a0869 179 SUPERFAMILY SSF88723 1 114 2.52E-7 T 23-04-2016 IPR029060 PIN domain-like RD1_RS12855 0675612f24f8eaa1497c9ad2968a0869 179 Pfam PF13470 PIN domain 2 108 1.4E-13 T 23-04-2016 IPR002716 PIN domain RD1_RS06720 b09d716573a393ea4e6b00600b40e7a8 264 Pfam PF04116 Fatty acid hydroxylase superfamily 91 227 7.7E-26 T 23-04-2016 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 RD1_RS06720 b09d716573a393ea4e6b00600b40e7a8 264 PANTHER PTHR11863 3 39 2.2E-20 T 23-04-2016 RD1_RS06720 b09d716573a393ea4e6b00600b40e7a8 264 PANTHER PTHR11863 84 228 2.2E-20 T 23-04-2016 RD1_RS06720 b09d716573a393ea4e6b00600b40e7a8 264 PANTHER PTHR11863:SF2 3 39 2.2E-20 T 23-04-2016 RD1_RS06720 b09d716573a393ea4e6b00600b40e7a8 264 PANTHER PTHR11863:SF2 84 228 2.2E-20 T 23-04-2016 RD1_RS16710 90b04bd974607f063618aeed3e1ddf61 217 SMART SM01007 5 182 9.5E-60 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS16710 90b04bd974607f063618aeed3e1ddf61 217 Gene3D G3DSA:3.40.225.10 3 198 3.5E-58 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS16710 90b04bd974607f063618aeed3e1ddf61 217 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 6 181 5.3E-43 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS16710 90b04bd974607f063618aeed3e1ddf61 217 PANTHER PTHR22789:SF0 4 214 4.4E-77 T 23-04-2016 RD1_RS16710 90b04bd974607f063618aeed3e1ddf61 217 SUPERFAMILY SSF53639 3 211 4.32E-59 T 23-04-2016 IPR001303 Class II aldolase/adducin N-terminal RD1_RS16710 90b04bd974607f063618aeed3e1ddf61 217 PANTHER PTHR22789 4 214 4.4E-77 T 23-04-2016 RD1_RS05955 b76e1af8b69a40d23bad67c46c0df03a 151 Gene3D G3DSA:1.10.3450.10 42 145 1.9E-17 T 23-04-2016 IPR023203 TTHA0068-like domain RD1_RS05955 b76e1af8b69a40d23bad67c46c0df03a 151 SUPERFAMILY SSF140663 34 145 4.45E-25 T 23-04-2016 IPR023203 TTHA0068-like domain RD1_RS05955 b76e1af8b69a40d23bad67c46c0df03a 151 Pfam PF03745 Domain of unknown function (DUF309) 52 110 6.6E-14 T 23-04-2016 IPR005500 Protein of unknown function DUF309 RD1_RS18880 32103e7c65101f3efb37e49d040b7a99 1301 Gene3D G3DSA:2.150.10.10 350 504 1.4E-7 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS18880 32103e7c65101f3efb37e49d040b7a99 1301 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 987 1030 2.7E-4 T 23-04-2016 IPR010221 VCBS repeat RD1_RS18880 32103e7c65101f3efb37e49d040b7a99 1301 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 574 650 6.5E-8 T 23-04-2016 IPR010221 VCBS repeat RD1_RS18880 32103e7c65101f3efb37e49d040b7a99 1301 SMART SM00235 146 302 0.0045 T 23-04-2016 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 RD1_RS18880 32103e7c65101f3efb37e49d040b7a99 1301 Gene3D G3DSA:3.40.390.10 139 331 3.1E-26 T 23-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 RD1_RS18880 32103e7c65101f3efb37e49d040b7a99 1301 Pfam PF08548 Peptidase M10 serralysin C terminal 347 483 8.3E-20 T 23-04-2016 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 RD1_RS18880 32103e7c65101f3efb37e49d040b7a99 1301 SUPERFAMILY SSF55486 156 330 5.45E-26 T 23-04-2016 RD1_RS18880 32103e7c65101f3efb37e49d040b7a99 1301 SUPERFAMILY SSF51120 358 519 6.02E-17 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS14055 6449a0c5b5536b9664626713fb487993 91 Pfam PF13466 STAS domain 7 81 4.8E-11 T 23-04-2016 IPR002645 STAS domain RD1_RS14055 6449a0c5b5536b9664626713fb487993 91 Gene3D G3DSA:3.30.750.24 10 82 1.4E-8 T 23-04-2016 IPR002645 STAS domain RD1_RS14055 6449a0c5b5536b9664626713fb487993 91 SUPERFAMILY SSF52091 6 82 1.61E-8 T 23-04-2016 IPR002645 STAS domain RD1_RS16805 63483ee4007b813ef1f18097e39685bf 158 PANTHER PTHR30529 1 157 6.7E-20 T 23-04-2016 RD1_RS16805 63483ee4007b813ef1f18097e39685bf 158 Pfam PF01292 Prokaryotic cytochrome b561 1 158 1.5E-17 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RD1_RS16805 63483ee4007b813ef1f18097e39685bf 158 SUPERFAMILY SSF81342 1 158 1.65E-16 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RD1_RS07635 d5f96c8a0f2cf625700ddaf4f537d69f 151 SUPERFAMILY SSF52402 1 145 3.27E-15 T 23-04-2016 RD1_RS07635 d5f96c8a0f2cf625700ddaf4f537d69f 151 Pfam PF00582 Universal stress protein family 1 116 2.9E-14 T 23-04-2016 IPR006016 UspA GO:0006950 RD1_RS07635 d5f96c8a0f2cf625700ddaf4f537d69f 151 Gene3D G3DSA:3.40.50.620 1 139 4.9E-23 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS00050 514fb3c8b64580c5877152d6d25ece30 95 Pfam PF04267 Sarcosine oxidase, delta subunit family 2 83 9.0E-30 T 23-04-2016 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS13690 0bd0bca54bb1f5a55dd9613b2e15ad8d 337 Gene3D G3DSA:3.40.980.10 188 289 2.1E-7 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS13690 0bd0bca54bb1f5a55dd9613b2e15ad8d 337 SUPERFAMILY SSF53218 182 300 3.85E-13 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS07045 7caee764d77ef0b163351ea00ff3f5cb 355 PANTHER PTHR30574:SF1 5 346 4.8E-42 T 23-04-2016 RD1_RS07045 7caee764d77ef0b163351ea00ff3f5cb 355 PANTHER PTHR30574 5 346 4.8E-42 T 23-04-2016 RD1_RS07045 7caee764d77ef0b163351ea00ff3f5cb 355 Pfam PF04143 Sulphur transport 32 339 1.5E-53 T 23-04-2016 IPR007272 Sulphur transport domain RD1_RS01320 12fedb04fb9c8dc604eb9ac659d5f3ad 490 SUPERFAMILY SSF51905 43 373 3.77E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS01320 12fedb04fb9c8dc604eb9ac659d5f3ad 490 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 224 249 2.7E-5 T 23-04-2016 RD1_RS01320 12fedb04fb9c8dc604eb9ac659d5f3ad 490 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 44 66 2.7E-5 T 23-04-2016 RD1_RS01320 12fedb04fb9c8dc604eb9ac659d5f3ad 490 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 182 191 2.7E-5 T 23-04-2016 RD1_RS01320 12fedb04fb9c8dc604eb9ac659d5f3ad 490 PANTHER PTHR23023 40 100 9.9E-80 T 23-04-2016 RD1_RS01320 12fedb04fb9c8dc604eb9ac659d5f3ad 490 PANTHER PTHR23023 124 351 9.9E-80 T 23-04-2016 RD1_RS01320 12fedb04fb9c8dc604eb9ac659d5f3ad 490 Gene3D G3DSA:3.50.50.60 292 350 6.6E-8 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS01320 12fedb04fb9c8dc604eb9ac659d5f3ad 490 Gene3D G3DSA:3.50.50.60 234 258 6.6E-8 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS01320 12fedb04fb9c8dc604eb9ac659d5f3ad 490 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 46 259 2.7E-14 T 23-04-2016 RD1_RS01320 12fedb04fb9c8dc604eb9ac659d5f3ad 490 PANTHER PTHR23023:SF119 40 100 9.9E-80 T 23-04-2016 RD1_RS01320 12fedb04fb9c8dc604eb9ac659d5f3ad 490 PANTHER PTHR23023:SF119 124 351 9.9E-80 T 23-04-2016 RD1_RS01320 12fedb04fb9c8dc604eb9ac659d5f3ad 490 Gene3D G3DSA:3.50.50.60 43 233 1.5E-17 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS09325 133912cea2fcc6549d59f7b27072be7f 590 PANTHER PTHR10283 256 329 6.0E-126 T 23-04-2016 RD1_RS09325 133912cea2fcc6549d59f7b27072be7f 590 PANTHER PTHR10283 7 225 6.0E-126 T 23-04-2016 RD1_RS09325 133912cea2fcc6549d59f7b27072be7f 590 PANTHER PTHR10283 428 590 6.0E-126 T 23-04-2016 RD1_RS09325 133912cea2fcc6549d59f7b27072be7f 590 PANTHER PTHR10283:SF100 256 329 6.0E-126 T 23-04-2016 RD1_RS09325 133912cea2fcc6549d59f7b27072be7f 590 PANTHER PTHR10283:SF100 7 225 6.0E-126 T 23-04-2016 RD1_RS09325 133912cea2fcc6549d59f7b27072be7f 590 PANTHER PTHR10283:SF100 428 590 6.0E-126 T 23-04-2016 RD1_RS09325 133912cea2fcc6549d59f7b27072be7f 590 SUPERFAMILY SSF116726 212 291 5.62E-15 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS09325 133912cea2fcc6549d59f7b27072be7f 590 Pfam PF02080 TrkA-C domain 310 380 3.3E-7 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS09325 133912cea2fcc6549d59f7b27072be7f 590 Pfam PF02080 TrkA-C domain 217 287 4.0E-10 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS09325 133912cea2fcc6549d59f7b27072be7f 590 SUPERFAMILY SSF116726 302 387 7.85E-14 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS09325 133912cea2fcc6549d59f7b27072be7f 590 Pfam PF03600 Citrate transporter 16 537 6.5E-37 T 23-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 RD1_RS09325 133912cea2fcc6549d59f7b27072be7f 590 Gene3D G3DSA:3.30.70.1450 307 389 7.2E-12 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS09325 133912cea2fcc6549d59f7b27072be7f 590 Gene3D G3DSA:3.30.70.1450 214 294 3.0E-16 T 23-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RD1_RS09590 f120e108f98bd6bfc2f781c026e423e2 471 PANTHER PTHR38605:SF1 8 471 1.8E-136 T 23-04-2016 RD1_RS09590 f120e108f98bd6bfc2f781c026e423e2 471 Pfam PF04317 YcjX-like family, DUF463 30 471 8.2E-166 T 23-04-2016 IPR007413 Protein of unknown function DUF463, YcjX-like protein RD1_RS09590 f120e108f98bd6bfc2f781c026e423e2 471 PIRSF PIRSF019381 4 471 2.8E-165 T 23-04-2016 IPR007413 Protein of unknown function DUF463, YcjX-like protein RD1_RS09590 f120e108f98bd6bfc2f781c026e423e2 471 PANTHER PTHR38605 8 471 1.8E-136 T 23-04-2016 RD1_RS09110 4f340365eea24d0378ea98ceea0aeab8 105 SMART SM00086 32 75 1.3E-4 T 23-04-2016 IPR001610 PAC motif RD1_RS09110 4f340365eea24d0378ea98ceea0aeab8 105 Pfam PF08447 PAS fold 13 69 2.5E-6 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RD1_RS09110 4f340365eea24d0378ea98ceea0aeab8 105 SUPERFAMILY SSF55785 22 77 2.07E-9 T 23-04-2016 IPR000014 PAS domain RD1_RS09110 4f340365eea24d0378ea98ceea0aeab8 105 Gene3D G3DSA:3.30.450.20 9 93 3.5E-16 T 23-04-2016 RD1_RS11250 a07f90345039653cd2bdcd984b8926c7 193 Pfam PF01814 Hemerythrin HHE cation binding domain 28 161 5.1E-9 T 23-04-2016 IPR012312 Haemerythrin-like RD1_RS11250 a07f90345039653cd2bdcd984b8926c7 193 Gene3D G3DSA:1.20.120.520 25 181 1.1E-7 T 23-04-2016 RD1_RS02005 b319eab60062a26021e41ad802326c98 269 PANTHER PTHR13696 6 265 2.6E-86 T 23-04-2016 RD1_RS02005 b319eab60062a26021e41ad802326c98 269 Pfam PF13614 AAA domain 11 189 8.5E-61 T 23-04-2016 IPR025669 AAA domain RD1_RS02005 b319eab60062a26021e41ad802326c98 269 SUPERFAMILY SSF52540 10 264 7.32E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02005 b319eab60062a26021e41ad802326c98 269 Gene3D G3DSA:3.40.50.300 11 264 5.1E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02005 b319eab60062a26021e41ad802326c98 269 PANTHER PTHR13696:SF52 6 265 2.6E-86 T 23-04-2016 RD1_RS09620 ba88ce7c1508a9e84d5f3e5479f251bb 306 PANTHER PTHR30349:SF5 10 304 2.7E-73 T 23-04-2016 RD1_RS09620 ba88ce7c1508a9e84d5f3e5479f251bb 306 Pfam PF00589 Phage integrase family 124 291 1.5E-31 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RD1_RS09620 ba88ce7c1508a9e84d5f3e5479f251bb 306 Gene3D G3DSA:1.10.443.10 121 299 2.3E-46 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RD1_RS09620 ba88ce7c1508a9e84d5f3e5479f251bb 306 PANTHER PTHR30349 10 304 2.7E-73 T 23-04-2016 RD1_RS09620 ba88ce7c1508a9e84d5f3e5479f251bb 306 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 12 98 2.8E-15 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RD1_RS09620 ba88ce7c1508a9e84d5f3e5479f251bb 306 Gene3D G3DSA:1.10.150.130 10 103 5.7E-23 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal RD1_RS09620 ba88ce7c1508a9e84d5f3e5479f251bb 306 SUPERFAMILY SSF56349 9 299 4.12E-46 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RD1_RS09620 ba88ce7c1508a9e84d5f3e5479f251bb 306 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 8 306 29.438 T 23-04-2016 IPR023009 Tyrosine recombinase XerC/XerD RD1_RS09195 14e2e67c7cb6148e3bad4f7b0795de4f 314 Pfam PF11150 Protein of unknown function (DUF2927) 86 301 6.4E-66 T 23-04-2016 IPR021323 Protein of unknown function DUF2927 RD1_RS11395 e7b3584dab3bb11a7622382131956514 140 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 20 135 8.3E-21 T 23-04-2016 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III RD1_RS11395 e7b3584dab3bb11a7622382131956514 140 PANTHER PTHR41553 1 139 2.0E-14 T 23-04-2016 RD1_RS11395 e7b3584dab3bb11a7622382131956514 140 PANTHER PTHR41553:SF1 1 139 2.0E-14 T 23-04-2016 RD1_RS13905 76c9ed391ddfbdb8bbfde654f2f67cd6 112 Pfam PF05521 Phage head-tail joining protein 7 106 2.5E-20 T 23-04-2016 IPR008767 Bacteriophage SPP1, head-tail adaptor RD1_RS13905 76c9ed391ddfbdb8bbfde654f2f67cd6 112 TIGRFAM TIGR01563 gp16_SPP1: putative phage head-tail adaptor 6 108 4.2E-5 T 23-04-2016 IPR008767 Bacteriophage SPP1, head-tail adaptor RD1_RS16685 ae5510fe8aa4f80444161da98a8911a8 310 Pfam PF01261 Xylose isomerase-like TIM barrel 55 233 2.2E-7 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS16685 ae5510fe8aa4f80444161da98a8911a8 310 Gene3D G3DSA:3.20.20.150 29 187 3.9E-17 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS16685 ae5510fe8aa4f80444161da98a8911a8 310 SUPERFAMILY SSF51658 9 306 1.7E-42 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RD1_RS14450 61b05e621432a8f5e6a6bc6e8ebba465 171 Gene3D G3DSA:3.40.630.30 4 152 3.1E-30 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS14450 61b05e621432a8f5e6a6bc6e8ebba465 171 SUPERFAMILY SSF55729 4 153 1.72E-26 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS14450 61b05e621432a8f5e6a6bc6e8ebba465 171 PANTHER PTHR23091 1 151 2.9E-16 T 23-04-2016 RD1_RS14450 61b05e621432a8f5e6a6bc6e8ebba465 171 Pfam PF00583 Acetyltransferase (GNAT) family 72 148 1.1E-14 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS07545 4bf13af031a3d1efa025ceb7f95e1a60 281 PANTHER PTHR31527:SF0 4 280 2.6E-71 T 23-04-2016 RD1_RS07545 4bf13af031a3d1efa025ceb7f95e1a60 281 Pfam PF09347 Domain of unknown function (DUF1989) 46 227 4.0E-57 T 23-04-2016 IPR018959 Domain of unknown function DUF1989 RD1_RS07545 4bf13af031a3d1efa025ceb7f95e1a60 281 PANTHER PTHR31527 4 280 2.6E-71 T 23-04-2016 RD1_RS09065 fba8f4341d3ecd9a8e32a60022460f76 214 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 189 1.6E-9 T 23-04-2016 IPR023214 HAD-like domain RD1_RS09065 fba8f4341d3ecd9a8e32a60022460f76 214 Gene3D G3DSA:3.40.50.1000 8 199 1.0E-25 T 23-04-2016 IPR023214 HAD-like domain RD1_RS09065 fba8f4341d3ecd9a8e32a60022460f76 214 PANTHER PTHR12725:SF76 14 199 4.9E-28 T 23-04-2016 RD1_RS09065 fba8f4341d3ecd9a8e32a60022460f76 214 TIGRFAM TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 11 188 5.9E-55 T 23-04-2016 IPR010237 Pyrimidine 5-nucleotidase RD1_RS09065 fba8f4341d3ecd9a8e32a60022460f76 214 PANTHER PTHR12725 14 199 4.9E-28 T 23-04-2016 RD1_RS09065 fba8f4341d3ecd9a8e32a60022460f76 214 SUPERFAMILY SSF56784 9 211 8.42E-31 T 23-04-2016 IPR023214 HAD-like domain RD1_RS09065 fba8f4341d3ecd9a8e32a60022460f76 214 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 79 189 1.2E-9 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS18335 53792d66b8572af625dd2e27f7c0f84a 260 SUPERFAMILY SSF54001 93 240 7.66E-31 T 23-04-2016 RD1_RS18335 53792d66b8572af625dd2e27f7c0f84a 260 SMART SM00460 158 218 4.6E-13 T 23-04-2016 IPR002931 Transglutaminase-like RD1_RS18335 53792d66b8572af625dd2e27f7c0f84a 260 PANTHER PTHR33490:SF3 9 247 3.7E-40 T 23-04-2016 RD1_RS18335 53792d66b8572af625dd2e27f7c0f84a 260 PANTHER PTHR33490 9 247 3.7E-40 T 23-04-2016 RD1_RS18335 53792d66b8572af625dd2e27f7c0f84a 260 Gene3D G3DSA:3.90.260.10 140 225 5.8E-10 T 23-04-2016 IPR002931 Transglutaminase-like RD1_RS18335 53792d66b8572af625dd2e27f7c0f84a 260 Pfam PF01841 Transglutaminase-like superfamily 131 216 1.1E-19 T 23-04-2016 IPR002931 Transglutaminase-like RD1_RS08210 513809c0dfab24b34c3d0f3c7020381c 225 Pfam PF09976 Tetratricopeptide repeat-like domain 29 206 8.7E-7 T 23-04-2016 IPR018704 Tetratricopeptide repeat-like domain RD1_RS05065 743ae46408f25c76e372b07eed0fd6fd 161 SUPERFAMILY SSF53335 32 138 2.56E-6 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS05065 743ae46408f25c76e372b07eed0fd6fd 161 Pfam PF12692 S-adenosyl-L-methionine methyltransferase 1 161 8.8E-72 T 23-04-2016 IPR025690 Methyltransferase, putative RD1_RS04345 94c4a72fc51810bcda4f60dcf391a34e 98 SUPERFAMILY SSF55248 1 97 3.14E-34 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RD1_RS04345 94c4a72fc51810bcda4f60dcf391a34e 98 PANTHER PTHR12599:SF7 4 97 6.1E-41 T 23-04-2016 RD1_RS04345 94c4a72fc51810bcda4f60dcf391a34e 98 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 2 97 22.907 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RD1_RS04345 94c4a72fc51810bcda4f60dcf391a34e 98 Gene3D G3DSA:3.30.1360.20 2 97 1.2E-33 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RD1_RS04345 94c4a72fc51810bcda4f60dcf391a34e 98 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 4 95 7.1E-28 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RD1_RS04345 94c4a72fc51810bcda4f60dcf391a34e 98 PANTHER PTHR12599 4 97 6.1E-41 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RD1_RS01860 013a0a588adf7e706b699b026508a047 347 SUPERFAMILY SSF53800 16 345 3.11E-104 T 23-04-2016 RD1_RS01860 013a0a588adf7e706b699b026508a047 347 Gene3D G3DSA:3.40.50.1400 16 223 5.2E-61 T 23-04-2016 RD1_RS01860 013a0a588adf7e706b699b026508a047 347 Hamap MF_00323 Ferrochelatase [hemH]. 17 341 36.211 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RD1_RS01860 013a0a588adf7e706b699b026508a047 347 Gene3D G3DSA:3.40.50.1400 224 342 4.7E-35 T 23-04-2016 RD1_RS01860 013a0a588adf7e706b699b026508a047 347 TIGRFAM TIGR00109 hemH: ferrochelatase 16 341 2.4E-85 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RD1_RS01860 013a0a588adf7e706b699b026508a047 347 PANTHER PTHR11108 12 342 8.7E-110 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RD1_RS01860 013a0a588adf7e706b699b026508a047 347 Pfam PF00762 Ferrochelatase 18 339 8.5E-106 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RD1_RS14610 c605cdff1d4481a0a4c984bef653293b 248 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 8 243 2.8E-37 T 23-04-2016 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 RD1_RS14610 c605cdff1d4481a0a4c984bef653293b 248 PANTHER PTHR36925 3 247 1.8E-26 T 23-04-2016 RD1_RS01325 aa0d43d59d7cc79972037202eb81e96f 445 Pfam PF07690 Major Facilitator Superfamily 223 398 3.1E-15 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS01325 aa0d43d59d7cc79972037202eb81e96f 445 PANTHER PTHR23513:SF4 10 416 1.1E-33 T 23-04-2016 RD1_RS01325 aa0d43d59d7cc79972037202eb81e96f 445 PANTHER PTHR23513 10 416 1.1E-33 T 23-04-2016 RD1_RS01325 aa0d43d59d7cc79972037202eb81e96f 445 Gene3D G3DSA:1.20.1250.20 9 192 6.0E-10 T 23-04-2016 RD1_RS01325 aa0d43d59d7cc79972037202eb81e96f 445 Gene3D G3DSA:1.20.1250.20 213 395 3.5E-16 T 23-04-2016 RD1_RS01325 aa0d43d59d7cc79972037202eb81e96f 445 SUPERFAMILY SSF103473 10 396 1.14E-30 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS13745 151cee9e7d2987200fd704845ca0f2d4 144 SUPERFAMILY SSF54631 1 142 1.16E-31 T 23-04-2016 RD1_RS13745 151cee9e7d2987200fd704845ca0f2d4 144 PANTHER PTHR11911 1 133 8.7E-25 T 23-04-2016 RD1_RS13745 151cee9e7d2987200fd704845ca0f2d4 144 Gene3D G3DSA:3.10.580.10 3 125 1.9E-28 T 23-04-2016 RD1_RS13745 151cee9e7d2987200fd704845ca0f2d4 144 Pfam PF00571 CBS domain 73 126 1.0E-10 T 23-04-2016 IPR000644 CBS domain RD1_RS13745 151cee9e7d2987200fd704845ca0f2d4 144 Pfam PF00571 CBS domain 11 61 6.8E-12 T 23-04-2016 IPR000644 CBS domain RD1_RS13745 151cee9e7d2987200fd704845ca0f2d4 144 SMART SM00116 80 127 3.6E-5 T 23-04-2016 IPR000644 CBS domain RD1_RS13745 151cee9e7d2987200fd704845ca0f2d4 144 SMART SM00116 14 62 4.5E-5 T 23-04-2016 IPR000644 CBS domain RD1_RS13910 648d2c3b7235634aef94834df9d4304e 197 Pfam PF05135 Phage gp6-like head-tail connector protein 147 189 8.4E-5 T 23-04-2016 IPR021146 Phage gp6-like head-tail connector protein RD1_RS13910 648d2c3b7235634aef94834df9d4304e 197 TIGRFAM TIGR02215 phage_chp_gp8: phage conserved hypothetical protein, phiE125 gp8 family 1 193 1.3E-55 T 23-04-2016 IPR011738 Phage conserved hypothetical protein RD1_RS05055 6560de0c2076d68ab6ab0a97a45d6c21 641 SUPERFAMILY SSF53850 245 618 2.71E-78 T 23-04-2016 RD1_RS05055 6560de0c2076d68ab6ab0a97a45d6c21 641 SUPERFAMILY SSF53850 68 217 2.71E-78 T 23-04-2016 RD1_RS05055 6560de0c2076d68ab6ab0a97a45d6c21 641 Gene3D G3DSA:3.10.105.10 350 589 7.9E-35 T 23-04-2016 RD1_RS05055 6560de0c2076d68ab6ab0a97a45d6c21 641 PANTHER PTHR30290:SF18 251 637 8.7E-87 T 23-04-2016 RD1_RS05055 6560de0c2076d68ab6ab0a97a45d6c21 641 PANTHER PTHR30290:SF18 2 224 8.7E-87 T 23-04-2016 RD1_RS05055 6560de0c2076d68ab6ab0a97a45d6c21 641 PANTHER PTHR30290 251 637 8.7E-87 T 23-04-2016 RD1_RS05055 6560de0c2076d68ab6ab0a97a45d6c21 641 PANTHER PTHR30290 2 224 8.7E-87 T 23-04-2016 RD1_RS05055 6560de0c2076d68ab6ab0a97a45d6c21 641 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 100 518 4.6E-52 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain RD1_RS05055 6560de0c2076d68ab6ab0a97a45d6c21 641 Gene3D G3DSA:3.90.76.10 73 213 5.1E-23 T 23-04-2016 RD1_RS12165 4edcbadd87405ed29de63eaaf38c2461 474 PANTHER PTHR30425 170 474 1.7E-94 T 23-04-2016 RD1_RS12165 4edcbadd87405ed29de63eaaf38c2461 474 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 177 469 1.3E-85 T 23-04-2016 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 RD1_RS12165 4edcbadd87405ed29de63eaaf38c2461 474 PANTHER PTHR30425:SF3 170 474 1.7E-94 T 23-04-2016 RD1_RS12165 4edcbadd87405ed29de63eaaf38c2461 474 Gene3D G3DSA:1.10.3720.10 185 473 6.9E-40 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS12165 4edcbadd87405ed29de63eaaf38c2461 474 SUPERFAMILY SSF161098 198 461 2.75E-32 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS12165 4edcbadd87405ed29de63eaaf38c2461 474 Pfam PF12501 Phosphate ATP-binding cassette transporter 2 158 7.0E-46 T 23-04-2016 IPR022182 ABC transporter phosphate permease PstC, N-terminal domain GO:0006817 RD1_RS12165 4edcbadd87405ed29de63eaaf38c2461 474 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 253 470 1.4E-14 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS06255 a6dd8ce42a4539f29f7009b019c2239f 270 Gene3D G3DSA:3.40.630.30 124 254 1.2E-6 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS06255 a6dd8ce42a4539f29f7009b019c2239f 270 SUPERFAMILY SSF55729 153 251 3.67E-11 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS17270 110ed756125b9913176fce0e5706c703 366 PIRSF PIRSF039026 6 351 6.0E-84 T 23-04-2016 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like RD1_RS17270 110ed756125b9913176fce0e5706c703 366 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 52 328 1.1E-43 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS17270 110ed756125b9913176fce0e5706c703 366 PANTHER PTHR33376 5 351 2.9E-52 T 23-04-2016 RD1_RS09900 6b2b424e084840322860b4ad7fcfc86d 194 Gene3D G3DSA:3.40.630.30 8 183 2.7E-49 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS09900 6b2b424e084840322860b4ad7fcfc86d 194 SUPERFAMILY SSF55729 8 183 2.09E-43 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS09900 6b2b424e084840322860b4ad7fcfc86d 194 PANTHER PTHR13256:SF24 6 188 1.1E-48 T 23-04-2016 RD1_RS09900 6b2b424e084840322860b4ad7fcfc86d 194 PANTHER PTHR13256 6 188 1.1E-48 T 23-04-2016 RD1_RS09900 6b2b424e084840322860b4ad7fcfc86d 194 Pfam PF13302 Acetyltransferase (GNAT) domain 14 159 4.3E-23 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 PRINTS PR00313 NodO calcium binding signature 51 62 2.8E-9 T 23-04-2016 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 PRINTS PR00313 NodO calcium binding signature 72 80 2.8E-9 T 23-04-2016 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 PRINTS PR00313 NodO calcium binding signature 99 107 2.8E-9 T 23-04-2016 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 PRINTS PR00313 NodO calcium binding signature 290 299 2.8E-9 T 23-04-2016 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 SUPERFAMILY SSF51120 16 132 3.79E-22 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 SUPERFAMILY SSF51120 184 327 3.01E-18 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 302 317 8.9 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 36 51 3.2 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 54 70 0.07 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 458 474 2.9E-4 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 111 125 15.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 254 270 7.1 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 439 456 0.77 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 272 287 0.0064 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 89 106 0.0014 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 71 88 0.023 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 18 34 18.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 SUPERFAMILY SSF51120 375 530 4.84E-19 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 Gene3D G3DSA:2.150.10.10 185 348 4.2E-12 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 Gene3D G3DSA:2.150.10.10 16 160 2.1E-24 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS18295 374b7fbd055335f06a216401a897bd33 548 Gene3D G3DSA:2.150.10.10 376 547 7.3E-16 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RD1_RS11180 461aa3d1c417979402f10dfb9d61cc64 76 PANTHER PTHR37301 2 73 8.7E-29 T 23-04-2016 RD1_RS11180 461aa3d1c417979402f10dfb9d61cc64 76 SUPERFAMILY SSF47413 1 70 1.83E-17 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS11180 461aa3d1c417979402f10dfb9d61cc64 76 SMART SM00530 6 62 2.5E-5 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS11180 461aa3d1c417979402f10dfb9d61cc64 76 Gene3D G3DSA:1.10.260.40 1 66 8.8E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS11180 461aa3d1c417979402f10dfb9d61cc64 76 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 65 7.4E-22 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS03425 0d51461cce779853a36ca2d410a2577b 65 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 65 5.5E-18 T 23-04-2016 IPR010035 ThiS, thiamine-biosynthesis RD1_RS03425 0d51461cce779853a36ca2d410a2577b 65 Gene3D G3DSA:3.10.20.30 1 65 1.6E-19 T 23-04-2016 IPR012675 Beta-grasp domain RD1_RS03425 0d51461cce779853a36ca2d410a2577b 65 PANTHER PTHR34472 1 65 5.7E-15 T 23-04-2016 RD1_RS03425 0d51461cce779853a36ca2d410a2577b 65 SUPERFAMILY SSF54285 2 64 4.06E-15 T 23-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RD1_RS03425 0d51461cce779853a36ca2d410a2577b 65 Pfam PF02597 ThiS family 8 65 5.2E-12 T 23-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 RD1_RS03425 0d51461cce779853a36ca2d410a2577b 65 PANTHER PTHR34472:SF1 1 65 5.7E-15 T 23-04-2016 RD1_RS10650 8ce40bfc49cf868c69d2ff24ab5004c3 296 Pfam PF00248 Aldo/keto reductase family 14 287 1.1E-55 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS10650 8ce40bfc49cf868c69d2ff24ab5004c3 296 Gene3D G3DSA:3.20.20.100 2 293 2.8E-63 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS10650 8ce40bfc49cf868c69d2ff24ab5004c3 296 PRINTS PR00069 Aldo-keto reductase signature 144 161 3.9E-7 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RD1_RS10650 8ce40bfc49cf868c69d2ff24ab5004c3 296 PRINTS PR00069 Aldo-keto reductase signature 113 131 3.9E-7 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RD1_RS10650 8ce40bfc49cf868c69d2ff24ab5004c3 296 PANTHER PTHR11732:SF10 1 296 1.6E-103 T 23-04-2016 RD1_RS10650 8ce40bfc49cf868c69d2ff24ab5004c3 296 SUPERFAMILY SSF51430 4 294 3.93E-69 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RD1_RS10650 8ce40bfc49cf868c69d2ff24ab5004c3 296 PANTHER PTHR11732 1 296 1.6E-103 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RD1_RS10990 6ebf9ec8e5ac781b879f621b28f7fb0c 288 Pfam PF06007 Phosphonate metabolism protein PhnJ 3 274 4.9E-142 T 23-04-2016 IPR010306 Phosphonate metabolism PhnJ GO:0016829|GO:0019700|GO:0042916 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399 RD1_RS10990 6ebf9ec8e5ac781b879f621b28f7fb0c 288 PIRSF PIRSF011468 1 285 4.5E-154 T 23-04-2016 IPR010306 Phosphonate metabolism PhnJ GO:0016829|GO:0019700|GO:0042916 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399 RD1_RS07830 0e4d9ef899f1aeb46fc5ad23359658c5 222 Pfam PF07298 NnrU protein 7 219 3.1E-61 T 23-04-2016 IPR009915 NnrU domain RD1_RS03460 66d14db26e42187dc42b678264225af5 217 PIRSF PIRSF003170 1 212 4.1E-55 T 23-04-2016 IPR026285 TenA_E protein RD1_RS03460 66d14db26e42187dc42b678264225af5 217 PANTHER PTHR20858 1 176 3.8E-40 T 23-04-2016 RD1_RS03460 66d14db26e42187dc42b678264225af5 217 SUPERFAMILY SSF48613 1 210 8.9E-52 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RD1_RS03460 66d14db26e42187dc42b678264225af5 217 PANTHER PTHR20858:SF18 1 176 3.8E-40 T 23-04-2016 RD1_RS03460 66d14db26e42187dc42b678264225af5 217 Gene3D G3DSA:1.20.910.10 1 210 2.8E-50 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RD1_RS03460 66d14db26e42187dc42b678264225af5 217 Pfam PF03070 TENA/THI-4/PQQC family 15 210 9.4E-19 T 23-04-2016 IPR004305 Thiaminase-2/PQQC RD1_RS16405 d50151323b48d4507e72213c01109e70 551 Gene3D G3DSA:1.20.58.220 332 430 4.0E-4 T 23-04-2016 RD1_RS16405 d50151323b48d4507e72213c01109e70 551 Gene3D G3DSA:1.20.58.220 446 509 2.2E-5 T 23-04-2016 RD1_RS16405 d50151323b48d4507e72213c01109e70 551 Pfam PF02690 Na+/Pi-cotransporter 19 154 1.1E-25 T 23-04-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: REACT_15518 RD1_RS16405 d50151323b48d4507e72213c01109e70 551 SUPERFAMILY SSF109755 327 527 4.71E-23 T 23-04-2016 RD1_RS12135 44e52ec0707d1e5e89048ce4cc871427 296 PANTHER PTHR30636 1 296 1.4E-78 T 23-04-2016 RD1_RS12135 44e52ec0707d1e5e89048ce4cc871427 296 Pfam PF03755 YicC-like family, N-terminal region 2 159 3.7E-32 T 23-04-2016 IPR013527 YicC-like, N-terminal RD1_RS12135 44e52ec0707d1e5e89048ce4cc871427 296 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 296 8.7E-62 T 23-04-2016 IPR005229 Conserved hypothetical protein CHP00255 RD1_RS12135 44e52ec0707d1e5e89048ce4cc871427 296 Pfam PF08340 Domain of unknown function (DUF1732) 212 296 6.4E-33 T 23-04-2016 IPR013551 Domain of unknown function DUF1732 RD1_RS10675 b5efa200d5fde2e530421f175ae31162 156 PANTHER PTHR11102 41 126 2.2E-14 T 23-04-2016 RD1_RS10675 b5efa200d5fde2e530421f175ae31162 156 SMART SM00671 47 82 4.4E-8 T 23-04-2016 IPR006597 Sel1-like repeat RD1_RS10675 b5efa200d5fde2e530421f175ae31162 156 SMART SM00671 83 119 1.1 T 23-04-2016 IPR006597 Sel1-like repeat RD1_RS10675 b5efa200d5fde2e530421f175ae31162 156 SUPERFAMILY SSF81901 22 126 9.68E-18 T 23-04-2016 RD1_RS10675 b5efa200d5fde2e530421f175ae31162 156 Gene3D G3DSA:1.25.40.10 15 134 1.1E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS10675 b5efa200d5fde2e530421f175ae31162 156 Pfam PF08238 Sel1 repeat 47 82 3.2E-8 T 23-04-2016 IPR006597 Sel1-like repeat RD1_RS10675 b5efa200d5fde2e530421f175ae31162 156 Pfam PF08238 Sel1 repeat 85 118 0.0063 T 23-04-2016 IPR006597 Sel1-like repeat RD1_RS06975 f1e441e85537e986dd61d67151c96fbd 111 PANTHER PTHR33154 18 108 2.7E-24 T 23-04-2016 RD1_RS06975 f1e441e85537e986dd61d67151c96fbd 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 76 91 2.8E-10 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS06975 f1e441e85537e986dd61d67151c96fbd 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 44 2.8E-10 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS06975 f1e441e85537e986dd61d67151c96fbd 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 61 76 2.8E-10 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS06975 f1e441e85537e986dd61d67151c96fbd 111 Pfam PF01022 Bacterial regulatory protein, arsR family 35 79 2.5E-10 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS06975 f1e441e85537e986dd61d67151c96fbd 111 SUPERFAMILY SSF46785 20 109 5.36E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS06975 f1e441e85537e986dd61d67151c96fbd 111 SMART SM00418 27 105 6.0E-24 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS06975 f1e441e85537e986dd61d67151c96fbd 111 Gene3D G3DSA:1.10.10.10 14 109 8.1E-36 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS01410 faf45bf11d5fa80b324dc40855262d62 224 SUPERFAMILY SSF46894 116 215 1.11E-5 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RD1_RS01410 faf45bf11d5fa80b324dc40855262d62 224 Gene3D G3DSA:1.10.10.10 117 214 5.8E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS15140 a78b76e34cf60d0a0c5341bf4f204a70 221 Gene3D G3DSA:1.20.1050.10 87 202 2.4E-15 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS15140 a78b76e34cf60d0a0c5341bf4f204a70 221 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 71 2.9E-13 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RD1_RS15140 a78b76e34cf60d0a0c5341bf4f204a70 221 SUPERFAMILY SSF52833 1 79 1.95E-19 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS15140 a78b76e34cf60d0a0c5341bf4f204a70 221 PANTHER PTHR11260 2 204 4.6E-28 T 23-04-2016 RD1_RS15140 a78b76e34cf60d0a0c5341bf4f204a70 221 Gene3D G3DSA:3.40.30.10 2 82 5.4E-21 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS15140 a78b76e34cf60d0a0c5341bf4f204a70 221 Pfam PF00043 Glutathione S-transferase, C-terminal domain 130 197 4.7E-7 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal RD1_RS15140 a78b76e34cf60d0a0c5341bf4f204a70 221 SUPERFAMILY SSF47616 70 204 4.18E-17 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RD1_RS10925 65725e41c57e8964b76eb5f97ca973f7 454 SUPERFAMILY SSF75011 92 386 9.15E-18 T 23-04-2016 RD1_RS10925 65725e41c57e8964b76eb5f97ca973f7 454 PANTHER PTHR23300 1 454 2.6E-271 T 23-04-2016 IPR008826 Selenium-binding protein GO:0008430 RD1_RS10925 65725e41c57e8964b76eb5f97ca973f7 454 Pfam PF05694 56kDa selenium binding protein (SBP56) 8 454 2.4E-214 T 23-04-2016 IPR008826 Selenium-binding protein GO:0008430 RD1_RS10925 65725e41c57e8964b76eb5f97ca973f7 454 Gene3D G3DSA:2.130.10.10 223 385 4.2E-9 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RD1_RS03415 a79db1a63ede454bd232aad4c48de481 259 SUPERFAMILY SSF53613 2 258 8.11E-79 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS03415 a79db1a63ede454bd232aad4c48de481 259 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 5 254 2.2E-90 T 23-04-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RD1_RS03415 a79db1a63ede454bd232aad4c48de481 259 PANTHER PTHR20858:SF17 4 258 7.4E-107 T 23-04-2016 RD1_RS03415 a79db1a63ede454bd232aad4c48de481 259 Gene3D G3DSA:3.40.1190.20 4 255 6.6E-97 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS03415 a79db1a63ede454bd232aad4c48de481 259 Pfam PF08543 Phosphomethylpyrimidine kinase 12 252 3.8E-89 T 23-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 RD1_RS03415 a79db1a63ede454bd232aad4c48de481 259 PANTHER PTHR20858 4 258 7.4E-107 T 23-04-2016 RD1_RS19160 1fa528b43cfe895ecd5ecce53edf31e8 557 PANTHER PTHR11819 492 544 3.2E-32 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RD1_RS19160 1fa528b43cfe895ecd5ecce53edf31e8 557 PANTHER PTHR11819 11 456 3.2E-32 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RD1_RS19160 1fa528b43cfe895ecd5ecce53edf31e8 557 Pfam PF00474 Sodium:solute symporter family 42 432 1.2E-26 T 23-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RD1_RS01665 c3545732c5a9847bfaeab94002e2742a 680 PANTHER PTHR37947 5 670 2.9E-38 T 23-04-2016 RD1_RS01665 c3545732c5a9847bfaeab94002e2742a 680 Gene3D G3DSA:3.40.50.880 252 505 4.9E-33 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS01665 c3545732c5a9847bfaeab94002e2742a 680 SUPERFAMILY SSF52317 257 506 2.52E-53 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS11365 65ae2d0fe1d3058f74c3b9c993981a2f 127 Pfam PF13430 Domain of unknown function (DUF4112) 14 115 4.8E-29 T 23-04-2016 IPR025187 Protein of unknown function DUF4112 RD1_RS11365 65ae2d0fe1d3058f74c3b9c993981a2f 127 PANTHER PTHR35519 14 113 6.8E-21 T 23-04-2016 RD1_RS07700 535a04ebe49539c837940eeef3d91bdc 174 Pfam PF04945 YHS domain 60 95 1.8E-7 T 23-04-2016 IPR007029 YHS domain RD1_RS10630 1ca25e6fcaf45470a2cb9361368293cd 153 Pfam PF04214 Protein of unknown function, DUF 60 126 3.8E-31 T 23-04-2016 IPR007332 Protein of unknown function DUF411 RD1_RS10630 1ca25e6fcaf45470a2cb9361368293cd 153 Gene3D G3DSA:3.40.30.10 28 75 6.6E-4 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS13075 4326af40faf96560d22c1ab6d0f89d81 429 Gene3D G3DSA:1.10.260.40 8 71 2.0E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS13075 4326af40faf96560d22c1ab6d0f89d81 429 Pfam PF12844 Helix-turn-helix domain 8 68 7.7E-12 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS13075 4326af40faf96560d22c1ab6d0f89d81 429 SMART SM00530 10 65 4.6E-13 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RD1_RS13075 4326af40faf96560d22c1ab6d0f89d81 429 SUPERFAMILY SSF47413 7 69 6.97E-14 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS13075 4326af40faf96560d22c1ab6d0f89d81 429 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 308 424 1.7E-9 T 23-04-2016 IPR018653 Domain of unknown function DUF2083,transcriptional regulator RD1_RS10780 53393d27228da7629dcecf69e0ce9f40 163 Pfam PF00583 Acetyltransferase (GNAT) family 58 139 8.6E-15 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS10780 53393d27228da7629dcecf69e0ce9f40 163 Gene3D G3DSA:3.40.630.30 5 142 2.5E-25 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS10780 53393d27228da7629dcecf69e0ce9f40 163 PANTHER PTHR10545 1 145 4.5E-17 T 23-04-2016 RD1_RS10780 53393d27228da7629dcecf69e0ce9f40 163 SUPERFAMILY SSF55729 6 143 1.29E-22 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS14330 d21be3bef7cee954f9a6e942dd288a82 490 SUPERFAMILY SSF52949 32 143 3.18E-5 T 23-04-2016 RD1_RS14330 d21be3bef7cee954f9a6e942dd288a82 490 Gene3D G3DSA:3.40.630.10 161 486 4.7E-129 T 23-04-2016 RD1_RS14330 d21be3bef7cee954f9a6e942dd288a82 490 PRINTS PR00481 Cytosol aminopeptidase signature 330 350 4.1E-50 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RD1_RS14330 d21be3bef7cee954f9a6e942dd288a82 490 PRINTS PR00481 Cytosol aminopeptidase signature 359 374 4.1E-50 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RD1_RS14330 d21be3bef7cee954f9a6e942dd288a82 490 PRINTS PR00481 Cytosol aminopeptidase signature 249 266 4.1E-50 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RD1_RS14330 d21be3bef7cee954f9a6e942dd288a82 490 PRINTS PR00481 Cytosol aminopeptidase signature 308 329 4.1E-50 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RD1_RS14330 d21be3bef7cee954f9a6e942dd288a82 490 PRINTS PR00481 Cytosol aminopeptidase signature 271 292 4.1E-50 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RD1_RS14330 d21be3bef7cee954f9a6e942dd288a82 490 PANTHER PTHR11963 120 486 5.3E-164 T 23-04-2016 RD1_RS14330 d21be3bef7cee954f9a6e942dd288a82 490 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 334 341 - T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RD1_RS14330 d21be3bef7cee954f9a6e942dd288a82 490 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 174 479 2.3E-115 T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RD1_RS14330 d21be3bef7cee954f9a6e942dd288a82 490 PANTHER PTHR11963:SF13 120 486 5.3E-164 T 23-04-2016 RD1_RS14330 d21be3bef7cee954f9a6e942dd288a82 490 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 9 488 32.222 T 23-04-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 RD1_RS14330 d21be3bef7cee954f9a6e942dd288a82 490 SUPERFAMILY SSF53187 168 485 1.32E-112 T 23-04-2016 RD1_RS00710 3c01a6c47354f5f89cce48277312f6c8 87 Pfam PF01527 Transposase 4 70 7.9E-14 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RD1_RS00710 3c01a6c47354f5f89cce48277312f6c8 87 SUPERFAMILY SSF46689 2 70 5.38E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS00710 3c01a6c47354f5f89cce48277312f6c8 87 PANTHER PTHR33609 1 80 8.7E-24 T 23-04-2016 RD1_RS00710 3c01a6c47354f5f89cce48277312f6c8 87 Gene3D G3DSA:1.10.10.60 12 83 6.5E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS13980 b27ac835c3e7eb5ca4e54df262992944 192 Pfam PF04264 YceI-like domain 23 188 2.1E-35 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS13980 b27ac835c3e7eb5ca4e54df262992944 192 PANTHER PTHR34406 4 192 1.1E-43 T 23-04-2016 RD1_RS13980 b27ac835c3e7eb5ca4e54df262992944 192 SUPERFAMILY SSF101874 19 190 1.96E-48 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS13980 b27ac835c3e7eb5ca4e54df262992944 192 Gene3D G3DSA:2.40.128.110 22 191 1.1E-49 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS13980 b27ac835c3e7eb5ca4e54df262992944 192 PANTHER PTHR34406:SF1 4 192 1.1E-43 T 23-04-2016 RD1_RS13980 b27ac835c3e7eb5ca4e54df262992944 192 SMART SM00867 22 189 7.3E-60 T 23-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RD1_RS02210 501fd39a7c23db805155faf23440985c 268 Gene3D G3DSA:3.90.226.10 6 265 8.3E-71 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS02210 501fd39a7c23db805155faf23440985c 268 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 266 2.9E-54 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RD1_RS02210 501fd39a7c23db805155faf23440985c 268 PANTHER PTHR11941:SF28 5 265 5.8E-115 T 23-04-2016 RD1_RS02210 501fd39a7c23db805155faf23440985c 268 SUPERFAMILY SSF52096 8 267 8.97E-77 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS02210 501fd39a7c23db805155faf23440985c 268 PANTHER PTHR11941 5 265 5.8E-115 T 23-04-2016 RD1_RS09925 40f7f75190be19f93b2e9a76658a2c43 206 PANTHER PTHR30086 1 206 3.3E-49 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS09925 40f7f75190be19f93b2e9a76658a2c43 206 PIRSF PIRSF006324 1 204 1.2E-60 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS09925 40f7f75190be19f93b2e9a76658a2c43 206 PANTHER PTHR30086:SF14 1 206 3.3E-49 T 23-04-2016 RD1_RS09925 40f7f75190be19f93b2e9a76658a2c43 206 Pfam PF01810 LysE type translocator 15 198 4.6E-32 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS06840 9691f04e8621e803d669d3da339828fc 329 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 28 308 1.6E-41 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS06840 9691f04e8621e803d669d3da339828fc 329 PANTHER PTHR33376 5 329 6.5E-46 T 23-04-2016 RD1_RS12170 c6fac779f017c2d5705ba833040d96b8 454 SUPERFAMILY SSF161098 225 441 3.92E-33 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS12170 c6fac779f017c2d5705ba833040d96b8 454 PANTHER PTHR30425 30 69 1.8E-87 T 23-04-2016 RD1_RS12170 c6fac779f017c2d5705ba833040d96b8 454 PANTHER PTHR30425 195 453 1.8E-87 T 23-04-2016 RD1_RS12170 c6fac779f017c2d5705ba833040d96b8 454 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 206 451 5.9E-64 T 23-04-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 RD1_RS12170 c6fac779f017c2d5705ba833040d96b8 454 PANTHER PTHR30425:SF2 30 69 1.8E-87 T 23-04-2016 RD1_RS12170 c6fac779f017c2d5705ba833040d96b8 454 PANTHER PTHR30425:SF2 195 453 1.8E-87 T 23-04-2016 RD1_RS12170 c6fac779f017c2d5705ba833040d96b8 454 Gene3D G3DSA:1.10.3720.10 53 71 2.1E-40 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS12170 c6fac779f017c2d5705ba833040d96b8 454 Gene3D G3DSA:1.10.3720.10 214 453 2.1E-40 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS12170 c6fac779f017c2d5705ba833040d96b8 454 Pfam PF11812 Domain of unknown function (DUF3333) 27 179 1.0E-48 T 23-04-2016 IPR024573 Domain of unknown function DUF3333 RD1_RS12170 c6fac779f017c2d5705ba833040d96b8 454 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 249 453 1.3E-20 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS09730 f5668cdafd950395665aadf44bc246b2 203 SUPERFAMILY SSF50800 11 185 6.28E-37 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain RD1_RS09730 f5668cdafd950395665aadf44bc246b2 203 Gene3D G3DSA:2.40.33.20 6 192 2.0E-74 T 23-04-2016 IPR015808 Molybdenum cofactor sulfurase, C-terminal-like RD1_RS09730 f5668cdafd950395665aadf44bc246b2 203 Pfam PF03473 MOSC domain 68 180 3.3E-7 T 23-04-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 RD1_RS00955 8eecbbaf1b1880c1653e04a65304b286 87 Pfam PF01649 Ribosomal protein S20 2 84 6.8E-28 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS00955 8eecbbaf1b1880c1653e04a65304b286 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 84 7.5E-22 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS00955 8eecbbaf1b1880c1653e04a65304b286 87 Gene3D G3DSA:1.20.58.110 1 86 6.6E-32 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS00955 8eecbbaf1b1880c1653e04a65304b286 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 86 8.0E-27 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS00955 8eecbbaf1b1880c1653e04a65304b286 87 SUPERFAMILY SSF46992 3 86 2.88E-30 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS00955 8eecbbaf1b1880c1653e04a65304b286 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.421 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS00955 8eecbbaf1b1880c1653e04a65304b286 87 PANTHER PTHR33398 1 84 2.2E-31 T 23-04-2016 RD1_RS16100 7c929fc2f2df47fda427e8d8c24baa8e 80 Pfam PF04380 Membrane fusogenic activity 2 78 3.1E-27 T 23-04-2016 IPR007475 Membrane fusogenic activity RD1_RS06485 0b5f5027f345952128547d35aefad8aa 98 Gene3D G3DSA:3.30.70.330 6 97 1.5E-35 T 23-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 RD1_RS06485 0b5f5027f345952128547d35aefad8aa 98 PANTHER PTHR11620 4 94 1.8E-29 T 23-04-2016 RD1_RS06485 0b5f5027f345952128547d35aefad8aa 98 SUPERFAMILY SSF54189 6 94 1.37E-32 T 23-04-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RD1_RS06485 0b5f5027f345952128547d35aefad8aa 98 Pfam PF00276 Ribosomal protein L23 9 94 4.6E-32 T 23-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RD1_RS06485 0b5f5027f345952128547d35aefad8aa 98 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 97 21.346 T 23-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RD1_RS07200 e779301b1a2eff430e41342fda47daec 635 Gene3D G3DSA:3.40.50.410 445 595 9.2E-7 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS07200 e779301b1a2eff430e41342fda47daec 635 SUPERFAMILY SSF53300 441 621 1.08E-16 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS07200 e779301b1a2eff430e41342fda47daec 635 PANTHER PTHR41248:SF1 6 635 5.2E-93 T 23-04-2016 RD1_RS07200 e779301b1a2eff430e41342fda47daec 635 SMART SM00327 442 625 5.8E-13 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS07200 e779301b1a2eff430e41342fda47daec 635 PANTHER PTHR41248 6 635 5.2E-93 T 23-04-2016 RD1_RS08850 c39974395c4f6ef8a200cbfceb7c8d14 74 Pfam PF11003 Protein of unknown function (DUF2842) 8 66 3.3E-19 T 23-04-2016 IPR021265 Protein of unknown function DUF2842 RD1_RS13655 e0c92053dac2e6cff639d87dae83e3b0 137 Pfam PF06073 Bacterial protein of unknown function (DUF934) 33 131 2.4E-22 T 23-04-2016 IPR008318 Uncharacterised conserved protein UCP030820 RD1_RS10225 87e1d9c30c2db93419685fc1b3a9c2f1 402 PANTHER PTHR18964 68 384 4.8E-24 T 23-04-2016 RD1_RS10225 87e1d9c30c2db93419685fc1b3a9c2f1 402 PANTHER PTHR18964:SF112 68 384 4.8E-24 T 23-04-2016 RD1_RS10225 87e1d9c30c2db93419685fc1b3a9c2f1 402 Pfam PF00480 ROK family 94 381 7.8E-21 T 23-04-2016 IPR000600 ROK family RD1_RS10225 87e1d9c30c2db93419685fc1b3a9c2f1 402 Pfam PF13412 Winged helix-turn-helix DNA-binding 22 67 2.0E-10 T 23-04-2016 RD1_RS10225 87e1d9c30c2db93419685fc1b3a9c2f1 402 SUPERFAMILY SSF46785 20 86 1.95E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS10225 87e1d9c30c2db93419685fc1b3a9c2f1 402 SUPERFAMILY SSF53067 92 384 5.86E-33 T 23-04-2016 RD1_RS10225 87e1d9c30c2db93419685fc1b3a9c2f1 402 Gene3D G3DSA:3.30.420.40 88 231 5.2E-22 T 23-04-2016 RD1_RS10225 87e1d9c30c2db93419685fc1b3a9c2f1 402 Gene3D G3DSA:3.30.420.40 232 355 1.9E-18 T 23-04-2016 RD1_RS10225 87e1d9c30c2db93419685fc1b3a9c2f1 402 Gene3D G3DSA:1.10.10.10 19 87 4.2E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS18680 687f636ec27fb9e0075db017b0238970 149 PANTHER PTHR31964:SF42 1 143 4.0E-23 T 23-04-2016 RD1_RS18680 687f636ec27fb9e0075db017b0238970 149 SUPERFAMILY SSF52402 2 149 5.86E-32 T 23-04-2016 RD1_RS18680 687f636ec27fb9e0075db017b0238970 149 PANTHER PTHR31964 1 143 4.0E-23 T 23-04-2016 RD1_RS18680 687f636ec27fb9e0075db017b0238970 149 Pfam PF00582 Universal stress protein family 1 149 1.7E-27 T 23-04-2016 IPR006016 UspA GO:0006950 RD1_RS18680 687f636ec27fb9e0075db017b0238970 149 PRINTS PR01438 Universal stress protein signature 127 149 2.0E-12 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS18680 687f636ec27fb9e0075db017b0238970 149 PRINTS PR01438 Universal stress protein signature 109 121 2.0E-12 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS18680 687f636ec27fb9e0075db017b0238970 149 PRINTS PR01438 Universal stress protein signature 2 20 2.0E-12 T 23-04-2016 IPR006015 Universal stress protein A RD1_RS18680 687f636ec27fb9e0075db017b0238970 149 Gene3D G3DSA:3.40.50.620 1 149 4.2E-34 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS05280 6c832f272fa71fb4c1cdf9f03cdb54b5 278 SUPERFAMILY SSF53448 3 215 8.44E-13 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS11155 a56092f127866060d5ae6a2d202b5b99 343 Gene3D G3DSA:3.40.190.10 149 287 1.6E-25 T 23-04-2016 RD1_RS11155 a56092f127866060d5ae6a2d202b5b99 343 PANTHER PTHR30006:SF7 6 342 1.4E-51 T 23-04-2016 RD1_RS11155 a56092f127866060d5ae6a2d202b5b99 343 PANTHER PTHR30006 6 342 1.4E-51 T 23-04-2016 RD1_RS11155 a56092f127866060d5ae6a2d202b5b99 343 Pfam PF13416 Bacterial extracellular solute-binding protein 56 306 4.0E-18 T 23-04-2016 RD1_RS11155 a56092f127866060d5ae6a2d202b5b99 343 SUPERFAMILY SSF53850 41 341 5.93E-46 T 23-04-2016 RD1_RS11155 a56092f127866060d5ae6a2d202b5b99 343 Gene3D G3DSA:3.40.190.10 55 148 1.7E-9 T 23-04-2016 RD1_RS02835 05b1b8ebfd4993491c73670daab69076 438 SUPERFAMILY SSF82861 180 264 8.89E-12 T 23-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RD1_RS02835 05b1b8ebfd4993491c73670daab69076 438 Pfam PF00924 Mechanosensitive ion channel 223 424 4.3E-39 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RD1_RS02835 05b1b8ebfd4993491c73670daab69076 438 Gene3D G3DSA:2.30.30.60 282 330 8.6E-12 T 23-04-2016 RD1_RS02835 05b1b8ebfd4993491c73670daab69076 438 SUPERFAMILY SSF82689 333 434 2.62E-24 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RD1_RS02835 05b1b8ebfd4993491c73670daab69076 438 Gene3D G3DSA:3.30.70.100 335 422 2.0E-14 T 23-04-2016 RD1_RS02835 05b1b8ebfd4993491c73670daab69076 438 PANTHER PTHR30347 10 433 2.0E-61 T 23-04-2016 RD1_RS02835 05b1b8ebfd4993491c73670daab69076 438 SUPERFAMILY SSF50182 266 331 6.87E-14 T 23-04-2016 IPR010920 LSM domain RD1_RS04785 6e4eee208b63259affd019774ab4e687 232 Pfam PF08511 COQ9 112 187 1.2E-31 T 23-04-2016 IPR013718 COQ9 UniPathway: UPA00232 RD1_RS04785 6e4eee208b63259affd019774ab4e687 232 PANTHER PTHR21427 4 194 6.0E-34 T 23-04-2016 RD1_RS04785 6e4eee208b63259affd019774ab4e687 232 TIGRFAM TIGR02396 diverge_rpsU: rpsU-divergently transcribed protein 9 191 3.6E-57 T 23-04-2016 IPR012762 Ubiquinone biosynthesis protein COQ9 GO:0006744 UniPathway: UPA00232 RD1_RS09640 851a21e826ff5f3a6ee6665f19a3e6c3 410 Gene3D G3DSA:1.20.1250.20 211 394 1.8E-14 T 23-04-2016 RD1_RS09640 851a21e826ff5f3a6ee6665f19a3e6c3 410 Gene3D G3DSA:1.20.1250.20 17 198 1.7E-11 T 23-04-2016 RD1_RS09640 851a21e826ff5f3a6ee6665f19a3e6c3 410 SUPERFAMILY SSF103473 17 394 5.89E-34 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 PRINTS PR01166 Cytochrome c oxidase subunit II signature 196 217 2.9E-41 T 23-04-2016 RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 PRINTS PR01166 Cytochrome c oxidase subunit II signature 220 240 2.9E-41 T 23-04-2016 RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 PRINTS PR01166 Cytochrome c oxidase subunit II signature 103 123 2.9E-41 T 23-04-2016 RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 PRINTS PR01166 Cytochrome c oxidase subunit II signature 258 275 2.9E-41 T 23-04-2016 RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 PRINTS PR01166 Cytochrome c oxidase subunit II signature 125 144 2.9E-41 T 23-04-2016 RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 PRINTS PR01166 Cytochrome c oxidase subunit II signature 91 103 2.9E-41 T 23-04-2016 RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 PRINTS PR01166 Cytochrome c oxidase subunit II signature 240 257 2.9E-41 T 23-04-2016 RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 42 285 1.6E-55 T 23-04-2016 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 PANTHER PTHR22888 36 164 4.3E-80 T 23-04-2016 RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 PANTHER PTHR22888 201 291 4.3E-80 T 23-04-2016 RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 Gene3D G3DSA:1.10.287.90 35 120 4.9E-24 T 23-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 221 269 - T 23-04-2016 IPR001505 Copper centre Cu(A) GO:0005507 RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 188 276 5.1E-35 T 23-04-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 129 161 1.3E-6 T 23-04-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 32 117 1.3E-20 T 23-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 Gene3D G3DSA:2.60.40.420 198 290 2.5E-52 T 23-04-2016 IPR008972 Cupredoxin RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 Gene3D G3DSA:2.60.40.420 121 148 2.5E-52 T 23-04-2016 IPR008972 Cupredoxin RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 SUPERFAMILY SSF49503 194 290 3.76E-52 T 23-04-2016 IPR008972 Cupredoxin RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 SUPERFAMILY SSF49503 125 156 3.76E-52 T 23-04-2016 IPR008972 Cupredoxin RD1_RS09860 36b46afb9cc65988547be903ee4bfd8f 304 SUPERFAMILY SSF81464 27 124 5.07E-24 T 23-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RD1_RS02825 02810b3c6b21a1d36465af680778f37c 214 TIGRFAM TIGR03370 VPLPA-CTERM: VPLPA-CTERM protein sorting domain 188 212 6.2E-12 T 23-04-2016 IPR022472 VPLPA-CTERM protein sorting domain RD1_RS09955 0cf962cb852c098220ce2dedca6e92e7 153 Gene3D G3DSA:3.90.79.10 18 146 9.4E-16 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS09955 0cf962cb852c098220ce2dedca6e92e7 153 PANTHER PTHR12629 22 144 1.2E-24 T 23-04-2016 RD1_RS09955 0cf962cb852c098220ce2dedca6e92e7 153 Pfam PF00293 NUDIX domain 21 138 8.9E-9 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RD1_RS09955 0cf962cb852c098220ce2dedca6e92e7 153 PANTHER PTHR12629:SF0 22 144 1.2E-24 T 23-04-2016 RD1_RS09955 0cf962cb852c098220ce2dedca6e92e7 153 SUPERFAMILY SSF55811 21 151 2.38E-18 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS16035 ef43de3c1db854d8715848085b656a4b 350 PANTHER PTHR34184 21 347 4.0E-35 T 23-04-2016 RD1_RS16035 ef43de3c1db854d8715848085b656a4b 350 Pfam PF03773 Predicted permease 50 345 2.7E-34 T 23-04-2016 IPR005524 Predicted permease DUF318 RD1_RS07630 597ff74f1d567b4b684ee8d5754513e5 187 PIRSF PIRSF036773 1 187 4.9E-78 T 23-04-2016 RD1_RS07630 597ff74f1d567b4b684ee8d5754513e5 187 Pfam PF08712 Scaffold protein Nfu/NifU N terminal 3 89 1.8E-33 T 23-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RD1_RS07630 597ff74f1d567b4b684ee8d5754513e5 187 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 121 185 2.0E-32 T 23-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RD1_RS07630 597ff74f1d567b4b684ee8d5754513e5 187 PANTHER PTHR11178:SF1 1 185 9.7E-96 T 23-04-2016 IPR017065 NFU1 iron-sulfur cluster scaffold homologue GO:0016226 RD1_RS07630 597ff74f1d567b4b684ee8d5754513e5 187 Pfam PF01106 NifU-like domain 117 182 1.2E-29 T 23-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RD1_RS07630 597ff74f1d567b4b684ee8d5754513e5 187 Gene3D G3DSA:3.30.1370.70 1 91 5.3E-38 T 23-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RD1_RS07630 597ff74f1d567b4b684ee8d5754513e5 187 SUPERFAMILY SSF110836 1 91 1.31E-32 T 23-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RD1_RS07630 597ff74f1d567b4b684ee8d5754513e5 187 SUPERFAMILY SSF117916 110 185 1.4E-27 T 23-04-2016 RD1_RS07630 597ff74f1d567b4b684ee8d5754513e5 187 PANTHER PTHR11178 1 185 9.7E-96 T 23-04-2016 RD1_RS07630 597ff74f1d567b4b684ee8d5754513e5 187 SMART SM00932 3 89 4.8E-54 T 23-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RD1_RS13480 002a0c2f27adbf21b315f6481da2d62d 422 SUPERFAMILY SSF52151 130 328 4.71E-22 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RD1_RS13480 002a0c2f27adbf21b315f6481da2d62d 422 SUPERFAMILY SSF52151 2 75 4.71E-22 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RD1_RS14690 401f3374c19129253e49cc173dcbdba7 204 PANTHER PTHR30086 4 204 2.2E-38 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS14690 401f3374c19129253e49cc173dcbdba7 204 Pfam PF01810 LysE type translocator 18 203 9.8E-37 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS15665 9d60bd8463421cea2b30b8a14262e950 108 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 7 103 1.8E-21 T 23-04-2016 IPR008407 Branched-chain amino acid transport, AzlD RD1_RS11055 5b9c0c0cb33af38d11c9e951fb6bf023 247 Pfam PF01177 Asp/Glu/Hydantoin racemase 6 204 7.6E-8 T 23-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RD1_RS11055 5b9c0c0cb33af38d11c9e951fb6bf023 247 PANTHER PTHR28047:SF1 1 230 1.6E-50 T 23-04-2016 RD1_RS11055 5b9c0c0cb33af38d11c9e951fb6bf023 247 PANTHER PTHR28047 1 230 1.6E-50 T 23-04-2016 RD1_RS07300 b432471a3e0401f9913154f117a0694e 321 Pfam PF00535 Glycosyl transferase family 2 1 137 5.3E-30 T 23-04-2016 IPR001173 Glycosyltransferase 2-like RD1_RS07300 b432471a3e0401f9913154f117a0694e 321 PANTHER PTHR22916 1 316 1.1E-47 T 23-04-2016 RD1_RS07300 b432471a3e0401f9913154f117a0694e 321 SUPERFAMILY SSF53448 1 228 9.28E-49 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS07300 b432471a3e0401f9913154f117a0694e 321 Gene3D G3DSA:3.90.550.10 1 233 2.1E-52 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS02255 539c04182d47bd5fc1e20826079806f3 366 PANTHER PTHR32196 25 183 2.4E-49 T 23-04-2016 RD1_RS02255 539c04182d47bd5fc1e20826079806f3 366 PANTHER PTHR32196 208 361 2.4E-49 T 23-04-2016 RD1_RS02255 539c04182d47bd5fc1e20826079806f3 366 Pfam PF02653 Branched-chain amino acid transport system / permease component 53 352 6.5E-60 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS02255 539c04182d47bd5fc1e20826079806f3 366 PANTHER PTHR32196:SF21 25 183 2.4E-49 T 23-04-2016 RD1_RS02255 539c04182d47bd5fc1e20826079806f3 366 PANTHER PTHR32196:SF21 208 361 2.4E-49 T 23-04-2016 RD1_RS01500 67800cf627a8f3b3bfc47e9883f2c078 151 PANTHER PTHR35146 1 151 2.3E-35 T 23-04-2016 RD1_RS01500 67800cf627a8f3b3bfc47e9883f2c078 151 PANTHER PTHR35146:SF1 1 151 2.3E-35 T 23-04-2016 RD1_RS01500 67800cf627a8f3b3bfc47e9883f2c078 151 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 17 145 2.1E-41 T 23-04-2016 IPR003791 Protein of unknown function UPF0178 RD1_RS01500 67800cf627a8f3b3bfc47e9883f2c078 151 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 2 147 28.524 T 23-04-2016 IPR003791 Protein of unknown function UPF0178 RD1_RS09030 b91da85b905c96b12eb7d0f25f3cb6d6 293 PANTHER PTHR32322 1 293 1.4E-33 T 23-04-2016 RD1_RS09030 b91da85b905c96b12eb7d0f25f3cb6d6 293 SUPERFAMILY SSF103481 34 136 2.35E-10 T 23-04-2016 RD1_RS09030 b91da85b905c96b12eb7d0f25f3cb6d6 293 Pfam PF00892 EamA-like transporter family 2 134 5.4E-18 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS09030 b91da85b905c96b12eb7d0f25f3cb6d6 293 Pfam PF00892 EamA-like transporter family 150 280 9.5E-13 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS09030 b91da85b905c96b12eb7d0f25f3cb6d6 293 SUPERFAMILY SSF103481 184 285 5.49E-11 T 23-04-2016 RD1_RS12090 c90c3809b4e0d8e2638b0df19f5d64b5 438 PANTHER PTHR30482 156 390 3.2E-53 T 23-04-2016 RD1_RS12090 c90c3809b4e0d8e2638b0df19f5d64b5 438 PANTHER PTHR30482 413 438 3.2E-53 T 23-04-2016 RD1_RS12090 c90c3809b4e0d8e2638b0df19f5d64b5 438 PANTHER PTHR30482 1 75 3.2E-53 T 23-04-2016 RD1_RS12090 c90c3809b4e0d8e2638b0df19f5d64b5 438 Pfam PF02653 Branched-chain amino acid transport system / permease component 157 427 1.3E-29 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS12090 c90c3809b4e0d8e2638b0df19f5d64b5 438 PANTHER PTHR30482:SF10 156 390 3.2E-53 T 23-04-2016 RD1_RS12090 c90c3809b4e0d8e2638b0df19f5d64b5 438 PANTHER PTHR30482:SF10 413 438 3.2E-53 T 23-04-2016 RD1_RS12090 c90c3809b4e0d8e2638b0df19f5d64b5 438 PANTHER PTHR30482:SF10 1 75 3.2E-53 T 23-04-2016 RD1_RS13930 208eadaaf89b583f6be174cbc60100ff 392 Pfam PF04860 Phage portal protein 55 384 3.5E-85 T 23-04-2016 IPR006944 Bacteriophage/Gene transfer agent portal protein RD1_RS13930 208eadaaf89b583f6be174cbc60100ff 392 TIGRFAM TIGR01537 portal_HK97: phage portal protein, HK97 family 45 387 6.0E-66 T 23-04-2016 IPR006427 Phage portal protein, HK97 RD1_RS12880 9a8454e298b058768ad3bf4d0b7242a6 146 Pfam PF06271 RDD family 19 134 8.6E-13 T 23-04-2016 IPR010432 RDD RD1_RS12645 4605690f76d876649f28077b9a5b0b49 79 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 6 66 7.0E-34 T 23-04-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RD1_RS12645 4605690f76d876649f28077b9a5b0b49 79 Gene3D G3DSA:2.30.30.100 4 76 1.5E-38 T 23-04-2016 RD1_RS12645 4605690f76d876649f28077b9a5b0b49 79 PANTHER PTHR34772 2 77 4.3E-37 T 23-04-2016 RD1_RS12645 4605690f76d876649f28077b9a5b0b49 79 PANTHER PTHR34772:SF1 2 77 4.3E-37 T 23-04-2016 RD1_RS12645 4605690f76d876649f28077b9a5b0b49 79 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 66 29.735 T 23-04-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RD1_RS12645 4605690f76d876649f28077b9a5b0b49 79 SUPERFAMILY SSF50182 7 72 2.25E-26 T 23-04-2016 IPR010920 LSM domain RD1_RS04835 3d53bbb34f087d2779502b3abb113ea4 425 PIRSF PIRSF006066 1 425 5.1E-143 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS04835 3d53bbb34f087d2779502b3abb113ea4 425 PANTHER PTHR33362 1 423 3.5E-137 T 23-04-2016 RD1_RS04835 3d53bbb34f087d2779502b3abb113ea4 425 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 414 1.2E-109 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS04835 3d53bbb34f087d2779502b3abb113ea4 425 PANTHER PTHR33362:SF2 1 423 3.5E-137 T 23-04-2016 RD1_RS04835 3d53bbb34f087d2779502b3abb113ea4 425 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 420 4.8E-123 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS00760 7515fe3c84d78b87cc8d49c7d5c959ef 445 Pfam PF02120 Flagellar hook-length control protein FliK 333 402 7.8E-16 T 23-04-2016 IPR021136 Flagellar hook-length control protein-like, C-terminal RD1_RS11170 8ee74cca0f8545250a551d9a33867cf4 303 PANTHER PTHR10587:SF72 8 296 1.8E-120 T 23-04-2016 RD1_RS11170 8ee74cca0f8545250a551d9a33867cf4 303 SUPERFAMILY SSF88713 3 298 3.06E-79 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RD1_RS11170 8ee74cca0f8545250a551d9a33867cf4 303 Pfam PF01522 Polysaccharide deacetylase 76 183 1.2E-12 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RD1_RS11170 8ee74cca0f8545250a551d9a33867cf4 303 PANTHER PTHR10587 8 296 1.8E-120 T 23-04-2016 RD1_RS11170 8ee74cca0f8545250a551d9a33867cf4 303 Gene3D G3DSA:3.20.20.370 2 299 2.4E-93 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RD1_RS19100 9ce01e19b6c2955cfc4308b7130d6404 163 SUPERFAMILY SSF55729 29 154 7.28E-11 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS19100 9ce01e19b6c2955cfc4308b7130d6404 163 Pfam PF13302 Acetyltransferase (GNAT) domain 29 131 4.2E-6 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS19100 9ce01e19b6c2955cfc4308b7130d6404 163 Gene3D G3DSA:3.40.630.30 29 154 3.0E-9 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS08460 a4dff48761da45fd3ff2c88cbe2a9090 232 PANTHER PTHR34387 4 232 4.2E-48 T 23-04-2016 RD1_RS08460 a4dff48761da45fd3ff2c88cbe2a9090 232 Pfam PF04402 Protein of unknown function (DUF541) 26 225 2.8E-47 T 23-04-2016 IPR007497 Protein of unknown function DUF541 RD1_RS08460 a4dff48761da45fd3ff2c88cbe2a9090 232 PANTHER PTHR34387:SF1 4 232 4.2E-48 T 23-04-2016 RD1_RS04130 7904f968306f15760b6a1c3fd83a35a8 390 Gene3D G3DSA:3.40.50.2300 77 202 6.9E-12 T 23-04-2016 RD1_RS04130 7904f968306f15760b6a1c3fd83a35a8 390 TIGRFAM TIGR03863 PQQ_ABC_bind: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system 36 387 1.3E-148 T 23-04-2016 IPR022478 ABC transporter, substrate-binding protein, PQQ-dependent alcohol dehydrogenase system RD1_RS04130 7904f968306f15760b6a1c3fd83a35a8 390 Pfam PF13458 Periplasmic binding protein 76 199 1.3E-10 T 23-04-2016 IPR028081 Leucine-binding protein domain RD1_RS04130 7904f968306f15760b6a1c3fd83a35a8 390 SUPERFAMILY SSF53822 48 353 2.89E-29 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS04870 5a04430c9cc8e639ef4fc45204f348f4 324 SUPERFAMILY SSF53850 59 309 1.16E-36 T 23-04-2016 RD1_RS04870 5a04430c9cc8e639ef4fc45204f348f4 324 Gene3D G3DSA:3.40.190.10 148 270 1.8E-8 T 23-04-2016 RD1_RS04870 5a04430c9cc8e639ef4fc45204f348f4 324 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 63 282 4.4E-53 T 23-04-2016 RD1_RS04870 5a04430c9cc8e639ef4fc45204f348f4 324 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 8 279 1.6E-66 T 23-04-2016 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 RD1_RS04870 5a04430c9cc8e639ef4fc45204f348f4 324 PANTHER PTHR35841 61 323 1.2E-16 T 23-04-2016 RD1_RS20415 88d50b9af1f740332aaa604c256d4994 81 Pfam PF07784 Protein of unknown function (DUF1622) 10 66 1.2E-19 T 23-04-2016 IPR012427 Protein of unknown function DUF1622 RD1_RS10910 bade6b98eb6ecf5b41dbe126ca60ae53 245 SUPERFAMILY SSF51395 148 228 6.59E-5 T 23-04-2016 RD1_RS10910 bade6b98eb6ecf5b41dbe126ca60ae53 245 Pfam PF03437 BtpA family 159 243 8.5E-8 T 23-04-2016 IPR005137 Photosystem I BtpA, assembly RD1_RS13185 e7ae501e414696dccbea73509a69f37d 282 PANTHER PTHR32243 4 282 5.5E-75 T 23-04-2016 RD1_RS13185 e7ae501e414696dccbea73509a69f37d 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 268 1.6E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13185 e7ae501e414696dccbea73509a69f37d 282 SUPERFAMILY SSF161098 9 282 3.18E-61 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13185 e7ae501e414696dccbea73509a69f37d 282 Gene3D G3DSA:1.10.3720.10 9 270 1.1E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS10400 7debdfbbea10ce8612e11e838e83376a 198 Gene3D G3DSA:3.40.50.170 3 190 5.1E-64 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RD1_RS10400 7debdfbbea10ce8612e11e838e83376a 198 Pfam PF00551 Formyl transferase 3 183 6.0E-56 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RD1_RS10400 7debdfbbea10ce8612e11e838e83376a 198 PANTHER PTHR10520 2 187 7.9E-78 T 23-04-2016 RD1_RS10400 7debdfbbea10ce8612e11e838e83376a 198 SUPERFAMILY SSF53328 3 192 1.96E-60 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RD1_RS10400 7debdfbbea10ce8612e11e838e83376a 198 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 4 189 29.352 T 23-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 RD1_RS10400 7debdfbbea10ce8612e11e838e83376a 198 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 3 189 4.9E-64 T 23-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 RD1_RS00530 80303dd177fb1ed2f0c6e5b33a3e8cb6 240 SUPERFAMILY SSF56925 62 140 2.88E-9 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RD1_RS00530 80303dd177fb1ed2f0c6e5b33a3e8cb6 240 SUPERFAMILY SSF56925 183 240 2.88E-9 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RD1_RS00530 80303dd177fb1ed2f0c6e5b33a3e8cb6 240 Gene3D G3DSA:2.40.160.20 187 240 1.9E-7 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RD1_RS18080 3bdb391b9996d1deeaa58a76e51cd7c8 385 Gene3D G3DSA:1.10.3720.10 14 53 1.1E-45 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18080 3bdb391b9996d1deeaa58a76e51cd7c8 385 Gene3D G3DSA:1.10.3720.10 145 372 1.1E-45 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18080 3bdb391b9996d1deeaa58a76e51cd7c8 385 PANTHER PTHR32243:SF18 147 385 1.4E-64 T 23-04-2016 RD1_RS18080 3bdb391b9996d1deeaa58a76e51cd7c8 385 PANTHER PTHR32243:SF18 4 57 1.4E-64 T 23-04-2016 RD1_RS18080 3bdb391b9996d1deeaa58a76e51cd7c8 385 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 183 378 4.0E-20 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18080 3bdb391b9996d1deeaa58a76e51cd7c8 385 SUPERFAMILY SSF161098 107 385 7.72E-54 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS18080 3bdb391b9996d1deeaa58a76e51cd7c8 385 PANTHER PTHR32243 147 385 1.4E-64 T 23-04-2016 RD1_RS18080 3bdb391b9996d1deeaa58a76e51cd7c8 385 PANTHER PTHR32243 4 57 1.4E-64 T 23-04-2016 RD1_RS14800 9566f219e7d1e7ddd388a21595101294 196 Pfam PF11351 Holin of 3TMs, for gene-transfer release 15 123 4.0E-32 T 23-04-2016 IPR021497 Holin of 3TMs, for gene-transfer release RD1_RS19400 b4da5f3e3ae0a88605c2ea510130cc61 152 Pfam PF01152 Bacterial-like globin 6 122 3.2E-21 T 23-04-2016 IPR001486 Truncated hemoglobin GO:0019825 RD1_RS19400 b4da5f3e3ae0a88605c2ea510130cc61 152 Gene3D G3DSA:1.10.490.10 5 125 8.6E-31 T 23-04-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 RD1_RS19400 b4da5f3e3ae0a88605c2ea510130cc61 152 SUPERFAMILY SSF46458 5 125 4.8E-26 T 23-04-2016 IPR009050 Globin-like RD1_RS08430 002fb08ab94a30b32d3401f0f543e855 253 Pfam PF02654 Cobalamin-5-phosphate synthase 16 246 5.9E-48 T 23-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 RD1_RS08430 002fb08ab94a30b32d3401f0f543e855 253 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 14 247 5.4E-33 T 23-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 RD1_RS08430 002fb08ab94a30b32d3401f0f543e855 253 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 253 45.709 T 23-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 RD1_RS08430 002fb08ab94a30b32d3401f0f543e855 253 PANTHER PTHR34148:SF1 3 250 1.6E-47 T 23-04-2016 RD1_RS08430 002fb08ab94a30b32d3401f0f543e855 253 PANTHER PTHR34148 3 250 1.6E-47 T 23-04-2016 RD1_RS02450 0d5838c6df3eff112e6944cdbf1d8085 318 Gene3D G3DSA:3.40.50.1000 153 284 2.0E-13 T 23-04-2016 IPR023214 HAD-like domain RD1_RS02450 0d5838c6df3eff112e6944cdbf1d8085 318 Gene3D G3DSA:3.40.50.1000 55 70 2.0E-13 T 23-04-2016 IPR023214 HAD-like domain RD1_RS02450 0d5838c6df3eff112e6944cdbf1d8085 318 Pfam PF12710 haloacid dehalogenase-like hydrolase 57 257 2.3E-21 T 23-04-2016 RD1_RS02450 0d5838c6df3eff112e6944cdbf1d8085 318 SUPERFAMILY SSF56784 55 304 2.84E-20 T 23-04-2016 IPR023214 HAD-like domain RD1_RS16115 446991d5bfc5438a2de6d24ead08ef76 251 SUPERFAMILY SSF64438 4 250 9.89E-81 T 23-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic RD1_RS16115 446991d5bfc5438a2de6d24ead08ef76 251 PANTHER PTHR30616 16 251 6.6E-74 T 23-04-2016 RD1_RS16115 446991d5bfc5438a2de6d24ead08ef76 251 Gene3D G3DSA:3.60.140.10 7 250 1.3E-84 T 23-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RD1_RS16115 446991d5bfc5438a2de6d24ead08ef76 251 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 37 238 1.8E-53 T 23-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RD1_RS16115 446991d5bfc5438a2de6d24ead08ef76 251 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 20 249 9.2E-69 T 23-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RD1_RS16870 b05cafda7aab402b351eb4543803a740 90 ProSitePatterns PS00195 Glutaredoxin active site. 7 23 - T 23-04-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 RD1_RS16870 b05cafda7aab402b351eb4543803a740 90 PRINTS PR00160 Glutaredoxin signature 5 23 1.0E-12 T 23-04-2016 IPR014025 Glutaredoxin subgroup RD1_RS16870 b05cafda7aab402b351eb4543803a740 90 PRINTS PR00160 Glutaredoxin signature 62 75 1.0E-12 T 23-04-2016 IPR014025 Glutaredoxin subgroup RD1_RS16870 b05cafda7aab402b351eb4543803a740 90 PRINTS PR00160 Glutaredoxin signature 48 61 1.0E-12 T 23-04-2016 IPR014025 Glutaredoxin subgroup RD1_RS16870 b05cafda7aab402b351eb4543803a740 90 SUPERFAMILY SSF52833 4 85 4.09E-24 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS16870 b05cafda7aab402b351eb4543803a740 90 Gene3D G3DSA:3.40.30.10 3 81 8.4E-23 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS16870 b05cafda7aab402b351eb4543803a740 90 PANTHER PTHR10168 5 84 2.4E-20 T 23-04-2016 RD1_RS16870 b05cafda7aab402b351eb4543803a740 90 Pfam PF00462 Glutaredoxin 5 65 1.0E-17 T 23-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RD1_RS16870 b05cafda7aab402b351eb4543803a740 90 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 5 84 3.7E-31 T 23-04-2016 IPR011900 Glutaredoxin, GrxC GO:0045454 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 PANTHER PTHR30587 1 242 2.2E-83 T 23-04-2016 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 164 176 1.6E-18 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 232 242 1.6E-18 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 113 127 1.6E-18 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 101 113 1.6E-18 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 41 50 1.6E-18 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 45 242 9.3E-74 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 PANTHER PTHR30587:SF0 1 242 2.2E-83 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 216 241 3.1E-60 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 82 101 3.1E-60 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 192 213 3.1E-60 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 43 62 3.1E-60 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 171 191 3.1E-60 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 62 82 3.1E-60 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 171 186 - T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RD1_RS01235 7320a52acbc0eaa21e1c4f808f78bb38 243 Pfam PF00813 FliP family 45 238 8.4E-71 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RD1_RS02195 6cd2860f6009dca4dfb98a1893d5cf0b 492 Gene3D G3DSA:1.25.40.10 133 367 1.4E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS02195 6cd2860f6009dca4dfb98a1893d5cf0b 492 Pfam PF07219 HemY protein N-terminus 30 143 6.0E-27 T 23-04-2016 IPR010817 HemY, N-terminal UniPathway: UPA00252 RD1_RS02195 6cd2860f6009dca4dfb98a1893d5cf0b 492 SUPERFAMILY SSF48452 134 221 1.69E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS02195 6cd2860f6009dca4dfb98a1893d5cf0b 492 SUPERFAMILY SSF48452 264 366 1.69E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS02195 6cd2860f6009dca4dfb98a1893d5cf0b 492 PIRSF PIRSF031802 5 492 1.3E-159 T 23-04-2016 IPR016982 Uncharacterised conserved protein UCP031802 RD1_RS02195 6cd2860f6009dca4dfb98a1893d5cf0b 492 Pfam PF14559 Tetratricopeptide repeat 329 381 1.1E-5 T 23-04-2016 RD1_RS10035 9689a924a2506b814c7268f8c4aa16dd 343 SUPERFAMILY SSF53850 141 218 1.09E-7 T 23-04-2016 RD1_RS10035 9689a924a2506b814c7268f8c4aa16dd 343 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 51 314 1.9E-23 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS10035 9689a924a2506b814c7268f8c4aa16dd 343 Gene3D G3DSA:3.40.190.10 157 212 1.2E-4 T 23-04-2016 RD1_RS10035 9689a924a2506b814c7268f8c4aa16dd 343 PANTHER PTHR33376 1 335 2.9E-34 T 23-04-2016 RD1_RS10035 9689a924a2506b814c7268f8c4aa16dd 343 PANTHER PTHR33376:SF5 1 335 2.9E-34 T 23-04-2016 RD1_RS11335 e5ac852f42b371fe2d787220f41d0673 476 Pfam PF02386 Cation transport protein 296 463 2.9E-20 T 23-04-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 RD1_RS11335 e5ac852f42b371fe2d787220f41d0673 476 Pfam PF02386 Cation transport protein 100 248 1.2E-11 T 23-04-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 RD1_RS11335 e5ac852f42b371fe2d787220f41d0673 476 PANTHER PTHR32024 6 468 1.2E-56 T 23-04-2016 RD1_RS06540 42a45b8fea6cfdb83e8f5fdb6bc37fdc 188 TIGRFAM TIGR03370 VPLPA-CTERM: VPLPA-CTERM protein sorting domain 162 186 1.1E-11 T 23-04-2016 IPR022472 VPLPA-CTERM protein sorting domain RD1_RS04630 17970f01d0e868a6e5d37f36398928c1 152 PANTHER PTHR13078 1 142 1.5E-27 T 23-04-2016 RD1_RS04630 17970f01d0e868a6e5d37f36398928c1 152 SUPERFAMILY SSF54637 11 148 2.29E-33 T 23-04-2016 IPR029069 HotDog domain RD1_RS04630 17970f01d0e868a6e5d37f36398928c1 152 Gene3D G3DSA:3.10.129.10 14 149 2.5E-33 T 23-04-2016 IPR029069 HotDog domain RD1_RS04630 17970f01d0e868a6e5d37f36398928c1 152 Pfam PF01575 MaoC like domain 13 116 2.8E-26 T 23-04-2016 IPR002539 MaoC-like domain RD1_RS02600 1661a7a8c3b86a535d086f8c6df827d0 148 Gene3D G3DSA:3.40.50.960 2 143 6.5E-40 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS02600 1661a7a8c3b86a535d086f8c6df827d0 148 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 1 142 20.066 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS02600 1661a7a8c3b86a535d086f8c6df827d0 148 PANTHER PTHR21058 5 148 2.5E-27 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS02600 1661a7a8c3b86a535d086f8c6df827d0 148 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 4 138 3.8E-32 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS02600 1661a7a8c3b86a535d086f8c6df827d0 148 SUPERFAMILY SSF52121 2 142 2.62E-40 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RD1_RS08945 64f9e4f677346595bf3d0ff7879a6cf4 204 Pfam PF04279 Intracellular septation protein A 11 196 2.4E-46 T 23-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RD1_RS08945 64f9e4f677346595bf3d0ff7879a6cf4 204 PANTHER PTHR36917 8 203 6.8E-30 T 23-04-2016 RD1_RS08945 64f9e4f677346595bf3d0ff7879a6cf4 204 PANTHER PTHR36917:SF1 8 203 6.8E-30 T 23-04-2016 RD1_RS08945 64f9e4f677346595bf3d0ff7879a6cf4 204 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 11 198 15.258 T 23-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RD1_RS12375 55721d41f1ccc4f0495f547dedefdd37 193 Pfam PF04893 Yip1 domain 11 172 2.5E-8 T 23-04-2016 IPR006977 Yip1 domain GO:0016020 RD1_RS17150 69ddff4a1f8e5aee5f72a101e92bc9fe 543 PANTHER PTHR30061 3 54 9.3E-31 T 23-04-2016 RD1_RS17150 69ddff4a1f8e5aee5f72a101e92bc9fe 543 PANTHER PTHR30061 79 530 9.3E-31 T 23-04-2016 RD1_RS17150 69ddff4a1f8e5aee5f72a101e92bc9fe 543 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 14 38 8.3E-6 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RD1_RS17150 69ddff4a1f8e5aee5f72a101e92bc9fe 543 Gene3D G3DSA:3.40.190.10 104 220 7.2E-10 T 23-04-2016 RD1_RS17150 69ddff4a1f8e5aee5f72a101e92bc9fe 543 Gene3D G3DSA:3.40.190.10 221 448 1.3E-23 T 23-04-2016 RD1_RS17150 69ddff4a1f8e5aee5f72a101e92bc9fe 543 SUPERFAMILY SSF53850 87 524 2.24E-40 T 23-04-2016 RD1_RS08595 b3ef99e1d1f466acd1d6d061497571fc 507 PIRSF PIRSF002741 16 507 1.5E-73 T 23-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RD1_RS08595 b3ef99e1d1f466acd1d6d061497571fc 507 Gene3D G3DSA:3.40.190.10 132 271 2.7E-27 T 23-04-2016 RD1_RS08595 b3ef99e1d1f466acd1d6d061497571fc 507 SUPERFAMILY SSF53850 29 500 9.91E-108 T 23-04-2016 RD1_RS08595 b3ef99e1d1f466acd1d6d061497571fc 507 PANTHER PTHR30290 1 498 2.0E-100 T 23-04-2016 RD1_RS08595 b3ef99e1d1f466acd1d6d061497571fc 507 Gene3D G3DSA:3.10.105.10 272 475 3.2E-50 T 23-04-2016 RD1_RS08595 b3ef99e1d1f466acd1d6d061497571fc 507 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 70 419 7.1E-69 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain RD1_RS00185 4918443ba7dd28a44e582e576f013dc9 262 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 6 253 3.6E-21 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS00185 4918443ba7dd28a44e582e576f013dc9 262 PANTHER PTHR22748:SF7 5 262 2.8E-73 T 23-04-2016 RD1_RS00185 4918443ba7dd28a44e582e576f013dc9 262 PANTHER PTHR22748 5 262 2.8E-73 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RD1_RS00185 4918443ba7dd28a44e582e576f013dc9 262 Gene3D G3DSA:3.60.10.10 3 261 4.9E-62 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS00185 4918443ba7dd28a44e582e576f013dc9 262 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 29 38 - T 23-04-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 RD1_RS00185 4918443ba7dd28a44e582e576f013dc9 262 SUPERFAMILY SSF56219 3 262 6.41E-64 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS00185 4918443ba7dd28a44e582e576f013dc9 262 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 5 261 1.2E-47 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RD1_RS05365 d1caf7db22c92dac1d51cda7fc10fb2a 178 Gene3D G3DSA:1.10.287.110 10 59 2.2E-9 T 23-04-2016 IPR001623 DnaJ domain RD1_RS05365 d1caf7db22c92dac1d51cda7fc10fb2a 178 SUPERFAMILY SSF46565 10 60 1.83E-10 T 23-04-2016 IPR001623 DnaJ domain RD1_RS05365 d1caf7db22c92dac1d51cda7fc10fb2a 178 Pfam PF00226 DnaJ domain 11 59 2.0E-8 T 23-04-2016 IPR001623 DnaJ domain RD1_RS13285 2fa9cc62cda4bc9109af6e86fa3afdbf 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 3.0E-8 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RD1_RS13285 2fa9cc62cda4bc9109af6e86fa3afdbf 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 3.0E-8 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RD1_RS13285 2fa9cc62cda4bc9109af6e86fa3afdbf 253 PANTHER PTHR30363:SF1 1 251 1.5E-93 T 23-04-2016 RD1_RS13285 2fa9cc62cda4bc9109af6e86fa3afdbf 253 SUPERFAMILY SSF46785 6 71 7.97E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS13285 2fa9cc62cda4bc9109af6e86fa3afdbf 253 SMART SM00420 6 58 7.8E-19 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RD1_RS13285 2fa9cc62cda4bc9109af6e86fa3afdbf 253 Gene3D G3DSA:3.30.750.70 76 158 1.8E-13 T 23-04-2016 RD1_RS13285 2fa9cc62cda4bc9109af6e86fa3afdbf 253 Gene3D G3DSA:1.10.10.10 1 59 5.4E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS13285 2fa9cc62cda4bc9109af6e86fa3afdbf 253 SMART SM01134 72 233 8.6E-68 T 23-04-2016 RD1_RS13285 2fa9cc62cda4bc9109af6e86fa3afdbf 253 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 2.9E-17 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RD1_RS13285 2fa9cc62cda4bc9109af6e86fa3afdbf 253 PANTHER PTHR30363 1 251 1.5E-93 T 23-04-2016 RD1_RS13285 2fa9cc62cda4bc9109af6e86fa3afdbf 253 SUPERFAMILY SSF100950 73 232 5.58E-28 T 23-04-2016 RD1_RS13285 2fa9cc62cda4bc9109af6e86fa3afdbf 253 Pfam PF00455 DeoR C terminal sensor domain 74 231 1.1E-49 T 23-04-2016 IPR014036 DeoR C-terminal sensor domain RD1_RS11245 784a60d47885c1e1712e41d808d8ab3a 185 Pfam PF01814 Hemerythrin HHE cation binding domain 25 157 1.0E-14 T 23-04-2016 IPR012312 Haemerythrin-like RD1_RS11245 784a60d47885c1e1712e41d808d8ab3a 185 Gene3D G3DSA:1.20.120.520 21 178 2.3E-23 T 23-04-2016 RD1_RS09945 189effe426862ba423ef723473f3be51 163 SUPERFAMILY SSF55729 6 132 5.75E-20 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS09945 189effe426862ba423ef723473f3be51 163 Gene3D G3DSA:3.40.630.30 3 130 1.5E-15 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS09945 189effe426862ba423ef723473f3be51 163 Pfam PF13527 Acetyltransferase (GNAT) domain 8 124 6.4E-7 T 23-04-2016 RD1_RS04585 aede4dacb5864072ce1f14fc2a849acd 229 PANTHER PTHR30399 16 226 4.7E-51 T 23-04-2016 RD1_RS04585 aede4dacb5864072ce1f14fc2a849acd 229 Pfam PF01863 Protein of unknown function DUF45 23 218 2.2E-47 T 23-04-2016 IPR002725 Protein of unknown function DUF45 RD1_RS04585 aede4dacb5864072ce1f14fc2a849acd 229 PANTHER PTHR30399:SF3 16 226 4.7E-51 T 23-04-2016 RD1_RS10720 40aa28c48e80eeda074554b74cb50a0d 112 Pfam PF11750 Protein of unknown function (DUF3307) 2 103 1.2E-8 T 23-04-2016 IPR021737 Bacteriophage phiKZ, Orf197 RD1_RS01250 0941548e9c3788e8cbc94267f5c2b08d 540 PRINTS PR01009 Flagellar M-ring protein signature 248 266 4.3E-21 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RD1_RS01250 0941548e9c3788e8cbc94267f5c2b08d 540 PRINTS PR01009 Flagellar M-ring protein signature 185 203 4.3E-21 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RD1_RS01250 0941548e9c3788e8cbc94267f5c2b08d 540 PRINTS PR01009 Flagellar M-ring protein signature 144 158 4.3E-21 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RD1_RS01250 0941548e9c3788e8cbc94267f5c2b08d 540 PRINTS PR01009 Flagellar M-ring protein signature 320 344 4.3E-21 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RD1_RS01250 0941548e9c3788e8cbc94267f5c2b08d 540 PRINTS PR01009 Flagellar M-ring protein signature 112 130 4.3E-21 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RD1_RS01250 0941548e9c3788e8cbc94267f5c2b08d 540 PANTHER PTHR30046:SF0 1 538 6.6E-91 T 23-04-2016 RD1_RS01250 0941548e9c3788e8cbc94267f5c2b08d 540 PIRSF PIRSF004862 1 538 6.4E-116 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RD1_RS01250 0941548e9c3788e8cbc94267f5c2b08d 540 Pfam PF08345 Flagellar M-ring protein C-terminal 235 394 2.0E-33 T 23-04-2016 IPR013556 Flagellar M-ring C-terminal RD1_RS01250 0941548e9c3788e8cbc94267f5c2b08d 540 PANTHER PTHR30046 1 538 6.6E-91 T 23-04-2016 RD1_RS01250 0941548e9c3788e8cbc94267f5c2b08d 540 Pfam PF01514 Secretory protein of YscJ/FliF family 24 208 5.7E-47 T 23-04-2016 IPR006182 Secretory protein YscJ/FliF RD1_RS01250 0941548e9c3788e8cbc94267f5c2b08d 540 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 18 446 8.7E-50 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RD1_RS00205 64e584ff9726179039989a01e8bfa2cc 218 SUPERFAMILY SSF51419 4 213 1.11E-66 T 23-04-2016 IPR029066 PLP-binding barrel RD1_RS00205 64e584ff9726179039989a01e8bfa2cc 218 Pfam PF01168 Alanine racemase, N-terminal domain 3 215 3.6E-19 T 23-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RD1_RS00205 64e584ff9726179039989a01e8bfa2cc 218 Gene3D G3DSA:3.20.20.10 4 216 1.5E-70 T 23-04-2016 IPR029066 PLP-binding barrel RD1_RS00205 64e584ff9726179039989a01e8bfa2cc 218 PANTHER PTHR10146 4 215 1.0E-76 T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 RD1_RS00205 64e584ff9726179039989a01e8bfa2cc 218 PIRSF PIRSF004848 2 218 5.9E-57 T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 RD1_RS00205 64e584ff9726179039989a01e8bfa2cc 218 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 4 215 3.0E-48 T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 RD1_RS01420 e7583b12edea46b17976d3f1b2aea490 383 Pfam PF11294 Protein of unknown function (DUF3095) 10 381 4.6E-137 T 23-04-2016 IPR021445 Protein of unknown function DUF3095 RD1_RS15290 a39f69b17bcc3d0bb6cc4e448c59ea54 206 SUPERFAMILY SSF53955 66 177 1.54E-13 T 23-04-2016 IPR023346 Lysozyme-like domain RD1_RS15290 a39f69b17bcc3d0bb6cc4e448c59ea54 206 Gene3D G3DSA:1.10.530.10 97 188 1.1E-9 T 23-04-2016 RD1_RS15290 a39f69b17bcc3d0bb6cc4e448c59ea54 206 Pfam PF01464 Transglycosylase SLT domain 94 158 3.3E-6 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 RD1_RS13795 26ee3f761362bae896e7987bd911d4e8 1119 Pfam PF13116 Protein of unknown function 450 635 3.2E-9 T 23-04-2016 IPR025263 Domain of unknown function DUF3971 RD1_RS13795 26ee3f761362bae896e7987bd911d4e8 1119 Pfam PF13502 AsmA-like C-terminal region 885 1068 2.8E-11 T 23-04-2016 IPR032712 AsmA-like, C-terminal RD1_RS05465 88de01d2f6156c48d54986a1a734f9d0 228 Gene3D G3DSA:1.20.1540.10 14 215 1.1E-22 T 23-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RD1_RS05465 88de01d2f6156c48d54986a1a734f9d0 228 SUPERFAMILY SSF144091 60 216 5.36E-27 T 23-04-2016 RD1_RS05465 88de01d2f6156c48d54986a1a734f9d0 228 SUPERFAMILY SSF144091 9 33 5.36E-27 T 23-04-2016 RD1_RS05465 88de01d2f6156c48d54986a1a734f9d0 228 Pfam PF01694 Rhomboid family 74 214 3.2E-18 T 23-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RD1_RS02725 ed22e06b65cbefce3372d319b605a280 745 Pfam PF00005 ABC transporter 534 683 7.5E-20 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS02725 ed22e06b65cbefce3372d319b605a280 745 SUPERFAMILY SSF52540 514 745 7.66E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02725 ed22e06b65cbefce3372d319b605a280 745 Gene3D G3DSA:1.20.1560.10 200 470 1.9E-29 T 23-04-2016 RD1_RS02725 ed22e06b65cbefce3372d319b605a280 745 PANTHER PTHR24222 198 745 5.6E-46 T 23-04-2016 RD1_RS02725 ed22e06b65cbefce3372d319b605a280 745 SMART SM00382 543 728 5.6E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS02725 ed22e06b65cbefce3372d319b605a280 745 SUPERFAMILY SSF90123 197 475 1.57E-33 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS02725 ed22e06b65cbefce3372d319b605a280 745 Gene3D G3DSA:3.40.50.300 517 744 1.5E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02725 ed22e06b65cbefce3372d319b605a280 745 Pfam PF00664 ABC transporter transmembrane region 200 465 2.4E-18 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RD1_RS15720 3dc9968acc7cc95f4869d0acd143bfda 180 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 9 170 7.1E-70 T 23-04-2016 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 UniPathway: UPA00344 RD1_RS15720 3dc9968acc7cc95f4869d0acd143bfda 180 SMART SM00852 16 160 9.4E-30 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS15720 3dc9968acc7cc95f4869d0acd143bfda 180 PANTHER PTHR10192:SF18 7 170 1.9E-68 T 23-04-2016 RD1_RS15720 3dc9968acc7cc95f4869d0acd143bfda 180 PANTHER PTHR10192 7 170 1.9E-68 T 23-04-2016 RD1_RS15720 3dc9968acc7cc95f4869d0acd143bfda 180 SUPERFAMILY SSF53218 9 171 3.01E-46 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS15720 3dc9968acc7cc95f4869d0acd143bfda 180 Pfam PF00994 Probable molybdopterin binding domain 16 157 3.4E-33 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS15720 3dc9968acc7cc95f4869d0acd143bfda 180 Gene3D G3DSA:3.40.980.10 10 168 2.2E-47 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS15720 3dc9968acc7cc95f4869d0acd143bfda 180 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 13 153 1.7E-33 T 23-04-2016 IPR001453 MoaB/Mog domain RD1_RS15720 3dc9968acc7cc95f4869d0acd143bfda 180 PIRSF PIRSF006443 1 168 4.1E-57 T 23-04-2016 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 UniPathway: UPA00344 RD1_RS03520 f55f12a0d703a593fe3f7aaf29afa886 674 SUPERFAMILY SSF63829 545 626 1.61E-9 T 23-04-2016 RD1_RS03520 f55f12a0d703a593fe3f7aaf29afa886 674 SUPERFAMILY SSF63829 331 507 1.61E-9 T 23-04-2016 RD1_RS03520 f55f12a0d703a593fe3f7aaf29afa886 674 PANTHER PTHR35399:SF2 11 674 3.6E-170 T 23-04-2016 RD1_RS03520 f55f12a0d703a593fe3f7aaf29afa886 674 Pfam PF05787 Bacterial protein of unknown function (DUF839) 84 625 5.6E-174 T 23-04-2016 IPR008557 Protein of unknown function DUF839 RD1_RS03520 f55f12a0d703a593fe3f7aaf29afa886 674 PANTHER PTHR35399 11 674 3.6E-170 T 23-04-2016 RD1_RS15695 e63c8aa0b84388c763d8984b5de1864e 314 Pfam PF03481 Putative GTP-binding controlling metal-binding 201 311 7.2E-19 T 23-04-2016 IPR005145 Putative GTP-binding controlling metal-binding domain RD1_RS15695 e63c8aa0b84388c763d8984b5de1864e 314 Pfam PF01300 Telomere recombination 22 197 1.1E-53 T 23-04-2016 IPR006070 YrdC-like domain GO:0003725 RD1_RS15695 e63c8aa0b84388c763d8984b5de1864e 314 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 8 208 8.0E-55 T 23-04-2016 IPR006070 YrdC-like domain GO:0003725 RD1_RS15695 e63c8aa0b84388c763d8984b5de1864e 314 Gene3D G3DSA:3.90.870.10 10 210 1.3E-73 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RD1_RS15695 e63c8aa0b84388c763d8984b5de1864e 314 PANTHER PTHR17490:SF3 10 313 3.9E-95 T 23-04-2016 RD1_RS15695 e63c8aa0b84388c763d8984b5de1864e 314 SUPERFAMILY SSF55821 8 210 2.84E-62 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RD1_RS15695 e63c8aa0b84388c763d8984b5de1864e 314 PANTHER PTHR17490 10 313 3.9E-95 T 23-04-2016 RD1_RS15695 e63c8aa0b84388c763d8984b5de1864e 314 PIRSF PIRSF004930 1 313 1.7E-104 T 23-04-2016 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 RD1_RS13700 458a9139e2898ef5f740c18450a149a7 78 PIRSF PIRSF003113 1 78 3.3E-17 T 23-04-2016 IPR002634 BolA protein RD1_RS13700 458a9139e2898ef5f740c18450a149a7 78 Pfam PF01722 BolA-like protein 22 78 5.5E-13 T 23-04-2016 IPR002634 BolA protein RD1_RS13700 458a9139e2898ef5f740c18450a149a7 78 Gene3D G3DSA:3.30.300.90 1 78 1.4E-21 T 23-04-2016 IPR002634 BolA protein RD1_RS13700 458a9139e2898ef5f740c18450a149a7 78 SUPERFAMILY SSF82657 1 78 4.58E-21 T 23-04-2016 IPR002634 BolA protein RD1_RS13865 ff12154f0e37b322fd3bfd9c3989dd9a 148 Gene3D G3DSA:3.90.1720.10 5 141 2.8E-23 T 23-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RD1_RS13865 ff12154f0e37b322fd3bfd9c3989dd9a 148 TIGRFAM TIGR02219 phage_NlpC_fam: putative phage cell wall peptidase, NlpC/P60 family 8 144 2.7E-53 T 23-04-2016 IPR011929 NlpC/P60 family, putative phage cell wall peptidase RD1_RS13865 ff12154f0e37b322fd3bfd9c3989dd9a 148 SUPERFAMILY SSF54001 4 138 4.91E-14 T 23-04-2016 RD1_RS09600 af15aebbd921790a74a45fc4b58a2010 331 PANTHER PTHR39342:SF1 5 323 6.9E-45 T 23-04-2016 RD1_RS09600 af15aebbd921790a74a45fc4b58a2010 331 PANTHER PTHR39342 5 323 6.9E-45 T 23-04-2016 RD1_RS09600 af15aebbd921790a74a45fc4b58a2010 331 Pfam PF05128 Domain of unknown function (DUF697) 168 325 3.3E-47 T 23-04-2016 IPR021147 Protein of unknown function DUF697 RD1_RS09600 af15aebbd921790a74a45fc4b58a2010 331 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 49 320 2.0E-52 T 23-04-2016 IPR006507 Uncharacterised protein family UPF0283 RD1_RS02865 0faca4280df3ffc93ef2a15c2984579e 232 PANTHER PTHR31881 7 222 7.1E-45 T 23-04-2016 RD1_RS02865 0faca4280df3ffc93ef2a15c2984579e 232 Pfam PF04654 Protein of unknown function, DUF599 17 222 9.4E-57 T 23-04-2016 IPR006747 Protein of unknown function DUF599 RD1_RS02865 0faca4280df3ffc93ef2a15c2984579e 232 PANTHER PTHR31881:SF3 7 222 7.1E-45 T 23-04-2016 RD1_RS07185 b9d7738d9e4915c3857471725f7f0186 195 PANTHER PTHR41729:SF1 1 174 8.3E-42 T 23-04-2016 RD1_RS07185 b9d7738d9e4915c3857471725f7f0186 195 PANTHER PTHR41729 1 174 8.3E-42 T 23-04-2016 RD1_RS07185 b9d7738d9e4915c3857471725f7f0186 195 Pfam PF13875 Domain of unknown function (DUF4202) 7 189 3.0E-60 T 23-04-2016 IPR025255 Protein of unknown function DUF4202 RD1_RS16605 35844de8fae2d32d45e9038507fcad79 257 Pfam PF02110 Hydroxyethylthiazole kinase family 7 246 1.8E-74 T 23-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS16605 35844de8fae2d32d45e9038507fcad79 257 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 7 246 3.4E-77 T 23-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS16605 35844de8fae2d32d45e9038507fcad79 257 SUPERFAMILY SSF53613 5 247 4.26E-60 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS16605 35844de8fae2d32d45e9038507fcad79 257 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 15 22 3.3E-34 T 23-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS16605 35844de8fae2d32d45e9038507fcad79 257 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 28 49 3.3E-34 T 23-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS16605 35844de8fae2d32d45e9038507fcad79 257 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 59 67 3.3E-34 T 23-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS16605 35844de8fae2d32d45e9038507fcad79 257 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 115 129 3.3E-34 T 23-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS16605 35844de8fae2d32d45e9038507fcad79 257 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 159 176 3.3E-34 T 23-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS16605 35844de8fae2d32d45e9038507fcad79 257 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 85 102 3.3E-34 T 23-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS16605 35844de8fae2d32d45e9038507fcad79 257 PANTHER PTHR20857:SF19 6 257 2.5E-72 T 23-04-2016 RD1_RS16605 35844de8fae2d32d45e9038507fcad79 257 Gene3D G3DSA:3.40.1190.20 6 249 6.3E-81 T 23-04-2016 IPR029056 Ribokinase-like RD1_RS16605 35844de8fae2d32d45e9038507fcad79 257 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 9 253 30.069 T 23-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS16605 35844de8fae2d32d45e9038507fcad79 257 PANTHER PTHR20857 6 257 2.5E-72 T 23-04-2016 RD1_RS16605 35844de8fae2d32d45e9038507fcad79 257 PIRSF PIRSF000513 2 256 2.5E-87 T 23-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RD1_RS12400 e7d0db6537248f9b44f7861db516e723 512 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 32 503 5.0E-188 T 23-04-2016 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 RD1_RS12400 e7d0db6537248f9b44f7861db516e723 512 Pfam PF01458 Uncharacterized protein family (UPF0051) 250 483 5.9E-71 T 23-04-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 RD1_RS12400 e7d0db6537248f9b44f7861db516e723 512 PANTHER PTHR30508:SF1 33 140 1.8E-300 T 23-04-2016 RD1_RS12400 e7d0db6537248f9b44f7861db516e723 512 PANTHER PTHR30508:SF1 156 512 1.8E-300 T 23-04-2016 RD1_RS12400 e7d0db6537248f9b44f7861db516e723 512 PANTHER PTHR30508 33 140 1.8E-300 T 23-04-2016 RD1_RS12400 e7d0db6537248f9b44f7861db516e723 512 PANTHER PTHR30508 156 512 1.8E-300 T 23-04-2016 RD1_RS12400 e7d0db6537248f9b44f7861db516e723 512 SUPERFAMILY SSF101960 53 98 5.75E-139 T 23-04-2016 RD1_RS12400 e7d0db6537248f9b44f7861db516e723 512 SUPERFAMILY SSF101960 125 509 5.75E-139 T 23-04-2016 RD1_RS18110 981156ae4387cb84bec61bd03e2e2653 221 SUPERFAMILY SSF143081 2 221 2.49E-69 T 23-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RD1_RS18110 981156ae4387cb84bec61bd03e2e2653 221 Gene3D G3DSA:3.90.1680.10 1 221 2.0E-65 T 23-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RD1_RS18110 981156ae4387cb84bec61bd03e2e2653 221 PANTHER PTHR13604 2 221 6.5E-65 T 23-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RD1_RS18110 981156ae4387cb84bec61bd03e2e2653 221 Pfam PF02586 SOS response associated peptidase (SRAP) 1 209 2.7E-58 T 23-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RD1_RS07400 8a2ab8a2834e51da5c9499cd596a96b3 129 SUPERFAMILY SSF161084 2 128 4.71E-30 T 23-04-2016 RD1_RS07400 8a2ab8a2834e51da5c9499cd596a96b3 129 Pfam PF01124 MAPEG family 7 128 1.1E-23 T 23-04-2016 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein RD1_RS07400 8a2ab8a2834e51da5c9499cd596a96b3 129 Gene3D G3DSA:1.20.120.550 9 126 6.5E-18 T 23-04-2016 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain RD1_RS08085 57c36993afe67ad17f590b899080a8b6 262 PANTHER PTHR11941:SF65 3 261 6.0E-74 T 23-04-2016 RD1_RS08085 57c36993afe67ad17f590b899080a8b6 262 PANTHER PTHR11941 3 261 6.0E-74 T 23-04-2016 RD1_RS08085 57c36993afe67ad17f590b899080a8b6 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 261 2.0E-38 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RD1_RS08085 57c36993afe67ad17f590b899080a8b6 262 SUPERFAMILY SSF52096 2 261 1.61E-68 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS08085 57c36993afe67ad17f590b899080a8b6 262 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 107 127 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RD1_RS08085 57c36993afe67ad17f590b899080a8b6 262 Gene3D G3DSA:3.90.226.10 2 261 2.1E-65 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RD1_RS06250 5571f86949094b57c67609d9161f8549 150 Pfam PF11911 Protein of unknown function (DUF3429) 5 148 1.3E-32 T 23-04-2016 IPR021836 Protein of unknown function DUF3429 RD1_RS06250 5571f86949094b57c67609d9161f8549 150 PANTHER PTHR15887 1 146 7.5E-15 T 23-04-2016 RD1_RS19080 4f8c3c95217c3c4135029ad0c30f90df 357 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 168 351 1.9E-20 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS19080 4f8c3c95217c3c4135029ad0c30f90df 357 Gene3D G3DSA:1.10.3720.10 144 348 1.1E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS19080 4f8c3c95217c3c4135029ad0c30f90df 357 SUPERFAMILY SSF161098 144 343 1.57E-22 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS19080 4f8c3c95217c3c4135029ad0c30f90df 357 PANTHER PTHR30151 4 106 6.6E-85 T 23-04-2016 RD1_RS19080 4f8c3c95217c3c4135029ad0c30f90df 357 PANTHER PTHR30151 146 357 6.6E-85 T 23-04-2016 RD1_RS19080 4f8c3c95217c3c4135029ad0c30f90df 357 PANTHER PTHR30151:SF7 4 106 6.6E-85 T 23-04-2016 RD1_RS19080 4f8c3c95217c3c4135029ad0c30f90df 357 PANTHER PTHR30151:SF7 146 357 6.6E-85 T 23-04-2016 RD1_RS00055 92454c774670a3be80f8450df8c17912 416 PANTHER PTHR13847 21 398 1.2E-43 T 23-04-2016 RD1_RS00055 92454c774670a3be80f8450df8c17912 416 Pfam PF01266 FAD dependent oxidoreductase 33 379 3.3E-55 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RD1_RS00055 92454c774670a3be80f8450df8c17912 416 TIGRFAM TIGR01373 soxB: sarcosine oxidase, beta subunit family 2 406 2.7E-201 T 23-04-2016 IPR006278 Sarcosine oxidase subunit beta GO:0008115|GO:0046653|GO:0055114 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS00055 92454c774670a3be80f8450df8c17912 416 Gene3D G3DSA:3.30.9.10 103 175 4.0E-11 T 23-04-2016 RD1_RS00055 92454c774670a3be80f8450df8c17912 416 Gene3D G3DSA:3.30.9.10 251 261 4.0E-11 T 23-04-2016 RD1_RS00055 92454c774670a3be80f8450df8c17912 416 Gene3D G3DSA:3.50.50.60 176 250 2.2E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00055 92454c774670a3be80f8450df8c17912 416 Gene3D G3DSA:3.50.50.60 22 102 2.2E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00055 92454c774670a3be80f8450df8c17912 416 Gene3D G3DSA:3.50.50.60 342 400 2.2E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00055 92454c774670a3be80f8450df8c17912 416 SUPERFAMILY SSF51905 32 252 7.2E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00055 92454c774670a3be80f8450df8c17912 416 SUPERFAMILY SSF51905 342 403 7.2E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS00055 92454c774670a3be80f8450df8c17912 416 SUPERFAMILY SSF54373 270 337 3.34E-5 T 23-04-2016 RD1_RS09140 685526e35452b81a0d76c6c017beaa57 278 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 5 218 6.4E-12 T 23-04-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 RD1_RS09140 685526e35452b81a0d76c6c017beaa57 278 Gene3D G3DSA:3.40.720.10 4 255 6.5E-29 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RD1_RS09140 685526e35452b81a0d76c6c017beaa57 278 SUPERFAMILY SSF53649 3 264 1.49E-39 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RD1_RS17570 cfaef4ffc7694ead0c1fcdafaf462fa1 279 PANTHER PTHR10605 10 179 2.8E-20 T 23-04-2016 RD1_RS17570 cfaef4ffc7694ead0c1fcdafaf462fa1 279 Pfam PF00685 Sulfotransferase domain 10 178 2.8E-12 T 23-04-2016 IPR000863 Sulfotransferase domain GO:0008146 RD1_RS17570 cfaef4ffc7694ead0c1fcdafaf462fa1 279 PANTHER PTHR10605:SF40 10 179 2.8E-20 T 23-04-2016 RD1_RS17570 cfaef4ffc7694ead0c1fcdafaf462fa1 279 SUPERFAMILY SSF52540 1 207 4.18E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17570 cfaef4ffc7694ead0c1fcdafaf462fa1 279 SUPERFAMILY SSF52540 236 276 4.18E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS17570 cfaef4ffc7694ead0c1fcdafaf462fa1 279 Gene3D G3DSA:3.40.50.300 2 276 4.3E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11115 15db2b60feb0ff84289016b0b351af3e 370 Gene3D G3DSA:3.40.50.10490 203 358 2.1E-19 T 23-04-2016 RD1_RS11115 15db2b60feb0ff84289016b0b351af3e 370 PANTHER PTHR10937 34 358 2.3E-27 T 23-04-2016 RD1_RS11115 15db2b60feb0ff84289016b0b351af3e 370 SUPERFAMILY SSF53697 40 359 4.67E-48 T 23-04-2016 RD1_RS11115 15db2b60feb0ff84289016b0b351af3e 370 Pfam PF01380 SIS domain 66 187 3.6E-12 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RD1_RS11115 15db2b60feb0ff84289016b0b351af3e 370 Pfam PF01380 SIS domain 230 357 8.7E-8 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RD1_RS11115 15db2b60feb0ff84289016b0b351af3e 370 Gene3D G3DSA:3.40.50.10490 33 201 2.0E-23 T 23-04-2016 RD1_RS18710 0bec2c399f69ff406cad06e46df5397f 315 PANTHER PTHR10846 19 313 3.1E-49 T 23-04-2016 IPR004481 Sodium/potassium/calcium exchanger Reactome: REACT_15518 RD1_RS18710 0bec2c399f69ff406cad06e46df5397f 315 Pfam PF01699 Sodium/calcium exchanger protein 174 314 2.7E-34 T 23-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 RD1_RS18710 0bec2c399f69ff406cad06e46df5397f 315 Pfam PF01699 Sodium/calcium exchanger protein 4 138 1.2E-21 T 23-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 RD1_RS18710 0bec2c399f69ff406cad06e46df5397f 315 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 9 309 3.0E-67 T 23-04-2016 IPR004481 Sodium/potassium/calcium exchanger Reactome: REACT_15518 RD1_RS03530 306c3b92ae5b1496ce69d52b78d0cdc6 629 Pfam PF09822 ABC-type uncharacterized transport system 46 303 5.6E-55 T 23-04-2016 IPR019196 ABC-type uncharacterised transport system RD1_RS09215 38860746316e8b4420389e608b1e500d 149 Gene3D G3DSA:3.40.140.10 4 146 5.1E-52 T 23-04-2016 RD1_RS09215 38860746316e8b4420389e608b1e500d 149 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 90 - T 23-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RD1_RS09215 38860746316e8b4420389e608b1e500d 149 Pfam PF14437 MafB19-like deaminase 5 148 1.4E-28 T 23-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 RD1_RS09215 38860746316e8b4420389e608b1e500d 149 SUPERFAMILY SSF53927 4 148 4.18E-49 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RD1_RS09215 38860746316e8b4420389e608b1e500d 149 PANTHER PTHR11079 6 149 4.1E-35 T 23-04-2016 RD1_RS09215 38860746316e8b4420389e608b1e500d 149 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 7 149 45.792 T 23-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 RD1_RS11300 8c252b6904f29a13283986e2cffccff0 337 Gene3D G3DSA:2.30.30.240 73 113 6.4E-5 T 23-04-2016 RD1_RS11300 8c252b6904f29a13283986e2cffccff0 337 Gene3D G3DSA:2.30.30.240 252 300 1.5E-7 T 23-04-2016 RD1_RS11300 8c252b6904f29a13283986e2cffccff0 337 Pfam PF05239 PRC-barrel domain 41 123 1.7E-8 T 23-04-2016 IPR027275 PRC-barrel domain RD1_RS11300 8c252b6904f29a13283986e2cffccff0 337 Pfam PF05239 PRC-barrel domain 252 310 1.4E-9 T 23-04-2016 IPR027275 PRC-barrel domain RD1_RS11300 8c252b6904f29a13283986e2cffccff0 337 SUPERFAMILY SSF50346 248 306 5.69E-9 T 23-04-2016 IPR011033 PRC-barrel-like RD1_RS11300 8c252b6904f29a13283986e2cffccff0 337 SUPERFAMILY SSF50346 42 117 9.22E-8 T 23-04-2016 IPR011033 PRC-barrel-like RD1_RS11900 f63dc2badbe014c9747bfb6bee4247e9 295 SUPERFAMILY SSF52540 22 172 2.1E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11900 f63dc2badbe014c9747bfb6bee4247e9 295 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 22 288 1.9E-51 T 23-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RD1_RS11900 f63dc2badbe014c9747bfb6bee4247e9 295 Pfam PF01715 IPP transferase 56 287 2.9E-52 T 23-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RD1_RS11900 f63dc2badbe014c9747bfb6bee4247e9 295 PANTHER PTHR11088 13 290 8.2E-56 T 23-04-2016 RD1_RS11900 f63dc2badbe014c9747bfb6bee4247e9 295 Gene3D G3DSA:1.10.287.890 207 286 4.1E-28 T 23-04-2016 RD1_RS11900 f63dc2badbe014c9747bfb6bee4247e9 295 Gene3D G3DSA:3.40.50.300 19 176 3.8E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS11900 f63dc2badbe014c9747bfb6bee4247e9 295 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 21 288 22.007 T 23-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RD1_RS14600 fb52d266ab8b7c46b0557fc8efb67365 221 Pfam PF02230 Phospholipase/Carboxylesterase 14 216 1.2E-35 T 23-04-2016 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 RD1_RS14600 fb52d266ab8b7c46b0557fc8efb67365 221 SUPERFAMILY SSF53474 13 219 1.08E-45 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS14600 fb52d266ab8b7c46b0557fc8efb67365 221 PANTHER PTHR10655 13 219 3.1E-34 T 23-04-2016 RD1_RS14600 fb52d266ab8b7c46b0557fc8efb67365 221 Gene3D G3DSA:3.40.50.1820 14 219 1.1E-45 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS09270 1b1541b1134b61025803957c5e90e19b 291 SUPERFAMILY SSF53850 90 281 2.17E-21 T 23-04-2016 RD1_RS09270 1b1541b1134b61025803957c5e90e19b 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 1.2E-19 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS09270 1b1541b1134b61025803957c5e90e19b 291 SUPERFAMILY SSF46785 4 112 3.98E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS09270 1b1541b1134b61025803957c5e90e19b 291 Gene3D G3DSA:1.10.10.10 2 82 2.6E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS09270 1b1541b1134b61025803957c5e90e19b 291 PANTHER PTHR30579:SF0 1 280 3.0E-51 T 23-04-2016 RD1_RS09270 1b1541b1134b61025803957c5e90e19b 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 5.2E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS09270 1b1541b1134b61025803957c5e90e19b 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 5.2E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS09270 1b1541b1134b61025803957c5e90e19b 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 5.2E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RD1_RS09270 1b1541b1134b61025803957c5e90e19b 291 Pfam PF03466 LysR substrate binding domain 89 238 7.0E-17 T 23-04-2016 IPR005119 LysR, substrate-binding RD1_RS09270 1b1541b1134b61025803957c5e90e19b 291 Gene3D G3DSA:3.40.190.10 91 217 6.0E-16 T 23-04-2016 RD1_RS09270 1b1541b1134b61025803957c5e90e19b 291 PANTHER PTHR30579 1 280 3.0E-51 T 23-04-2016 RD1_RS08755 acc50f05bcc05b193f19a0b2fbb92f86 230 Pfam PF00117 Glutamine amidotransferase class-I 74 176 5.6E-12 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RD1_RS08755 acc50f05bcc05b193f19a0b2fbb92f86 230 Gene3D G3DSA:3.40.50.880 19 192 1.3E-40 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS08755 acc50f05bcc05b193f19a0b2fbb92f86 230 PANTHER PTHR11922 42 188 2.2E-33 T 23-04-2016 RD1_RS08755 acc50f05bcc05b193f19a0b2fbb92f86 230 SUPERFAMILY SSF52317 18 200 1.86E-37 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RD1_RS01225 adcf7db72b99194a3d82d9487318b2cf 88 SUPERFAMILY SSF46689 1 71 3.76E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS01225 adcf7db72b99194a3d82d9487318b2cf 88 Gene3D G3DSA:1.10.10.60 8 84 1.8E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS01225 adcf7db72b99194a3d82d9487318b2cf 88 PANTHER PTHR33609 2 86 4.9E-34 T 23-04-2016 RD1_RS01225 adcf7db72b99194a3d82d9487318b2cf 88 Pfam PF01527 Transposase 2 71 2.3E-22 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RD1_RS08010 e20dbffd340368754d14159ebd47142e 233 SUPERFAMILY SSF52540 30 224 2.17E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08010 e20dbffd340368754d14159ebd47142e 233 PANTHER PTHR24220 9 224 4.6E-64 T 23-04-2016 RD1_RS08010 e20dbffd340368754d14159ebd47142e 233 SMART SM00382 34 226 1.2E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS08010 e20dbffd340368754d14159ebd47142e 233 PANTHER PTHR24220:SF578 9 224 4.6E-64 T 23-04-2016 RD1_RS08010 e20dbffd340368754d14159ebd47142e 233 Gene3D G3DSA:3.40.50.300 6 224 1.4E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS08010 e20dbffd340368754d14159ebd47142e 233 Pfam PF00005 ABC transporter 30 178 1.1E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS11730 8d5f56370866076553e17964471b93f2 119 PANTHER PTHR21192 14 116 9.1E-21 T 23-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RD1_RS11730 8d5f56370866076553e17964471b93f2 119 SUPERFAMILY SSF64076 1 117 1.44E-36 T 23-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RD1_RS11730 8d5f56370866076553e17964471b93f2 119 Gene3D G3DSA:3.40.1230.10 1 117 3.7E-33 T 23-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RD1_RS11730 8d5f56370866076553e17964471b93f2 119 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 14 115 2.2E-27 T 23-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RD1_RS00280 dd5a772c7282fa1e17e4461638e9ab67 144 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 29 110 7.1E-12 T 23-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RD1_RS00280 dd5a772c7282fa1e17e4461638e9ab67 144 SUPERFAMILY SSF51316 6 129 7.85E-27 T 23-04-2016 IPR011057 Mss4-like RD1_RS00280 dd5a772c7282fa1e17e4461638e9ab67 144 Gene3D G3DSA:3.90.1590.10 3 132 1.2E-23 T 23-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RD1_RS00475 cab16a56702067d3886b61c22308b2a7 52 SUPERFAMILY SSF56918 4 49 2.88E-16 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RD1_RS00475 cab16a56702067d3886b61c22308b2a7 52 Gene3D G3DSA:1.20.5.890 4 44 2.8E-23 T 23-04-2016 RD1_RS00475 cab16a56702067d3886b61c22308b2a7 52 ProSitePatterns PS00968 Antenna complexes alpha subunits signature. 26 43 - T 23-04-2016 IPR002361 Antenna complex, alpha subunit conserved site GO:0016021|GO:0019684|GO:0019866|GO:0030077|GO:0045156 RD1_RS00475 cab16a56702067d3886b61c22308b2a7 52 Pfam PF00556 Antenna complex alpha/beta subunit 5 43 5.4E-15 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RD1_RS02275 7b821f8915db7fab65ab1082964f4bf6 219 PANTHER PTHR30582:SF1 69 200 2.2E-34 T 23-04-2016 RD1_RS02275 7b821f8915db7fab65ab1082964f4bf6 219 Gene3D G3DSA:2.40.440.10 71 205 1.5E-25 T 23-04-2016 RD1_RS02275 7b821f8915db7fab65ab1082964f4bf6 219 SUPERFAMILY SSF141523 72 119 8.11E-25 T 23-04-2016 RD1_RS02275 7b821f8915db7fab65ab1082964f4bf6 219 SUPERFAMILY SSF141523 147 209 8.11E-25 T 23-04-2016 RD1_RS02275 7b821f8915db7fab65ab1082964f4bf6 219 PANTHER PTHR30582 69 200 2.2E-34 T 23-04-2016 RD1_RS02275 7b821f8915db7fab65ab1082964f4bf6 219 Pfam PF03734 L,D-transpeptidase catalytic domain 74 205 1.2E-12 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RD1_RS11065 78b9cc7e1595c906c3c9d11297f6e4cc 266 PANTHER PTHR30193:SF20 1 265 8.6E-58 T 23-04-2016 RD1_RS11065 78b9cc7e1595c906c3c9d11297f6e4cc 266 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 253 1.6E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11065 78b9cc7e1595c906c3c9d11297f6e4cc 266 SUPERFAMILY SSF161098 6 257 1.05E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11065 78b9cc7e1595c906c3c9d11297f6e4cc 266 Gene3D G3DSA:1.10.3720.10 13 255 2.5E-48 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS11065 78b9cc7e1595c906c3c9d11297f6e4cc 266 PANTHER PTHR30193 1 265 8.6E-58 T 23-04-2016 RD1_RS12890 c0d4b6f4276c48475b3c19e766f02f46 784 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 503 773 1.2E-29 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS12890 c0d4b6f4276c48475b3c19e766f02f46 784 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 110 334 2.9E-32 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS12890 c0d4b6f4276c48475b3c19e766f02f46 784 PANTHER PTHR33362:SF7 607 781 3.0E-109 T 23-04-2016 RD1_RS12890 c0d4b6f4276c48475b3c19e766f02f46 784 PANTHER PTHR33362:SF7 255 303 3.0E-109 T 23-04-2016 RD1_RS12890 c0d4b6f4276c48475b3c19e766f02f46 784 PANTHER PTHR33362:SF7 496 558 3.0E-109 T 23-04-2016 RD1_RS12890 c0d4b6f4276c48475b3c19e766f02f46 784 PANTHER PTHR33362:SF7 113 232 3.0E-109 T 23-04-2016 RD1_RS12890 c0d4b6f4276c48475b3c19e766f02f46 784 PANTHER PTHR33362 607 781 3.0E-109 T 23-04-2016 RD1_RS12890 c0d4b6f4276c48475b3c19e766f02f46 784 PANTHER PTHR33362 255 303 3.0E-109 T 23-04-2016 RD1_RS12890 c0d4b6f4276c48475b3c19e766f02f46 784 PANTHER PTHR33362 496 558 3.0E-109 T 23-04-2016 RD1_RS12890 c0d4b6f4276c48475b3c19e766f02f46 784 PANTHER PTHR33362 113 232 3.0E-109 T 23-04-2016 RD1_RS00225 f56c10f59119df6c8137cda79fca1685 159 Pfam PF04390 Lipopolysaccharide-assembly 10 153 8.0E-14 T 23-04-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 RD1_RS02980 965be0584e42b83cc0fb85158053b36a 246 Pfam PF09992 Phosphodiester glycosidase 73 219 5.1E-21 T 23-04-2016 IPR018711 Phosphodiester glycosidase RD1_RS07255 689337de91f8a2a79cba9b978d80f46b 149 Pfam PF13404 AsnC-type helix-turn-helix domain 3 47 2.7E-9 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RD1_RS07255 689337de91f8a2a79cba9b978d80f46b 149 SUPERFAMILY SSF46785 2 65 1.1E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07255 689337de91f8a2a79cba9b978d80f46b 149 SMART SM00344 3 103 0.0015 T 23-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RD1_RS07255 689337de91f8a2a79cba9b978d80f46b 149 Gene3D G3DSA:1.10.10.10 1 55 2.0E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS07255 689337de91f8a2a79cba9b978d80f46b 149 PANTHER PTHR30154:SF21 1 146 5.9E-41 T 23-04-2016 RD1_RS07255 689337de91f8a2a79cba9b978d80f46b 149 PANTHER PTHR30154 1 146 5.9E-41 T 23-04-2016 RD1_RS02230 7cdf38d73632d3bed275a8216c4482fd 234 SMART SM00953 78 206 3.9E-35 T 23-04-2016 IPR014914 RES domain RD1_RS02230 7cdf38d73632d3bed275a8216c4482fd 234 Pfam PF08808 RES domain 66 214 1.1E-29 T 23-04-2016 IPR014914 RES domain RD1_RS01110 cebbe20082c8cf85e8920c3a2d7f92df 329 PANTHER PTHR33376 1 327 4.2E-43 T 23-04-2016 RD1_RS01110 cebbe20082c8cf85e8920c3a2d7f92df 329 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 47 306 6.5E-29 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS18325 8dff7f1eac0e7ad1cad2a4c19c492c3c 255 Pfam PF00005 ABC transporter 19 148 4.1E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RD1_RS18325 8dff7f1eac0e7ad1cad2a4c19c492c3c 255 SUPERFAMILY SSF52540 4 213 4.46E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18325 8dff7f1eac0e7ad1cad2a4c19c492c3c 255 SMART SM00382 28 196 9.7E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain RD1_RS18325 8dff7f1eac0e7ad1cad2a4c19c492c3c 255 ProSitePatterns PS00211 ABC transporters family signature. 120 134 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RD1_RS18325 8dff7f1eac0e7ad1cad2a4c19c492c3c 255 Gene3D G3DSA:3.40.50.300 5 213 3.1E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS18325 8dff7f1eac0e7ad1cad2a4c19c492c3c 255 PANTHER PTHR24220:SF466 5 233 1.1E-81 T 23-04-2016 RD1_RS18325 8dff7f1eac0e7ad1cad2a4c19c492c3c 255 PANTHER PTHR24220 5 233 1.1E-81 T 23-04-2016 RD1_RS06260 3910d62ac8c5c1e98bbd18838a1b86a0 316 Pfam PF02401 LytB protein 9 285 3.9E-87 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 RD1_RS06260 3910d62ac8c5c1e98bbd18838a1b86a0 316 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 8 287 3.4E-97 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 RD1_RS06260 3910d62ac8c5c1e98bbd18838a1b86a0 316 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 6 290 36.212 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 RD1_RS06260 3910d62ac8c5c1e98bbd18838a1b86a0 316 PANTHER PTHR30426 6 313 2.4E-141 T 23-04-2016 RD1_RS06230 bf588c1511d640eb538c10b81396423e 212 PANTHER PTHR37549:SF1 6 194 5.3E-19 T 23-04-2016 RD1_RS06230 bf588c1511d640eb538c10b81396423e 212 PANTHER PTHR37549 6 194 5.3E-19 T 23-04-2016 RD1_RS06230 bf588c1511d640eb538c10b81396423e 212 Pfam PF07007 Protein of unknown function (DUF1311) 37 101 2.1E-7 T 23-04-2016 IPR009739 Protein of unknown function DUF1311 RD1_RS06230 bf588c1511d640eb538c10b81396423e 212 SUPERFAMILY SSF141488 131 210 6.15E-15 T 23-04-2016 IPR018660 C-type lysozyme, inhibitor RD1_RS06230 bf588c1511d640eb538c10b81396423e 212 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 136 205 9.3E-14 T 23-04-2016 IPR018660 C-type lysozyme, inhibitor RD1_RS12550 5e560e50a0b2c42e706658864f426be5 270 Pfam PF10670 Domain of unknown function (DUF4198) 19 240 4.4E-29 T 23-04-2016 IPR019613 Protein of unknown function DUF4198 RD1_RS15325 3d1512194410278d88b4f29760bb9673 154 Pfam PF13783 Domain of unknown function (DUF4177) 4 75 5.0E-7 T 23-04-2016 IPR025234 Protein of unknown function DUF4177 RD1_RS08250 52e85c81901777abf55d8e74910937a3 89 Pfam PF04267 Sarcosine oxidase, delta subunit family 3 80 1.1E-29 T 23-04-2016 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS08100 7764b69135f88a6f8b5e30b4a2e1a108 292 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 22 218 1.9E-26 T 23-04-2016 IPR008775 Phytanoyl-CoA dioxygenase RD1_RS08100 7764b69135f88a6f8b5e30b4a2e1a108 292 PANTHER PTHR20883 2 229 3.4E-39 T 23-04-2016 RD1_RS08100 7764b69135f88a6f8b5e30b4a2e1a108 292 Gene3D G3DSA:2.60.120.620 7 230 6.9E-57 T 23-04-2016 RD1_RS08100 7764b69135f88a6f8b5e30b4a2e1a108 292 SUPERFAMILY SSF51197 9 264 2.93E-58 T 23-04-2016 RD1_RS00340 40a0f8e9ca607af8e89885a1a43be48a 212 Pfam PF04403 Paraquat-inducible protein A 54 206 6.8E-30 T 23-04-2016 IPR007498 Paraquat-inducible protein A RD1_RS00340 40a0f8e9ca607af8e89885a1a43be48a 212 PANTHER PTHR30462 13 206 4.5E-19 T 23-04-2016 RD1_RS00340 40a0f8e9ca607af8e89885a1a43be48a 212 PANTHER PTHR30462:SF3 13 206 4.5E-19 T 23-04-2016 RD1_RS02945 fa0b810ecf7b1350ee80e54de8e3e920 196 Pfam PF01810 LysE type translocator 10 189 4.6E-11 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS02945 fa0b810ecf7b1350ee80e54de8e3e920 196 PANTHER PTHR30086 1 187 4.9E-14 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS10750 ad51c355cad953c448d12c99e0d6a274 209 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 40 172 2.7E-22 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS10750 ad51c355cad953c448d12c99e0d6a274 209 PANTHER PTHR35011 1 197 5.6E-13 T 23-04-2016 RD1_RS00975 a9fdf0277c4b5146eeeca3f585b8a406 206 Pfam PF01810 LysE type translocator 16 202 1.7E-21 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS00975 a9fdf0277c4b5146eeeca3f585b8a406 206 PANTHER PTHR30086 3 203 9.8E-23 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS09625 beb48367563174d0f5916bdec0ea8182 235 Pfam PF04340 Protein of unknown function, DUF484 23 234 3.0E-23 T 23-04-2016 IPR007435 Protein of unknown function DUF484 RD1_RS14960 410b22a7bd11eba041d920374f303c0b 119 PANTHER PTHR34784 1 109 2.2E-28 T 23-04-2016 RD1_RS14960 410b22a7bd11eba041d920374f303c0b 119 Pfam PF09585 Conserved hypothetical protein (Lin0512_fam) 5 106 1.5E-34 T 23-04-2016 IPR011719 Conserved hypothetical protein CHP02058 RD1_RS14960 410b22a7bd11eba041d920374f303c0b 119 Gene3D G3DSA:3.30.1330.20 1 109 2.4E-38 T 23-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain RD1_RS14960 410b22a7bd11eba041d920374f303c0b 119 TIGRFAM TIGR02058 lin0512_fam: conserved hypothetical protein 4 92 3.3E-20 T 23-04-2016 IPR011719 Conserved hypothetical protein CHP02058 RD1_RS02330 9c36ed6ebc1a8b39f1879e55df4fd82a 383 SUPERFAMILY SSF51569 49 328 2.93E-11 T 23-04-2016 RD1_RS02330 9c36ed6ebc1a8b39f1879e55df4fd82a 383 Gene3D G3DSA:3.20.20.70 45 320 8.8E-8 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS02330 9c36ed6ebc1a8b39f1879e55df4fd82a 383 Pfam PF06187 Protein of unknown function (DUF993) 3 382 2.5E-181 T 23-04-2016 IPR009334 Protein of unknown function DUF993 RD1_RS04840 d4c6fe3de6521ba26859384247f137e8 164 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 24 149 3.4E-25 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS14530 ac4f2e8e4cf2488ee41ffadce9a0f5fb 358 Gene3D G3DSA:2.70.40.10 3 164 4.9E-58 T 23-04-2016 IPR029054 dUTPase-like RD1_RS14530 ac4f2e8e4cf2488ee41ffadce9a0f5fb 358 Gene3D G3DSA:2.70.40.10 166 332 1.2E-62 T 23-04-2016 IPR029054 dUTPase-like RD1_RS14530 ac4f2e8e4cf2488ee41ffadce9a0f5fb 358 Pfam PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) 2 356 5.7E-171 T 23-04-2016 IPR010550 Deoxycytidine triphosphate deaminase, bacterial GO:0008829|GO:0009394 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 RD1_RS14530 ac4f2e8e4cf2488ee41ffadce9a0f5fb 358 PANTHER PTHR11241:SF1 3 161 7.2E-28 T 23-04-2016 RD1_RS14530 ac4f2e8e4cf2488ee41ffadce9a0f5fb 358 SUPERFAMILY SSF51283 4 163 8.64E-30 T 23-04-2016 IPR029054 dUTPase-like RD1_RS14530 ac4f2e8e4cf2488ee41ffadce9a0f5fb 358 SUPERFAMILY SSF51283 167 332 1.8E-25 T 23-04-2016 IPR029054 dUTPase-like RD1_RS14530 ac4f2e8e4cf2488ee41ffadce9a0f5fb 358 PANTHER PTHR11241 3 161 7.2E-28 T 23-04-2016 RD1_RS17020 6ba30a6d80a1d686a84a4237a5d45cfa 384 SUPERFAMILY SSF53850 228 327 7.28E-9 T 23-04-2016 RD1_RS17020 6ba30a6d80a1d686a84a4237a5d45cfa 384 SUPERFAMILY SSF53850 137 185 7.28E-9 T 23-04-2016 RD1_RS17020 6ba30a6d80a1d686a84a4237a5d45cfa 384 Gene3D G3DSA:3.40.190.10 23 96 3.8E-4 T 23-04-2016 RD1_RS17020 6ba30a6d80a1d686a84a4237a5d45cfa 384 Gene3D G3DSA:3.40.190.10 129 177 3.8E-4 T 23-04-2016 RD1_RS01475 ff3dcc9970e8bd3d7be62d40d73c0baf 115 Pfam PF10984 Protein of unknown function (DUF2794) 19 103 8.7E-40 T 23-04-2016 IPR021252 Protein of unknown function DUF2794 RD1_RS19125 6369b60c566688afa852170bf8bc2afc 221 Gene3D G3DSA:3.40.50.150 28 205 3.0E-31 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS19125 6369b60c566688afa852170bf8bc2afc 221 PANTHER PTHR10108 17 207 1.8E-24 T 23-04-2016 RD1_RS19125 6369b60c566688afa852170bf8bc2afc 221 SUPERFAMILY SSF53335 20 210 2.41E-35 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS19125 6369b60c566688afa852170bf8bc2afc 221 Pfam PF13489 Methyltransferase domain 40 200 9.6E-18 T 23-04-2016 RD1_RS04565 6e6bd812d9b2a4a4bc91610733713e5e 104 Pfam PF12840 Helix-turn-helix domain 7 77 1.7E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04565 6e6bd812d9b2a4a4bc91610733713e5e 104 PANTHER PTHR33154 1 103 2.4E-17 T 23-04-2016 RD1_RS04565 6e6bd812d9b2a4a4bc91610733713e5e 104 SMART SM00418 5 97 7.4E-8 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RD1_RS04565 6e6bd812d9b2a4a4bc91610733713e5e 104 SUPERFAMILY SSF46785 3 96 2.01E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS04565 6e6bd812d9b2a4a4bc91610733713e5e 104 Gene3D G3DSA:1.10.10.10 3 97 1.2E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11205 56b2a7bfaa2cea19e24a214a0dcc1d76 165 Gene3D G3DSA:3.40.50.620 3 155 3.4E-22 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RD1_RS11205 56b2a7bfaa2cea19e24a214a0dcc1d76 165 Pfam PF00582 Universal stress protein family 3 153 7.2E-16 T 23-04-2016 IPR006016 UspA GO:0006950 RD1_RS11205 56b2a7bfaa2cea19e24a214a0dcc1d76 165 SUPERFAMILY SSF52402 2 156 3.35E-22 T 23-04-2016 RD1_RS11205 56b2a7bfaa2cea19e24a214a0dcc1d76 165 PANTHER PTHR31964 129 153 7.5E-15 T 23-04-2016 RD1_RS11205 56b2a7bfaa2cea19e24a214a0dcc1d76 165 PANTHER PTHR31964 3 110 7.5E-15 T 23-04-2016 RD1_RS12995 6bdb53d6c99d1c7cea832c7c257cd5e7 414 PANTHER PTHR34475:SF1 159 384 7.3E-15 T 23-04-2016 RD1_RS12995 6bdb53d6c99d1c7cea832c7c257cd5e7 414 PANTHER PTHR34475:SF1 13 135 7.3E-15 T 23-04-2016 RD1_RS12995 6bdb53d6c99d1c7cea832c7c257cd5e7 414 Pfam PF13464 Domain of unknown function (DUF4115) 304 377 3.2E-14 T 23-04-2016 IPR025194 Domain of unknown function DUF4115 RD1_RS12995 6bdb53d6c99d1c7cea832c7c257cd5e7 414 Pfam PF13413 Helix-turn-helix domain 30 90 4.1E-17 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RD1_RS12995 6bdb53d6c99d1c7cea832c7c257cd5e7 414 PANTHER PTHR34475 159 384 7.3E-15 T 23-04-2016 RD1_RS12995 6bdb53d6c99d1c7cea832c7c257cd5e7 414 PANTHER PTHR34475 13 135 7.3E-15 T 23-04-2016 RD1_RS09695 a446f7764fde4c8865f458b40f61a15e 164 Pfam PF02472 Biopolymer transport protein ExbD/TolR 23 146 3.9E-26 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RD1_RS09695 a446f7764fde4c8865f458b40f61a15e 164 TIGRFAM TIGR02801 tolR: protein TolR 25 146 1.7E-39 T 23-04-2016 IPR014168 Biopolymer transport, TolR GO:0015031|GO:0016021 RD1_RS09695 a446f7764fde4c8865f458b40f61a15e 164 PANTHER PTHR30558 6 154 1.8E-36 T 23-04-2016 RD1_RS09695 a446f7764fde4c8865f458b40f61a15e 164 PANTHER PTHR30558:SF7 6 154 1.8E-36 T 23-04-2016 RD1_RS00615 84f2b1bec94334fe7675fad12ebe28f8 477 PIRSF PIRSF016565 10 472 2.3E-118 T 23-04-2016 IPR026036 PucC protein RD1_RS00615 84f2b1bec94334fe7675fad12ebe28f8 477 Gene3D G3DSA:1.20.1250.20 260 459 8.4E-8 T 23-04-2016 RD1_RS00615 84f2b1bec94334fe7675fad12ebe28f8 477 SUPERFAMILY SSF103473 29 459 6.54E-23 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS00615 84f2b1bec94334fe7675fad12ebe28f8 477 PANTHER PTHR23538 6 476 1.5E-68 T 23-04-2016 RD1_RS00615 84f2b1bec94334fe7675fad12ebe28f8 477 Pfam PF03209 PUCC protein 49 457 5.1E-148 T 23-04-2016 IPR004896 PucC-related RD1_RS00615 84f2b1bec94334fe7675fad12ebe28f8 477 Gene3D G3DSA:1.20.1250.20 30 223 7.9E-7 T 23-04-2016 RD1_RS19995 a464f13b244d21297e80685ce5091b8b 333 Pfam PF11927 Protein of unknown function (DUF3445) 48 283 5.6E-47 T 23-04-2016 IPR021848 Protein of unknown function DUF3445 RD1_RS09265 f76c8ca9b363dbe7a5de8812d047ddc6 71 Pfam PF06568 Domain of unknown function (DUF1127) 24 53 5.4E-9 T 23-04-2016 IPR009506 Protein of unknown function DUF1127 RD1_RS00140 196a49fea830c7f2897a395b097991af 194 Gene3D G3DSA:1.10.530.10 39 161 5.8E-7 T 23-04-2016 RD1_RS00140 196a49fea830c7f2897a395b097991af 194 SUPERFAMILY SSF53955 18 172 3.84E-19 T 23-04-2016 IPR023346 Lysozyme-like domain RD1_RS17910 d8ab4c65e307eabb192022d5acd99a27 176 SUPERFAMILY SSF69635 21 139 2.43E-9 T 23-04-2016 RD1_RS01140 bd0334210639f49ccb461e3f518f3034 256 SUPERFAMILY SSF88713 3 252 2.22E-91 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RD1_RS01140 bd0334210639f49ccb461e3f518f3034 256 Pfam PF03746 LamB/YcsF family 4 242 5.4E-90 T 23-04-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF RD1_RS01140 bd0334210639f49ccb461e3f518f3034 256 PANTHER PTHR30292:SF0 1 253 8.9E-99 T 23-04-2016 RD1_RS01140 bd0334210639f49ccb461e3f518f3034 256 PANTHER PTHR30292 1 253 8.9E-99 T 23-04-2016 RD1_RS07605 2df05b03073bf5957e588300e60f0980 364 PANTHER PTHR32196:SF30 11 354 2.6E-88 T 23-04-2016 RD1_RS07605 2df05b03073bf5957e588300e60f0980 364 PANTHER PTHR32196 11 354 2.6E-88 T 23-04-2016 RD1_RS07605 2df05b03073bf5957e588300e60f0980 364 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 340 6.3E-31 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS16760 474981c6bad04f1ab2a9d161edbf97c1 402 Gene3D G3DSA:3.40.640.10 33 243 3.0E-17 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RD1_RS16760 474981c6bad04f1ab2a9d161edbf97c1 402 Gene3D G3DSA:3.90.1150.10 244 402 1.1E-50 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RD1_RS16760 474981c6bad04f1ab2a9d161edbf97c1 402 PANTHER PTHR14084 8 395 3.2E-121 T 23-04-2016 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|UniPathway: UPA00253|UniPathway: UPA00334 RD1_RS16760 474981c6bad04f1ab2a9d161edbf97c1 402 TIGRFAM TIGR01814 kynureninase: kynureninase 11 385 1.6E-81 T 23-04-2016 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|UniPathway: UPA00253|UniPathway: UPA00334 RD1_RS16760 474981c6bad04f1ab2a9d161edbf97c1 402 PIRSF PIRSF038800 3 393 1.6E-127 T 23-04-2016 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|UniPathway: UPA00253|UniPathway: UPA00334 RD1_RS16760 474981c6bad04f1ab2a9d161edbf97c1 402 SUPERFAMILY SSF53383 7 387 3.1E-81 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RD1_RS16760 474981c6bad04f1ab2a9d161edbf97c1 402 Pfam PF00266 Aminotransferase class-V 136 337 3.8E-22 T 23-04-2016 IPR000192 Aminotransferase class V domain RD1_RS05690 e7fb11d9a84b49881dafc521dbe7a9fc 129 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 20 87 1.6E-13 T 23-04-2016 IPR025528 BrnA antitoxin of type II toxin-antitoxin system RD1_RS17595 e61b82c860a8814fd5959fef2662bbce 410 SUPERFAMILY SSF51126 65 404 1.33E-46 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RD1_RS17595 e61b82c860a8814fd5959fef2662bbce 410 Pfam PF13229 Right handed beta helix region 132 303 2.2E-12 T 23-04-2016 RD1_RS17595 e61b82c860a8814fd5959fef2662bbce 410 Gene3D G3DSA:2.160.20.10 48 390 1.1E-33 T 23-04-2016 IPR012334 Pectin lyase fold RD1_RS17595 e61b82c860a8814fd5959fef2662bbce 410 SMART SM00710 253 275 17.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS17595 e61b82c860a8814fd5959fef2662bbce 410 SMART SM00710 339 366 8700.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS17595 e61b82c860a8814fd5959fef2662bbce 410 SMART SM00710 280 301 2000.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS17595 e61b82c860a8814fd5959fef2662bbce 410 SMART SM00710 200 227 1600.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS17595 e61b82c860a8814fd5959fef2662bbce 410 SMART SM00710 164 186 54.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS17595 e61b82c860a8814fd5959fef2662bbce 410 SMART SM00710 229 251 5.1 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS17595 e61b82c860a8814fd5959fef2662bbce 410 SMART SM00710 137 159 3.3 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS17595 e61b82c860a8814fd5959fef2662bbce 410 SMART SM00710 312 334 2400.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS17595 e61b82c860a8814fd5959fef2662bbce 410 SMART SM00710 371 398 7500.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RD1_RS02315 df07b48c3b29862060fcb973e0d6242c 175 Pfam PF04773 FecR protein 43 129 3.7E-12 T 23-04-2016 IPR006860 FecR protein RD1_RS13945 b4ee1a70f27eb41aae30b296eecfc66b 388 Pfam PF02618 YceG-like family 43 372 6.9E-81 T 23-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like RD1_RS13945 b4ee1a70f27eb41aae30b296eecfc66b 388 PANTHER PTHR30518 190 385 7.4E-72 T 23-04-2016 RD1_RS13945 b4ee1a70f27eb41aae30b296eecfc66b 388 PANTHER PTHR30518 1 157 7.4E-72 T 23-04-2016 RD1_RS13945 b4ee1a70f27eb41aae30b296eecfc66b 388 Gene3D G3DSA:3.30.160.60 347 383 2.0E-18 T 23-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 RD1_RS13945 b4ee1a70f27eb41aae30b296eecfc66b 388 PANTHER PTHR30518:SF2 190 385 7.4E-72 T 23-04-2016 RD1_RS13945 b4ee1a70f27eb41aae30b296eecfc66b 388 PANTHER PTHR30518:SF2 1 157 7.4E-72 T 23-04-2016 RD1_RS13945 b4ee1a70f27eb41aae30b296eecfc66b 388 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 199 374 9.4E-59 T 23-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like RD1_RS00680 1de204749c02fc3a304e1c62e6836274 236 SUPERFAMILY SSF53955 108 162 9.57E-16 T 23-04-2016 IPR023346 Lysozyme-like domain RD1_RS00680 1de204749c02fc3a304e1c62e6836274 236 SUPERFAMILY SSF53955 38 81 9.57E-16 T 23-04-2016 IPR023346 Lysozyme-like domain RD1_RS00680 1de204749c02fc3a304e1c62e6836274 236 Gene3D G3DSA:1.10.530.10 40 162 4.3E-13 T 23-04-2016 RD1_RS00680 1de204749c02fc3a304e1c62e6836274 236 Pfam PF01464 Transglycosylase SLT domain 42 162 3.0E-9 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 RD1_RS12110 4a827bc4fa4ddcb7ebca8339a54eb4ea 396 Gene3D G3DSA:3.40.50.2300 26 227 1.5E-40 T 23-04-2016 RD1_RS12110 4a827bc4fa4ddcb7ebca8339a54eb4ea 396 PANTHER PTHR30483 1 393 7.0E-33 T 23-04-2016 RD1_RS12110 4a827bc4fa4ddcb7ebca8339a54eb4ea 396 SUPERFAMILY SSF53822 25 394 2.78E-56 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RD1_RS12110 4a827bc4fa4ddcb7ebca8339a54eb4ea 396 Pfam PF13458 Periplasmic binding protein 26 326 1.1E-30 T 23-04-2016 IPR028081 Leucine-binding protein domain RD1_RS00195 2745730c037ce1ab4441c0ddde6bf6db 362 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 187 361 5.6E-64 T 23-04-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 RD1_RS00195 2745730c037ce1ab4441c0ddde6bf6db 362 Pfam PF00925 GTP cyclohydrolase II 175 338 2.7E-58 T 23-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 RD1_RS00195 2745730c037ce1ab4441c0ddde6bf6db 362 SUPERFAMILY SSF142695 173 341 1.83E-56 T 23-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 RD1_RS00195 2745730c037ce1ab4441c0ddde6bf6db 362 PANTHER PTHR21327 122 361 1.7E-80 T 23-04-2016 RD1_RS00195 2745730c037ce1ab4441c0ddde6bf6db 362 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 168 362 37.009 T 23-04-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 RD1_RS01380 91b8ac22f4fa1602b99b6292b6018515 169 PIRSF PIRSF032064 1 169 4.4E-27 T 23-04-2016 IPR010593 Protein of unknown function DUF1159 RD1_RS01380 91b8ac22f4fa1602b99b6292b6018515 169 Pfam PF05258 Protein of unknown function (DUF721) 15 105 5.6E-14 T 23-04-2016 IPR007922 Protein of unknown function DUF721/UPF0232 RD1_RS03565 7d417e299a3234e9f85df6e163bad530 81 Gene3D G3DSA:1.10.238.10 23 72 2.2E-5 T 23-04-2016 IPR011992 EF-hand domain pair RD1_RS03565 7d417e299a3234e9f85df6e163bad530 81 SUPERFAMILY SSF47473 19 71 1.04E-6 T 23-04-2016 IPR011992 EF-hand domain pair RD1_RS19285 d4ba20d32b34929d601aa8e2af499d6d 163 Pfam PF14065 Protein of unknown function (DUF4255) 15 152 7.6E-25 T 23-04-2016 IPR025351 Protein of unknown function DUF4255 RD1_RS03640 a04c4f23c7f6160850b1d9fff986bfe0 333 PANTHER PTHR30365 1 333 7.8E-138 T 23-04-2016 RD1_RS03640 a04c4f23c7f6160850b1d9fff986bfe0 333 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 5 194 1.8E-46 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RD1_RS03640 a04c4f23c7f6160850b1d9fff986bfe0 333 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 5 322 4.4E-100 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RD1_RS03640 a04c4f23c7f6160850b1d9fff986bfe0 333 PANTHER PTHR30365:SF4 1 333 7.8E-138 T 23-04-2016 RD1_RS03640 a04c4f23c7f6160850b1d9fff986bfe0 333 PIRSF PIRSF000267 1 333 4.2E-94 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RD1_RS07115 4dc3d4b4ac169bfe1b8a5e48d3510e27 194 Gene3D G3DSA:3.30.1330.110 1 194 5.4E-83 T 23-04-2016 IPR009569 Amino acid synthesis, putative RD1_RS07115 4dc3d4b4ac169bfe1b8a5e48d3510e27 194 Pfam PF06684 Amino acid synthesis 5 180 3.1E-74 T 23-04-2016 IPR009569 Amino acid synthesis, putative RD1_RS07115 4dc3d4b4ac169bfe1b8a5e48d3510e27 194 SUPERFAMILY SSF160519 1 194 6.41E-75 T 23-04-2016 IPR009569 Amino acid synthesis, putative RD1_RS09885 1f95423b10dd695aba23b4899fbd9b9f 226 PANTHER PTHR23427 5 220 8.2E-31 T 23-04-2016 RD1_RS09885 1f95423b10dd695aba23b4899fbd9b9f 226 PANTHER PTHR23427:SF2 5 220 8.2E-31 T 23-04-2016 RD1_RS09885 1f95423b10dd695aba23b4899fbd9b9f 226 Pfam PF02104 SURF1 family 15 207 1.6E-33 T 23-04-2016 IPR002994 Surfeit locus 1/Shy1 GO:0016020 RD1_RS01950 7cc3827085ae51e13c562cb7bbd79c7d 234 SUPERFAMILY SSF52540 6 184 6.45E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS01950 7cc3827085ae51e13c562cb7bbd79c7d 234 PANTHER PTHR11825 82 226 7.9E-32 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RD1_RS01950 7cc3827085ae51e13c562cb7bbd79c7d 234 PANTHER PTHR11825:SF7 82 226 7.9E-32 T 23-04-2016 RD1_RS01505 eff785ce7cf73bbe6b652cd0a6b0480e 210 PANTHER PTHR12725:SF63 1 198 9.5E-27 T 23-04-2016 RD1_RS01505 eff785ce7cf73bbe6b652cd0a6b0480e 210 Pfam PF13419 Haloacid dehalogenase-like hydrolase 71 185 6.1E-6 T 23-04-2016 IPR023214 HAD-like domain RD1_RS01505 eff785ce7cf73bbe6b652cd0a6b0480e 210 PANTHER PTHR12725 1 198 9.5E-27 T 23-04-2016 RD1_RS01505 eff785ce7cf73bbe6b652cd0a6b0480e 210 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 83 185 1.5E-11 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RD1_RS01505 eff785ce7cf73bbe6b652cd0a6b0480e 210 SUPERFAMILY SSF56784 8 198 9.09E-33 T 23-04-2016 IPR023214 HAD-like domain RD1_RS01505 eff785ce7cf73bbe6b652cd0a6b0480e 210 Gene3D G3DSA:3.40.50.1000 6 198 6.5E-29 T 23-04-2016 IPR023214 HAD-like domain RD1_RS03735 0784bce86fd285837910f231bd251408 186 Gene3D G3DSA:3.60.21.10 1 168 3.6E-37 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS03735 0784bce86fd285837910f231bd251408 186 SUPERFAMILY SSF56300 4 151 2.71E-14 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RD1_RS00775 855894896916d9542639348cef20cdde 272 Gene3D G3DSA:1.10.3720.10 7 258 4.9E-57 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00775 855894896916d9542639348cef20cdde 272 PANTHER PTHR30222:SF1 12 266 3.7E-81 T 23-04-2016 RD1_RS00775 855894896916d9542639348cef20cdde 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 253 3.2E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS00775 855894896916d9542639348cef20cdde 272 PANTHER PTHR30222 12 266 3.7E-81 T 23-04-2016 RD1_RS00775 855894896916d9542639348cef20cdde 272 SUPERFAMILY SSF161098 4 259 2.34E-54 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13420 ad172e8e95cf2582e39eb997e2a66464 230 PANTHER PTHR30183 1 227 2.1E-70 T 23-04-2016 RD1_RS13420 ad172e8e95cf2582e39eb997e2a66464 230 Gene3D G3DSA:1.10.3720.10 6 224 4.2E-38 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13420 ad172e8e95cf2582e39eb997e2a66464 230 SUPERFAMILY SSF161098 3 219 6.8E-45 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13420 ad172e8e95cf2582e39eb997e2a66464 230 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 27 224 1.2E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS13420 ad172e8e95cf2582e39eb997e2a66464 230 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 13 222 2.4E-64 T 23-04-2016 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 RD1_RS16280 07cc41a244990901606e1ddb00e0ff43 244 SUPERFAMILY SSF53335 26 190 3.13E-17 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS16280 07cc41a244990901606e1ddb00e0ff43 244 Gene3D G3DSA:3.40.50.150 80 204 4.8E-11 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS10610 a1d5bdb74c40468c9e3025a194dd0665 154 SUPERFAMILY SSF46626 2 136 2.12E-21 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS10610 a1d5bdb74c40468c9e3025a194dd0665 154 PANTHER PTHR35008 38 138 2.9E-17 T 23-04-2016 RD1_RS10610 a1d5bdb74c40468c9e3025a194dd0665 154 Gene3D G3DSA:1.10.760.10 31 140 1.6E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS10610 a1d5bdb74c40468c9e3025a194dd0665 154 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 36 129 9.9E-11 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS05080 2db562845810af168ce25ade87c7d252 249 Pfam PF01925 Sulfite exporter TauE/SafE 12 241 1.9E-21 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RD1_RS07695 dd0a49c103c7486103b85b706c4b0060 265 Pfam PF07179 SseB protein N-terminal domain 12 121 7.0E-7 T 23-04-2016 IPR009839 SseB protein N-terminal domain RD1_RS17865 f2014ead67efa5f5a91cf50ae4a32ce6 395 Gene3D G3DSA:3.40.710.10 94 382 4.2E-43 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS17865 f2014ead67efa5f5a91cf50ae4a32ce6 395 Pfam PF00144 Beta-lactamase 94 377 4.8E-30 T 23-04-2016 IPR001466 Beta-lactamase-related RD1_RS17865 f2014ead67efa5f5a91cf50ae4a32ce6 395 PANTHER PTHR22935:SF2 94 384 1.9E-65 T 23-04-2016 RD1_RS17865 f2014ead67efa5f5a91cf50ae4a32ce6 395 SUPERFAMILY SSF56601 15 385 6.12E-82 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RD1_RS17865 f2014ead67efa5f5a91cf50ae4a32ce6 395 PANTHER PTHR22935 94 384 1.9E-65 T 23-04-2016 RD1_RS13860 c75a0b83cb29847741f52063bcdb7afd 1314 SUPERFAMILY SSF51445 618 747 1.65E-7 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RD1_RS13860 c75a0b83cb29847741f52063bcdb7afd 1314 SUPERFAMILY SSF51445 442 558 1.65E-7 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RD1_RS13860 c75a0b83cb29847741f52063bcdb7afd 1314 Pfam PF13550 Putative phage tail protein 805 968 5.5E-33 T 23-04-2016 IPR032876 Tip attachment protein J RD1_RS13860 c75a0b83cb29847741f52063bcdb7afd 1314 Pfam PF13547 GTA TIM-barrel-like domain 449 745 1.6E-149 T 23-04-2016 IPR025195 GTA TIM-barrel-like domain RD1_RS13200 a33b0dc502160158b536224fc6f1517b 301 Pfam PF05035 2-keto-3-deoxy-galactonokinase 13 292 1.1E-94 T 23-04-2016 IPR007729 2-keto-3-deoxy-galactonokinase GO:0008671|GO:0034194 KEGG: 00052+2.7.1.58|MetaCyc: PWY-7130|UniPathway: UPA00081 RD1_RS08400 7fb2e9062fa3be2bf164260ce588a53b 96 SUPERFAMILY SSF55718 6 95 2.59E-22 T 23-04-2016 IPR003033 SCP2 sterol-binding domain RD1_RS08400 7fb2e9062fa3be2bf164260ce588a53b 96 Gene3D G3DSA:3.30.1050.10 3 94 8.7E-20 T 23-04-2016 IPR003033 SCP2 sterol-binding domain RD1_RS08400 7fb2e9062fa3be2bf164260ce588a53b 96 Pfam PF02036 SCP-2 sterol transfer family 19 95 3.3E-17 T 23-04-2016 IPR003033 SCP2 sterol-binding domain RD1_RS08190 e08eb095a59ff497cbeb7e4824c4ed22 230 Pfam PF00106 short chain dehydrogenase 3 181 2.0E-17 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS08190 e08eb095a59ff497cbeb7e4824c4ed22 230 Gene3D G3DSA:3.40.50.720 3 198 1.8E-26 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS08190 e08eb095a59ff497cbeb7e4824c4ed22 230 SUPERFAMILY SSF51735 3 199 6.9E-27 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS06555 c3f4750b05d11edb1d4cff91636822c5 212 Pfam PF01810 LysE type translocator 16 204 3.5E-23 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS06555 c3f4750b05d11edb1d4cff91636822c5 212 PANTHER PTHR30086 1 211 1.6E-30 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS05535 e1c97c5c76de067b7ab84fdd607a1b2b 150 PANTHER PTHR11241 16 148 6.4E-48 T 23-04-2016 RD1_RS05535 e1c97c5c76de067b7ab84fdd607a1b2b 150 Pfam PF00692 dUTPase 16 148 9.6E-31 T 23-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 RD1_RS05535 e1c97c5c76de067b7ab84fdd607a1b2b 150 TIGRFAM TIGR00576 dut: dUTP diphosphatase 14 148 2.5E-52 T 23-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 RD1_RS05535 e1c97c5c76de067b7ab84fdd607a1b2b 150 Gene3D G3DSA:2.70.40.10 14 148 7.7E-53 T 23-04-2016 IPR029054 dUTPase-like RD1_RS05535 e1c97c5c76de067b7ab84fdd607a1b2b 150 SUPERFAMILY SSF51283 14 148 4.32E-49 T 23-04-2016 IPR029054 dUTPase-like RD1_RS05535 e1c97c5c76de067b7ab84fdd607a1b2b 150 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 2 149 32.743 T 23-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 RD1_RS07105 d62b0c21dd6d92dbefaef1525729133f 294 SUPERFAMILY SSF143631 9 239 3.01E-65 T 23-04-2016 IPR003374 ApbE-like domain RD1_RS07105 d62b0c21dd6d92dbefaef1525729133f 294 Gene3D G3DSA:3.10.520.10 9 235 1.5E-58 T 23-04-2016 IPR007183 Uncharacterised protein family UPF0280 RD1_RS07105 d62b0c21dd6d92dbefaef1525729133f 294 PIRSF PIRSF006421 1 270 2.7E-70 T 23-04-2016 IPR007183 Uncharacterised protein family UPF0280 RD1_RS17495 d8de5c916d75f5b740db6cf486dabf3d 122 Gene3D G3DSA:3.30.420.180 2 118 3.1E-21 T 23-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 RD1_RS17495 d8de5c916d75f5b740db6cf486dabf3d 122 SUPERFAMILY SSF159664 1 119 3.14E-24 T 23-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 RD1_RS17495 d8de5c916d75f5b740db6cf486dabf3d 122 Pfam PF01890 Cobalamin synthesis G C-terminus 2 117 7.5E-19 T 23-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 RD1_RS13900 2236304d7d87584ade4f500261f04564 136 Pfam PF11367 Protein of unknown function (DUF3168) 12 129 3.5E-25 T 23-04-2016 IPR021508 Protein of unknown function DUF3168 RD1_RS14620 b5c50fdfa1b81db76a58b728ae60f9e9 259 PANTHER PTHR21181 10 135 1.3E-15 T 23-04-2016 RD1_RS14620 b5c50fdfa1b81db76a58b728ae60f9e9 259 Pfam PF00494 Squalene/phytoene synthase 16 182 3.5E-20 T 23-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 RD1_RS14620 b5c50fdfa1b81db76a58b728ae60f9e9 259 SUPERFAMILY SSF48576 6 258 3.16E-35 T 23-04-2016 IPR008949 Isoprenoid synthase domain RD1_RS15020 b8409a122bb8d65ce1216d5c91eaec90 101 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 101 20.191 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RD1_RS15020 b8409a122bb8d65ce1216d5c91eaec90 101 PANTHER PTHR11434 4 101 3.0E-45 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RD1_RS15020 b8409a122bb8d65ce1216d5c91eaec90 101 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 7 96 3.7E-25 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RD1_RS09085 5aba1e00fcd3d980bab87aaa5f60692e 152 PANTHER PTHR28055:SF1 1 152 6.5E-42 T 23-04-2016 RD1_RS09085 5aba1e00fcd3d980bab87aaa5f60692e 152 Pfam PF09424 Yqey-like protein 5 151 1.6E-49 T 23-04-2016 IPR019004 Uncharacterised domain YOR215C, mitochondrial RD1_RS09085 5aba1e00fcd3d980bab87aaa5f60692e 152 Gene3D G3DSA:1.10.1510.10 1 95 2.2E-29 T 23-04-2016 RD1_RS09085 5aba1e00fcd3d980bab87aaa5f60692e 152 PANTHER PTHR28055 1 152 6.5E-42 T 23-04-2016 RD1_RS09085 5aba1e00fcd3d980bab87aaa5f60692e 152 SUPERFAMILY SSF89095 1 152 5.23E-39 T 23-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 RD1_RS09085 5aba1e00fcd3d980bab87aaa5f60692e 152 Gene3D G3DSA:1.10.10.410 96 152 3.1E-23 T 23-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal RD1_RS03205 c569d4850a4f3fc9e6e59af479c5e559 243 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 184 5.4E-4 T 23-04-2016 RD1_RS03205 c569d4850a4f3fc9e6e59af479c5e559 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 5.0E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03205 c569d4850a4f3fc9e6e59af479c5e559 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 5.0E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03205 c569d4850a4f3fc9e6e59af479c5e559 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 5.0E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03205 c569d4850a4f3fc9e6e59af479c5e559 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 5.0E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03205 c569d4850a4f3fc9e6e59af479c5e559 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 5.0E-15 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03205 c569d4850a4f3fc9e6e59af479c5e559 243 PANTHER PTHR24322 148 180 1.8E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03205 c569d4850a4f3fc9e6e59af479c5e559 243 PANTHER PTHR24322 11 132 1.8E-28 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03205 c569d4850a4f3fc9e6e59af479c5e559 243 SUPERFAMILY SSF51735 1 241 5.68E-57 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS03205 c569d4850a4f3fc9e6e59af479c5e559 243 Pfam PF00106 short chain dehydrogenase 11 188 5.6E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RD1_RS03205 c569d4850a4f3fc9e6e59af479c5e559 243 Gene3D G3DSA:3.40.50.720 6 241 1.8E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS16585 3f8c754761e05bc72194293c660ad0e0 264 Pfam PF09359 VTC domain 25 228 2.4E-14 T 23-04-2016 IPR018966 VTC domain RD1_RS01655 3def0cf460fd4451299f94a6fe2e0fea 276 PANTHER PTHR33608:SF2 2 275 2.0E-46 T 23-04-2016 RD1_RS01655 3def0cf460fd4451299f94a6fe2e0fea 276 PANTHER PTHR33608 2 275 2.0E-46 T 23-04-2016 RD1_RS01655 3def0cf460fd4451299f94a6fe2e0fea 276 Pfam PF01882 Protein of unknown function DUF58 29 116 9.9E-12 T 23-04-2016 IPR002881 Domain of unknown function DUF58 RD1_RS07125 8a84ab71f6bfeb9f0c297fac15dc90e0 192 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 28 175 1.1E-20 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS04250 9684a76a39614aefa7060459c681a38e 457 SUPERFAMILY SSF111352 32 427 1.02E-30 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RD1_RS04250 9684a76a39614aefa7060459c681a38e 457 Pfam PF00909 Ammonium Transporter Family 32 439 4.1E-37 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RD1_RS04250 9684a76a39614aefa7060459c681a38e 457 Gene3D G3DSA:1.10.3430.10 32 427 2.2E-39 T 23-04-2016 IPR029020 Ammonium/urea transporter RD1_RS10040 a814729aae457854c8cc282e7e3a2c92 441 PANTHER PTHR33362 13 440 4.8E-73 T 23-04-2016 RD1_RS10040 a814729aae457854c8cc282e7e3a2c92 441 PANTHER PTHR33362:SF5 13 440 4.8E-73 T 23-04-2016 RD1_RS10040 a814729aae457854c8cc282e7e3a2c92 441 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 13 429 4.3E-69 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RD1_RS10040 a814729aae457854c8cc282e7e3a2c92 441 PIRSF PIRSF006066 5 441 2.4E-66 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RD1_RS15480 7717013f96ebfa3ca1af3654832176bd 225 SUPERFAMILY SSF55144 2 222 1.74E-60 T 23-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase RD1_RS15480 7717013f96ebfa3ca1af3654832176bd 225 Gene3D G3DSA:3.90.1140.10 3 223 5.4E-79 T 23-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase RD1_RS15480 7717013f96ebfa3ca1af3654832176bd 225 Pfam PF08975 Domain of unknown function (DUF1868) 19 128 3.5E-39 T 23-04-2016 IPR015069 Domain of unknown function DUF1868 RD1_RS08740 b237c56cec34b06d47beaf49f2ac0174 188 Pfam PF07879 PHB/PHA accumulation regulator DNA-binding domain 9 68 9.7E-27 T 23-04-2016 IPR012909 PHA accumulation regulator DNA-binding, N-terminal RD1_RS08740 b237c56cec34b06d47beaf49f2ac0174 188 Pfam PF05233 PHB accumulation regulatory domain 73 111 2.1E-9 T 23-04-2016 IPR007897 PHB accumulation regulatory RD1_RS08740 b237c56cec34b06d47beaf49f2ac0174 188 TIGRFAM TIGR01848 PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR 9 114 7.6E-44 T 23-04-2016 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR RD1_RS10905 54e62254ac11f1d3160ae8d5a291a043 206 PANTHER PTHR11776 8 191 3.0E-54 T 23-04-2016 RD1_RS10905 54e62254ac11f1d3160ae8d5a291a043 206 SUPERFAMILY SSF53271 29 196 1.26E-26 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS10905 54e62254ac11f1d3160ae8d5a291a043 206 PANTHER PTHR11776:SF0 8 191 3.0E-54 T 23-04-2016 RD1_RS10905 54e62254ac11f1d3160ae8d5a291a043 206 Gene3D G3DSA:3.40.50.2020 19 164 3.9E-35 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RD1_RS10905 54e62254ac11f1d3160ae8d5a291a043 206 Pfam PF00156 Phosphoribosyl transferase domain 40 186 7.4E-13 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RD1_RS05225 4e44f87aa51f258bbb92e2c46a6947b3 209 SUPERFAMILY SSF51735 1 207 1.82E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05225 4e44f87aa51f258bbb92e2c46a6947b3 209 PANTHER PTHR15020 1 207 3.8E-39 T 23-04-2016 RD1_RS05225 4e44f87aa51f258bbb92e2c46a6947b3 209 Gene3D G3DSA:3.40.50.720 1 208 4.0E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS05225 4e44f87aa51f258bbb92e2c46a6947b3 209 Pfam PF13460 NAD(P)H-binding 7 197 5.1E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS17895 ea3a27c88e7558aec3b5cedb343cc61d 116 Pfam PF06305 Protein of unknown function (DUF1049) 24 94 3.8E-7 T 23-04-2016 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 RD1_RS02105 d6e88e2c8e544a2a1984878e6ef70220 985 Pfam PF12705 PD-(D/E)XK nuclease superfamily 715 938 3.2E-19 T 23-04-2016 RD1_RS02105 d6e88e2c8e544a2a1984878e6ef70220 985 TIGRFAM TIGR02786 addB_alphas: double-strand break repair protein AddB 9 974 5.0E-281 T 23-04-2016 IPR014153 Double-strand break repair protein AddB RD1_RS02105 d6e88e2c8e544a2a1984878e6ef70220 985 SUPERFAMILY SSF52540 313 666 1.91E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS05980 7920218c76bb557b657fd84d69da6e20 405 PANTHER PTHR32027:SF0 53 361 7.2E-36 T 23-04-2016 RD1_RS05980 7920218c76bb557b657fd84d69da6e20 405 Gene3D G3DSA:3.20.20.140 59 361 2.9E-66 T 23-04-2016 RD1_RS05980 7920218c76bb557b657fd84d69da6e20 405 SUPERFAMILY SSF51556 59 363 3.05E-56 T 23-04-2016 IPR032466 Metal-dependent hydrolase RD1_RS05980 7920218c76bb557b657fd84d69da6e20 405 Pfam PF07969 Amidohydrolase family 165 363 5.7E-12 T 23-04-2016 IPR013108 Amidohydrolase 3 RD1_RS05980 7920218c76bb557b657fd84d69da6e20 405 PANTHER PTHR32027 53 361 7.2E-36 T 23-04-2016 RD1_RS11275 b22cf99e61832e07a36b0301b28c3a39 242 SUPERFAMILY SSF51206 8 141 8.9E-21 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RD1_RS11275 b22cf99e61832e07a36b0301b28c3a39 242 Pfam PF00027 Cyclic nucleotide-binding domain 35 120 1.9E-10 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RD1_RS11275 b22cf99e61832e07a36b0301b28c3a39 242 SUPERFAMILY SSF46785 155 230 3.49E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11275 b22cf99e61832e07a36b0301b28c3a39 242 PANTHER PTHR24567 39 242 2.0E-19 T 23-04-2016 RD1_RS11275 b22cf99e61832e07a36b0301b28c3a39 242 PANTHER PTHR24567:SF28 39 242 2.0E-19 T 23-04-2016 RD1_RS11275 b22cf99e61832e07a36b0301b28c3a39 242 Gene3D G3DSA:1.10.10.10 155 231 4.7E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS11275 b22cf99e61832e07a36b0301b28c3a39 242 SMART SM00419 173 221 6.9E-5 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RD1_RS11275 b22cf99e61832e07a36b0301b28c3a39 242 Pfam PF13545 Crp-like helix-turn-helix domain 156 227 5.6E-11 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RD1_RS11275 b22cf99e61832e07a36b0301b28c3a39 242 Gene3D G3DSA:2.60.120.10 10 122 9.2E-13 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RD1_RS05610 9ea9baa76a9c8ba65e5045e79628e199 267 SUPERFAMILY SSF53474 36 192 1.79E-26 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS05610 9ea9baa76a9c8ba65e5045e79628e199 267 SUPERFAMILY SSF53474 226 263 1.79E-26 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS05610 9ea9baa76a9c8ba65e5045e79628e199 267 Pfam PF02230 Phospholipase/Carboxylesterase 121 188 4.1E-8 T 23-04-2016 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 RD1_RS05610 9ea9baa76a9c8ba65e5045e79628e199 267 Gene3D G3DSA:3.40.50.1820 6 190 1.8E-28 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RD1_RS05610 9ea9baa76a9c8ba65e5045e79628e199 267 PANTHER PTHR38050 29 191 3.9E-16 T 23-04-2016 RD1_RS13085 2c6cecfbb4266ab59290acd3205c09c3 343 PANTHER PTHR11795:SF379 93 339 3.6E-73 T 23-04-2016 RD1_RS13085 2c6cecfbb4266ab59290acd3205c09c3 343 PANTHER PTHR11795:SF379 1 56 3.6E-73 T 23-04-2016 RD1_RS13085 2c6cecfbb4266ab59290acd3205c09c3 343 PANTHER PTHR11795 93 339 3.6E-73 T 23-04-2016 RD1_RS13085 2c6cecfbb4266ab59290acd3205c09c3 343 PANTHER PTHR11795 1 56 3.6E-73 T 23-04-2016 RD1_RS13085 2c6cecfbb4266ab59290acd3205c09c3 343 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 327 2.7E-35 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS05335 6cff1feed3ff03c82343bff8b77af535 325 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 15 259 1.3E-40 T 23-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 RD1_RS05335 6cff1feed3ff03c82343bff8b77af535 325 PANTHER PTHR32308:SF2 209 323 4.1E-99 T 23-04-2016 RD1_RS05335 6cff1feed3ff03c82343bff8b77af535 325 PANTHER PTHR32308:SF2 5 187 4.1E-99 T 23-04-2016 RD1_RS05335 6cff1feed3ff03c82343bff8b77af535 325 PANTHER PTHR32308 209 323 4.1E-99 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like RD1_RS05335 6cff1feed3ff03c82343bff8b77af535 325 PANTHER PTHR32308 5 187 4.1E-99 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like RD1_RS05335 6cff1feed3ff03c82343bff8b77af535 325 Gene3D G3DSA:3.20.20.60 11 268 1.0E-75 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS05335 6cff1feed3ff03c82343bff8b77af535 325 SUPERFAMILY SSF51621 12 268 1.78E-61 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RD1_RS05335 6cff1feed3ff03c82343bff8b77af535 325 PIRSF PIRSF015582 3 325 1.4E-87 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like RD1_RS05810 602420f07607b45d0c70dfea8b13241a 155 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 3 146 2.2E-7 T 23-04-2016 IPR019587 Polyketide cyclase/dehydrase RD1_RS05810 602420f07607b45d0c70dfea8b13241a 155 Gene3D G3DSA:3.30.530.20 1 140 3.4E-7 T 23-04-2016 IPR023393 START-like domain RD1_RS05810 602420f07607b45d0c70dfea8b13241a 155 SUPERFAMILY SSF55961 1 132 4.07E-14 T 23-04-2016 RD1_RS02045 eb33e854a2e06644f1dc60dd53332503 185 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 181 16.501 T 23-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RD1_RS02045 eb33e854a2e06644f1dc60dd53332503 185 SUPERFAMILY SSF52540 2 179 9.95E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02045 eb33e854a2e06644f1dc60dd53332503 185 Gene3D G3DSA:3.40.50.300 1 180 1.7E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS02045 eb33e854a2e06644f1dc60dd53332503 185 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 2 167 6.5E-27 T 23-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RD1_RS02045 eb33e854a2e06644f1dc60dd53332503 185 Pfam PF01121 Dephospho-CoA kinase 2 163 2.3E-32 T 23-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RD1_RS02045 eb33e854a2e06644f1dc60dd53332503 185 PANTHER PTHR10695 1 180 2.1E-33 T 23-04-2016 RD1_RS16095 b99aef9698bb685e9bbf7dc024b9ee7f 166 Pfam PF10722 Putative bacterial sensory transduction regulator 14 142 5.6E-31 T 23-04-2016 IPR019660 Putative sensory transduction regulator YbjN RD1_RS12270 e5824effba8e407d4024551b40f16d70 269 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 76 131 3.1E-13 T 23-04-2016 IPR018637 Domain of unknown function DUF2059 RD1_RS03835 0372870b5839b727bfdbdc110295e272 188 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 24 147 1.2E-28 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS03835 0372870b5839b727bfdbdc110295e272 188 PANTHER PTHR35011 7 173 2.2E-27 T 23-04-2016 RD1_RS14385 79a39e9680d64bf8ad154555cc9195ac 133 Pfam PF07386 Protein of unknown function (DUF1499) 47 132 1.0E-10 T 23-04-2016 IPR010865 Protein of unknown function DUF1499 RD1_RS10520 6dfb3dfd5d6cd49f62434e1bf3620fc4 117 Pfam PF14248 Domain of unknown function (DUF4345) 7 112 1.1E-7 T 23-04-2016 IPR025597 Protein of unknown function DUF4345 RD1_RS16570 a0862091d87e3531cb8d1997b1398dc0 409 Gene3D G3DSA:2.60.120.580 213 281 5.3E-67 T 23-04-2016 RD1_RS16570 a0862091d87e3531cb8d1997b1398dc0 409 Gene3D G3DSA:2.60.120.580 10 94 5.3E-67 T 23-04-2016 RD1_RS16570 a0862091d87e3531cb8d1997b1398dc0 409 Gene3D G3DSA:2.60.120.580 147 164 5.3E-67 T 23-04-2016 RD1_RS16570 a0862091d87e3531cb8d1997b1398dc0 409 Pfam PF03069 Acetamidase/Formamidase family 8 383 9.7E-177 T 23-04-2016 IPR004304 Acetamidase/Formamidase GO:0016811 RD1_RS16570 a0862091d87e3531cb8d1997b1398dc0 409 PANTHER PTHR31891:SF1 1 405 6.0E-236 T 23-04-2016 RD1_RS16570 a0862091d87e3531cb8d1997b1398dc0 409 PANTHER PTHR31891 1 405 6.0E-236 T 23-04-2016 RD1_RS16570 a0862091d87e3531cb8d1997b1398dc0 409 SUPERFAMILY SSF141130 213 383 5.75E-79 T 23-04-2016 RD1_RS16570 a0862091d87e3531cb8d1997b1398dc0 409 SUPERFAMILY SSF141130 16 164 5.75E-79 T 23-04-2016 RD1_RS18845 d096135eb42e00f99a4cada9b2f1df37 132 Pfam PF09928 Predicted small integral membrane protein (DUF2160) 44 132 1.5E-34 T 23-04-2016 IPR018678 Protein of unknown function DUF2160, transmembrane RD1_RS12040 2713da184670fd0a5b038b0c2947e22b 488 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 29 73 2.1E-8 T 23-04-2016 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal RD1_RS12040 2713da184670fd0a5b038b0c2947e22b 488 SUPERFAMILY SSF53300 418 469 1.74E-14 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS12040 2713da184670fd0a5b038b0c2947e22b 488 SUPERFAMILY SSF53300 300 385 1.74E-14 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS12040 2713da184670fd0a5b038b0c2947e22b 488 SUPERFAMILY SSF53300 134 208 1.74E-14 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS12040 2713da184670fd0a5b038b0c2947e22b 488 Gene3D G3DSA:3.40.50.410 302 388 1.4E-12 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS12040 2713da184670fd0a5b038b0c2947e22b 488 Gene3D G3DSA:3.40.50.410 153 208 1.4E-12 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS12040 2713da184670fd0a5b038b0c2947e22b 488 Gene3D G3DSA:3.40.50.410 420 481 1.4E-12 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS10475 8dfe38f56f67d34e2b7ef7e9359d0c30 250 PANTHER PTHR31272:SF4 14 241 3.8E-76 T 23-04-2016 RD1_RS10475 8dfe38f56f67d34e2b7ef7e9359d0c30 250 PANTHER PTHR31272 14 241 3.8E-76 T 23-04-2016 RD1_RS10475 8dfe38f56f67d34e2b7ef7e9359d0c30 250 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 19 228 5.4E-60 T 23-04-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 RD1_RS12230 93465a73677b3a565403e613ba5f1fb5 198 Pfam PF10090 Histidine phosphotransferase 25 196 9.6E-49 T 23-04-2016 IPR018762 Histidine phosphotransferase RD1_RS00210 6fcd4c45e785f4dc8b9a14160140ffa8 320 Pfam PF13609 Gram-negative porin 7 305 1.1E-37 T 23-04-2016 RD1_RS00210 6fcd4c45e785f4dc8b9a14160140ffa8 320 SUPERFAMILY SSF56935 22 320 2.78E-24 T 23-04-2016 RD1_RS00210 6fcd4c45e785f4dc8b9a14160140ffa8 320 Gene3D G3DSA:2.40.160.10 21 320 1.6E-40 T 23-04-2016 IPR023614 Porin domain RD1_RS14435 05996da8495ec8a02c18ae9b6b3d560f 137 PANTHER PTHR33202 5 132 1.3E-37 T 23-04-2016 RD1_RS14435 05996da8495ec8a02c18ae9b6b3d560f 137 SUPERFAMILY SSF46785 5 132 2.89E-37 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS14435 05996da8495ec8a02c18ae9b6b3d560f 137 Gene3D G3DSA:1.10.10.10 4 81 1.8E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS14435 05996da8495ec8a02c18ae9b6b3d560f 137 Pfam PF01475 Ferric uptake regulator family 12 130 1.2E-39 T 23-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RD1_RS02150 b6fa0cf6dc7a2441ce530a1544eee5ab 329 PANTHER PTHR13778 100 261 3.3E-15 T 23-04-2016 RD1_RS02150 b6fa0cf6dc7a2441ce530a1544eee5ab 329 Pfam PF01501 Glycosyl transferase family 8 25 259 6.1E-57 T 23-04-2016 IPR002495 Glycosyl transferase, family 8 GO:0016757 RD1_RS02150 b6fa0cf6dc7a2441ce530a1544eee5ab 329 Gene3D G3DSA:3.90.550.10 24 275 5.5E-41 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS02150 b6fa0cf6dc7a2441ce530a1544eee5ab 329 SUPERFAMILY SSF53448 25 276 1.31E-50 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RD1_RS02150 b6fa0cf6dc7a2441ce530a1544eee5ab 329 PANTHER PTHR13778:SF1 100 261 3.3E-15 T 23-04-2016 RD1_RS09500 c6b0018f3fb5d7cb4be7cc993359214a 126 Gene3D G3DSA:1.10.760.10 13 99 5.3E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS09500 c6b0018f3fb5d7cb4be7cc993359214a 126 SUPERFAMILY SSF46626 10 98 1.51E-11 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS02060 eef8cc97c941907e726c3aa1ff6e930c 163 PANTHER PTHR35335 1 114 5.8E-28 T 23-04-2016 RD1_RS02060 eef8cc97c941907e726c3aa1ff6e930c 163 Pfam PF04186 FxsA cytoplasmic membrane protein 6 112 4.0E-33 T 23-04-2016 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 RD1_RS02060 eef8cc97c941907e726c3aa1ff6e930c 163 PANTHER PTHR35335:SF1 1 114 5.8E-28 T 23-04-2016 RD1_RS05010 16eef670acd1fd4f555a30fee91289a8 382 Gene3D G3DSA:3.40.50.2000 204 354 1.7E-16 T 23-04-2016 RD1_RS05010 16eef670acd1fd4f555a30fee91289a8 382 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 270 360 3.7E-7 T 23-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RD1_RS05010 16eef670acd1fd4f555a30fee91289a8 382 SUPERFAMILY SSF53756 6 374 2.54E-20 T 23-04-2016 RD1_RS10480 496c9af2654138f1c7c2e10a8b31a140 296 PANTHER PTHR11627:SF20 17 183 1.2E-23 T 23-04-2016 RD1_RS10480 496c9af2654138f1c7c2e10a8b31a140 296 SUPERFAMILY SSF51569 3 296 3.35E-91 T 23-04-2016 RD1_RS10480 496c9af2654138f1c7c2e10a8b31a140 296 Gene3D G3DSA:3.20.20.70 6 295 7.9E-94 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RD1_RS10480 496c9af2654138f1c7c2e10a8b31a140 296 Pfam PF00274 Fructose-bisphosphate aldolase class-I 12 190 2.5E-11 T 23-04-2016 IPR000741 Fructose-bisphosphate aldolase, class-I GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RD1_RS10480 496c9af2654138f1c7c2e10a8b31a140 296 PANTHER PTHR11627 17 183 1.2E-23 T 23-04-2016 RD1_RS20455 38851cd252667c1965dfbf32ed60e6d4 502 SUPERFAMILY SSF141571 300 414 1.67E-16 T 23-04-2016 RD1_RS20455 38851cd252667c1965dfbf32ed60e6d4 502 Pfam PF00805 Pentapeptide repeats (8 copies) 316 352 1.5E-6 T 23-04-2016 IPR001646 Pentapeptide repeat RD1_RS13090 c7bb612ab55f20c6cffe890d5784886b 399 PANTHER PTHR30482 184 324 2.3E-57 T 23-04-2016 RD1_RS13090 c7bb612ab55f20c6cffe890d5784886b 399 PANTHER PTHR30482 45 162 2.3E-57 T 23-04-2016 RD1_RS13090 c7bb612ab55f20c6cffe890d5784886b 399 PANTHER PTHR30482 349 371 2.3E-57 T 23-04-2016 RD1_RS13090 c7bb612ab55f20c6cffe890d5784886b 399 PANTHER PTHR30482:SF2 184 324 2.3E-57 T 23-04-2016 RD1_RS13090 c7bb612ab55f20c6cffe890d5784886b 399 PANTHER PTHR30482:SF2 45 162 2.3E-57 T 23-04-2016 RD1_RS13090 c7bb612ab55f20c6cffe890d5784886b 399 PANTHER PTHR30482:SF2 349 371 2.3E-57 T 23-04-2016 RD1_RS13090 c7bb612ab55f20c6cffe890d5784886b 399 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 320 1.3E-33 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS00875 b265c0c1b18837e3935c935db553d91d 246 SUPERFAMILY SSF52833 89 240 5.71E-22 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS00875 b265c0c1b18837e3935c935db553d91d 246 Gene3D G3DSA:3.40.30.10 90 235 8.9E-24 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS00875 b265c0c1b18837e3935c935db553d91d 246 Pfam PF01323 DSBA-like thioredoxin domain 92 232 2.9E-13 T 23-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 RD1_RS00875 b265c0c1b18837e3935c935db553d91d 246 PANTHER PTHR13887 92 242 2.3E-18 T 23-04-2016 RD1_RS18750 9938a4d11c40a6874107f32172bb86e3 227 Pfam PF06299 Protein of unknown function (DUF1045) 54 209 3.8E-54 T 23-04-2016 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532|UniPathway: UPA00087 RD1_RS18750 9938a4d11c40a6874107f32172bb86e3 227 PIRSF PIRSF033328 4 217 2.2E-51 T 23-04-2016 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532|UniPathway: UPA00087 RD1_RS04020 785c44c759d8139094fd3739b3b87aaa 299 SUPERFAMILY SSF53300 97 258 3.81E-13 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS04020 785c44c759d8139094fd3739b3b87aaa 299 Gene3D G3DSA:3.40.50.410 97 254 8.3E-4 T 23-04-2016 IPR002035 von Willebrand factor, type A RD1_RS04030 06fa110e3d9f31262fa0cc9368472df5 396 Pfam PF13584 Oxygen tolerance 30 266 5.4E-24 T 23-04-2016 IPR025738 Aerotolerance-related protein BatD RD1_RS02145 0249b3926d0a75f465dbefbd1ea4d025 195 SUPERFAMILY SSF109604 2 191 2.58E-62 T 23-04-2016 RD1_RS02145 0249b3926d0a75f465dbefbd1ea4d025 195 Gene3D G3DSA:1.10.3210.10 2 193 1.8E-69 T 23-04-2016 IPR006674 HD domain RD1_RS02145 0249b3926d0a75f465dbefbd1ea4d025 195 SMART SM00471 47 149 0.0017 T 23-04-2016 IPR003607 HD/PDEase domain RD1_RS02145 0249b3926d0a75f465dbefbd1ea4d025 195 Pfam PF01966 HD domain 51 93 2.7E-5 T 23-04-2016 IPR006674 HD domain RD1_RS11350 964f8bdee4d022651285fa100a73f3f5 89 Pfam PF07498 Rho termination factor, N-terminal domain 58 84 1.9E-5 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RD1_RS00355 d86f7fd2c4b23623fa8ab8db526015b0 186 Gene3D G3DSA:3.40.50.10610 19 120 8.5E-7 T 23-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component RD1_RS00355 d86f7fd2c4b23623fa8ab8db526015b0 186 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 24 180 9.8E-18 T 23-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component RD1_RS00355 d86f7fd2c4b23623fa8ab8db526015b0 186 SUPERFAMILY SSF159594 29 172 3.14E-12 T 23-04-2016 RD1_RS17155 3340e25517bb1c5d67f0dcec20e346b2 159 Pfam PF04945 YHS domain 47 92 3.7E-8 T 23-04-2016 IPR007029 YHS domain RD1_RS16145 6002b25aa904b5d76fd35fdcc0a98bca 74 Pfam PF04325 Protein of unknown function (DUF465) 22 65 8.4E-15 T 23-04-2016 IPR007420 Protein of unknown function DUF465 RD1_RS04805 0b680dbcc261d88de92951df8517cd44 258 Pfam PF06242 Protein of unknown function (DUF1013) 34 171 1.6E-63 T 23-04-2016 IPR010421 Protein of unknown function DUF1013 RD1_RS14615 cacdcb0b0dc19565e2da34146b25aec4 403 PANTHER PTHR23534 8 397 2.1E-60 T 23-04-2016 RD1_RS14615 cacdcb0b0dc19565e2da34146b25aec4 403 Gene3D G3DSA:1.20.1250.20 24 195 3.1E-7 T 23-04-2016 RD1_RS14615 cacdcb0b0dc19565e2da34146b25aec4 403 Gene3D G3DSA:1.20.1250.20 214 398 3.4E-15 T 23-04-2016 RD1_RS14615 cacdcb0b0dc19565e2da34146b25aec4 403 SUPERFAMILY SSF103473 8 400 1.29E-32 T 23-04-2016 IPR020846 Major facilitator superfamily domain RD1_RS14615 cacdcb0b0dc19565e2da34146b25aec4 403 Pfam PF07690 Major Facilitator Superfamily 17 247 2.8E-12 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RD1_RS19270 467c7ea9ad975669cdfbe07150c39990 218 Pfam PF13699 Domain of unknown function (DUF4157) 113 178 1.9E-11 T 23-04-2016 IPR025295 Domain of unknown function DUF4157 RD1_RS14150 43a7764d60f52454de86b4279f6c2c26 326 PANTHER PTHR32196:SF35 8 325 1.2E-77 T 23-04-2016 RD1_RS14150 43a7764d60f52454de86b4279f6c2c26 326 Pfam PF02653 Branched-chain amino acid transport system / permease component 36 304 4.0E-47 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS14150 43a7764d60f52454de86b4279f6c2c26 326 PANTHER PTHR32196 8 325 1.2E-77 T 23-04-2016 RD1_RS15240 ebf9a6ccbfe5af513794222e32fcfaab 427 Pfam PF11902 Protein of unknown function (DUF3422) 6 425 1.5E-154 T 23-04-2016 IPR021830 Protein of unknown function DUF3422 RD1_RS12565 3c30dce94fb923a3b799d5f6f5232314 238 PANTHER PTHR31876:SF1 16 227 1.2E-55 T 23-04-2016 RD1_RS12565 3c30dce94fb923a3b799d5f6f5232314 238 PANTHER PTHR31876 16 227 1.2E-55 T 23-04-2016 RD1_RS12565 3c30dce94fb923a3b799d5f6f5232314 238 Pfam PF04367 Protein of unknown function (DUF502) 86 193 5.6E-34 T 23-04-2016 IPR007462 Protein of unknown function DUF502 RD1_RS05135 bcf0c4ef0a857806463ed7adac5dbf68 196 Gene3D G3DSA:2.40.440.10 50 191 1.1E-25 T 23-04-2016 RD1_RS05135 bcf0c4ef0a857806463ed7adac5dbf68 196 PANTHER PTHR30582 43 195 2.8E-31 T 23-04-2016 RD1_RS05135 bcf0c4ef0a857806463ed7adac5dbf68 196 PANTHER PTHR30582:SF1 43 195 2.8E-31 T 23-04-2016 RD1_RS05135 bcf0c4ef0a857806463ed7adac5dbf68 196 SUPERFAMILY SSF141523 128 191 1.18E-26 T 23-04-2016 RD1_RS05135 bcf0c4ef0a857806463ed7adac5dbf68 196 SUPERFAMILY SSF141523 48 100 1.18E-26 T 23-04-2016 RD1_RS05135 bcf0c4ef0a857806463ed7adac5dbf68 196 Pfam PF03734 L,D-transpeptidase catalytic domain 55 189 2.9E-13 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RD1_RS06835 09cdcfc2b27906c3a9b6d5614219345b 182 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 40 169 1.8E-24 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS06835 09cdcfc2b27906c3a9b6d5614219345b 182 PANTHER PTHR35011 1 182 4.9E-21 T 23-04-2016 RD1_RS16135 f83efdcfd12084fcf6c0e4056de69df2 74 Pfam PF06620 Protein of unknown function (DUF1150) 11 74 7.2E-20 T 23-04-2016 IPR009531 Protein of unknown function DUF1150 RD1_RS13890 6e26fe5942eba11d5a02cd9842994b26 105 Pfam PF11836 Phage tail tube protein, GTA-gp10 6 100 2.6E-23 T 23-04-2016 IPR021791 Phage tail tube protein, GTA-gp10 RD1_RS06970 51ecadf3c377ada1f0e702bc4559542e 351 PANTHER PTHR30574 1 341 4.8E-42 T 23-04-2016 RD1_RS06970 51ecadf3c377ada1f0e702bc4559542e 351 Pfam PF04143 Sulphur transport 29 337 4.5E-61 T 23-04-2016 IPR007272 Sulphur transport domain RD1_RS06970 51ecadf3c377ada1f0e702bc4559542e 351 PANTHER PTHR30574:SF1 1 341 4.8E-42 T 23-04-2016 RD1_RS00135 d4682ba9b221e7adc6dd51a2b7878a46 293 PANTHER PTHR36838 3 293 4.6E-54 T 23-04-2016 RD1_RS00135 d4682ba9b221e7adc6dd51a2b7878a46 293 PANTHER PTHR36838:SF2 3 293 4.6E-54 T 23-04-2016 RD1_RS00135 d4682ba9b221e7adc6dd51a2b7878a46 293 Pfam PF03547 Membrane transport protein 151 287 1.7E-13 T 23-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 RD1_RS00135 d4682ba9b221e7adc6dd51a2b7878a46 293 Pfam PF03547 Membrane transport protein 6 142 7.6E-7 T 23-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 RD1_RS17600 df45240ecd74282ba71e91a509ab1998 399 Pfam PF14907 Uncharacterised nucleotidyltransferase 37 285 4.0E-34 T 23-04-2016 RD1_RS04680 e6bf59b27f582822f8b9ba320950d2fe 149 TIGRFAM TIGR03646 YtoQ_fam: YtoQ family protein 3 143 1.5E-65 T 23-04-2016 IPR019884 YtoQ family protein RD1_RS04680 e6bf59b27f582822f8b9ba320950d2fe 149 Pfam PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ 6 143 8.7E-64 T 23-04-2016 IPR019884 YtoQ family protein RD1_RS20445 115c2d06a1279f0f3390ca2592ba866d 154 PIRSF PIRSF034110 1 154 4.9E-22 T 23-04-2016 IPR009593 Protein of unknown function DUF1203 RD1_RS20445 115c2d06a1279f0f3390ca2592ba866d 154 Pfam PF06718 Protein of unknown function (DUF1203) 37 153 7.8E-29 T 23-04-2016 IPR009593 Protein of unknown function DUF1203 RD1_RS03680 a5385e9044d44934682c88d0ab26b0ed 124 Pfam PF08870 Domain of unknown function (DUF1832) 5 112 1.1E-24 T 23-04-2016 IPR014969 DNA sulphur modification protein DndE RD1_RS03680 a5385e9044d44934682c88d0ab26b0ed 124 TIGRFAM TIGR03184 DNA_S_dndE: DNA sulfur modification protein DndE 6 108 3.3E-29 T 23-04-2016 IPR014969 DNA sulphur modification protein DndE RD1_RS06295 f10dda81f05ea9eea94dce34acddc50d 204 PANTHER PTHR30086 1 204 2.5E-28 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS06295 f10dda81f05ea9eea94dce34acddc50d 204 Pfam PF01810 LysE type translocator 19 200 8.7E-31 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RD1_RS06235 d6134fc4981aa8216e4c564b072e6987 207 Pfam PF03458 UPF0126 domain 6 80 4.8E-18 T 23-04-2016 IPR005115 Uncharacterised domain UPF0126 RD1_RS06235 d6134fc4981aa8216e4c564b072e6987 207 Pfam PF03458 UPF0126 domain 92 165 2.2E-16 T 23-04-2016 IPR005115 Uncharacterised domain UPF0126 RD1_RS06235 d6134fc4981aa8216e4c564b072e6987 207 PANTHER PTHR30506 1 206 5.9E-46 T 23-04-2016 RD1_RS04935 cfa22661033eaf7bd2b64c058adae9a6 104 Pfam PF12616 Protein of unknown function (DUF3775) 25 95 1.1E-25 T 23-04-2016 IPR022254 Protein of unknown function DUF3775 RD1_RS07355 e9f056f79f1d033dd7962b96f26ae847 104 Pfam PF11196 Protein of unknown function (DUF2834) 7 101 1.3E-27 T 23-04-2016 IPR021362 Protein of unknown function DUF2834 RD1_RS08830 46d4ea14f7fb43e217828728066dc48e 224 TIGRFAM TIGR03888 nitrile_beta: nitrile hydratase, beta subunit 1 220 3.5E-70 T 23-04-2016 IPR003168 Nitrile hydratase, beta subunit GO:0006807|GO:0018822|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 RD1_RS08830 46d4ea14f7fb43e217828728066dc48e 224 PIRSF PIRSF001427 1 223 8.9E-52 T 23-04-2016 IPR003168 Nitrile hydratase, beta subunit GO:0006807|GO:0018822|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 RD1_RS08830 46d4ea14f7fb43e217828728066dc48e 224 Pfam PF02211 Nitrile hydratase beta subunit 1 220 4.9E-73 T 23-04-2016 IPR024690 Nitrile hydratase beta subunit domain GO:0018822 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 RD1_RS08830 46d4ea14f7fb43e217828728066dc48e 224 Gene3D G3DSA:1.10.472.20 1 131 9.8E-41 T 23-04-2016 RD1_RS08830 46d4ea14f7fb43e217828728066dc48e 224 SUPERFAMILY SSF50090 1 220 3.81E-68 T 23-04-2016 IPR008990 Electron transport accessory protein-like domain RD1_RS08830 46d4ea14f7fb43e217828728066dc48e 224 Gene3D G3DSA:2.30.30.50 132 220 6.7E-32 T 23-04-2016 RD1_RS11785 43faa369fe0cc5ab2f303ebae2c69ec3 300 PANTHER PTHR30606 1 294 5.1E-42 T 23-04-2016 RD1_RS11785 43faa369fe0cc5ab2f303ebae2c69ec3 300 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 11 292 4.5E-42 T 23-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RD1_RS03720 ed0a21001b71f11c981352f17529c2c0 130 TIGRFAM TIGR04062 dnd_assoc_4: dnd system-associated protein 4 3 130 3.5E-45 T 23-04-2016 IPR023983 DNA sulphur modification system-associated protein 4 RD1_RS02590 eba296c38b02940a1fdc7365d74fa2cd 518 PANTHER PTHR30183 46 518 1.0E-111 T 23-04-2016 RD1_RS02590 eba296c38b02940a1fdc7365d74fa2cd 518 SUPERFAMILY SSF161098 18 256 3.66E-39 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS02590 eba296c38b02940a1fdc7365d74fa2cd 518 Gene3D G3DSA:1.10.3720.10 288 512 1.5E-21 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS02590 eba296c38b02940a1fdc7365d74fa2cd 518 Gene3D G3DSA:1.10.3720.10 45 256 1.3E-32 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS02590 eba296c38b02940a1fdc7365d74fa2cd 518 SUPERFAMILY SSF161098 281 510 3.79E-28 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RD1_RS02590 eba296c38b02940a1fdc7365d74fa2cd 518 PANTHER PTHR30183:SF8 46 518 1.0E-111 T 23-04-2016 RD1_RS02280 09a351e285e8de04e23565092948b984 169 Gene3D G3DSA:3.40.30.10 4 153 8.9E-19 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS02280 09a351e285e8de04e23565092948b984 169 Pfam PF00578 AhpC/TSA family 7 133 6.6E-15 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 RD1_RS02280 09a351e285e8de04e23565092948b984 169 SUPERFAMILY SSF52833 5 162 4.44E-25 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS10540 2255b23521f7bf83416838724263b976 235 Pfam PF07040 Protein of unknown function (DUF1326) 44 221 1.5E-47 T 23-04-2016 IPR009758 Protein of unknown function DUF1326 RD1_RS06320 af0c77bfa315842904980da431ad0e3e 109 Pfam PF07372 Protein of unknown function (DUF1491) 4 104 4.6E-35 T 23-04-2016 IPR009964 Protein of unknown function DUF1491 RD1_RS10745 a0a11f0ba85612bb2dacb20461e908bc 338 PANTHER PTHR33376 1 336 1.2E-26 T 23-04-2016 RD1_RS10745 a0a11f0ba85612bb2dacb20461e908bc 338 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 30 302 1.1E-28 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS00575 3b69139df4cde939cf71fdd0081d72f1 139 SUPERFAMILY SSF46626 21 135 5.64E-28 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS00575 3b69139df4cde939cf71fdd0081d72f1 139 Gene3D G3DSA:1.10.760.10 21 135 1.4E-32 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS10800 2b63a6f0639022212b4abc9f59143cd9 331 SUPERFAMILY SSF53850 43 260 1.78E-17 T 23-04-2016 RD1_RS10800 2b63a6f0639022212b4abc9f59143cd9 331 Gene3D G3DSA:3.40.190.10 118 190 9.0E-6 T 23-04-2016 RD1_RS10800 2b63a6f0639022212b4abc9f59143cd9 331 PANTHER PTHR31528 1 313 6.4E-46 T 23-04-2016 IPR027939 NMT1/THI5 family GO:0009228 UniPathway: UPA00060 RD1_RS10800 2b63a6f0639022212b4abc9f59143cd9 331 Pfam PF09084 NMT1/THI5 like 48 252 1.3E-36 T 23-04-2016 IPR015168 SsuA/THI5-like RD1_RS00040 2ff457906ba4811feceead0166017ae8 186 SUPERFAMILY SSF103025 67 182 1.65E-7 T 23-04-2016 RD1_RS00040 2ff457906ba4811feceead0166017ae8 186 Pfam PF04268 Sarcosine oxidase, gamma subunit family 42 182 1.6E-14 T 23-04-2016 IPR007375 Sarcosine oxidase, gamma subunit KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RD1_RS06330 13939850a7a3add1fca20d935d49ee26 131 Pfam PF03724 META domain 30 125 1.3E-14 T 23-04-2016 IPR005184 Domain of unknown function DUF306, Meta/HslJ RD1_RS12775 47c16e72f4687a07f26f32fe83b2a326 282 SUPERFAMILY SSF52540 14 50 2.74E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12775 47c16e72f4687a07f26f32fe83b2a326 282 SUPERFAMILY SSF52540 104 223 2.74E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12775 47c16e72f4687a07f26f32fe83b2a326 282 Gene3D G3DSA:3.40.50.300 122 265 6.5E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS12775 47c16e72f4687a07f26f32fe83b2a326 282 Gene3D G3DSA:3.40.50.300 14 69 6.5E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RD1_RS10535 1921c78287d9fd94b9b4ab26919bc5b4 262 Pfam PF09948 Predicted metal-binding integral membrane protein (DUF2182) 66 252 1.2E-57 T 23-04-2016 IPR018688 Protein of unknown function DUF2182, transmembrane, metal-binding RD1_RS07370 6301586b9ed78c5e7e610c48785dbd8d 269 Pfam PF13717 zinc-ribbon domain 1 36 7.0E-13 T 23-04-2016 RD1_RS07370 6301586b9ed78c5e7e610c48785dbd8d 269 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 1 35 3.8E-12 T 23-04-2016 IPR011723 Zinc finger/thioredoxin putative RD1_RS09960 03650345baf53e54d0c17a2deb429c8d 141 Pfam PF06676 Protein of unknown function (DUF1178) 1 136 3.1E-47 T 23-04-2016 IPR009562 Protein of unknown function DUF1178 RD1_RS09960 03650345baf53e54d0c17a2deb429c8d 141 PIRSF PIRSF032131 1 140 3.8E-46 T 23-04-2016 IPR009562 Protein of unknown function DUF1178 RD1_RS12750 c346948b52e2f4f6ec792d789f4bdcd7 513 Pfam PF06253 Trimethylamine methyltransferase (MTTB) 10 507 3.0E-229 T 23-04-2016 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250|UniPathway: UPA00645 RD1_RS12750 c346948b52e2f4f6ec792d789f4bdcd7 513 PIRSF PIRSF037567 1 512 5.8E-161 T 23-04-2016 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250|UniPathway: UPA00645 RD1_RS03130 9de1be5e342225e20fc5678eb69a8f71 340 PANTHER PTHR33376 1 338 4.2E-58 T 23-04-2016 RD1_RS03130 9de1be5e342225e20fc5678eb69a8f71 340 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 38 317 6.2E-48 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS16020 2ff8cb6be29bcec9c8039e4e7eabcb05 134 Pfam PF07845 Protein of unknown function (DUF1636) 8 121 2.3E-31 T 23-04-2016 IPR012863 Protein of unknown function DUF1636 RD1_RS16020 2ff8cb6be29bcec9c8039e4e7eabcb05 134 Gene3D G3DSA:3.40.30.10 5 65 4.6E-4 T 23-04-2016 IPR012336 Thioredoxin-like fold RD1_RS14550 7590dc8402e7d3fa67ad143c76ae237b 322 Pfam PF05036 Sporulation related domain 245 319 1.9E-8 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 RD1_RS15500 721b0cf233af5500b0cb3a406e1b79ac 277 Gene3D G3DSA:3.40.50.280 152 269 1.3E-7 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS15500 721b0cf233af5500b0cb3a406e1b79ac 277 SUPERFAMILY SSF52242 152 253 2.09E-8 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS15500 721b0cf233af5500b0cb3a406e1b79ac 277 Pfam PF02310 B12 binding domain 151 250 6.0E-10 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RD1_RS05650 a0b1f1e6da63d9fb37ee45c234d001d6 838 Pfam PF02687 FtsX-like permease family 719 827 2.1E-9 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RD1_RS05650 a0b1f1e6da63d9fb37ee45c234d001d6 838 Pfam PF02687 FtsX-like permease family 263 375 3.0E-13 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RD1_RS05650 a0b1f1e6da63d9fb37ee45c234d001d6 838 PANTHER PTHR30287 1 838 1.8E-101 T 23-04-2016 RD1_RS20475 357642be8d6b42b78c7842743b091144 171 SUPERFAMILY SSF101756 85 156 3.53E-13 T 23-04-2016 IPR005220 Bacterial OB-fold RD1_RS20475 357642be8d6b42b78c7842743b091144 171 Pfam PF04076 Bacterial OB fold (BOF) protein 89 145 2.1E-6 T 23-04-2016 IPR005220 Bacterial OB-fold RD1_RS20475 357642be8d6b42b78c7842743b091144 171 Gene3D G3DSA:2.40.50.200 86 157 3.5E-10 T 23-04-2016 IPR005220 Bacterial OB-fold RD1_RS07825 0eefdad76737dfb0d927ec644253e9e0 401 Pfam PF05940 NnrS protein 17 396 3.9E-108 T 23-04-2016 IPR010266 NnrS RD1_RS08635 53fa9e5d5ddce7e29b9ebb24b86a04ae 329 PIRSF PIRSF017082 1 318 2.7E-62 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RD1_RS08635 53fa9e5d5ddce7e29b9ebb24b86a04ae 329 SUPERFAMILY SSF53850 110 280 1.63E-6 T 23-04-2016 RD1_RS08635 53fa9e5d5ddce7e29b9ebb24b86a04ae 329 PANTHER PTHR30349 6 277 2.6E-35 T 23-04-2016 RD1_RS08635 53fa9e5d5ddce7e29b9ebb24b86a04ae 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 42 302 3.9E-40 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RD1_RS08635 53fa9e5d5ddce7e29b9ebb24b86a04ae 329 PANTHER PTHR30349:SF1 6 277 2.6E-35 T 23-04-2016 RD1_RS18250 50e1d03e8eb201d786c8bf7c491ea8b1 402 Pfam PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 150 294 3.6E-31 T 23-04-2016 IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal RD1_RS18250 50e1d03e8eb201d786c8bf7c491ea8b1 402 PANTHER PTHR31332:SF0 43 402 7.0E-105 T 23-04-2016 RD1_RS18250 50e1d03e8eb201d786c8bf7c491ea8b1 402 Pfam PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term 68 141 1.4E-18 T 23-04-2016 IPR007516 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal RD1_RS18250 50e1d03e8eb201d786c8bf7c491ea8b1 402 PANTHER PTHR31332 43 402 7.0E-105 T 23-04-2016 RD1_RS10670 18977ea1a3bd6f32967cd038d66d3081 352 PANTHER PTHR33376 1 341 5.9E-66 T 23-04-2016 RD1_RS10670 18977ea1a3bd6f32967cd038d66d3081 352 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 36 317 3.3E-50 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS06495 b1d2e0a4f008b358715014288d7950b9 305 SUPERFAMILY SSF56935 57 277 6.23E-5 T 23-04-2016 RD1_RS06495 b1d2e0a4f008b358715014288d7950b9 305 Gene3D G3DSA:2.40.170.20 138 199 7.3E-5 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RD1_RS06495 b1d2e0a4f008b358715014288d7950b9 305 Gene3D G3DSA:2.40.170.20 32 86 7.3E-5 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RD1_RS18270 b3eac3c3fda65dba1ac0fd11361acaaf 162 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 24 152 4.0E-27 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS18270 b3eac3c3fda65dba1ac0fd11361acaaf 162 PANTHER PTHR35011:SF2 1 151 5.8E-27 T 23-04-2016 RD1_RS18270 b3eac3c3fda65dba1ac0fd11361acaaf 162 PANTHER PTHR35011 1 151 5.8E-27 T 23-04-2016 RD1_RS04125 24817fe9e54c23b5b7692046dfa22537 160 Pfam PF11684 Protein of unknown function (DUF2380) 18 155 2.5E-48 T 23-04-2016 IPR021698 Protein of unknown function DUF2380 RD1_RS05525 9945b8d4845149870db463e0f4cf8f63 270 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 31 222 8.6E-44 T 23-04-2016 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN RD1_RS05525 9945b8d4845149870db463e0f4cf8f63 270 SUPERFAMILY SSF159501 28 245 2.12E-54 T 23-04-2016 RD1_RS14040 b4360566179374e91662f88b1abaaaa1 98 Pfam PF13769 Virulence factor 7 92 8.3E-31 T 23-04-2016 IPR025989 Virulence factor domain RD1_RS13815 0827009f664174abcf11219f8befa49b 164 PANTHER PTHR35024:SF2 19 147 3.5E-25 T 23-04-2016 RD1_RS13815 0827009f664174abcf11219f8befa49b 164 Pfam PF04519 Polymer-forming cytoskeletal 48 141 2.5E-23 T 23-04-2016 IPR007607 Protein of unknown function DUF583 RD1_RS13815 0827009f664174abcf11219f8befa49b 164 PANTHER PTHR35024 19 147 3.5E-25 T 23-04-2016 RD1_RS07590 11f375cba346097fb8d4495529a2b226 257 Pfam PF09608 Putative transmembrane protein (Alph_Pro_TM) 26 253 8.1E-80 T 23-04-2016 IPR019088 Conserved hypothetical protein CHP02186-related, transmembrane RD1_RS06425 21a4b5ad05a5d3c7aad3a1d0e9c32505 67 Pfam PF04588 Hypoxia induced protein conserved region 6 58 1.7E-12 T 23-04-2016 IPR007667 Hypoxia induced protein, domain RD1_RS11445 2bc943d1511bb9ccfaabf0f5a8dfa662 645 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 167 320 5.7E-8 T 23-04-2016 IPR000477 Reverse transcriptase domain RD1_RS03010 d148bf01df18a00595e8464ef6d82a74 581 Pfam PF07940 Heparinase II/III-like protein 300 558 7.0E-65 T 23-04-2016 IPR012480 Heparinase II/III-like MetaCyc: PWY-7651 RD1_RS00525 ba50ab96c1cb03f34b53283ce57fb478 290 SUPERFAMILY SSF159245 3 260 6.15E-38 T 23-04-2016 RD1_RS09225 afa131b5a7ead554cd8cc70a98eb3489 219 Pfam PF05875 Ceramidase 17 213 1.5E-11 T 23-04-2016 IPR008901 Ceramidase GO:0006672|GO:0016021|GO:0016811 Reactome: REACT_22258 RD1_RS06205 3ab87580df3ceef4926f1c49c961fd31 513 PIRSF PIRSF037567 1 513 2.8E-152 T 23-04-2016 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250|UniPathway: UPA00645 RD1_RS06205 3ab87580df3ceef4926f1c49c961fd31 513 Pfam PF06253 Trimethylamine methyltransferase (MTTB) 9 508 4.9E-201 T 23-04-2016 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250|UniPathway: UPA00645 RD1_RS07340 1a5a43b0ba5b615cc1e5d30276b5b10b 460 Gene3D G3DSA:3.60.10.10 249 441 9.1E-62 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS07340 1a5a43b0ba5b615cc1e5d30276b5b10b 460 Gene3D G3DSA:3.60.10.10 49 140 9.1E-62 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS07340 1a5a43b0ba5b615cc1e5d30276b5b10b 460 SUPERFAMILY SSF56219 39 145 2.24E-18 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS07340 1a5a43b0ba5b615cc1e5d30276b5b10b 460 SUPERFAMILY SSF56219 264 380 2.24E-18 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS07340 1a5a43b0ba5b615cc1e5d30276b5b10b 460 SUPERFAMILY SSF56219 416 443 2.24E-18 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS12330 53c82e851b8c21fa9cd8247262808730 508 Pfam PF00939 Sodium:sulfate symporter transmembrane region 24 441 4.6E-21 T 23-04-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RD1_RS04190 2f05dbe628e19411bfd284cce110af96 85 Pfam PF06945 Protein of unknown function (DUF1289) 6 44 7.7E-11 T 23-04-2016 IPR010710 Protein of unknown function DUF1289 RD1_RS08585 031eb88718e2c72296f71713a96c5814 211 Pfam PF08856 Protein of unknown function (DUF1826) 19 202 5.6E-57 T 23-04-2016 IPR014955 Protein of unknown function DUF1826 RD1_RS12620 908aa116efc0a5debbfb320aeefab136 188 Pfam PF04366 Las17-binding protein actin regulator 101 183 8.8E-12 T 23-04-2016 IPR007461 Ysc84 actin-binding domain RD1_RS09430 e4d2179cd3024eaca02c1aa75ef7e28f 205 Pfam PF13468 Glyoxalase-like domain 4 172 6.4E-40 T 23-04-2016 IPR025870 Glyoxalase-like domain RD1_RS14340 5702b2499f5dcc1acf6c419f7ce5843a 365 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 356 5.3E-55 T 23-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 RD1_RS14340 5702b2499f5dcc1acf6c419f7ce5843a 365 PANTHER PTHR33529:SF1 1 364 8.6E-47 T 23-04-2016 RD1_RS14340 5702b2499f5dcc1acf6c419f7ce5843a 365 PANTHER PTHR33529 1 364 8.6E-47 T 23-04-2016 RD1_RS14340 5702b2499f5dcc1acf6c419f7ce5843a 365 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 2 361 6.2E-98 T 23-04-2016 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 RD1_RS19120 cb0e7413ba967d4ada8d2fcc0a701ef5 222 Pfam PF10067 Predicted membrane protein (DUF2306) 53 205 1.2E-42 T 23-04-2016 IPR018750 Protein of unknown function DUF2306, membrane RD1_RS04710 d2f358365ae8ed5aadff906dcfb8ed88 899 PIRSF PIRSF034586 1 898 5.8E-197 T 23-04-2016 IPR017030 Virulence effector, SrfC RD1_RS04710 d2f358365ae8ed5aadff906dcfb8ed88 899 Pfam PF10139 Putative bacterial virulence factor 21 890 0.0 T 23-04-2016 IPR017030 Virulence effector, SrfC RD1_RS07120 e855dd8729066fdf157cecca27de2275 327 PANTHER PTHR33376 1 324 5.6E-65 T 23-04-2016 RD1_RS07120 e855dd8729066fdf157cecca27de2275 327 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 33 292 4.8E-57 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RD1_RS07120 e855dd8729066fdf157cecca27de2275 327 PANTHER PTHR33376:SF2 1 324 5.6E-65 T 23-04-2016 RD1_RS06110 fd38b2f1f440558d1adfbbbc32023588 176 Hamap MF_01398 ATP synthase subunit b [atpF]. 20 174 9.822 T 23-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RD1_RS06110 fd38b2f1f440558d1adfbbbc32023588 176 Pfam PF00430 ATP synthase B/B' CF(0) 29 155 1.5E-17 T 23-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RD1_RS16580 2671cc500a3fda44d5ecc4a1634a95d7 181 Pfam PF16316 Domain of unknown function (DUF4956) 2 173 1.5E-47 T 23-04-2016 IPR032531 Protein of unknown function DUF4956 RD1_RS14495 befd6ae89f776548545a3656739ebd3e 171 Pfam PF02620 Uncharacterized ACR, COG1399 54 165 7.9E-12 T 23-04-2016 IPR003772 Protein of unknown function DUF177 RD1_RS02205 05d85c64f5c7c41a3c7ea0a730289907 354 Pfam PF00487 Fatty acid desaturase 64 295 5.8E-27 T 23-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 RD1_RS00215 5fa36f156ab409803551aba5a8ec5a3b 163 Pfam PF12100 Domain of unknown function (DUF3576) 68 158 1.6E-23 T 23-04-2016 IPR021959 Protein of unknown function DUF3576 RD1_RS03660 0021bf6f16f0b11661005604db869be2 177 Pfam PF08722 TnsA endonuclease N terminal 13 72 1.3E-6 T 23-04-2016 IPR014833 TnsA endonuclease, N-terminal RD1_RS18675 aacb5096f43c54f325f24138f12cb9bc 109 SUPERFAMILY SSF46579 52 101 6.28E-5 T 23-04-2016 IPR009053 Prefoldin RD1_RS15540 bb44838ab861468b4b712f95a3677815 334 Pfam PF09898 Uncharacterized protein conserved in bacteria (DUF2125) 19 329 9.0E-73 T 23-04-2016 IPR018666 Protein of unknown function DUF2125 RD1_RS10915 6b7fae477fdba4b6ce35e79192ab9c83 262 Pfam PF09948 Predicted metal-binding integral membrane protein (DUF2182) 93 258 4.3E-14 T 23-04-2016 IPR018688 Protein of unknown function DUF2182, transmembrane, metal-binding RD1_RS20405 ebc46e651f7b14826f6ab9226077ec8d 306 Pfam PF10123 Mu-like prophage I protein 185 302 2.1E-16 T 23-04-2016 IPR012106 Protease, Mu phage/prophage I type RD1_RS20405 ebc46e651f7b14826f6ab9226077ec8d 306 Pfam PF10123 Mu-like prophage I protein 21 184 2.8E-46 T 23-04-2016 IPR012106 Protease, Mu phage/prophage I type RD1_RS16815 b92633c42ef335d9c36e642241a52c07 97 Gene3D G3DSA:3.30.70.900 4 97 4.7E-19 T 23-04-2016 RD1_RS16815 b92633c42ef335d9c36e642241a52c07 97 Pfam PF07876 Stress responsive A/B Barrel Domain 7 97 8.1E-17 T 23-04-2016 IPR013097 Stress responsive alpha-beta barrel RD1_RS16815 b92633c42ef335d9c36e642241a52c07 97 SMART SM00886 7 97 7.1E-16 T 23-04-2016 IPR013097 Stress responsive alpha-beta barrel RD1_RS16815 b92633c42ef335d9c36e642241a52c07 97 SUPERFAMILY SSF54909 4 97 3.22E-21 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS08625 a6b1fcee0b5ca009b18db92c441baf94 501 PANTHER PTHR35342 1 501 1.7E-152 T 23-04-2016 RD1_RS08625 a6b1fcee0b5ca009b18db92c441baf94 501 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 18 436 1.1E-132 T 23-04-2016 IPR002823 Protein of unknown function DUF112, transmembrane RD1_RS10420 2ea28907cbf54fafaff3d16e1d34db2e 212 Pfam PF07796 Protein of unknown function (DUF1638) 51 208 2.4E-39 T 23-04-2016 IPR012437 Domain of unknown function DUF1638 RD1_RS08630 095e5671731f727a229cff1a1e569b6d 158 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 13 152 1.1E-11 T 23-04-2016 IPR009936 Protein of unknown function DUF1468 RD1_RS04715 6918b7a12e3c9042141f57ca6144ac8d 335 Gene3D G3DSA:1.25.40.10 240 316 5.0E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RD1_RS04660 5be1a771ec48184d22fbca1370fd8d35 222 Pfam PF10707 PhoP regulatory network protein YrbL 8 207 7.5E-67 T 23-04-2016 IPR019647 PhoP regulatory network protein YrbL RD1_RS09950 10548e1005fb60d2e0783831efa0414b 253 Pfam PF12787 EcsC protein family 58 228 3.3E-25 T 23-04-2016 IPR024787 EcsC protein RD1_RS07160 5f18bd202c66cff09d40ca389a8600fb 273 Pfam PF12679 ABC-2 family transporter protein 6 271 7.6E-33 T 23-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 RD1_RS07160 5f18bd202c66cff09d40ca389a8600fb 273 PANTHER PTHR30294 1 271 9.7E-34 T 23-04-2016 RD1_RS07160 5f18bd202c66cff09d40ca389a8600fb 273 PANTHER PTHR30294:SF26 1 271 9.7E-34 T 23-04-2016 RD1_RS05255 0373713b884ae81613f0f112effcf522 251 SUPERFAMILY SSF56672 2 97 2.48E-5 T 23-04-2016 RD1_RS10730 795bd39b7576821f4eb9ff3654fa9a67 1205 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 858 1205 4.8E-47 T 23-04-2016 IPR007452 Translocation and assembly module TamB RD1_RS13935 4d8c35510e60370c2389006acc16f3f8 408 Pfam PF03237 Terminase-like family 16 391 1.1E-51 T 23-04-2016 IPR004921 Terminase, large subunit RD1_RS11260 6512ff35875aa1e6d81867926b3ee918 173 Pfam PF10649 Protein of unknown function (DUF2478) 3 160 5.0E-42 T 23-04-2016 IPR018912 Protein of unknown function DUF2478 RD1_RS01625 92fc92279bf47b8b62ce0b06b0ee2aeb 164 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 7 158 6.5E-11 T 23-04-2016 IPR006522 Phage virion morphogensis protein RD1_RS01625 92fc92279bf47b8b62ce0b06b0ee2aeb 164 Pfam PF05069 Phage virion morphogenesis family 7 160 1.7E-23 T 23-04-2016 IPR006522 Phage virion morphogensis protein RD1_RS12515 bd03e04b73a6405a075160f6fbeca8eb 89 Pfam PF06233 Usg-like family 9 88 3.4E-40 T 23-04-2016 IPR009354 Usg-like UniPathway: UPA00035 RD1_RS00330 725e8e4c0ed59506efab4c31cd17ed64 256 PANTHER PTHR30296 8 250 2.4E-95 T 23-04-2016 RD1_RS00330 725e8e4c0ed59506efab4c31cd17ed64 256 PANTHER PTHR30296:SF0 8 250 2.4E-95 T 23-04-2016 RD1_RS00330 725e8e4c0ed59506efab4c31cd17ed64 256 Pfam PF02754 Cysteine-rich domain 9 90 1.1E-13 T 23-04-2016 IPR004017 Cysteine-rich domain RD1_RS00330 725e8e4c0ed59506efab4c31cd17ed64 256 Pfam PF02754 Cysteine-rich domain 138 221 3.4E-10 T 23-04-2016 IPR004017 Cysteine-rich domain RD1_RS07655 b11fa0366cdb1007d965aa65e3b701e9 236 Pfam PF01435 Peptidase family M48 74 231 1.6E-19 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RD1_RS07655 b11fa0366cdb1007d965aa65e3b701e9 236 PANTHER PTHR22726 68 233 1.0E-22 T 23-04-2016 RD1_RS07655 b11fa0366cdb1007d965aa65e3b701e9 236 Gene3D G3DSA:3.30.2010.10 81 134 4.2E-9 T 23-04-2016 RD1_RS04910 66684ae6067831449b9db5cce296ba67 155 Pfam PF11164 Protein of unknown function (DUF2948) 14 153 7.7E-50 T 23-04-2016 IPR021335 Protein of unknown function DUF2948 RD1_RS09915 0e295d0b36e779949fe98e9cdd7340ab 154 Pfam PF04945 YHS domain 48 93 1.7E-7 T 23-04-2016 IPR007029 YHS domain RD1_RS01920 774a98050238fcd8dd1a02218f4b3fbd 149 SUPERFAMILY SSF55811 8 144 4.6E-24 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS01920 774a98050238fcd8dd1a02218f4b3fbd 149 Gene3D G3DSA:3.90.79.10 8 144 3.2E-31 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RD1_RS01920 774a98050238fcd8dd1a02218f4b3fbd 149 Pfam PF00293 NUDIX domain 21 140 4.5E-13 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RD1_RS01920 774a98050238fcd8dd1a02218f4b3fbd 149 ProSitePatterns PS00893 Nudix box signature. 48 69 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RD1_RS04415 8cc9d92ff0ad69a5cabd22f8bfb8c658 147 Pfam PF14347 Domain of unknown function (DUF4399) 49 147 1.3E-35 T 23-04-2016 IPR025512 Domain of unknown function DUF4399 RD1_RS12955 1c2b2730d60668de09b8184a5bf1bb9a 253 Pfam PF09955 Predicted integral membrane protein (DUF2189) 62 186 3.2E-33 T 23-04-2016 IPR018692 Predicted integral membrane protein DUF2189 RD1_RS13355 3970740a170456ae48b27d02126e146d 201 Pfam PF11748 Protein of unknown function (DUF3306) 8 107 1.1E-20 T 23-04-2016 IPR021735 Protein of unknown function DUF3306 RD1_RS19045 1e8c3cebf1dc6543eccac43b0462f5b9 160 Pfam PF13508 Acetyltransferase (GNAT) domain 54 138 1.9E-8 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RD1_RS19045 1e8c3cebf1dc6543eccac43b0462f5b9 160 PANTHER PTHR23091 7 160 3.1E-13 T 23-04-2016 RD1_RS19045 1e8c3cebf1dc6543eccac43b0462f5b9 160 Gene3D G3DSA:3.40.630.30 8 159 2.1E-27 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS19045 1e8c3cebf1dc6543eccac43b0462f5b9 160 SUPERFAMILY SSF55729 7 159 6.73E-22 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS11770 926189430ea1e39f906aea60cca18353 207 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 182 206 8.7E-4 T 23-04-2016 IPR013424 PEP-CTERM protein-sorting domain RD1_RS11770 926189430ea1e39f906aea60cca18353 207 TIGRFAM TIGR03370 VPLPA-CTERM: VPLPA-CTERM protein sorting domain 182 206 3.6E-9 T 23-04-2016 IPR022472 VPLPA-CTERM protein sorting domain RD1_RS16460 8d6cca01e2ec10fd74e3ac528954e99c 164 Gene3D G3DSA:3.90.420.10 20 163 3.5E-10 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RD1_RS16460 8d6cca01e2ec10fd74e3ac528954e99c 164 SUPERFAMILY SSF56524 22 163 1.57E-23 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RD1_RS16460 8d6cca01e2ec10fd74e3ac528954e99c 164 Pfam PF00174 Oxidoreductase molybdopterin binding domain 26 135 2.6E-8 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RD1_RS08795 28c95e360ea76358be31b33daf08eb00 145 Pfam PF05099 Tellurite resistance protein TerB 10 138 2.3E-33 T 23-04-2016 IPR007791 Co-chaperone DjlA, N-terminal RD1_RS08795 28c95e360ea76358be31b33daf08eb00 145 Gene3D G3DSA:1.10.3680.10 12 141 8.0E-19 T 23-04-2016 IPR029024 TerB-like RD1_RS08795 28c95e360ea76358be31b33daf08eb00 145 SUPERFAMILY SSF158682 10 143 1.15E-26 T 23-04-2016 IPR029024 TerB-like RD1_RS01445 5b2b2c20b67ae8a2e8d40e757a551ad8 103 SUPERFAMILY SSF54913 2 103 8.53E-16 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta RD1_RS10045 f3569fc55d58e8332ea40a8c93655fa9 189 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 30 182 6.0E-14 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RD1_RS10850 5e4b5e0d55f40aa437a6de8c19c79641 161 Pfam PF09411 Lipid A 3-O-deacylase (PagL) 78 159 5.8E-17 T 23-04-2016 IPR018550 Lipid A 3-O-deacylase-related RD1_RS10850 5e4b5e0d55f40aa437a6de8c19c79641 161 Gene3D G3DSA:2.40.160.20 22 161 4.2E-24 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RD1_RS15070 dc5caeba91bf549234c88e7a609699fc 166 Pfam PF11695 Domain of unknown function (DUF3291) 8 148 3.1E-51 T 23-04-2016 IPR021708 Domain of unknown function DUF3291 RD1_RS15070 dc5caeba91bf549234c88e7a609699fc 166 SUPERFAMILY SSF54909 20 123 1.13E-12 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS14900 ac1b270888033f50314bed095f6e1003 184 PANTHER PTHR36926:SF1 3 153 1.3E-21 T 23-04-2016 RD1_RS14900 ac1b270888033f50314bed095f6e1003 184 Pfam PF02674 Colicin V production protein 7 155 4.1E-26 T 23-04-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 RD1_RS14900 ac1b270888033f50314bed095f6e1003 184 PANTHER PTHR36926 3 153 1.3E-21 T 23-04-2016 RD1_RS02495 6d71254350ca8e7f9fddda3fc9c9b4c5 226 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 203 1.2E-11 T 23-04-2016 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family GO:0000041|GO:0016021 UniPathway: UPA00148 RD1_RS14045 609c73d8e791d30bd5fe2769ce5dc054 308 SUPERFAMILY SSF51730 28 294 7.65E-41 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like RD1_RS14045 609c73d8e791d30bd5fe2769ce5dc054 308 Gene3D G3DSA:3.20.20.220 28 294 5.3E-25 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like RD1_RS05445 2a07a72e575ba9a4047df15e32a21952 239 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 6 212 4.7E-20 T 23-04-2016 RD1_RS12290 259036ea65faba48323e7daea99e655a 330 Pfam PF00892 EamA-like transporter family 5 134 3.8E-8 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RD1_RS04145 886fecc4541620bd6a10d9441db629cd 83 Pfam PF13670 Peptidase propeptide and YPEB domain 5 74 3.1E-11 T 23-04-2016 IPR025711 PepSY domain RD1_RS08000 13554b873005cdebe5eba0c45b8f56a4 171 Pfam PF11736 Protein of unknown function (DUF3299) 30 163 6.5E-36 T 23-04-2016 IPR021727 Protein of unknown function DUF3299 RD1_RS17630 6db50a61ccbabf163a68fe9315f8bebb 95 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 24 87 1.3E-14 T 23-04-2016 IPR008792 Coenzyme PQQ synthesis D UniPathway: UPA00539 RD1_RS00600 f67a04d4ffac8cde4b8a7a1b7db5bb56 155 TIGRFAM TIGR03054 photo_alph_chp1: putative photosynthetic complex assembly protein 21 152 5.9E-27 T 23-04-2016 IPR017495 Putative photosynthetic complex assembly protein RD1_RS14890 c7c5c301baae6b726558d6635d2ec44f 217 TIGRFAM TIGR03370 VPLPA-CTERM: VPLPA-CTERM protein sorting domain 193 216 9.2E-7 T 23-04-2016 IPR022472 VPLPA-CTERM protein sorting domain RD1_RS12545 d1eb2a36e14d0ebc66dda6ce3fe15350 397 Pfam PF13795 HupE / UreJ protein 204 349 9.3E-49 T 23-04-2016 IPR032809 Putative HupE/UreJ protein RD1_RS08455 60c2bf5c5cd74e6fd77e994e69ff9de5 755 SUPERFAMILY SSF53067 61 156 4.27E-6 T 23-04-2016 RD1_RS05120 23c48040b8d169cc3201d5bfc16abc76 94 TIGRFAM TIGR03647 Na_symport_sm: putative solute:sodium symporter small subunit 19 94 1.5E-31 T 23-04-2016 IPR019886 Sodium symporter small subunit, predicted RD1_RS05120 23c48040b8d169cc3201d5bfc16abc76 94 Pfam PF13937 Domain of unknown function (DUF4212) 18 93 1.9E-31 T 23-04-2016 IPR019886 Sodium symporter small subunit, predicted RD1_RS19680 e432ce5619771e63f0e10d20ce3cc177 72 SUPERFAMILY SSF56219 2 72 3.78E-13 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS19680 e432ce5619771e63f0e10d20ce3cc177 72 Gene3D G3DSA:3.60.10.10 2 72 3.3E-13 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RD1_RS07660 53e0a16fc9b29ece876650a81d4c6193 129 Pfam PF04134 Protein of unknown function, DUF393 11 120 6.0E-18 T 23-04-2016 IPR007263 Protein of unknown function DUF393 RD1_RS01610 0e063be2a326a8870f31159dd05ab3f3 298 Pfam PF10124 Mu-like prophage major head subunit gpT 9 296 1.0E-124 T 23-04-2016 IPR018774 Bacteriophage Mu, GpT RD1_RS14365 b5684b3e3a32a4a2007e473cb8d17c79 187 Pfam PF13763 Domain of unknown function (DUF4167) 10 84 8.8E-32 T 23-04-2016 IPR025430 Domain of unknown function DUF4167 RD1_RS14725 b333a8dfba3d5183d29369beadbdf777 648 Pfam PF04748 Divergent polysaccharide deacetylase 451 644 7.9E-28 T 23-04-2016 IPR006837 Protein of unknown function DUF610, YibQ RD1_RS14725 b333a8dfba3d5183d29369beadbdf777 648 SUPERFAMILY SSF88713 438 645 5.78E-37 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RD1_RS14725 b333a8dfba3d5183d29369beadbdf777 648 Gene3D G3DSA:3.20.20.370 427 646 6.3E-34 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RD1_RS15880 52367010a44faa1ce05a3662e9172b84 85 Gene3D G3DSA:3.40.50.720 2 66 2.7E-5 T 23-04-2016 IPR016040 NAD(P)-binding domain RD1_RS15705 143492d2400dffde868e2634bef3cbe2 268 Pfam PF11412 Disulphide bond corrector protein DsbC 39 142 1.0E-18 T 23-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain RD1_RS11375 d16ea9aa4935621e94bb459bfcdb8a59 62 Pfam PF13396 Phospholipase_D-nuclease N-terminal 12 53 2.8E-10 T 23-04-2016 IPR027379 Cardiolipin synthase N-terminal RD1_RS01265 8100565953551379d8a2a8b27c481e9c 197 SUPERFAMILY SSF158791 121 187 5.1E-8 T 23-04-2016 RD1_RS01265 8100565953551379d8a2a8b27c481e9c 197 Gene3D G3DSA:1.25.60.10 128 181 5.3E-5 T 23-04-2016 RD1_RS03890 e3b78c2a31a9ce3a212243dc845f248a 484 Gene3D G3DSA:3.30.470.20 131 358 1.1E-14 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RD1_RS03890 e3b78c2a31a9ce3a212243dc845f248a 484 SUPERFAMILY SSF56059 113 345 3.54E-24 T 23-04-2016 RD1_RS08805 be920fb98eb3495da1cf998e227ae406 252 TIGRFAM TIGR03370 VPLPA-CTERM: VPLPA-CTERM protein sorting domain 224 248 7.1E-10 T 23-04-2016 IPR022472 VPLPA-CTERM protein sorting domain RD1_RS11825 a72fabf1260467d72b0b3c1b1a66c0b9 237 TIGRFAM TIGR03370 VPLPA-CTERM: VPLPA-CTERM protein sorting domain 211 234 3.1E-11 T 23-04-2016 IPR022472 VPLPA-CTERM protein sorting domain RD1_RS01620 b28d102f8e2d9e22b52e9ff56041e741 100 Gene3D G3DSA:1.10.10.60 67 90 6.1E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RD1_RS05000 659c243cf34b544dfcfcffec69da99aa 159 Pfam PF12692 S-adenosyl-L-methionine methyltransferase 1 158 1.3E-72 T 23-04-2016 IPR025690 Methyltransferase, putative RD1_RS05000 659c243cf34b544dfcfcffec69da99aa 159 SUPERFAMILY SSF53335 13 132 3.33E-7 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RD1_RS19145 18c63ab83f51529983e1b374515e0598 142 Pfam PF14108 Domain of unknown function (DUF4281) 6 127 7.3E-29 T 23-04-2016 IPR025461 ABA DEFICIENT 4-like RD1_RS02420 d74f58ff2d84bf0ad37d12037c78bbd1 425 Pfam PF13584 Oxygen tolerance 26 274 9.1E-25 T 23-04-2016 IPR025738 Aerotolerance-related protein BatD RD1_RS09415 43bd51fe91d45280c9692d9ecb3502f8 151 Pfam PF13778 Domain of unknown function (DUF4174) 39 140 1.3E-18 T 23-04-2016 IPR025232 Domain of unknown function DUF4174 RD1_RS08700 44070bd1b3e025cbfaf8f58b9c0d5fee 100 Pfam PF10048 Predicted integral membrane protein (DUF2282) 30 78 2.8E-26 T 23-04-2016 IPR018740 Protein of unknown function DUF2282, integral membrane RD1_RS00605 d9552a65a14bef2982d8ae91430ea09e 212 Pfam PF03703 Bacterial PH domain 96 185 8.5E-18 T 23-04-2016 IPR005182 Domain of unknown function DUF304 RD1_RS18510 6f7c0b6a4033f4ab8ed255a655fccb5b 516 Pfam PF06527 TniQ 9 138 3.9E-17 T 23-04-2016 IPR009492 TniQ RD1_RS15060 cfa09c69faa300d6e8ea192791141675 133 ProDom PD082112 PRECURSOR SIGNAL 5'REGION NQO3 URF3 23 130 2.0E-21 T 23-04-2016 IPR020349 Uncharacterised protein family 14.7kDa RD1_RS12845 93ce09f6292a2ee31d1a9cbedc98ae2c 395 Pfam PF05762 VWA domain containing CoxE-like protein 188 274 2.5E-9 T 23-04-2016 IPR008912 Uncharacterised protein family CoxE-like RD1_RS16510 30f8830ac2417af038b606422a63cd7f 342 PANTHER PTHR30482 17 339 2.4E-54 T 23-04-2016 RD1_RS16510 30f8830ac2417af038b606422a63cd7f 342 Pfam PF02653 Branched-chain amino acid transport system / permease component 39 322 5.7E-31 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RD1_RS07240 090a06e6f790f4175d55a94ef0af0565 105 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 29 100 6.6E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07240 090a06e6f790f4175d55a94ef0af0565 105 SUPERFAMILY SSF46626 4 104 2.36E-16 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS07240 090a06e6f790f4175d55a94ef0af0565 105 Gene3D G3DSA:1.10.760.10 13 103 4.5E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RD1_RS02655 7c2d9a48933d25c5b572e619968b0411 232 Pfam PF08889 WbqC-like protein family 9 224 2.3E-75 T 23-04-2016 IPR014985 WbqC-like protein family RD1_RS14950 9cf9756379f756c7c362484cd0203845 109 SUPERFAMILY SSF54909 4 71 2.15E-6 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RD1_RS08285 fe17bb1cef031fcf14b259d654886bc9 94 Pfam PF10115 Transcriptional activator HlyU 2 92 2.0E-34 T 23-04-2016 IPR018772 Transcription activator HlyU RD1_RS20240 741f60d4873a380f8a0441ade2d35b26 76 Gene3D G3DSA:3.50.50.60 3 45 1.0E-5 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RD1_RS15795 91c5a82b5eeea81c1a8e5964dd7811fa 159 Pfam PF06347 Bacterial SH3 domain 35 91 9.0E-20 T 23-04-2016 IPR010466 Protein of unknown function DUF1058 RD1_RS15795 91c5a82b5eeea81c1a8e5964dd7811fa 159 Pfam PF06347 Bacterial SH3 domain 102 151 7.3E-14 T 23-04-2016 IPR010466 Protein of unknown function DUF1058 RD1_RS16490 a24cef89a61679bfdc9ad78dfef4e1c7 651 Pfam PF02538 Hydantoinase B/oxoprolinase 8 532 5.7E-141 T 23-04-2016 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 RD1_RS16490 a24cef89a61679bfdc9ad78dfef4e1c7 651 PANTHER PTHR11365 6 537 1.4E-57 T 23-04-2016 RD1_RS07500 a4291dcc5fb164336040c9803263b8f6 244 Pfam PF14247 Putative metallopeptidase 29 161 4.0E-38 T 23-04-2016 IPR025644 Putative metallopeptidase RD1_RS07500 a4291dcc5fb164336040c9803263b8f6 244 Pfam PF14247 Putative metallopeptidase 189 234 6.4E-8 T 23-04-2016 IPR025644 Putative metallopeptidase RD1_RS04205 1b0e605d2e06ca3d65f6f9dbc6dcb77e 57 Gene3D G3DSA:2.10.70.10 17 57 3.0E-12 T 23-04-2016 RD1_RS04205 1b0e605d2e06ca3d65f6f9dbc6dcb77e 57 Pfam PF10636 Hemin uptake protein hemP 21 57 2.2E-15 T 23-04-2016 IPR019600 Hemin uptake protein HemP RD1_RS07740 685be096dff206edbe5ac02769c7eb04 187 Pfam PF07750 GcrA cell cycle regulator 1 184 5.5E-51 T 23-04-2016 IPR011681 GcrA cell cycle regulator RD1_RS13835 92ebb23891c5c413f913e42e8365790a 99 Pfam PF04977 Septum formation initiator 21 99 3.0E-10 T 23-04-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 RD1_RS11345 a977af11e310e2a503909ee067b0fc50 71 Pfam PF11160 Protein of unknown function (DUF2945) 7 57 2.6E-5 T 23-04-2016 IPR021331 Protein of unknown function DUF2945 RD1_RS08130 61b4e2a3e9b7764625e75933fe250b1a 285 SUPERFAMILY SSF51069 144 277 5.37E-7 T 23-04-2016 IPR001148 Alpha carbonic anhydrase RD1_RS13410 9b4cd1e2f17d9871c429a246dc3a1dbb 247 Pfam PF01925 Sulfite exporter TauE/SafE 9 239 5.4E-24 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RD1_RS16525 d200e990097379db57d1e4351a6876f4 347 Pfam PF13515 Fusaric acid resistance protein-like 192 321 7.9E-12 T 23-04-2016 RD1_RS17580 a39ada6ffd9eee752a4f11c2b5887c2c 435 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 338 422 4.3E-7 T 23-04-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain RD1_RS01540 c5767853a2891d5644a96956f0b3d1a5 299 Pfam PF02517 CAAX protease self-immunity 152 246 2.6E-17 T 23-04-2016 IPR003675 CAAX amino terminal protease GO:0016020 RD1_RS16365 54399c5d7211d841522cbca68c98e999 263 Pfam PF14023 Protein of unknown function (DUF4239) 58 245 2.1E-6 T 23-04-2016 IPR025333 Protein of unknown function DUF4239 RD1_RS00715 7ce5e17f859bbb153ad3c0169c968920 350 SUPERFAMILY SSF56935 74 330 4.4E-5 T 23-04-2016 RD1_RS08685 3a38510a6a9cb15b94e444fe1bbeaf46 184 Pfam PF07681 DoxX 22 117 4.5E-9 T 23-04-2016 IPR032808 DoxX family RD1_RS00740 785a3bcbc2c88a8a43d4e613a027d5cc 123 Pfam PF07309 Flagellar protein FlaF 7 116 1.7E-30 T 23-04-2016 IPR010845 Flagellar FlaF GO:0044781 RD1_RS11625 0d574de24fb0cad0728a8b44d9b30309 135 Pfam PF06170 Protein of unknown function (DUF983) 43 126 4.3E-29 T 23-04-2016 IPR009325 Protein of unknown function DUF983 RD1_RS13130 6dc874914218a58035d1f7a63155bd80 119 Pfam PF09923 Uncharacterized protein conserved in bacteria (DUF2155) 28 116 5.1E-27 T 23-04-2016 IPR019225 Protein of unknown function DUF2155 RD1_RS09515 8baebe5b0336ca21d87277beb6877819 94 Gene3D G3DSA:3.30.70.900 25 69 6.9E-5 T 23-04-2016 RD1_RS04945 2fce06703b1c2b34cfb2f302d6e06de1 195 SUPERFAMILY SSF55729 3 167 6.53E-12 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS04945 2fce06703b1c2b34cfb2f302d6e06de1 195 Gene3D G3DSA:3.40.630.30 12 167 6.3E-12 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RD1_RS13770 2483a263258a84862d6a3f73dd34edd8 220 TIGRFAM TIGR03370 VPLPA-CTERM: VPLPA-CTERM protein sorting domain 195 219 1.5E-9 T 23-04-2016 IPR022472 VPLPA-CTERM protein sorting domain RD1_RS01460 cecc7dd1f431c1f41fa271c37e57e2f1 126 Gene3D G3DSA:1.20.120.160 11 118 1.5E-4 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RD1_RS03370 7ca374563ef003e8af31a4edf6d5d176 132 Pfam PF13664 Domain of unknown function (DUF4149) 7 98 1.2E-9 T 23-04-2016 IPR025423 Domain of unknown function DUF4149 RD1_RS05695 8498ac9ccd6d6a300e458993c9016aae 156 Pfam PF11158 Protein of unknown function (DUF2938) 8 156 4.3E-60 T 23-04-2016 IPR021329 Protein of unknown function DUF2938 RD1_RS09700 e9cabebfdf416265e4a79ed76b1619d9 364 SUPERFAMILY SSF74653 251 359 2.75E-6 T 23-04-2016 RD1_RS09765 470c0bbfc0aba9e4b6a7381d1af965f5 165 Pfam PF01478 Type IV leader peptidase family 15 113 3.5E-8 T 23-04-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 RD1_RS10165 463aa63b3202d90f74244f910e1e69ac 163 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 7 147 2.9E-16 T 23-04-2016 IPR009936 Protein of unknown function DUF1468 RD1_RS03525 5f98b53ae978d69501da25e0039219ed 337 Pfam PF14238 Domain of unknown function (DUF4340) 76 261 1.5E-16 T 23-04-2016 IPR025641 Domain of unknown function DUF4340 RD1_RS15545 dee29731373f759e6019bbc5105f2fea 259 Pfam PF06904 Extensin-like protein C-terminus 106 259 7.3E-50 T 23-04-2016 IPR009683 Extensin-like, C-terminal RD1_RS09660 4917e45f9b4cd81c7ad71be1603f5a53 72 Pfam PF06568 Domain of unknown function (DUF1127) 28 62 9.3E-15 T 23-04-2016 IPR009506 Protein of unknown function DUF1127 RD1_RS07190 1399623a403bcc1e1dacb185967d59ab 83 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 8 76 2.5E-7 T 23-04-2016 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 RD1_RS13715 9facefe8a381f72e0b9e1cd8f4599f44 130 Pfam PF05164 Cell division protein ZapA 4 90 5.2E-21 T 23-04-2016 IPR007838 Cell division protein ZapA-like RD1_RS13715 9facefe8a381f72e0b9e1cd8f4599f44 130 SUPERFAMILY SSF102829 4 89 3.4E-18 T 23-04-2016 IPR007838 Cell division protein ZapA-like RD1_RS03200 56ec800493dbff34cc58180fd9254df5 184 Pfam PF12915 Protein of unknown function (DUF3833) 22 180 5.6E-50 T 23-04-2016 IPR024409 Protein of unknown function DUF3833 RD1_RS10295 d01fe9b0d6e4eb1ae6b19eff0c413a44 171 Gene3D G3DSA:1.10.10.10 50 98 3.8E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RD1_RS08015 d495897c87b34c660b67375705008d02 218 Pfam PF10986 Protein of unknown function (DUF2796) 26 210 1.9E-46 T 23-04-2016 IPR021253 Protein of unknown function DUF2796 RD1_RS13450 90a6916ed056099ddc04282e30553375 156 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 18 151 1.9E-11 T 23-04-2016 IPR009936 Protein of unknown function DUF1468